Citrus Sinensis ID: 002782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880--
Protein Sequence
MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA
Secondary Structure (PSIPRED)
ccccccccEEEcccEEEcEEEEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccEEEEEEEccccccccccccccccccEEcccccccEEEEEEEcccEEEEEEcccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccEEEEEEEEccccEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccHHHHHHHHccccccEEcccEEEEEEEcccHHHHHHHHHcccccEEEEEEccHHHccccHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHccccccccccccccccEEccccccccccccccccHHHcccccccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccccccccccEEEcccccEEEEccccEEEEEEcccccEEEEcccEEEEEEEEccccEEEEcccHHHHHHHccccHHHHHHHHHHccccEEEEccccccEEEcccccccEEcccccccHHHHHcccccccHHcHHHHHcccccccccccccccccccccccEEEEEEEccEcEcEccc
Coil and Loop (DISEMBL)
maslplkksygcepvlqqfygggplvvssdgsfiacacgesinivdlsnasikstieggsdtitalalspddkllfssghsreiRVWDLSTLKCLrswkghdgpaigmachpsggllatagadrKVLVwdvdggfcthyfkghkgvvssilfhpdtdksllfsgsddaTVRVWDLLAKKCVATLDKHFSRVTSMAItsdgstlisagrdkvvnlwdlrdysckltvptYEMVEAVcaippgsafdsFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWnadsaclyeqkssdvtisfemddskrgftaatvlpsnqgllcvtaDQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDtcalssgkILIVtgskdnsvrlwdsesrccvgvgtghmgaVGAVAFSKKLQNFLVsgssdhtikvwsfdglsddaeqpMNLKAKAVVAAhgkdinslavapndslvctgsqdrtacvwrlpdLVSVVTfrghkrgiwsvefspvdqVVITAsgdktikiwsisdgsclktfeghtssvLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKtemfatggsDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREwntkpklchVAQFVLFQlfnihppteiieIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDytltgmsviepdtearEVKAESLvdsnvhqdandVVITENVAKEQiesegktaskkrkshksresshkkeRRADQTNAAAISLQA
Flexible Loop (DISEMBL)
maslplkksygCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDkhfsrvtsmaitsdgstlisagrdKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTikkkrrslEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVtgskdnsvrlWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFrghkrgiwsvefspvdqVVITasgdktikiWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESlvdsnvhqdandVVITENvakeqiesegktaskkrkshksresshkkerradqtnaaaislqa
Low Complexity Region (SEG)
MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTaaereeafrkeeeaVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTAskkrkshksresshkkerrADQTNAAAISLQA
Disordered region (IsUnstruct)
*********YGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS*******NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS***************VLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIE***************************************************************************
Disordered Region (DISOPRED)
***LPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV*****************************************************************************
Disordered Region (DISEMBL)
MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQ****************************************
Disordered Region (DISPRO)
*ASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITEN***************************KKERRADQTNAAAISL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	882	2.2.26 [Sep-21-2011]
Q2KJJ5	800	Transducin beta-like prot	yes	no	0.871	0.961	0.398	1e-169
Q5U2W5	800	Transducin beta-like prot	yes	no	0.869	0.958	0.392	1e-167
Q8C4J7	801	Transducin beta-like prot	yes	no	0.869	0.957	0.387	1e-166
Q12788	808	Transducin beta-like prot	yes	no	0.875	0.955	0.390	1e-165
Q9USN3	777	Probable U3 small nucleol	yes	no	0.859	0.975	0.322	1e-121
Q05946	817	U3 small nucleolar RNA-as	yes	no	0.866	0.935	0.321	1e-107
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.643	0.372	0.290	5e-71
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.640	0.449	0.253	7e-56
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.623	0.326	0.267	1e-43
Q00808	1356	Vegetative incompatibilit	no	no	0.370	0.241	0.299	5e-40

>sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1

 Score =  595 bits (1534), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 323/811 (39%), Positives = 472/811 (58%), Gaps = 42/811 (5%)

Query: 6   LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
            K +Y  E  ++ FY GG + +   G  + C CG  +NI+D+ S A ++S  +   + IT
Sbjct: 11  FKSNYAVERKIEPFYKGGKVQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDIT 70

Query: 65  ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
           A  LSPDDK+L ++  +  +  W        R WK  H  P   MA  P+  LLAT G D
Sbjct: 71  AFDLSPDDKVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGCD 130

Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
             V VWDV   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C+A 
Sbjct: 131 GAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADTSIRVWSLQERSCLAV 190

Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
           L  H+S VTS+  ++DG T++S+GRDK+  +WDLR      TVP +E VEA   +P   A
Sbjct: 191 LTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDLRSLQATRTVPVFESVEAAVLLPEEPA 250

Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
            +  + S              +HF+T G++G +R+W A S  C++ Q+         +  
Sbjct: 251 PELGVKSAG------------LHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRG 290

Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
             R  T  T+  +   LL VTAD  LLLY           L L K+  GY+EE+LD++FL
Sbjct: 291 PGRELTHCTLAHAAGLLLSVTADHNLLLY-------DARSLRLRKQFAGYSEEVLDVRFL 343

Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
           G E+ ++ VA+N   ++V+DL + +C  +L GH++IVL LD      G+ L  + +KD S
Sbjct: 344 GPEDSHVVVASNSPCLKVFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQS 399

Query: 423 VRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDD 477
           +R+W    S    CV  G+GH  +VG +  S+  + FLV+GS D T+K+W      LS  
Sbjct: 400 IRVWRMNKSGEVACVAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKG 459

Query: 478 AEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
                 P+ L+A+A    H KDINS+AVAPND L+ TGSQDRTA +W LP    + TF G
Sbjct: 460 TGHEGGPVFLQAQATQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSG 519

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
           H+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++
Sbjct: 520 HRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLL 579

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
           S G+DGL+KLWT++  EC+ T D HEDK+W L   +  +   TG SD+ V LW D T AE
Sbjct: 580 SSGSDGLLKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAE 639

Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
           + E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++
Sbjct: 640 QAEEQAKREEQVVKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKL 699

Query: 715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
           E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   LEG
Sbjct: 700 ETTVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEG 759

Query: 775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 805
           L+PYT+RHF R+ R++++   LD+    M +
Sbjct: 760 LLPYTERHFQRLSRMLQAATFLDFLWHNMKL 790

Bos taurus (taxid: 9913)

>sp|Q5U2W5|TBL3_RAT Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1

 Score =  589 bits (1518), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 319/813 (39%), Positives = 474/813 (58%), Gaps = 46/813 (5%)

Query: 6   LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTIEGGSDTIT 64
            K +Y  E  ++ FY GG   +   G  + C CG  +NI+D+++   I+S  +   + IT
Sbjct: 11  FKANYAVERKIEPFYKGGKAQLDQTGRHLFCVCGTKVNILDVASGDLIRSLEQEDQEDIT 70

Query: 65  ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
           A  LSPDD++L ++  +  +  W        R WK  H  P   MA   +  LLAT G D
Sbjct: 71  AFDLSPDDEVLVTASRALLLAQWAWREGTVARLWKAIHTAPVASMAFDATSTLLATGGCD 130

Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
             V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C+A 
Sbjct: 131 GAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAV 190

Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
           L  H+S VTS++ + DG T++S+GRDK+  +WDLR Y    TVP +E VEA   +P   A
Sbjct: 191 LTAHYSAVTSLSFSEDGHTMLSSGRDKICIVWDLRSYETSRTVPVFESVEASVLLPEEPA 250

Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
                       +  K   L  HF+T G++GI+R+W A S  C+Y Q         +M  
Sbjct: 251 L----------ALGVKNSGL--HFLTAGDQGILRVWEAASGQCVYTQP--------QMSG 290

Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
            ++  T  T+  +   LL VTAD  LLLY       +   L L K+  GY+EE+LD++FL
Sbjct: 291 LRQELTHCTLARAAGLLLTVTADHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFL 343

Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
           G  + ++ VA+N   ++V++L +++C  +L GH++IVL LD   +     L  + +KD S
Sbjct: 344 GPNDSHIIVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASCAKDQS 399

Query: 423 VRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-------SFD 472
           +R+W    +    CV  G+GH  +VG +  S+  ++FLV+GS D T+K+W       S +
Sbjct: 400 IRIWRMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSKN 459

Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
             SD    P  L+A++    H KDINSLAV+PND L+ TGSQDRTA +W LP    +  F
Sbjct: 460 TASDGDLIP--LQAQSTQRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVF 517

Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
            GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RGAQ
Sbjct: 518 SGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQ 577

Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
           ++S G+DGL+KLWT+++ EC+ T D HEDK+W L   +  +   TGGSD+ + LW D T 
Sbjct: 578 LLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTE 637

Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 712
           AE+ E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  
Sbjct: 638 AEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACE 697

Query: 713 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 772
           ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   L
Sbjct: 698 KLEATVLRLRRDQKEALLRFCITWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGAL 757

Query: 773 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 805
           E L+PYT+RHF R+ R +++   LD+    M +
Sbjct: 758 EALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790

Rattus norvegicus (taxid: 10116)

>sp|Q8C4J7|TBL3_MOUSE Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1

 Score =  587 bits (1512), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 315/813 (38%), Positives = 473/813 (58%), Gaps = 46/813 (5%)

Query: 6   LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
            K +Y  E  ++ FY GG   +   G ++ C CG  +NI+D+ S A ++S  +   + IT
Sbjct: 11  FKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDIT 70

Query: 65  ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
           +  LSPDD++L ++  +  +  W        R WK  H  P   MA   +  LLAT G D
Sbjct: 71  SFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGCD 130

Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
             V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C+A 
Sbjct: 131 GAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAV 190

Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP--PG 241
           L  H+S VTS++ +  G T++S+GRDK+  +WDL+ Y    TVP +E VEA   +P  P 
Sbjct: 191 LTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQPA 250

Query: 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEM 300
            A                 +S  +HF+T G++GI+R+W A S  C+Y Q         +M
Sbjct: 251 PALGV--------------KSSGLHFLTAGDQGILRVWEAASGQCVYTQP--------QM 288

Query: 301 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360
              ++  T  T+  +   LL VTAD  LLLY       +   L L K+  GY+EE+LD++
Sbjct: 289 PGLRQELTHCTLARAADLLLTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVLDVR 341

Query: 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420
           FLG  + ++ VA+N   ++V++L +++C  +L GH++IVL LD   +     L  + +KD
Sbjct: 342 FLGPSDSHIVVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASCAKD 397

Query: 421 NSVRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD----G 473
            S+R+W         CV  G+GH  +VG +  S+  ++FLV+GS D T+K+W        
Sbjct: 398 QSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLA 457

Query: 474 LSDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
            S  A+  P+ L+A+     H KDINSLAV+PND L+ TGSQDRTA +W LP    +  F
Sbjct: 458 KSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVF 517

Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
            GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG+Q
Sbjct: 518 TGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQ 577

Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
           ++S G+DGL+KLWT+++ EC+ T D HEDK+W L   +  +   TGGSD+ + LW D T 
Sbjct: 578 LLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTE 637

Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 712
           AE+ E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  
Sbjct: 638 AEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACE 697

Query: 713 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 772
           ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   L
Sbjct: 698 KLEATVLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSL 757

Query: 773 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 805
           E L+PYT+RHF R+ R +++   LD+    M +
Sbjct: 758 EALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790

Mus musculus (taxid: 10090)

>sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2

 Score =  583 bits (1502), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/814 (39%), Positives = 472/814 (57%), Gaps = 42/814 (5%)

Query: 6   LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
            K +Y  E  ++ FY GG   +   G  + C CG  +NI+++ S A ++S  +   + IT
Sbjct: 11  FKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRSLEQEDQEDIT 70

Query: 65  ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
           A  LSPD+++L ++  +  +  W        R WK  H  P   MA  P+  LLAT G D
Sbjct: 71  AFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGCD 130

Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
             V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + DA +RVW L  + C+A 
Sbjct: 131 GAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCLAV 190

Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
           L  H+S VTS+A ++DG T++S+GRDK+  +WDL+      TVP +E VEA   +P    
Sbjct: 191 LTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLPE--- 247

Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
                   +Q  +K    S  ++F+T G++G +R+W A S  C+Y Q +       E+  
Sbjct: 248 -----EPVSQLGVK----SPGLYFLTAGDQGTLRVWEAASGQCVYTQ-AQPPGPGQELTH 297

Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
                TA  VL +       TAD  LLLY       +   L L K+  GY+EE+LD++FL
Sbjct: 298 CTLAHTAGVVLTA-------TADHNLLLY-------EARSLRLQKQFAGYSEEVLDVRFL 343

Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
           G E+ ++ VA+N   ++V++L + +C  +L GH++IVL LD   +     L  + +KD S
Sbjct: 344 GPEDSHVVVASNSPCLKVFELQTSACQ-ILHGHTDIVLALD---VFRKGWLFASCAKDQS 399

Query: 423 VRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDD 477
           VR+W    +    CV  G+GH  +VG V  S+  ++FLV+GS D T+K+W      LS +
Sbjct: 400 VRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKN 459

Query: 478 AEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
                 P+ L+A+     H KDINS+A+APND L+ TGSQDRTA +W LP    +  F G
Sbjct: 460 TAPDNGPILLQAQTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSG 519

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
           H+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++
Sbjct: 520 HRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLL 579

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
           S G+DGLVKLWT++  EC+ T D HEDK+W L   +  +   TG SD+ V LW D T AE
Sbjct: 580 SSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAE 639

Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
           + E   ++EE V+R QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++
Sbjct: 640 QAEEQARQEEQVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKL 699

Query: 715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
           E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++  +G+   LE 
Sbjct: 700 EATMLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEA 759

Query: 775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEP 808
           L+PYT+RHF R+ R +++   LD+    M +  P
Sbjct: 760 LLPYTERHFQRLSRTLQAAAFLDFLWHNMKLPVP 793

Homo sapiens (taxid: 9606)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score =  436 bits (1121), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/819 (32%), Positives = 430/819 (52%), Gaps = 61/819 (7%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESI-NIVDLSNASIKSTIEGG 59
           MA +  KK +  E  ++  Y GGP+   S+   +  A  + I      +   + S  +  
Sbjct: 1   MAPIGEKKRFELEKSIEPIYTGGPVAFDSNEKILVTALTDRIIGTRSETGERLFSIKKDE 60

Query: 60  SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT 119
            D +TALA++ D K L ++  SR + ++++ + + ++S K H+ P I M   P+  LLAT
Sbjct: 61  DDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRIKSMKAHETPVITMTIDPTNTLLAT 120

Query: 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
            GA+  V VWD+ G + TH F+GH GV+S++ F    +  +L SG+DD+ VR+WDL + +
Sbjct: 121 GGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSR 180

Query: 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
            +A  + H S +  +     GS L+S  RDK V +W+++  S   T+P +  VEA+  + 
Sbjct: 181 SMAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWV- 239

Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299
                       N Q  +K          T GE  ++  W+  S        S +    +
Sbjct: 240 ------------NGQPEEKI-------LYTAGEGNLILAWDWKSG-------SRLDPGVD 273

Query: 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 359
              S+       V  S   LL V +D  LLL     VP +    I  K+L G  +E++D 
Sbjct: 274 TTHSETNAIIQVVPFSENTLLSVHSDLSLLLRK--RVPGEG--FITIKKLNGSFDEVIDC 329

Query: 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419
            ++G++  +LAV +N E + V          VL GH++IVL LD+   S   + + TG+K
Sbjct: 330 AWIGDD--HLAVCSNTEFIDVISTDGTQVFGVLEGHTDIVLTLDS---SEDGVWLATGAK 384

Query: 420 DNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQN----FLVSGSSDHTIKVWSF 471
           DN+VRLW+         C+ V TGH  +V AVA      N    FL S S D T+K   F
Sbjct: 385 DNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALGPLDVNGYPTFLASSSQDRTLK--RF 442

Query: 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531
           +  S   +   + +A   + AH +D+N++ V+ +  ++ + SQD+T  +W       V  
Sbjct: 443 NLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGV 502

Query: 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
            RGH+RG+W+  F+P  + + + SGD+TI+IW++    C++T EGHT ++L+  ++++G 
Sbjct: 503 LRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGT 562

Query: 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
           Q+VS  ADGLVK+W++ +GEC+AT D HED++WALA      +  +GG+DA+V++W D T
Sbjct: 563 QVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVT 622

Query: 652 AAEREEAFRKEEEAVLRGQE----LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRK 707
               EE   K+ E + R  E    L N     D+ +AI +A  L RPH L  LF  V   
Sbjct: 623 ----EEYIAKQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRLFERVMTA 678

Query: 708 RE------AELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTE 761
                       ++  L  L   ++  L + +R+WNT  K   VAQ +L  L + + P  
Sbjct: 679 PHQPNSITGNKDVDNVLVQLPDHQLIILFQRIRDWNTNSKTSMVAQRLLRLLLHSYSPEH 738

Query: 762 IIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTL 800
           ++++ GI D+L+ +IPYT RH +R++ L+  ++++DY +
Sbjct: 739 LLKLSGIKDILDSMIPYTDRHLARVNDLIEDSYIVDYVI 777

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP13 PE=1 SV=1

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 273/849 (32%), Positives = 424/849 (49%), Gaps = 85/849 (10%)

Query: 4   LPLKKSY-GCEPVLQQFYGGGPLV--VSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           + LK SY G    L   Y G   V  VS +G  +A    + INI+DL+  S K   +  +
Sbjct: 1   MDLKTSYKGIS--LNPIYAGSSAVATVSENGKILATPVLDEINIIDLTPGSRKILHKISN 58

Query: 61  D---TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117
           +    ITAL L+PD + L     ++ ++++ L T K +RS K    P+  +    +  LL
Sbjct: 59  EDEQEITALKLTPDGQYLTYVSQAQLLKIFHLKTGKVVRSMK-ISSPSYILDADSTSTLL 117

Query: 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS--LLFSGSDDATVRVWDL 175
           A  G D  ++V D++ G+ TH FKGH G +SS+ F+   +    LL SG  +  V+VWDL
Sbjct: 118 AVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWDL 177

Query: 176 LAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR---DYSCKLTV 226
           + +KC+ TL +H S V  + I            L+S GRD ++NLWD           T+
Sbjct: 178 VKRKCLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIINLWDFNMKKKCKLLKTL 237

Query: 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286
           P  + VE+ C          FL   + + I            T G   I ++ +++S  +
Sbjct: 238 PVNQQVES-CG---------FLKDGDGKRI----------IYTAGGDAIFQLIDSESGSV 277

Query: 287 YEQKSSDVTISFEMDDSKRGFTAATVLP--SNQGLLCVTADQQLLLYTTVEVPEKKMELI 344
            ++ +  +   F +           VLP  SN  +  V +DQ L L    E  +   + I
Sbjct: 278 LKRTNKPIEELFIIG----------VLPILSNSQMFLVLSDQTLQLINVEEDLKNDEDTI 327

Query: 345 -LSKRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYVL-----AGH 395
            ++  + G +  I D++++G E   LA+ATN   +  + V DLS    S  L      GH
Sbjct: 328 QVTSSIAGNHGIIADMRYVGPELNKLALATNSPSLRIIPVPDLSGPEASLPLDVEIYEGH 387

Query: 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMGAVGAVAF-- 449
            +++  LD    +   + I T SKDN+  +W      C         GH  AV AV    
Sbjct: 388 EDLLNSLDA---TEDGLWIATASKDNTAIVWRYNENSCKFDIYAKYIGHSAAVTAVGLPN 444

Query: 450 --SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507
             SK    FL++ S+D TIK W     +   +  +   ++    AH KDIN+L+V+PNDS
Sbjct: 445 IVSKGYPEFLLTASNDLTIKKWIIPKPTASMDVQIIKVSEYTRHAHEKDINALSVSPNDS 504

Query: 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567
           +  T S D+T  +W L +     T   HKRG+W V F   D+++ T+SGDKT+KIWS+  
Sbjct: 505 IFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKTVKIWSLDT 564

Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
            S +KT EGHT++V R SF+ +  Q++SCGADGL+K+W   +GEC+ T D H +++WAL+
Sbjct: 565 FSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGHNNRLWALS 624

Query: 628 VGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQV 687
                +M  +  +D +   W D T  E EE   K +  V + Q L+N +   D+T A  +
Sbjct: 625 TMNDGDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLL 684

Query: 688 AFELRRPHKLFELFA-----SVCRKREAELQIE--------KALHALGKEEIRQLLEYVR 734
           A  L  P +LF +       S  R+   E +IE        +A+  L  E++  L++  R
Sbjct: 685 AMTLDHPMRLFNVLKRALGESRSRQDTEEGKIEVIFNEELDQAISILNDEQLILLMKRCR 744

Query: 735 EWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTF 794
           +WNT  K   +AQ  +  +   H   ++ EI G+  +++ +IPYTQRHF+R+D LV  ++
Sbjct: 745 DWNTNAKTHTIAQRTIRCILMHHNIAKLSEIPGMVKIVDAIIPYTQRHFTRVDNLVEQSY 804

Query: 795 LLDYTLTGM 803
           +LDY L  M
Sbjct: 805 ILDYALVEM 813

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  270 bits (689), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 184/633 (29%), Positives = 304/633 (48%), Gaps = 65/633 (10%)

Query: 25   LVVSSDGSFIACACGESINIVDLSNASIKS---TIEGGSDTITALALSPDDKLLFSSGHS 81
            +  S DG   A   G+S  IV    A+      T +G +  + ++  S D K+L S    
Sbjct: 870  VAFSPDGKLFAT--GDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDD 927

Query: 82   REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141
            + +R+WD+S+ +CL+++KGH      +   P+  +LA+  +D+ V +WD+  G C + F+
Sbjct: 928  QTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQ 987

Query: 142  GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201
            GH G V S+ F  + D S+L +GS D TVR+WD+ + +C      H S V S+  +SDG+
Sbjct: 988  GHTGWVYSVAF--NLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGA 1045

Query: 202  TLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260
             L S   D+ V LWD+   +C  T+  +   V +V   P G+   S              
Sbjct: 1046 MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLAS-------------- 1091

Query: 261  RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
                      G+  IVR+W+  S  CLY  +     + F               P+   L
Sbjct: 1092 ---------GGDDQIVRLWDISSGNCLYTLQGYTSWVRF-----------LVFSPNGVTL 1131

Query: 320  LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
               ++DQ + L+   ++  KK    L     G+   +  + F   +   LA  +  + V+
Sbjct: 1132 ANGSSDQIVRLW---DISSKKCLYTLQ----GHTNWVNAVAF-SPDGATLASGSGDQTVR 1183

Query: 380  VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 439
            ++D+SS  C Y+L GH+  V   ++   +     + +GS D +VRLW+  S  C+    G
Sbjct: 1184 LWDISSSKCLYILQGHTSWV---NSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQG 1240

Query: 440  HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
            H   V +V F+    + L SGSSD T+++W             + K       H   +NS
Sbjct: 1241 HTSWVNSVVFNPD-GSMLASGSSDKTVRLWDIS----------SSKCLHTFQGHTNWVNS 1289

Query: 500  LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
            +A  P+ S++ +GS D+T  +W +     + TF+GH   + SV FSP   ++ + S D+T
Sbjct: 1290 VAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQT 1349

Query: 560  IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619
            +++WSIS G CL TF GHT+ V    F   GA + S   D  V+LW++ +G+C+ T   H
Sbjct: 1350 VRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGH 1409

Query: 620  EDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
             + + ++       + A+G  D  V LW+ S+ 
Sbjct: 1410 NNWVGSIVFSPDGTLLASGSDDQTVRLWNISSG 1442

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  219 bits (558), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 160/630 (25%), Positives = 276/630 (43%), Gaps = 65/630 (10%)

Query: 28   SSDGSFIA-CACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
            S +G  +A C     + + ++ +  +     G S+ +  +  SPD ++L S G    +++
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKL 710

Query: 87   WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
            W +    C+++  GH+     +A HP G  LA+A  D+ + +WD+  G C     GH   
Sbjct: 711  WSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDW 770

Query: 147  VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
            V  + F PD +   L S + D T+++WD+   KC+ TL  H   V S+A ++DG TL S 
Sbjct: 771  VRCVAFSPDGNT--LASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASG 828

Query: 207  GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266
              D+ + +W+     C  T   +       A  P S     +S    +TIK         
Sbjct: 829  SGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKI--LVSGSGDRTIK--------- 877

Query: 267  FITVGERGIVRMWNADS----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV 322
                       +W+  +      L+   +   +++F               P  Q L CV
Sbjct: 878  -----------LWDCQTHICIKTLHGHTNEVCSVAFS--------------PDGQTLACV 912

Query: 323  TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 382
            + DQ + L+       +  + +  K   G  +  L + F   + Q LA  +N + V+++D
Sbjct: 913  SLDQSVRLWNC-----RTGQCL--KAWYGNTDWALPVAF-SPDRQILASGSNDKTVKLWD 964

Query: 383  LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 442
              +      L GH++ +  +   A S     + + S D+SVRLW+  +  C  +   H  
Sbjct: 965  WQTGKYISSLEGHTDFIYGI---AFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTD 1021

Query: 443  AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502
             V AV F  +    + +GS+D T+K+W+              +    ++ H   I  +A 
Sbjct: 1022 WVYAVVFHPQ-GKIIATGSADCTVKLWNIS----------TGQCLKTLSEHSDKILGMAW 1070

Query: 503  APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI 562
            +P+  L+ + S D++  +W       V   RGH   ++S  FSP  +++ T S D+T+KI
Sbjct: 1071 SPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI 1130

Query: 563  WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
            W    G CLKT  GHT+ V   +F   G  + S   D  V++W V TG+C      H   
Sbjct: 1131 WDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHL 1190

Query: 623  IWALAVGKKTEMFATGGSDALVNLWHDSTA 652
            + ++A     E+ A+G  D  V +W+  T 
Sbjct: 1191 VSSVAFSPDGEVVASGSQDQTVRIWNVKTG 1220

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 258/590 (43%), Gaps = 40/590 (6%)

Query: 27   VSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
            +S DG  IA    +    +   +  +  T+ G  D + +++ SPD + + S G  + I++
Sbjct: 1080 ISRDGQTIASGSLDKTIKLWSRDGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKL 1139

Query: 87   WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
            W  S    L++  GH+     +   P G  LA+A +D  + +WD   G       GH   
Sbjct: 1140 WQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAG 1199

Query: 147  VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
            V ++ F PD     + +GS+D TV++W     K + TL+ H   V S++ + DG TL SA
Sbjct: 1200 VITVRFSPDGQT--IAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASA 1257

Query: 207  GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK-KRRSLEI 265
              DK + LW + D     T+  +   ++V  +   S   +  S+    TIK   R  +E+
Sbjct: 1258 SADKTIKLWRIADGKLVKTLKGHN--DSVWDVNFSSDGKAIASASRDNTIKLWNRHGIEL 1315

Query: 266  HFITVGERGIVRMWNADSACLYEQKSSDVTI---------SFEMDDSKRGFTAATVLPSN 316
               T    G+  +     + +    S D TI           E+     G  A + L   
Sbjct: 1316 ETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDG 1375

Query: 317  QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376
              +    AD  + L+ + +         L K L G N+ I  + F  + +  +A A   +
Sbjct: 1376 SIIATAGADGNIQLWHSQDGS-------LLKTLPG-NKAIYGISFTPQGD-LIASANADK 1426

Query: 377  QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436
             V+++ +        L GH   V   +    S     + + S+DN+V+LW+         
Sbjct: 1427 TVKIWRVRDGKALKTLIGHDNEV---NKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKT 1483

Query: 437  GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGK 495
              GH   V  V+FS      + S S+D TI++W SF G         NL     + AH  
Sbjct: 1484 LKGHTDEVFWVSFSPD-GKIIASASADKTIRLWDSFSG---------NLIKS--LPAHND 1531

Query: 496  DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
             + S+   P+ S++ + S D+T  +WR  D   + TF GH   ++S  FSP  + + +AS
Sbjct: 1532 LVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASAS 1591

Query: 556  GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
             DKT+KIW I DG  L T   H + V+ A F   G  ++S   D   K+W
Sbjct: 1592 EDKTVKIWQI-DGHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIW 1640

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  167 bits (422), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 170/344 (49%), Gaps = 17/344 (4%)

Query: 305  RGFTAATVL-PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
            + +T+A V  P++  +  +   ++    +T+ V E +     ++ L G+   +L + F  
Sbjct: 793  QAYTSALVFAPTDSMIKKIFKKEEPGWISTISVVEAEWN-ACTQTLEGHGSSVLSVAF-S 850

Query: 364  EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
             + Q +A  ++ + ++++D +S + +  L GH   V    + A S  +  + +GS D ++
Sbjct: 851  ADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVW---SVAFSPDRERVASGSDDKTI 907

Query: 424  RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483
            ++WD+ S  C     GH G V +VAFS   Q  + SGS DHTIK+W  D  S    Q + 
Sbjct: 908  KIWDAASGTCTQTLEGHGGRVQSVAFSPDGQR-VASGSDDHTIKIW--DAASGTCTQTLE 964

Query: 484  LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
                     HG  + S+A +P+   V +GS D+T  +W         T  GH   +WSV 
Sbjct: 965  --------GHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVA 1016

Query: 544  FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603
            FSP  Q V + S DKTIKIW  + G+C +T EGH   V    F   G ++ S   D  +K
Sbjct: 1017 FSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIK 1076

Query: 604  LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
            +W   +G C  T + H D +W++A     +  A+G  D  + +W
Sbjct: 1077 IWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIW 1120

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	882
255558071	876	U3 small nucleolar RNA-associated protei	0.989	0.996	0.730	0.0
225454728	887	PREDICTED: transducin beta-like protein	0.998	0.993	0.742	0.0
224124136	913	predicted protein [Populus trichocarpa]	0.922	0.891	0.727	0.0
147775469	1616	hypothetical protein VITISV_036512 [Viti	0.953	0.520	0.703	0.0
356513431	883	PREDICTED: transducin beta-like protein	0.992	0.990	0.703	0.0
224144682	853	predicted protein [Populus trichocarpa]	0.956	0.989	0.720	0.0
297811813	878	hypothetical protein ARALYDRAFT_909661 [	0.973	0.978	0.697	0.0
297737288	876	unnamed protein product [Vitis vinifera]	0.980	0.987	0.712	0.0
30686005	876	transducin/WD40 domain-containing protei	0.971	0.978	0.691	0.0
356562728	879	PREDICTED: transducin beta-like protein	0.987	0.990	0.696	0.0

>gi|255558071|ref|XP_002520064.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223540828|gb|EEF42388.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score = 1356 bits (3509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/880 (73%), Positives = 761/880 (86%), Gaps = 7/880 (0%)

Query: 6   LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITA 65
           +KK+Y C P +QQFY GGP  VSSDGSFIACACGE+I IVD +N ++++TIEG ++  TA
Sbjct: 1   MKKNYRCVPSIQQFYSGGPFAVSSDGSFIACACGEAIKIVDSANGAVRATIEGDTEAATA 60

Query: 66  LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK 125
           L LSPDDKL+FS+GHSR+IRVWDLST+KC+RSWKGH+GP +GMACH SGGLLATAGADRK
Sbjct: 61  LTLSPDDKLMFSAGHSRQIRVWDLSTMKCVRSWKGHEGPVMGMACHASGGLLATAGADRK 120

Query: 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185
           VLVWDVDGGFCTH+FKGHKGVVSS++FHPD +K LLFSGSDDATVRVW+L +KKC+ATL+
Sbjct: 121 VLVWDVDGGFCTHFFKGHKGVVSSVMFHPDANKMLLFSGSDDATVRVWNLASKKCIATLE 180

Query: 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245
           +HF+ VTS+ ++ DG TL+SAGRDKVVNLWDL DY+CK+T+PTYE+VE +C I  G+ F 
Sbjct: 181 RHFTTVTSLEVSEDGWTLLSAGRDKVVNLWDLHDYTCKITIPTYEIVEDLCVIHSGTQFS 240

Query: 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSK 304
           S + SY+Q + K +  S  I+FITVGERGIVR+W ++ A CLYEQ SSD+T++ + D+SK
Sbjct: 241 SLIGSYSQLSGKSRNGSSAIYFITVGERGIVRIWTSERAVCLYEQNSSDITVTSDTDESK 300

Query: 305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364
           RGFTA+ +LPS+QG+LCVTADQQ LLY  V  PE+K +L L++RL+GYNEEILD++FLGE
Sbjct: 301 RGFTASVILPSDQGVLCVTADQQFLLYLAVGHPEEKFKLELNRRLIGYNEEILDMRFLGE 360

Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
           EE+ LAVATNIEQ++VYDL SMSCSYVL GH+EIVLCLDTC   SG+ LIVTGSKD++VR
Sbjct: 361 EEKCLAVATNIEQIRVYDLESMSCSYVLPGHTEIVLCLDTCVSRSGRALIVTGSKDHTVR 420

Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
           LWDSESR CVGVGTGHMG VGAVAFSKKL+NF VSGSSD TIKVWS DG+S+DA+Q +NL
Sbjct: 421 LWDSESRNCVGVGTGHMGGVGAVAFSKKLKNFFVSGSSDRTIKVWSLDGISEDADQFVNL 480

Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544
           KAKAVVAAH KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRGIWSVEF
Sbjct: 481 KAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEF 540

Query: 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
           SPVDQ VITASGDKTIKIW+I+DGSCLKTFEGHTSSVLRASFLTRG Q VSCGADGLVKL
Sbjct: 541 SPVDQCVITASGDKTIKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKL 600

Query: 605 WTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEE 664
           WTV+T ECIATYD+HEDK+WALAVGK+TEMFATGG DALVNLW+DSTA+++EEAFRKEEE
Sbjct: 601 WTVKTNECIATYDQHEDKVWALAVGKQTEMFATGGGDALVNLWYDSTASDKEEAFRKEEE 660

Query: 665 AVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKE 724
            VL+GQELENA+L ADYT+AIQ+AFELRRPHKLFELF+ +CRKR A  QIE AL ALGKE
Sbjct: 661 GVLKGQELENALLYADYTRAIQIAFELRRPHKLFELFSQICRKRGAVNQIENALRALGKE 720

Query: 725 EIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFS 784
           E R L EYVREWNTKPKLCHVAQ+VLFQ+FNI PPTEI+EIKG+ ++LEGLIPY+ RHFS
Sbjct: 721 EFRLLFEYVREWNTKPKLCHVAQYVLFQVFNILPPTEILEIKGVGELLEGLIPYSLRHFS 780

Query: 785 RIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIE 844
           RIDRL+RSTFL+DYTL GMSVIEP+TEA    A++ + +NV  +   ++  E   +EQ  
Sbjct: 781 RIDRLLRSTFLVDYTLIGMSVIEPNTEA----AQTDIPTNVTNEETMLLAEEAEEEEQQP 836

Query: 845 S--EGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 882
              + KT SKKRKS+K+++ SHKK +    T+ AAI LQA
Sbjct: 837 EVLKEKTRSKKRKSNKAKDGSHKKVKGTAYTSVAAIPLQA 876

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454728|ref|XP_002272675.1| PREDICTED: transducin beta-like protein 3-like [Vitis vinifera]

 Score = 1338 bits (3464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/888 (74%), Positives = 771/888 (86%), Gaps = 7/888 (0%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           MAS  LKK+Y   P LQQFY GGP  V+SDGSFI CAC ++I IVD SNASI+S +EG S
Sbjct: 1   MASPTLKKNYRSTPALQQFYTGGPFAVASDGSFIVCACDDAIKIVDSSNASIRSVVEGDS 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
            T+TALALSPDD+LLFSS HSR+IRVW+LS+LKC+RSWKGH+GP +GMAC  SGG+LATA
Sbjct: 61  QTVTALALSPDDRLLFSSSHSRQIRVWELSSLKCIRSWKGHEGPVMGMACDASGGVLATA 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240
           VATL++HFS VTS+A++ DG TL+SAGRDKVVNLWDL DYSCKLTVPTYE++E VC I  
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKVVNLWDLHDYSCKLTVPTYEVLEGVCVIHS 240

Query: 241 GSAFDSFLSSYNQQTIKKKR-RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISF 298
            S F S L SY +Q  +KK+  S  I+FITVGERG VR+WN++ A CL+EQ+SSDVT+S 
Sbjct: 241 KSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVCLFEQQSSDVTVSS 300

Query: 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358
           + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+LSKRLVGYNEEI+D
Sbjct: 301 DSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTHSEEMLKLMLSKRLVGYNEEIVD 360

Query: 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418
           +KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH+ IVLCLDTC  SSG+  +VTGS
Sbjct: 361 MKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHTGIVLCLDTCVSSSGRTFVVTGS 420

Query: 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478
           KDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKKL+NF VSGSSD T+KVWS DGLSDD 
Sbjct: 421 KDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKLRNFFVSGSSDRTLKVWSLDGLSDDT 480

Query: 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG 538
           EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRG
Sbjct: 481 EQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG 540

Query: 539 IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598
           +WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRASFLTRG Q+VSCGA
Sbjct: 541 VWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQVVSCGA 600

Query: 599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658
           DGLVKLWT++T ECIATYD+HEDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEA
Sbjct: 601 DGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEA 660

Query: 659 FRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKAL 718
           FRKEEE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q+EKAL
Sbjct: 661 FRKEEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQVEKAL 720

Query: 719 HALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPY 778
           HALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LEG+IPY
Sbjct: 721 HALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLEGIIPY 780

Query: 779 TQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENV 838
           +QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D    EN 
Sbjct: 781 SQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWPSPENA 839

Query: 839 AKEQIES-EG---KTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 882
            +EQ ++ EG   K +SKKRKS KSR+ + KK +    T  +AISLQA
Sbjct: 840 DEEQEQTLEGLKEKASSKKRKSRKSRDRAQKKVKETAYTKISAISLQA 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124136|ref|XP_002319254.1| predicted protein [Populus trichocarpa] gi|222857630|gb|EEE95177.1| predicted protein [Populus trichocarpa]

 Score = 1314 bits (3401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/865 (72%), Positives = 723/865 (83%), Gaps = 51/865 (5%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           M+SL +KK+Y C P LQQFY GGP  VSSDGSFIACA G++I I+D SNASIK++IE  +
Sbjct: 1   MSSLQIKKNYRCVPSLQQFYSGGPFAVSSDGSFIACANGDAIKILDSSNASIKASIEVDT 60

Query: 61  DT-ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT 119
           D+ +TALAL P+D+ LFS+GHSR IRVWDLST KC+RSWKGHDGP + MACH SGGLLAT
Sbjct: 61  DSGLTALALDPNDRFLFSAGHSRLIRVWDLSTFKCIRSWKGHDGPVMSMACHASGGLLAT 120

Query: 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
           AGADRKVLVWDVDGGFCTHYFKGHK VV+SI+FHPDT+K+LLFSGS DATVRVWDLLAKK
Sbjct: 121 AGADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKK 180

Query: 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDK----------------------------- 210
           C+ATL++HFS +TSMA++ DG TL++AGRDK                             
Sbjct: 181 CIATLERHFSALTSMAVSEDGWTLLTAGRDKTLDGTQPTRGLDQSKVKTIEEGLIRPHQV 240

Query: 211 ----------------VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254
                           VVNLWDL DY CK+T+PTYE++E +C +  G+   SFL S NQQ
Sbjct: 241 KNPGRPGTQSTRDKIHVVNLWDLHDYVCKMTIPTYEVLEGLCVVKSGTELASFLGSCNQQ 300

Query: 255 TIKKKRRSLEIHFITVGERGIVRMWNADSAC---LYEQKSSDVTISFEMDDSKRGFTAAT 311
           + K++ RS  I+F+TVGERGIVR+W  DS C   LYEQKSSDV +S + DDS RGFTAA 
Sbjct: 301 SGKRRDRSSPIYFVTVGERGIVRIW--DSECGVSLYEQKSSDVAVSSDTDDSLRGFTAAV 358

Query: 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371
           +LP +QGLLCVT D   L Y+ +  PE+K +LIL+KRLVGYNEEILD++FLGEEE++LAV
Sbjct: 359 ILPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILDMRFLGEEEKFLAV 418

Query: 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431
           ATN+EQVQVYD+ SMSCSYVLAGH+EIVLCLDTC  SSG+ L+ TGSKDNSVRLW+SESR
Sbjct: 419 ATNLEQVQVYDMESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLATGSKDNSVRLWNSESR 478

Query: 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491
            C+GVGTGHMG VGAVAFSKK +NF VSGSSD TIKVWS DG+SDDA+QP+NLKAKAVVA
Sbjct: 479 NCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDADQPINLKAKAVVA 538

Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
           AH KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRGIWSVEFSPVDQ V
Sbjct: 539 AHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCV 598

Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
           ITASGDKTIK+W+I+DGSCLKTFEGHTSSVLRASFLTRG+Q VSCGADGLVKLWTV+T E
Sbjct: 599 ITASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGADGLVKLWTVKTNE 658

Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQE 671
           C ATYD+HEDK+WALA+GKKTEMFATGG DA+VNLW+DSTA+++EEAFRKEEE VLRGQE
Sbjct: 659 CTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEAFRKEEEGVLRGQE 718

Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 731
           LENAVLDADY KAIQ+AFEL RP+KLFELFA +CRK+E   QIEKALH LGKEEI QL +
Sbjct: 719 LENAVLDADYIKAIQIAFELHRPNKLFELFAELCRKKEGSSQIEKALHVLGKEEIHQLFQ 778

Query: 732 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791
           YVREWNTKPKLCHVAQ+VLF +FNI PPTEI+EIKGI ++LEGLIPY+QRH SRIDRL+R
Sbjct: 779 YVREWNTKPKLCHVAQYVLFGVFNILPPTEILEIKGIGELLEGLIPYSQRHLSRIDRLLR 838

Query: 792 STFLLDYTLTGMSVIEPDTEAREVK 816
           STFLLDYTL GMSVIEPDT A E+K
Sbjct: 839 STFLLDYTLHGMSVIEPDTNATEMK 863

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775469|emb|CAN76090.1| hypothetical protein VITISV_036512 [Vitis vinifera]

 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/906 (70%), Positives = 741/906 (81%), Gaps = 65/906 (7%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           MAS  LKK+Y   P LQQFY GGP  V+SDGSFI CAC ++I IVD SNASI+S +EG S
Sbjct: 1   MASPTLKKNYRSTPALQQFYTGGPFAVASDGSFIVCACDDAIKIVDSSNASIRSVVEGDS 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
            T+TALALSPDD+LLFSS HSR+IRVW+LS+LKC+RSWKGH+GP +GMAC  SGG+LATA
Sbjct: 61  QTVTALALSPDDRLLFSSSHSRQIRVWELSSLKCIRSWKGHEGPVMGMACDASGGVLATA 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDK-------------VVNLWDLRDYSCKLTVP 227
           VATL++HFS VTS+A++ DG TL+SAGRDK             VVNLWDL DYSCKLTVP
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKAGLHLFXIFTADMVVNLWDLHDYSCKLTVP 240

Query: 228 TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR-RSLEIHFITVGERGIVRMWNADSA-C 285
           TYE++E VC I   S F S L SY +Q  +KK+  S  I+FITVGERG VR+WN++ A C
Sbjct: 241 TYEVLEGVCVIHSKSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVC 300

Query: 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345
           L+EQ+SSDVT+S + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+L
Sbjct: 301 LFEQQSSDVTVSSDSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTXSEEMLKLML 360

Query: 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405
           SKRLVGYNEEI+D+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH  IVLCLDTC
Sbjct: 361 SKRLVGYNEEIVDMKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHXGIVLCLDTC 420

Query: 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465
             SSG+  +VTGSKDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKK +NF VSGSSD T
Sbjct: 421 VSSSGRTFVVTGSKDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKXRNFFVSGSSDRT 480

Query: 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525
           +KVWS DGLSDD EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPD
Sbjct: 481 LKVWSLDGLSDDTEQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPD 540

Query: 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 585
           LVSVV  +GHKRG+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRAS
Sbjct: 541 LVSVVVLKGHKRGVWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRAS 600

Query: 586 FLTRGAQIVSC--------------------------GADGLVKLWTVRTGECIATYDKH 619
           FLTRG Q+VSC                          GADGLVKLWT++T ECIATYD+H
Sbjct: 601 FLTRGTQVVSCGNGAYCYLIGLCIIPITYVFNNPSFSGADGLVKLWTIKTNECIATYDQH 660

Query: 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE----------------- 662
           EDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEAFRKE                 
Sbjct: 661 EDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEAFRKECNEKFEIGIMWHQVHKT 720

Query: 663 ------EEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEK 716
                 EE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q+EK
Sbjct: 721 XNENSKEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQVEK 780

Query: 717 ALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLI 776
           ALHALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LEG+I
Sbjct: 781 ALHALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLEGII 840

Query: 777 PYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITE 836
           PY+QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D    E
Sbjct: 841 PYSQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWPSPE 899

Query: 837 NVAKEQ 842
           N  +EQ
Sbjct: 900 NADEEQ 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513431|ref|XP_003525417.1| PREDICTED: transducin beta-like protein 3-like [Glycine max]

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/890 (70%), Positives = 739/890 (83%), Gaps = 15/890 (1%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           M  L LK +Y C P LQQFY GGP VVSSD SFIACACGESI IVD + A+I+ST+   S
Sbjct: 1   MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLGADS 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
           ++ TALALSPDD+LLFSSGHSR+I+VWDLSTLKC+RSWKGH+GP + M CHPSGGLLAT 
Sbjct: 61  ESFTALALSPDDRLLFSSGHSRQIKVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATG 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 175
           GADRKVLVWDVDGG+CTHYFKGH GVVS ++FHPD +K LLFSGSDD    ATVRVWD+ 
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHPDPEKQLLFSGSDDGGDHATVRVWDIS 180

Query: 176 --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 233
               K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL DYS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHDYSSKKTVITNEAVE 240

Query: 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 292
           AVC +  GS F S L SY QQ +KK+  S   +FITVGERGIVR+WN+  A C++EQK+S
Sbjct: 241 AVCVLGSGSPFASSLDSY-QQNLKKRDGSQIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
           DVT + + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ +E  E+ ++L L+KRLVGY
Sbjct: 300 DVTANIDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LECTEELLQLNLTKRLVGY 358

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
           NEEI+D+KF+G++E++LA+ATN+EQV+VYDL+SMSCSYVL+GH+EI+LCLDTC  SSGK 
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQVRVYDLASMSCSYVLSGHTEIILCLDTCVSSSGKT 418

Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
           LIVTGSKDNSVRLW+SES  C+GVG GHMGAVGA+AFSK+ Q+F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWESESANCIGVGIGHMGAVGAIAFSKRKQDFFVSGSSDHTLKVWSMD 478

Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
           GLSD+   P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLSDNMTMPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538

Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
           +GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598

Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
           IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE  ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658

Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 712
           A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CRKREAE 
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAED 718

Query: 713 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 772
            +++AL  LG EE+R L  Y+REWNTKPKLC+V+QFVLF++F+I PPT+I++IKGI + L
Sbjct: 719 HMDRALKGLGSEELRILFNYIREWNTKPKLCYVSQFVLFRVFSIFPPTDIVQIKGIGEFL 778

Query: 773 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDV 832
           EGLIPY+QRHF RIDRLVRSTFLLDY L+GMSVIEP  +  E KAE L+ S +     D+
Sbjct: 779 EGLIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQVQPTESKAELLLQSEI-----DI 833

Query: 833 VITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 882
              EN  +++  +   TASKKRKS+KS+  SHKK +        +I LQA
Sbjct: 834 PDKENGIEKKDHTHEITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA 883

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144682|ref|XP_002325374.1| predicted protein [Populus trichocarpa] gi|222862249|gb|EEE99755.1| predicted protein [Populus trichocarpa]

 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/872 (72%), Positives = 728/872 (83%), Gaps = 28/872 (3%)

Query: 15  VLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT-ITALALSPDDK 73
           V +QFY GGP  VSSDGSFIAC+ G++I IVD  NASIK++IE  +D  +TALALSPDDK
Sbjct: 4   VTRQFYSGGPFAVSSDGSFIACSNGDAIKIVDSPNASIKASIEVDTDAGVTALALSPDDK 63

Query: 74  LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133
            LFS+GHSR IRVWDLST KC     GHDGP + MACH SGGLLATAGADRKVLVWDVDG
Sbjct: 64  FLFSAGHSRLIRVWDLSTFKC-----GHDGPVMAMACHASGGLLATAGADRKVLVWDVDG 118

Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 193
           GFCTHYFKGHK VV++++FHPDT+K+LLFSGS DATVRVWDLLAKKC ATL++HFS +TS
Sbjct: 119 GFCTHYFKGHKDVVTTLMFHPDTNKTLLFSGSADATVRVWDLLAKKCFATLERHFSSLTS 178

Query: 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253
           MA++ DG TL++AGRDKVVNLW L DY  K+T+PTYE++E +C +  G+   SFL S N 
Sbjct: 179 MAVSEDGWTLLTAGRDKVVNLWHLHDYVFKMTIPTYEVLEGLCVVKSGTELASFLGSCNL 238

Query: 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313
           Q+ K++ RS  I+FITVGERG+V      + CLYEQKSSDVT+S + DDS RGFTAA +L
Sbjct: 239 QSGKRRDRSSSIYFITVGERGLV------AVCLYEQKSSDVTVSSDTDDSPRGFTAAVIL 292

Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
           P +QGLLCVT D Q L Y+ V   E+K +L+LSKRLVGYNEEILD++FLGEEE++LAVAT
Sbjct: 293 PLDQGLLCVTVDHQFLFYSLVVHLEEKFKLMLSKRLVGYNEEILDMRFLGEEEKFLAVAT 352

Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
           N+EQVQVYDL SMSCSYVLAGH+EIVLCLDTC  SSG+ L+VTGSKDNSVRLW+SES  C
Sbjct: 353 NLEQVQVYDLESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLVTGSKDNSVRLWNSESINC 412

Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
           +GVG GHMG VGAVAFSKK +NF VSGSSD TIKVWS DG+SDDA+QP+NLKAKAVVAAH
Sbjct: 413 IGVGMGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSIDGISDDADQPINLKAKAVVAAH 472

Query: 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
            KDINSLA+APND+LVC+GSQDRTACVWRLPDLVSVV  +GHKRGIWSVEFSPVDQ VIT
Sbjct: 473 DKDINSLAIAPNDTLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCVIT 532

Query: 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
           ASGDKTIK+W+I++GSCLKTFEGHTSSVLRASFLTRG Q VSCGADGLVKLWTV+T ECI
Sbjct: 533 ASGDKTIKMWAIANGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKLWTVKTNECI 592

Query: 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELE 673
           ATYD+HEDK+WALA+G+KTEMFATGG DA+VNLW+DSTA+++ EAFRKEEE VLRGQELE
Sbjct: 593 ATYDQHEDKVWALAIGRKTEMFATGGGDAVVNLWYDSTASDKAEAFRKEEEGVLRGQELE 652

Query: 674 NAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYV 733
           NAVLDADY KAIQ+AFEL RPHKLFELFA +CRK     QIE AL ALGKEEI  L EY+
Sbjct: 653 NAVLDADYNKAIQIAFELHRPHKLFELFAELCRKDGGN-QIETALRALGKEEIHLLFEYI 711

Query: 734 REWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRST 793
           REWNTKPK CHVAQ+VLF +FNI PPTEI+EI+GI ++LEGLIPY+QRHFSRIDRLVRST
Sbjct: 712 REWNTKPKFCHVAQYVLFGVFNIFPPTEILEIRGIGELLEGLIPYSQRHFSRIDRLVRST 771

Query: 794 FLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQ-IESE---GKT 849
           FLLDYTL GMSVIEPDT A E+            DA++ ++ E   +EQ + SE    K 
Sbjct: 772 FLLDYTLHGMSVIEPDTNATEM-----------NDADNKLLVEKGDQEQELTSEMLKEKA 820

Query: 850 ASKKRKSHKSRESSHKKERRADQTNAAAISLQ 881
            SKKRK +KS+++S KK + A  T+ A I L+
Sbjct: 821 LSKKRKPNKSKDTSRKKVKGAAYTSLAPIPLK 852

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811813|ref|XP_002873790.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata] gi|297319627|gb|EFH50049.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata]

 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/872 (69%), Positives = 734/872 (84%), Gaps = 13/872 (1%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           MA   LKK+Y C   L+QFYGGGP +VSSDGSFIACACG++INIVD +++S+KSTIEG S
Sbjct: 1   MAPQSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDAINIVDSTDSSVKSTIEGES 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
           DT+TALALSPDD+LLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61  DTLTALALSPDDRLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
           GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT+K++LFSGSDDATVRVWDLLAK  
Sbjct: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTNKNILFSGSDDATVRVWDLLAKNT 180

Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
             KC+A L+KHFS VTS+A++ DG  L SAGRDKVVNLWDL DYSCK T+ TYE++EAV 
Sbjct: 181 EKKCLAILEKHFSAVTSIALSEDGWNLFSAGRDKVVNLWDLHDYSCKTTIATYEVLEAVT 240

Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
           A+  G+ F SF++S +Q+  KKK    +  +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 AVSSGTPFASFVASLDQKKSKKKESDSQGTYFITVGERGVVRIWKSEGSICLYEQKSSDI 300

Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
           T+S + ++SKRGFTAA +L S++GLLCVTADQQ   Y+ VE  E+  EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLSSDRGLLCVTADQQFFFYSVVENVEES-ELVLSKRLVGYNE 359

Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
           EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E++L LDTC  SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVILSLDTCVSSSGNVLI 419

Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
           VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK  +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479

Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
           S+ +E P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEGSEDPVNLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
           HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITEGTQFV 599

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
           SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659

Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
           +E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFELRRPHK+FELFA +CRKRE++ QI
Sbjct: 660 KEDEFRKEEEAILRGQELENAVLDAEYTKAIRLAFELRRPHKVFELFAGLCRKRESDEQI 719

Query: 715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
            KAL  L KEE R L EYVREWNTKPKLCH+AQFVL+Q FNI PPTEI+++KGI ++LEG
Sbjct: 720 VKALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYQTFNILPPTEIVQVKGIGELLEG 779

Query: 775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVI 834
           LIPY+QRHF+RIDR VRS+FLLDYTL  MSVI+P+TE    K +   +  V      +  
Sbjct: 780 LIPYSQRHFNRIDRFVRSSFLLDYTLGEMSVIDPETETEYPKDKKKKEKEV------IAA 833

Query: 835 TENVAKEQIESEGKTASKKRKSHKSRESSHKK 866
              + ++  E   +T S+KRKS KS++ S+KK
Sbjct: 834 VSAMEQDTEELTKETPSRKRKSQKSKDKSNKK 865

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737288|emb|CBI26489.3| unnamed protein product [Vitis vinifera]

 Score = 1263 bits (3268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/893 (71%), Positives = 751/893 (84%), Gaps = 28/893 (3%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           MAS  LKK+Y   P LQQFY GGP  V+SDGSFI CAC ++I IVD SNASI+S +EG S
Sbjct: 1   MASPTLKKNYRSTPALQQFYTGGPFAVASDGSFIVCACDDAIKIVDSSNASIRSVVEGDS 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
            T+TALALSPDD+LLFSS HSR+IRVW+LS+LKC+RSWKGH+GP +GMAC  SGG+LATA
Sbjct: 61  QTVTALALSPDDRLLFSSSHSRQIRVWELSSLKCIRSWKGHEGPVMGMACDASGGVLATA 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLW-----DLRDYSCKLTVPTYEMVEA 234
           VATL++HFS VTS+A++ DG TL+SAGRDK  ++L+     D+    C  +     M E 
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKAGLHLFFIFTADMSSSPCFDSKDQNNMAE- 239

Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSD 293
              +P    F S L ++          S  I+FITVGERG VR+WN++ A CL+EQ+SSD
Sbjct: 240 ---LP---FFPSSLLAFE---------SPAIYFITVGERGTVRIWNSEGAVCLFEQQSSD 284

Query: 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353
           VT+S + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+LSKRLVGYN
Sbjct: 285 VTVSSDSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTHSEEMLKLMLSKRLVGYN 344

Query: 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413
           EEI+D+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH+ IVLCLDTC  SSG+  
Sbjct: 345 EEIVDMKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHTGIVLCLDTCVSSSGRTF 404

Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
           +VTGSKDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKKL+NF VSGSSD T+KVWS DG
Sbjct: 405 VVTGSKDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKLRNFFVSGSSDRTLKVWSLDG 464

Query: 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533
           LSDD EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPDLVSVV  +
Sbjct: 465 LSDDTEQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLK 524

Query: 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI 593
           GHKRG+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRASFLTRG Q+
Sbjct: 525 GHKRGVWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQV 584

Query: 594 VSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653
           VSCGADGLVKLWT++T ECIATYD+HEDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+
Sbjct: 585 VSCGADGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVVNLWHDSTAS 644

Query: 654 EREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQ 713
           ++EEAFRKEEE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q
Sbjct: 645 DKEEAFRKEEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQ 704

Query: 714 IEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLE 773
           +EKALHALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LE
Sbjct: 705 VEKALHALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLE 764

Query: 774 GLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVV 833
           G+IPY+QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D  
Sbjct: 765 GIIPYSQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWP 823

Query: 834 ITENVAKEQIES-EG---KTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 882
             EN  +EQ ++ EG   K +SKKRKS KSR+ + KK +    T  +AISLQA
Sbjct: 824 SPENADEEQEQTLEGLKEKASSKKRKSRKSRDRAQKKVKETAYTKISAISLQA 876

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686005|ref|NP_568338.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9755727|emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gi|332004950|gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score = 1249 bits (3232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/872 (69%), Positives = 730/872 (83%), Gaps = 15/872 (1%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           MA   LKK+Y C   L+QFYGGGP +VSSDGSFIACACG+ INIVD +++S+KSTIEG S
Sbjct: 1   MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
           DT+TALALSPDDKLLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61  DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
           GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK  
Sbjct: 121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180

Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
             KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV 
Sbjct: 181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240

Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
            +  G+ F SF++S +Q+  KKK    +  +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300

Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
           T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ   Y+ VE  E+  EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEE-TELVLSKRLVGYNE 359

Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
           EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC  SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419

Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
           VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK  +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479

Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
           S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
           HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
           SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659

Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
           +E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CRKR+++ QI
Sbjct: 660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCRKRDSDEQI 719

Query: 715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
            KAL  L KEE R L EYVREWNTKPKLCH+AQFVL++ FNI PPTEI+++KGI ++LEG
Sbjct: 720 VKALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYKTFNILPPTEIVQVKGIGELLEG 779

Query: 775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVI 834
           LIPY+QRHFSRIDR VRS+FLLDYTL  MSVI+P+T   E   +            +  +
Sbjct: 780 LIPYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETEYPKDEK--------KKEKDV 831

Query: 835 TENVAKEQIESEGKTASKKRKSHKSRESSHKK 866
              + ++  E + +T S+KRKS KS+  S+KK
Sbjct: 832 IAAMEQDTDELKQETPSRKRKSQKSKGKSNKK 863

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562728|ref|XP_003549621.1| PREDICTED: transducin beta-like protein 3-like [Glycine max]

 Score = 1243 bits (3216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/890 (69%), Positives = 724/890 (81%), Gaps = 19/890 (2%)

Query: 1   MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
           M  L LK +Y C P LQQFY GGP VVSSD SFIACACGESI IVD + A+I+ST++  S
Sbjct: 1   MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLDADS 60

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
           ++ TALALSPDD+LLFSSGHSR+IRVWDLSTLKC+RSWKGH+GP + M CHPSGGLLAT 
Sbjct: 61  ESFTALALSPDDRLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATG 120

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 175
           GADRKVLVWDVDGG+CTHYFKGH GVVS ++FH D +K LLFSGSDD    ATVRVWD+ 
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHSDPEKQLLFSGSDDGGDHATVRVWDIS 180

Query: 176 --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 233
               K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL  YS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHGYSGKKTVITNEAVE 240

Query: 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 292
           AVC I  GS F S L  Y QQ  K    S   +FITVGERGIVR+WN+  A C++EQK+S
Sbjct: 241 AVCVIGAGSPFASSLDLY-QQNAKIHDGSEIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
           DVT   + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ ++  E+ ++L L+KRLVGY
Sbjct: 300 DVTAGMDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LDFTEQLLQLNLTKRLVGY 358

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
           NEEI+D+KF+G++E++LA+ATN+EQ++VYDLSSMSCSYVL+GH+EIVLCLD+C  SSGK 
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQIRVYDLSSMSCSYVLSGHTEIVLCLDSCVSSSGKP 418

Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
           LIVTGSKDNSVRLW+ ES  C+GVG GHMGAVGA+AFSK+ ++F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWEPESANCIGVGIGHMGAVGAIAFSKRKRDFFVSGSSDHTLKVWSMD 478

Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
           GL D+   P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLLDNMTVPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538

Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
           +GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598

Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
           IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE  ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658

Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 712
           A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CRKREAE 
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAED 718

Query: 713 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 772
            +++AL  L  EE+R L  YVREWNTKPKLC+V+QFVLF++F I PPT+I++IKGI + L
Sbjct: 719 HMDRALKGLDSEELRILFNYVREWNTKPKLCYVSQFVLFRVFCIFPPTDIVQIKGIGEYL 778

Query: 773 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDV 832
           EGLIPY+QRHF RIDRLVRSTFLLDY L+GMSVIEP  +  E K E L+ S +     D 
Sbjct: 779 EGLIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQAQLTESKTELLLQSEIGIPDPD- 837

Query: 833 VITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 882
              EN   E       TASKKRKS+KS+  SHKK +        +I LQA
Sbjct: 838 --KENDTNE------ITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA 879

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	882
TAIR|locus:2148965	876	TOZ "AT5G16750" [Arabidopsis t	0.961	0.968	0.688	0.0
UNIPROTKB|F1NM37	812	TBL3 "Uncharacterized protein"	0.880	0.956	0.382	1.9e-161
UNIPROTKB|F1MNS4	800	TBL3 "Transducin beta-like pro	0.596	0.657	0.398	2.6e-158
UNIPROTKB|Q2KJJ5	800	TBL3 "Transducin beta-like pro	0.596	0.657	0.398	2.6e-158
RGD|1305142	800	Tbl3 "transducin (beta)-like 3	0.590	0.651	0.393	8.8e-158
UNIPROTKB|F1Q065	803	TBL3 "Uncharacterized protein"	0.595	0.653	0.394	8.8e-158
MGI|MGI:2384863	801	Tbl3 "transducin (beta)-like 3	0.596	0.656	0.395	3e-157
UNIPROTKB|Q12788	808	TBL3 "Transducin beta-like pro	0.599	0.654	0.394	6.3e-155
ZFIN|ZDB-GENE-041114-104	898	tbl3 "transducin (beta)-like 3	0.707	0.694	0.428	8e-155
DICTYBASE|DDB_G0276283	902	utp13 "U3 snoRNP protein" [Dic	0.920	0.900	0.336	2e-136

TAIR|locus:2148965 TOZ "AT5G16750" [Arabidopsis thaliana (taxid:3702)]

 Score = 3119 (1103.0 bits), Expect = 0., P = 0.
 Identities = 593/861 (68%), Positives = 715/861 (83%)

Query:     1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
             MA   LKK+Y C   L+QFYGGGP +VSSDGSFIACACG+ INIVD +++S+KSTIEG S
Sbjct:     1 MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES 60

Query:    61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
             DT+TALALSPDDKLLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct:    61 DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120

Query:   121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
             GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK  
Sbjct:   121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180

Query:   179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
               KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV 
Sbjct:   181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240

Query:   237 AIPPGSAFDSFLSSYNQQTIKKKRR-SLEIHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
              +  G+ F SF++S +Q+  KKK   S   +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct:   241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300

Query:   295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
             T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ   Y+ VE  E+  EL+LSKRLVGYNE
Sbjct:   301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEET-ELVLSKRLVGYNE 359

Query:   355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
             EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC  SSG +LI
Sbjct:   360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419

Query:   415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
             VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK  +F VSGS D T+KVWS DG+
Sbjct:   420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479

Query:   475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
             S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct:   480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539

Query:   535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
             HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct:   540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599

Query:   595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXX 654
             SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDST   
Sbjct:   600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659

Query:   655 XXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
                        +LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CRKR+++ QI
Sbjct:   660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCRKRDSDEQI 719

Query:   715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
              KAL  L KEE R L EYVREWNTKPKLCH+AQFVL++ FNI PPTEI+++KGI ++LEG
Sbjct:   720 VKALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYKTFNILPPTEIVQVKGIGELLEG 779

Query:   775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDT-EAR----EVKAESLVDSNVHQDA 829
             LIPY+QRHFSRIDR VRS+FLLDYTL  MSVI+P+T E      E K E  V + + QD 
Sbjct:   780 LIPYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETEYPKDEKKKEKDVIAAMEQDT 839

Query:   830 NDVVI-TENVAKEQIESEGKT 849
             +++   T +  ++  +S+GK+
Sbjct:   840 DELKQETPSRKRKSQKSKGKS 860

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009880 "embryonic pattern specification" evidence=RCA;IMP

GO:0051301 "cell division" evidence=RCA;IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|F1NM37 TBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
 Identities = 310/811 (38%), Positives = 478/811 (58%)

Query:     7 KKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIE-GGSDTITA 65
             K +Y     ++ FY GG + VS DG F+ C CG  +N++D+   ++  ++E    + IT+
Sbjct:    13 KSNYAVSRRIEPFYKGGRVQVSRDGKFMFCPCGTKLNVIDVETGALLHSLEQDDQEDITS 72

Query:    66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADR 124
               LSPDD++L +   +  ++ W+    +C+R+WK  H  P   M    +  LLAT G D 
Sbjct:    73 FVLSPDDEVLVTGSRALLLKQWNWRENRCVRTWKAVHIAPVATMVFDSTSTLLATGGCDS 132

Query:   125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
              + +WD+   +CTH  KG  GVV  + FHPD  +  LFS S D  +R+WDL + KCVA L
Sbjct:   133 TIKIWDMIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSMDYKIRIWDLNSSKCVAVL 192

Query:   185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244
             D HFS VTS+A T+DG+TLIS+GRDK+  +W+L+      T+P YE VEA   +P    F
Sbjct:   193 DGHFSAVTSLAFTADGNTLISSGRDKICMVWNLKTRESIRTIPIYESVEAAVLLPEQGDF 252

Query:   245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFEMDDS 303
                    +Q  +KK+     +HF+T G +G++++W  A +AC+Y Q      +  E + S
Sbjct:   253 -------SQLGVKKQG----LHFLTAGSKGVLKVWEVATAACVYSQPVPFEPVESEEEAS 301

Query:   304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
             +   T   ++P    ++ V+ +  ++ Y           L L K+L GYN+E+LD+KFLG
Sbjct:   302 EHSLTHCMLVPERNEIVTVSVEHNIVFYDA-------QTLQLRKQLAGYNDEVLDVKFLG 354

Query:   364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
               + ++ VATN  Q++V++LS+  C  +L GH+E +L LD      G ++ V+ +KD S+
Sbjct:   355 PGDSHIVVATNSPQLKVFELSTSHCQ-ILYGHTETILALDV--FRKG-LMFVSCAKDKSI 410

Query:   424 RLW--DSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGLSDDAE 479
             R+W  + + R  CV  G GH   VGAV+ S+  ++F+V+ S D TIKVW+  + L+  A+
Sbjct:   411 RVWRMNKDGRVVCVAQGLGHAHGVGAVSCSRLKESFVVTSSQDCTIKVWNIPESLTSKAK 470

Query:   480 Q-----PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
                   P  L A+     H KDINS+AV+PND L+ TGSQDR A +W  PD   +  F G
Sbjct:   471 AALISGPETLHAQMTERGHDKDINSVAVSPNDKLIATGSQDRLAKLWSCPDCSLLGVFTG 530

Query:   535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
             HKRGIW V+FSPVDQ++ T+S D T+K+W + D SCLKTFEGH +SVL+  F++RG Q++
Sbjct:   531 HKRGIWCVQFSPVDQILATSSADGTLKLWGLQDFSCLKTFEGHDASVLKIIFVSRGTQLL 590

Query:   595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXX 654
             S G+DGL+KLWT++T EC+ T D HEDKIW L   K+ +M  T  SD+ + LW D T   
Sbjct:   591 SGGSDGLLKLWTIKTNECVKTLDGHEDKIWGLHTNKQDDMVVTASSDSSITLWKDVTEIE 650

Query:   655 XXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 714
                        +++ QEL N + +  Y KA+ +A  L RPH +  +  ++ ++ +   ++
Sbjct:   651 QEEAQAKREEQIMKEQELSNLLHEKRYLKALGLAISLDRPHTVLTVIKAILKESDGRKRL 710

Query:   715 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 774
             E+ +  L K++   +L ++  WNT  + CH AQ V+  L     P  +++  GI   +E 
Sbjct:   711 EENIARLRKDQKEAVLTFLVTWNTNSRNCHEAQAVIETLLKHEAPDNLLQYSGIKSAVES 770

Query:   775 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 805
             L+PYT+RHF R+ RL++++  +D+    M +
Sbjct:   771 LLPYTERHFQRLSRLLQASMFIDFMWQNMKL 801

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1MNS4 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)]

 Score = 1046 (373.3 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 221/554 (39%), Positives = 328/554 (59%)

Query:   261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
             +S  +HF+T G++G +R+W A S  C++ Q+         +    R  T  T+  +   L
Sbjct:   256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307

Query:   320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
             L VTAD  LLLY           L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   308 LSVTADHNLLLYDA-------HSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 436
             V+DL + +C  +L GH++IVL LD      G+ L  + +KD S+R+W    S    CV  
Sbjct:   361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416

Query:   437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
             G+GH  +VG +  S+  + FLV+GS D T+K+W      LS        P+ L+A+A   
Sbjct:   417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQR 476

Query:   492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
              H KDINS+AVAPND L+ TGSQDRTA +W LP    + TF GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536

Query:   552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596

Query:   612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656

Query:   672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 731
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLETTVLQLRRDQKEALLR 716

Query:   732 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791
             +   WNT  + CH AQ VL  L     P E++   G+   LEGL+PYT+RHF R+ R+++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEGLLPYTERHFQRLSRMLQ 776

Query:   792 STFLLDYTLTGMSV 805
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q2KJJ5 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)]

 Score = 1046 (373.3 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 221/554 (39%), Positives = 328/554 (59%)

Query:   261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
             +S  +HF+T G++G +R+W A S  C++ Q+         +    R  T  T+  +   L
Sbjct:   256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307

Query:   320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
             L VTAD  LLLY           L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   308 LSVTADHNLLLYDA-------RSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 436
             V+DL + +C  +L GH++IVL LD      G+ L  + +KD S+R+W    S    CV  
Sbjct:   361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416

Query:   437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
             G+GH  +VG +  S+  + FLV+GS D T+K+W      LS        P+ L+A+A   
Sbjct:   417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQH 476

Query:   492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
              H KDINS+AVAPND L+ TGSQDRTA +W LP    + TF GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536

Query:   552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596

Query:   612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656

Query:   672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 731
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLETTVLQLRRDQKEALLR 716

Query:   732 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791
             +   WNT  + CH AQ VL  L     P E++   G+   LEGL+PYT+RHF R+ R+++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEGLLPYTERHFQRLSRMLQ 776

Query:   792 STFLLDYTLTGMSV 805
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|1305142 Tbl3 "transducin (beta)-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 1046 (373.3 bits), Expect = 8.8e-158, Sum P(2) = 8.8e-158
 Identities = 217/551 (39%), Positives = 330/551 (59%)

Query:   265 IHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323
             +HF+T G++GI+R+W A S  C+Y Q         +M   ++  T  T+  +   LL VT
Sbjct:   260 LHFLTAGDQGILRVWEAASGQCVYTQP--------QMSGLRQELTHCTLARAAGLLLTVT 311

Query:   324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
             AD  LLLY       +   L L K+  GY+EE+LD++FLG  + ++ VA+N   ++V++L
Sbjct:   312 ADHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPNDSHIIVASNSPCLKVFEL 364

Query:   384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGH 440
              +++C  +L GH++IVL LD      G  L  + +KD S+R+W         CV  G+GH
Sbjct:   365 QTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWRMNKAGQVACVAQGSGH 420

Query:   441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL-----SDDAEQPMNLKAKAVVAAHG 494
               +VG +  S+  ++FLV+GS D T+K+W   + L     + D +  + L+A++    H 
Sbjct:   421 THSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSKNTASDGDL-IPLQAQSTQRCHD 479

Query:   495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             KDINSLAV+PND L+ TGSQDRTA +W LP    +  F GH+RG+W+V+FSP DQV+ TA
Sbjct:   480 KDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWNVQFSPTDQVLATA 539

Query:   555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
             S D TIK+W++ D SCLKTFEGH +SVL+ +F++RGAQ++S G+DGL+KLWT+++ EC+ 
Sbjct:   540 SADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQLLSSGSDGLLKLWTIKSNECVR 599

Query:   615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELEN 674
             T D HEDK+W L   +  +   TGGSD+ + LW D T              V++ QEL+N
Sbjct:   600 TLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDN 659

Query:   675 AVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVR 734
              + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL +  
Sbjct:   660 LLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCI 719

Query:   735 EWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTF 794
              WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R +++  
Sbjct:   720 TWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGALEALLPYTERHFQRLSRTLQAAT 779

Query:   795 LLDYTLTGMSV 805
              LD+    M +
Sbjct:   780 FLDFLWHNMKL 790

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|F1Q065 TBL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1039 (370.8 bits), Expect = 8.8e-158, Sum P(2) = 8.8e-158
 Identities = 220/557 (39%), Positives = 328/557 (58%)

Query:   261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
             +S  +HF+T G++G++R+W A S  C+Y Q         +    ++G T  T+  S   L
Sbjct:   253 KSKGLHFLTAGDQGLLRVWEAASGQCVYAQP--------QPPGPRQGLTHCTLAQSAGLL 304

Query:   320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
             L VT D  LLLY       +   L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   305 LSVTTDHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPEDSHIVVASNSPSLK 357

Query:   380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW--DSESR-CCVGV 436
             V++L +M+C  +L GH++IVL LD      G+ L  + +KD S+ +W  +   R  CV  
Sbjct:   358 VFELQTMTCQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSICIWRMNKAGRVACVAQ 413

Query:   437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD------GLSDDAEQPMNLKAKAVV 490
             G+GH  +VG +  S+  + FLV+GS D T+K+W         G + D+  P+ L+A+A  
Sbjct:   414 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPIPEALLSKGTAPDSG-PILLQAQATQ 472

Query:   491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550
               H KDINS+AVAPND L+ TGSQDRTA +W LP    +  F GH+RG+W V+FSP+DQV
Sbjct:   473 RCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQV 532

Query:   551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS--CGADGLVKLWTVR 608
             + TAS D TIK+W++ D SCLKTFEGH +SVL+  F++RG Q++S   G+DGLVKLWT++
Sbjct:   533 LATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGTQLLSRPSGSDGLVKLWTIK 592

Query:   609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLR 668
               EC+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++
Sbjct:   593 NNECVKTLDAHEDKVWGLHCSRLDDRALTGASDSCVILWKDVTEEEQSEEQARREEEVVK 652

Query:   669 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQ 728
              QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++   +  L +++   
Sbjct:   653 QQELDNLLYEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACKKLGATVLRLRRDQKEA 712

Query:   729 LLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDR 788
             LL +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R
Sbjct:   713 LLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYPGVQASLEALLPYTERHFQRLSR 772

Query:   789 LVRSTFLLDYTLTGMSV 805
              +++   LD+    M +
Sbjct:   773 TLQAATFLDFLWHNMKL 789

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

MGI|MGI:2384863 Tbl3 "transducin (beta)-like 3" [Mus musculus (taxid:10090)]

 Score = 1052 (375.4 bits), Expect = 3.0e-157, Sum P(2) = 3.0e-157
 Identities = 219/554 (39%), Positives = 332/554 (59%)

Query:   261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
             +S  +HF+T G++GI+R+W A S  C+Y Q         +M   ++  T  T+  +   L
Sbjct:   256 KSSGLHFLTAGDQGILRVWEAASGQCVYTQP--------QMPGLRQELTHCTLARAADLL 307

Query:   320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
             L VTAD  LLLY       +   L L K+  GY+EE+LD++FLG  + ++ VA+N   ++
Sbjct:   308 LTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVLDVRFLGPSDSHIVVASNSPCLK 360

Query:   380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 436
             V++L +++C  +L GH++IVL LD      G  L  + +KD S+R+W         CV  
Sbjct:   361 VFELQTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWKMNKAGQVACVAQ 416

Query:   437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL---SDDAEQ-PMNLKAKAVVA 491
             G+GH  +VG +  S+  ++FLV+GS D T+K+W   + L   S  A+  P+ L+A+    
Sbjct:   417 GSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRR 476

Query:   492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
              H KDINSLAV+PND L+ TGSQDRTA +W LP    +  F GH+RG+W+V+FSP DQV+
Sbjct:   477 CHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVL 536

Query:   552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG+Q++S G+DGL+KLWT+++ E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNE 596

Query:   612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
             C+ T D HEDK+W L   +  +   TGGSD+ + LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQE 656

Query:   672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 731
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLR 716

Query:   732 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791
             +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R ++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQRLSRTLQ 776

Query:   792 STFLLDYTLTGMSV 805
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q12788 TBL3 "Transducin beta-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 1028 (366.9 bits), Expect = 6.3e-155, Sum P(2) = 6.3e-155
 Identities = 220/557 (39%), Positives = 324/557 (58%)

Query:   261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
             +S  ++F+T G++G +R+W A S  C+Y Q         E+       TA  VL +    
Sbjct:   256 KSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGP-GQELTHCTLAHTAGVVLTA---- 310

Query:   320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
                TAD  LLLY       +   L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   311 ---TADHNLLLY-------EARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 436
             V++L + +C  +L GH++IVL LD      G  L  + +KD SVR+W         CV  
Sbjct:   361 VFELQTSACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSVRIWRMNKAGQVMCVAQ 416

Query:   437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
             G+GH  +VG V  S+  ++FLV+GS D T+K+W      LS +      P+ L+A+    
Sbjct:   417 GSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQR 476

Query:   492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
              H KDINS+A+APND L+ TGSQDRTA +W LP    +  F GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVL 536

Query:   552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGLVKLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNE 596

Query:   612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V+R QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQE 656

Query:   672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 731
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLR 716

Query:   732 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791
             +   WNT  + CH AQ VL  L     P E++  +G+   LE L+PYT+RHF R+ R ++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQ 776

Query:   792 STFLLDYTLTGMSVIEP 808
             +   LD+    M +  P
Sbjct:   777 AAAFLDFLWHNMKLPVP 793

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005057 "receptor signaling protein activity" evidence=TAS

GO:0007199 "G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-041114-104 tbl3 "transducin (beta)-like 3" [Danio rerio (taxid:7955)]

 Score = 1393 (495.4 bits), Expect = 8.0e-155, Sum P(2) = 8.0e-155
 Identities = 282/658 (42%), Positives = 413/658 (62%)

Query:     3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-GSD 61
             +L  K +Y     ++ FY GG + VS D   I C  G  INI+ +S   I  +IE    +
Sbjct:     5 TLLFKSNYAVSSRIEPFYKGGKVQVSGDEQHIFCTYGPKINILQISTGKIIHSIEQEDQE 64

Query:    62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATA 120
              ITA ALSPDD++L S+  +  +R WD    +C RSW+  H  P   M+   +  LLAT 
Sbjct:    65 DITAFALSPDDEMLVSASRALLLRQWDWKQQQCRRSWRAVHSVPVASMSFDCTSTLLATG 124

Query:   121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
             G D  + +WDV   +CTH  KG  GVV  + FHPD  +  LFS S D  +R+WDL + +C
Sbjct:   125 GCDGTIKLWDVIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSSDCAIRIWDLRSSRC 184

Query:   181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240
             V  L+ H+S VT++A + DG TL+S+GRDK+ ++WDL++   K T+P YE VE V  +  
Sbjct:   185 VCVLESHYSPVTALAFSPDGHTLVSSGRDKICSVWDLQEQKVKRTIPVYEAVEGVVLLS- 243

Query:   241 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 299
             GSA       Y++  +K    S  +H +T G +G++R+W++ S+ C++ Q   D +   E
Sbjct:   244 GSA------DYSEMGVK----SDALHLVTAGSKGVLRVWDSSSSRCVFTQTLPDASSHTE 293

Query:   300 MDDS----KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355
              +D+    + G     +LP    L+ VTA+  +LLY T   P     L + ++ VGYN++
Sbjct:   294 DEDAEDEERLGLLQLLLLPRTGRLITVTAEHNILLYQT---PT----LAVQQQFVGYNDD 346

Query:   356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415
             +LD+KF+G+++ ++AVATN  Q++V++LS+ SC  +L GH++ +L +D     S   +  
Sbjct:   347 VLDVKFVGKDDTHIAVATNSSQLKVFELSTNSCQ-ILHGHTDTILSIDVFRKGS---MFA 402

Query:   416 TGSKDNSVRLW--D-SESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471
             T +KD SVR+W  D S  R  CV  GTGH  AVG++A S+  Q F+VSGS D T+KVW  
Sbjct:   403 TCAKDKSVRVWRMDVSSGRVHCVAQGTGHSNAVGSIACSRMKQQFVVSGSQDCTVKVWDL 462

Query:   472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531
                +  AE  M +KA++   AH KD+NS+ V+PND L+ +GSQDRTA +W L DL  +  
Sbjct:   463 PETTG-AEGVMMMKARSTERAHEKDVNSVCVSPNDKLLASGSQDRTAKLWALSDLRLLGV 521

Query:   532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
              RGH+RG+WSV+FSPVDQ++ +AS D +++IWSI D SCLKTFEGH +SVL+  F++RG 
Sbjct:   522 CRGHRRGVWSVQFSPVDQILGSASADGSVRIWSIQDFSCLKTFEGHDASVLKIIFVSRGT 581

Query:   592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
             Q+VS G+DGLVKLWT++T EC+ T D H+DK+WAL  G + E+  TG +D+ + +W D
Sbjct:   582 QLVSSGSDGLVKLWTIKTNECVRTLDAHQDKVWALHGGCRDELMVTGSADSTITVWTD 639

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0010564 "regulation of cell cycle process" evidence=IMP

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

DICTYBASE|DDB_G0276283 utp13 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 290/863 (33%), Positives = 484/863 (56%)

Query:     3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT 62
             S  LK  +  +  +   + GG L +S D  FI    G  I I+D  + ++ S IE  SDT
Sbjct:    31 SRKLKTVFKPDYEIGSLFTGGSLRISEDSKFIVSQAGYEIKIIDTEHGTVISKIE--SDT 88

Query:    63 -ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121
              I+  ALSP+++ +     + +I+ + +     ++ WKGH+GP   +  H SG ++A+A 
Sbjct:    89 KISTFALSPNNEEILIGCSNLQIKQYRIEDQSLVKIWKGHEGPINEIDIHSSGNIVASAS 148

Query:   122 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181
             +D+ V VWD++ G+CTH F+ H  VV+ + FHP   K  L +   D  +RV+DL+ K+CV
Sbjct:   149 SDKTVKVWDLEKGYCTHNFQ-HDDVVTMLKFHPTLLK--LVTVCLDLNIRVYDLVTKECV 205

Query:   182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241
               L  H S+++ +  ++ G  LIS+GRDKV+N+WD+   + K T+P Y+ +  +  +P  
Sbjct:   206 I-LTNHLSQISGITFSNSGKELISSGRDKVLNVWDMLSKNPKKTIPIYQELGGIITLPKE 264

Query:   242 SAFDSFL--SSYNQQTIKKKRRSLEIHF----------ITVGERGIVRMWNADSA-CLYE 288
             S ++S    S    + I++K +++  H           I +G   ++R W  ++  C++ 
Sbjct:   265 S-YNSLPENSKIKIEKIREKVKTMAAHADKIKNGDDITIVIGGEEVLRAWCTETGECIWN 323

Query:   289 QKSSDVTISFEMDDSKRG---FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345
              ++ +     + DD  +    +T ++++ +   ++ +T++  LL+Y    + E++ E+I 
Sbjct:   324 DQNIEFKKKTDNDDKDKTDTLYTISSIINNKDKIISITSEHNLLIYNGKTL-ERQGEII- 381

Query:   346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405
                  GYN+EI+D+K++ ++   + VATN  +++ YDL++     VL GH ++V+ +D  
Sbjct:   382 -----GYNDEIIDIKYINDDN--IIVATNSNEIKTYDLNTKRAQ-VLRGHEDLVMSVDVS 433

Query:   406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSD 463
             A   GK  I++GS+D S  +WD E +  +   TGH G +  VA  KK     F ++ S D
Sbjct:   434 A--DGKH-IISGSRDKSAMIWDLEKKESIAQLTGHTGVISCVALPKKPSTSMFAITASDD 490

Query:   464 HTIKVW------SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517
              TIK+W      S  G  D  ++   + A     AH KDINS+++APND +  T SQD  
Sbjct:   491 RTIKLWKGFSTTSSSGGDDSKKKDKKISASVTKIAHEKDINSISIAPNDKIFATASQDSY 550

Query:   518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 577
               +W + +L  + + + H+RG+W VEFSP+DQ  +T S D TIKIWS+SD +CLKT EGH
Sbjct:   551 VKLWNVNNLEPITSIKAHRRGVWHVEFSPIDQCFLTCSADGTIKIWSLSDYTCLKTLEGH 610

Query:   578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637
               SVL+ASF++ G QIVS  ++GL+KLW ++T EC+ T++ HE KIWAL+V K  E F T
Sbjct:   611 KGSVLKASFISFGMQIVSVASEGLIKLWNIKTNECLNTFEGHESKIWALSVAKDQERFIT 670

Query:   638 GGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKL 697
             GGSD+ +  W D T              VL  Q L+ A+   DY  A+++A  L +P + 
Sbjct:   671 GGSDSKLIAWKDHTEIELEIQKKKEENQVLYKQHLDTAIRKKDYYSALKLALVLDQPRQT 730

Query:   698 FELFASVCRKREA--ELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFN 755
               +F S+    ++  E  I+  +  L   E+ + L ++R+WNT  K   ++Q VL  +  
Sbjct:   731 LNIFNSMYYDDQSIGESVIQGCIGRLSPNEVVKCLRFIRDWNTNSKFVSISQIVLNSIIT 790

Query:   756 IHPPTEI--IEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAR 813
                P E+  + +  +  +LE +IPYT RHF RID++++ T+L+D+T+  ++         
Sbjct:   791 SFKPDELSKLSVGEMPKLLESIIPYTDRHFQRIDKMLQKTYLIDFTIQSINPAASTLSMD 850

Query:   814 EVKAESLVDSNVHQDANDVVITE 836
              V+  S +D N ++ + D +I E
Sbjct:   851 RVET-SHIDQN-YKKSLDQLIKE 871

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8C4J7	TBL3_MOUSE	No assigned EC number	0.3874	0.8696	0.9575	yes	no
Q2KJJ5	TBL3_BOVIN	No assigned EC number	0.3982	0.8718	0.9612	yes	no
Q12788	TBL3_HUMAN	No assigned EC number	0.3906	0.8752	0.9554	yes	no
Q05946	UTP13_YEAST	No assigned EC number	0.3215	0.8662	0.9351	yes	no
Q9USN3	UTP13_SCHPO	No assigned EC number	0.3223	0.8594	0.9755	yes	no
Q5U2W5	TBL3_RAT	No assigned EC number	0.3923	0.8696	0.9587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	882
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-62
pfam08625	138	pfam08625, Utp13, Utp13 specific WD40 associated d	2e-53
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-41
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-30
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  212 bits (541), Expect = 2e-62
 Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 15/303 (4%)

Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404
           L + L G+   +  + F   + + LA  +    ++V+DL +      L GH+  V  +  
Sbjct: 1   LRRTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
            A  +    + +GS D ++RLWD E+  CV   TGH   V +VAFS   +  L S S D 
Sbjct: 60  SADGT---YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115

Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524
           TIKVW  +            K    +  H   +NS+A +P+ + V + SQD T  +W L 
Sbjct: 116 TIKVWDVE----------TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584
               V T  GH   + SV FSP  + ++++S D TIK+W +S G CL T  GH + V   
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644
           +F   G  + S   DG +++W +RTGEC+ T   H + + +LA     +  A+G +D  +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 645 NLW 647
            +W
Sbjct: 286 RIW 288

Length = 289

>gnl|CDD|204007 pfam08625, Utp13, Utp13 specific WD40 associated domain

 Score =  181 bits (462), Expect = 2e-53
 Identities = 56/136 (41%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 670 QELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQ--IEKALHALGKEEIR 727
           QEL N + + DY++A+ +A  L  PH+L  +  SV    ++     +E+ +  L K+++ 
Sbjct: 2   QELSNLLREGDYSEALLLALTLDHPHRLLNVLKSVIEDEDSIGSDELEETIGRLRKDQLE 61

Query: 728 QLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRID 787
           +LL+++R+WNT  + CHVAQ VL  +    PP E++E+ G+ ++LE L+PYT+RHF R+D
Sbjct: 62  RLLKFIRDWNTNARTCHVAQLVLSVILRSFPPEELLEVPGLKEILEALLPYTERHFQRLD 121

Query: 788 RLVRSTFLLDYTLTGM 803
           RLV+ ++LLDYTL  M
Sbjct: 122 RLVQESYLLDYTLQEM 137

Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end. Length = 138

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  163 bits (414), Expect = 8e-45
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 3/204 (1%)

Query: 25  LVVSSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
           +  S+DG+++A    +  I + DL       T+ G +  ++++A SPD ++L SS   + 
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 84  IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
           I+VWD+ T KCL + +GH      +A  P G  +A++  D  + +WD+  G C     GH
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
            G V+S+ F PD +K  L S S D T+++WDL   KC+ TL  H + V S+A + DG  L
Sbjct: 177 TGEVNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 204 ISAGRDKVVNLWDLRDYSCKLTVP 227
            S   D  + +WDLR   C  T+ 
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  162 bits (411), Expect = 2e-44
 Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 3/199 (1%)

Query: 28  SSDGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
           S DG  +A   G  +I + DL    +  T++G +  +  +A S D   L S    + IR+
Sbjct: 18  SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
           WDL T +C+R+  GH      +A  P G +L+++  D+ + VWDV+ G C    +GH   
Sbjct: 78  WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137

Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
           V+S+ F PD     + S S D T+++WDL   KCVATL  H   V S+A + DG  L+S+
Sbjct: 138 VNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 207 GRDKVVNLWDLRDYSCKLT 225
             D  + LWDL    C  T
Sbjct: 196 SSDGTIKLWDLSTGKCLGT 214

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  160 bits (407), Expect = 5e-44
 Identities = 88/338 (26%), Positives = 140/338 (41%), Gaps = 53/338 (15%)

Query: 94  CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH 153
             R+ KGH G    +A  P G LLAT   D  + VWD++ G      KGH G V  +   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
            D     L SGS D T+R+WDL   +CV TL  H S V+S+A + DG  L S+ RDK + 
Sbjct: 61  ADGTY--LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 214 LWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272
           +WD+    C  T+  +   V +V   P G                         F+    
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDG------------------------TFVASSS 154

Query: 273 R-GIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
           + G +++W+  +  C+             +        +    P  + LL  ++D  + L
Sbjct: 155 QDGTIKLWDLRTGKCVA-----------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCS 389
           +                 L G+   +  + F    + YL  + + +  ++V+DL +  C 
Sbjct: 204 WDL-------STGKCLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECV 254

Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
             L+GH+  V  L   A S     + +GS D ++R+WD
Sbjct: 255 QTLSGHTNSVTSL---AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  159 bits (403), Expect = 2e-43
 Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 4/193 (2%)

Query: 26  VVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
           V  S    I  +     +I + D+      +T+ G +D + ++A SPD   + SS     
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 84  IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
           I++WDL T KC+ +  GH G    +A  P G  L ++ +D  + +WD+  G C    +GH
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
           +  V+S+ F PD    LL SGS+D T+RVWDL   +CV TL  H + VTS+A + DG  L
Sbjct: 219 ENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Query: 204 ISAGRDKVVNLWD 216
            S   D  + +WD
Sbjct: 277 ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  152 bits (386), Expect = 4e-41
 Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 24/252 (9%)

Query: 53  KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
           + T++G +  +T +A SPD KLL +      I+VWDL T + LR+ KGH GP   +A   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
            G  LA+  +D+ + +WD++ G C     GH   VSS+ F P  D  +L S S D T++V
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKV 119

Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM- 231
           WD+   KC+ TL  H   V S+A + DG+ + S+ +D  + LWDLR   C  T+  +   
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 232 VEAVCAIPPG-----SAFDSFLSSYNQQTIKKKRRSLEIH---------------FITVG 271
           V +V   P G     S+ D  +  ++  T K    +L  H                 +  
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-GTLRGHENGVNSVAFSPDGYLLASGS 238

Query: 272 ERGIVRMWNADS 283
           E G +R+W+  +
Sbjct: 239 EDGTIRVWDLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  143 bits (362), Expect = 6e-38
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 40/303 (13%)

Query: 266 HFITVGERGIVRMWNADS----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321
              T    G +++W+ ++      L         ++                     L  
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA--------------SADGTYLAS 68

Query: 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381
            ++D+ + L+       +  E +  + L G+   +  + F   + + L+ ++  + ++V+
Sbjct: 69  GSSDKTIRLWDL-----ETGECV--RTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVW 120

Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
           D+ +  C   L GH++ V      A S     + + S+D +++LWD  +  CV   TGH 
Sbjct: 121 DVETGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177

Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
           G V +VAFS   +  L S SSD TIK+W               K    +  H   +NS+A
Sbjct: 178 GEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTG----------KCLGTLRGHENGVNSVA 226

Query: 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
            +P+  L+ +GS+D T  VW L     V T  GH   + S+ +SP  + + + S D TI+
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 562 IWS 564
           IW 
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  146 bits (367), Expect = 3e-37
 Identities = 106/390 (27%), Positives = 177/390 (45%), Gaps = 29/390 (7%)

Query: 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325
             ++    G +++W+ D           +  S E          A   P    +L  ++ 
Sbjct: 79  LLLSGSSDGTIKLWDLD-------NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 385
                  TV++ +      L + L G++E +  L F  + +   + ++    ++++DL +
Sbjct: 132 LD----GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 444
                 LAGH++ V  L       G +LI +GS D ++RLWD  + +      +GH  +V
Sbjct: 188 GKPLSTLAGHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504
              +FS    + L SGSSD TI++W     S              ++ H   + S+A +P
Sbjct: 246 -VSSFSP-DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAFSP 294

Query: 505 NDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIK 561
           +  L+ +GS D T  +W L    L+S +T +GH+  + S+ FSP    +V   S D TI+
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 621
           +W +  G  LKT EGH S+VL  SF   G  + S   DG V+LW + TG  +   D H  
Sbjct: 355 LWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413

Query: 622 KIWALAVGKKTEMFATGGSDALVNLWHDST 651
           ++ +L      +  A+G SD  + LW   T
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  138 bits (347), Expect = 1e-34
 Identities = 112/462 (24%), Positives = 190/462 (41%), Gaps = 55/462 (11%)

Query: 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
               LL +   D+ V + DL        L  H   +TS+A + DG  L+S   D  + LW
Sbjct: 37  ESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW 92

Query: 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275
           DL +    +                  + +    S   +          I   +    G 
Sbjct: 93  DLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135

Query: 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL-CVTADQQLLLYTTV 334
           V++W+          S+   +   ++      T+    P  + L    + D  + L+   
Sbjct: 136 VKLWD---------LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLA 393
                         L G+ + +  L F  +    +A  ++   ++++DLS+       L+
Sbjct: 187 TGKPLST-------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKK 452
           GHS+ V+     + S    L+ +GS D ++RLWD  S    +   +GH  +V +VAFS  
Sbjct: 240 GHSDSVVS----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCT 511
               L SGSSD T+++W  +           L +   +  H   ++SL+ +P+   LV  
Sbjct: 296 G-KLLASGSSDGTVRLWDLETGK--------LLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571
           GS D T  +W L     + T  GH   + SV FSP  +VV + S D T+++W +S GS L
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405

Query: 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
           +  +GHTS V    F   G  + S  +D  ++LW ++T    
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  137 bits (345), Expect = 2e-34
 Identities = 107/461 (23%), Positives = 182/461 (39%), Gaps = 49/461 (10%)

Query: 40  ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99
            S           +      S ++ +L  S    LL +      + + DLS+L      +
Sbjct: 7   TSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLR 62

Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT--HYFKGHKGVVSSILF-HPDT 156
           GH+     +A  P G LL +  +D  + +WD+D G          H   VS +    PD 
Sbjct: 63  GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122

Query: 157 DKSLLFSGSDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNL 214
           +  LL S S D TV++WDL    K + TL+ H   VTS+A + DG  L S    D  + L
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 215 WDLRDYSCKLTVPTYEMVEAVCAIPP-------GSAFDSFLSSYNQQTIKKKRRSLEIH- 266
           WDLR      T+  +    +  A  P         + D  +  ++  T K  R +L  H 
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Query: 267 -------------FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313
                          +    G +R+W+           S  ++   +        +    
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLR---------SSSSLLRTLSGHSSSVLSVAFS 293

Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
           P  + L   ++D  + L+       +  +L+ S  L G+   +  L F  +    ++  +
Sbjct: 294 PDGKLLASGSSDGTVRLWDL-----ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
           +   ++++DL +      L GHS +     + + S    ++ +GS D +VRLWD  +   
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNV----LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
           +    GH   V ++ FS      L SGSSD+TI++W     
Sbjct: 405 LRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  136 bits (343), Expect = 4e-34
 Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 21/336 (6%)

Query: 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384
           +  +LL   +      +  + S  L G+ + I  + F   + + L   ++   ++++DL 
Sbjct: 37  ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFS-PDGELLLSGSSDGTIKLWDLD 95

Query: 385 SMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHM 441
           +       +   H   V  L   +     IL+ + S D +V+LWD  +    +    GH 
Sbjct: 96  NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155

Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
            +V ++AFS   +      S D TIK+W               K  + +A H   ++SLA
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLR----------TGKPLSTLAGHTDPVSSLA 205

Query: 502 VAPNDS-LVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
            +P+   L+ +GS D T  +W L    +   T  GH   + S  FSP   ++ + S D T
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGT 264

Query: 560 IKIWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TY 616
           I++W + S  S L+T  GH+SSVL  +F   G  + S  +DG V+LW + TG+ ++  T 
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 617 DKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDST 651
             HE  + +L+      +  +GGS D  + LW   T
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (313), Expect = 3e-30
 Identities = 101/446 (22%), Positives = 180/446 (40%), Gaps = 67/446 (15%)

Query: 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLD-KHFSRVTSMAIT 197
            +GH+  ++SI F PD    LL SGS D T+++WDL   +K + +L+  H S V+ +A++
Sbjct: 61  LRGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 198 S-DGSTLISAG--RDKVVNLWDLRDYSCKLTV--PTYEMVEAVCAIPPGSAFDSFLSSYN 252
           S DG++++ A    D  V LWDL      +       E V ++   P             
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP------------- 165

Query: 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312
                      ++        G +++W+  +                +       ++   
Sbjct: 166 ---------DGKLLASGSSLDGTIKLWDLRTGKPLST----------LAGHTDPVSSLAF 206

Query: 313 LPSNQG-LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371
            P     +   ++D  + L+        +  L               +     +   LA 
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--------SGHSDSVVSSFSPDGSLLAS 258

Query: 372 ATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430
            ++   ++++DL SS S    L+GHS  VL +   A S    L+ +GS D +VRLWD E+
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AFSPDGKLLASGSSDGTVRLWDLET 315

Query: 431 RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
              +   T  GH G V +++FS      +  GS D TI++W                   
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE------- 368

Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
                  ++ S++ +P+  +V +GS D T  +W L     +    GH   + S++FSP  
Sbjct: 369 ----GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 549 QVVITASGDKTIKIWSISDGSCLKTF 574
           + + + S D TI++W +       +F
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 6e-30
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 25  LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
           +  S DG+F+A +  + +I + DL      +T+ G +  + ++A SPD + L SS     
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200

Query: 84  IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
           I++WDLST KCL + +GH+     +A  P G LLA+   D  + VWD+  G C     GH
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260

Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
              V+S+ + PD     L SGS D T+R+WD
Sbjct: 261 TNSVTSLAWSPDG--KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  124 bits (310), Expect = 8e-30
 Identities = 100/415 (24%), Positives = 165/415 (39%), Gaps = 51/415 (12%)

Query: 25  LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALAL---SPDDKLLFS--S 78
           +  S DG  +     + +I + DL N         G    +   L   SPD   +    S
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 79  GHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFC 136
                +++WDLST  K +R+ +GH      +A  P G LLA+    D  + +WD+  G  
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
                GH   VSS+ F PD    L+ SGS D T+R+WDL   K + +     S     + 
Sbjct: 191 LSTLAGHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256
           + DGS L S   D  + LWDLR  S  L   +     +V ++       +F         
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSV-------AFSPDGKL--- 298

Query: 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316
                       +    G VR+W+ ++  L    +        +   +   ++ +  P  
Sbjct: 299 ----------LASGSSDGTVRLWDLETGKLLSSLT--------LKGHEGPVSSLSFSPDG 340

Query: 317 QGLL-CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375
             L+   + D  + L+        K     S         +L + F   + + ++  +  
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--------NVLSVSFS-PDGRVVSSGSTD 391

Query: 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430
             V+++DLS+ S    L GH+  V  LD    S     + +GS DN++RLWD ++
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLD---FSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 100 GHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSIL 151
           G +GP I +A +P     L TA  D  ++ W +     T        + +GH   V  + 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211
           FHP    ++L S   D  V VWD+   K V  +  H  ++TS+    DGS L +  +DK 
Sbjct: 133 FHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191

Query: 212 VNLWDLRD 219
           +N+ D RD
Sbjct: 192 LNIIDPRD 199

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
           G      KGH G V+S+ F PD   +LL SGSDD TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 91  TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
           + + L++ KGH GP   +A  P G  LA+   D  + +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
           + T +GH   + SV FSP   ++ + S D T+++W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
                KGH G V+S+ F PD     L SGSDD T+++WD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
           + T +GH   + SV FSP  + + + S D TIK+W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 93  KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
           K LR+ KGH GP   +A  P G LLA+   D  V VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
            G  LKT +GHT  V   +F   G  + S   DG +KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
            K + TL  H   VTS+A + DG+ L S   D  V +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
           G  L+T +GHT  V   +F   G  + S   DG V++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
            + + TL  H   VTS+A + DG  L S   D  + LWD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
              +    GH G V +VAFS    N L SGS D T++VW 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 534 GHKRGIWSVEFSPVD-QVVITASGDKTIKIWSI-SDG------SCLKTFEGHTSSVLRAS 585
           G +  I  V F+P D Q + TAS D TI  W I  +G        +   +GHT  V   S
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 586 FLTRGAQIV-SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644
           F      ++ S GAD +V +W V  G+ +     H D+I +L       +  T   D  +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 645 NL 646
           N+
Sbjct: 193 NI 194

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           S   +    GH G V +VAFS     +L SGS D TIK+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88
           +  T++G +  +T++A SPD  LL S      +RVWD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.2 bits (109), Expect = 7e-05
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 77  SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM---ACHPSGGLLATAGADRKVLVWDVDG 133
           SS     ++VWD++  + +   K H+     +   +  P+  LLA+   D  V +W ++ 
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQ 607

Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVT 192
           G      K  K  +  + F  ++ +SL F GS D  V  +DL   K  + T+  H S+  
Sbjct: 608 GVSIGTIKT-KANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLCTMIGH-SKTV 664

Query: 193 SMAITSDGSTLISAGRDKVVNLWDL 217
           S     D STL+S+  D  + LWDL
Sbjct: 665 SYVRFVDSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
                 L GH+  V      A S    L+ +GS D +VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTS---VAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
           S      L GH+  V      A S     + +GS D +++LWD
Sbjct: 1   SGELLKTLKGHTGPVTS---VAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88
           T++G +  +T++A SPD K L S      I++WD
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
           K    +  H   + S+A +P+ +L+ +GS D T  VW
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
           +GE + T   H   + ++A     +  A+G  D  + LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
           + +    +  H   + S+A +P+   + +GS D T  +W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 29  SDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
           S    +  +     ++ + DLS  S+   ++G +  +T+L  SPD K L S      IR+
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Query: 87  WDLSTLKCLRSW 98
           WDL T     S+
Sbjct: 439 WDLKTSLKSVSF 450

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 60  SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA--------CH 111
           S+ + A+    D +   ++G +++I++++  ++  ++  +    P + +A        C 
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESI--IKDGRDIHYPVVELASRSKLSGICW 540

Query: 112 PS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169
            S     +A++  +  V VWDV         K H+  V SI +    D +LL SGSDD +
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY-SSADPTLLASGSDDGS 599

Query: 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRD 219
           V++W +     + T+ K  + +  +   S+ G +L     D  V  +DLR+
Sbjct: 600 VKLWSINQGVSIGTI-KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498
           GH   VG V+F     N L S  +D  + VW       D E+    KA  V+  H   I 
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVW-------DVERG---KAVEVIKCHSDQIT 172

Query: 499 SLAVAPNDSLVCTGSQDRTACVW--RLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVIT 553
           SL    + SL+CT S+D+   +   R   +VS V        +R +W+     +  +  +
Sbjct: 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232

Query: 554 ASGDKTIKIWSISD 567
            S  + I +W    
Sbjct: 233 KSQQRQIMLWDTRK 246

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
           G+ + T   H   + ++A      + A+G  D  V +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
           LA  S++      C  S  K  + + + +  V++WD      V     H   V ++ +S 
Sbjct: 529 LASRSKLS---GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585

Query: 452 KLQNFLVSGSSDHTIKVWSFD-GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--L 508
                L SGS D ++K+WS + G+S        +K KA +             P++S   
Sbjct: 586 ADPTLLASGSDDGSVKLWSINQGVSIG-----TIKTKANICC--------VQFPSESGRS 632

Query: 509 VCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSIS 566
           +  GS D     + L +  + + T  GH + +  V F  VD   ++++S D T+K+W +S
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDLS 690

Query: 567 ------DGSCLKTFEGHTS 579
                 + + L +F GHT+
Sbjct: 691 MSISGINETPLHSFMGHTN 709

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	882
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1963	792	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
PTZ00421	493	coronin; Provisional	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.79
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG1334	559	consensus WD40 repeat protein [General function pr	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG2315	566	consensus Predicted translation initiation factor	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.64
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
COG4946	668	Uncharacterized protein related to the periplasmic	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
KOG2321	703	consensus WD40 repeat protein [General function pr	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG2315	566	consensus Predicted translation initiation factor	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG2314	698	consensus Translation initiation factor 3, subunit	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.36
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.27
PRK01029	428	tolB translocation protein TolB; Provisional	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.25
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.03
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.96
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.94
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.92
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	98.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	98.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
KOG2695	425	consensus WD40 repeat protein [General function pr	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.7
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.68
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.65
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.65
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.61
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.56
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.49
PRK02888	635	nitrous-oxide reductase; Validated	98.47
KOG3621	726	consensus WD40 repeat-containing protein [General	98.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.41
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.33
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.21
PRK02888	635	nitrous-oxide reductase; Validated	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
KOG3621	726	consensus WD40 repeat-containing protein [General	98.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.11
COG3391	381	Uncharacterized conserved protein [Function unknow	98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.91
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.86
COG3391	381	Uncharacterized conserved protein [Function unknow	97.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.85
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.73
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	97.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.71
PRK13616	591	lipoprotein LpqB; Provisional	97.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.68
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.61
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.6
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.45
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.43
PRK13616	591	lipoprotein LpqB; Provisional	97.38
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.35
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.35
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.14
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.08
KOG2395	644	consensus Protein involved in vacuole import and d	97.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.03
PRK10115	686	protease 2; Provisional	97.01
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.96
KOG2395	644	consensus Protein involved in vacuole import and d	96.85
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.84
KOG2444	238	consensus WD40 repeat protein [General function pr	96.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.79
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.76
KOG2444	238	consensus WD40 repeat protein [General function pr	96.72
PHA02713	557	hypothetical protein; Provisional	96.72
PHA02713	557	hypothetical protein; Provisional	96.72
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.48
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.26
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.18
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.12
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	96.06
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.95
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.88
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.82
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.75
PRK13684	334	Ycf48-like protein; Provisional	95.7
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	95.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.38
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.34
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.08
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.03
PHA03098	534	kelch-like protein; Provisional	95.0
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.99
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.93
PHA03098	534	kelch-like protein; Provisional	94.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.58
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.2
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.72
COG5276	370	Uncharacterized conserved protein [Function unknow	93.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.66
COG3292	671	Predicted periplasmic ligand-binding sensor domain	93.64
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.6
PHA02790	480	Kelch-like protein; Provisional	93.52
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.49
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.31
PRK10115	686	protease 2; Provisional	93.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.07
PHA02790	480	Kelch-like protein; Provisional	93.06
PRK13684	334	Ycf48-like protein; Provisional	92.92
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.79
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.64
KOG2247	615	consensus WD40 repeat-containing protein [General	92.59
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.56
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.17
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.12
COG1770	682	PtrB Protease II [Amino acid transport and metabol	92.08
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.97
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.7
COG4590	733	ABC-type uncharacterized transport system, permeas	91.41
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.39
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.96
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.92
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.62
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.62
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.39
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.28
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.26
COG5167	776	VID27 Protein involved in vacuole import and degra	89.78
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.77
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.26
KOG2247	615	consensus WD40 repeat-containing protein [General	89.0
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.84
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.68
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.61
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.61
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.32
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.32
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.49
PF04699	152	P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc);	87.37
COG4590	733	ABC-type uncharacterized transport system, permeas	87.0
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.7
COG5167	776	VID27 Protein involved in vacuole import and degra	86.47
KOG3380	152	consensus Actin-related protein Arp2/3 complex, su	86.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.47
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	84.26
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	84.16
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.16
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.99
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.98
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	83.4
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.3
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.17
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.14
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.45
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.4
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	82.08
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.88
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.7

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-122  Score=942.21  Aligned_cols=765  Identities=47%  Similarity=0.790  Sum_probs=713.1

Q ss_pred             CCCCcccccccccccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCce-eeeec-CCCccEEEEEEcCCCCEEEEE
Q 002782            1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASI-KSTIE-GGSDTITALALSPDDKLLFSS   78 (882)
Q Consensus         1 m~~~~l~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~-~~~l~-~~~~~I~~l~~spd~~~las~   78 (882)
                      |++..+|++|+..++++|||+||.++||++|+.|++.+++.|.+.|+.+++. +.... ...+.|++++++||+++|+++
T Consensus         1 ma~~~~Kk~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a   80 (775)
T KOG0319|consen    1 MAPMTEKKSYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA   80 (775)
T ss_pred             CCccchhhhhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe
Confidence            8999999999999999999999999999999999999999999999999987 44333 356789999999999999999


Q ss_pred             eCCCcEEEEECCCCeeEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC
Q 002782           79 GHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD  157 (882)
Q Consensus        79 ~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~  157 (882)
                      ++.+.+++|++++++.++.+++ |.+||.-|+|+|.|.+|++|+.|+.++|||+..+.+++.|+||.+.|.++.|+|+..
T Consensus        81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEeCCCcEEEEECCCCe-EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782          158 KSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC  236 (882)
Q Consensus       158 ~~~l~sgs~dg~I~vwd~~~~~-~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  236 (882)
                      +.+|++|..|+.+++||+.++. |+.++..|.+.|+++.|++|+..++++|+|..+.+||+.+.+..+++|.++.++++.
T Consensus       161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv  240 (775)
T KOG0319|consen  161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV  240 (775)
T ss_pred             hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence            9999999999999999999554 588899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce-eeeecCCceeeeeccCCcCcceeEEEEccC
Q 002782          237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPS  315 (882)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (882)
                      +.+++..                  ....++++.|.+|.++.|+..++. ...+..++          ...+..+...+.
T Consensus       241 ~l~~~~~------------------~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~----------~~e~~~~~~~~~  292 (775)
T KOG0319|consen  241 RLREELG------------------GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD----------SEEIDHLLAIES  292 (775)
T ss_pred             EechhcC------------------CcceEEEEecCCceEEEEecccchhhhhhccCC----------chhhhcceeccc
Confidence            9877321                  113589999999999999999983 33333332          123778888899


Q ss_pred             CCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC
Q 002782          316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH  395 (882)
Q Consensus       316 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  395 (882)
                      ...++++++++++.+|+..       ++...+.+.|++++|.+++|.+++.++++++++.+.+++|+..+..+. .+.||
T Consensus       293 ~~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH  364 (775)
T KOG0319|consen  293 MSQLLLVTAEQNLFLYDED-------ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGH  364 (775)
T ss_pred             cCceEEEEccceEEEEEcc-------ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCc
Confidence            9999999999999999766       678889999999999999999999999999999999999999998888 89999


Q ss_pred             CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782          396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      ++.|.+++  .+..|. ++++|++|.++++|.++++    .++....+|.+.|.+++++..+..+|+++|.|+++++|++
T Consensus       365 ~e~vlSL~--~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  365 TEAVLSLD--VWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             hhheeeee--ecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            99999998  667774 4999999999999977543    3556678999999999999998899999999999999999


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEE
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  551 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  551 (882)
                      ....+. ..+.......+...|.++|+|++++|+.+++||||+|++.+||+++++....++.||..+|+++.|+|.++.+
T Consensus       442 ~~s~~~-~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~l  520 (775)
T KOG0319|consen  442 PKSKET-AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLL  520 (775)
T ss_pred             CCcccc-cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccccee
Confidence            874332 2355666777889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782          552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       552 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                      +|+|.|++|+||.+.++.|+++|+||...|..+.|..+|.+|+|++.||.|++|++++++|+.+++.|+++||+++.+|.
T Consensus       521 aT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~  600 (775)
T KOG0319|consen  521 ATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL  600 (775)
T ss_pred             EeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhH
Q 002782          632 TEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAE  711 (882)
Q Consensus       632 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  711 (882)
                      +.+++||+.||.|.+|.+.|+++++++.+++++.++++|+++|++.+.+|.+|+.+|+.+.+|+.++.++..++++++ +
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~-~  679 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD-P  679 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998887766 6


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHh
Q 002782          712 LQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR  791 (882)
Q Consensus       712 ~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~  791 (882)
                      .+|.+++..|+.++.+.||+|+++||||+|+|+++|++|+.+|+.+.|+++.+.|+..+++++|+||+||||+||+|+.|
T Consensus       680 e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~~  759 (775)
T KOG0319|consen  680 EELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLVQ  759 (775)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhheeccccCCC
Q 002782          792 STFLLDYTLTGMSVI  806 (882)
Q Consensus       792 ~~~~~~~~~~~~~~~  806 (882)
                      .+++|||+|.+|+.+
T Consensus       760 ~~~lLdf~~~eM~~~  774 (775)
T KOG0319|consen  760 DSALLDFTWFEMRIS  774 (775)
T ss_pred             hhHHHHHhhhheecC
Confidence            999999999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-79  Score=625.57  Aligned_cols=766  Identities=22%  Similarity=0.370  Sum_probs=588.5

Q ss_pred             cccccccccccccCC-ceE----EccCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCccEEEEEEcCCCCEEEEEeCC
Q 002782            9 SYGCEPVLQQFYGGG-PLV----VSSDGSFIACACGESINIVDLSNASIKSTIE--GGSDTITALALSPDDKLLFSSGHS   81 (882)
Q Consensus         9 ~~~~~~~~~~~y~g~-~va----~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~--~~~~~I~~l~~spd~~~las~~~d   81 (882)
                      .|++...+..+-+++ ++.    =+..|+++|+.....|.+||+++|+....+.  .....|+|++-+||.-+||+|+.|
T Consensus         7 rye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD   86 (888)
T KOG0306|consen    7 RYEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD   86 (888)
T ss_pred             cccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC
Confidence            355666665555532 111    1235999999999999999999996655443  334589999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEE
Q 002782           82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL  161 (882)
Q Consensus        82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l  161 (882)
                      |.|+||+..++....++.||+..|+++.|+..|.+||+||.|+.|.|||+-...-..+++||...|+..-|..+.  .++
T Consensus        87 GsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~l  164 (888)
T KOG0306|consen   87 GSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFL  164 (888)
T ss_pred             ceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEE
Confidence            999999999999999999999999999999999999999999999999999888899999999999999998743  469


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCC
Q 002782          162 FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG  241 (882)
Q Consensus       162 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  241 (882)
                      ++.+.|+.|++||+.+..|..+...|.+.++++++.+  +.+++++.|+.+++|++.....-..-+     ..+.+..  
T Consensus       165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~-----~~~s~~~--  235 (888)
T KOG0306|consen  165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN-----RYISTKL--  235 (888)
T ss_pred             EEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc-----ccceeec--
Confidence            9999999999999999999999999999999999987  789999999999999983211100000     0000000  


Q ss_pred             CCcccccccchhhh----hhccccccceEEEEEcCCCeEEEEECCCce-ee---ee-----c-CCc-------eeee---
Q 002782          242 SAFDSFLSSYNQQT----IKKKRRSLEIHFITVGERGIVRMWNADSAC-LY---EQ-----K-SSD-------VTIS---  297 (882)
Q Consensus       242 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~-~~---~~-----~-~~~-------~~~~---  297 (882)
                            .+.+.++.    ...........+++.|.|..+.++.+.+.. +.   ..     + ...       ...+   
T Consensus       236 ------~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~  309 (888)
T KOG0306|consen  236 ------RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD  309 (888)
T ss_pred             ------cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence                  01111111    111122234578889999999999987761 11   00     0 000       0000   


Q ss_pred             ----eccCCcCcceeEEEEccCCCc--EEEEEeCCeEEEEEecccc--cccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782          298 ----FEMDDSKRGFTAATVLPSNQG--LLCVTADQQLLLYTTVEVP--EKKMELILSKRLVGYNEEILDLKFLGEEEQYL  369 (882)
Q Consensus       298 ----~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  369 (882)
                          ...-.....+....+.|.+..  .++...++.+..|.+....  .+...........||...|..++++. + +.+
T Consensus       310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d-~~~  387 (888)
T KOG0306|consen  310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-D-SIL  387 (888)
T ss_pred             HHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-C-cee
Confidence                000112234555666665443  3555888999999887622  12333444567889999999999985 3 344


Q ss_pred             EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEE
Q 002782          370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF  449 (882)
Q Consensus       370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~  449 (882)
                      ...+..+.+.+|+..+.+|++++...  .+.+..  |.|.+++ +++|.+.|.+.+||+.+...+....+|.+.|++++.
T Consensus       388 ~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~--Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~  462 (888)
T KOG0306|consen  388 LASGAGESIKIWNRDTLKCIRTITCG--YILASK--FVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL  462 (888)
T ss_pred             eeecCCCcEEEEEccCcceeEEeccc--cEEEEE--ecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence            44444589999999999999999865  555555  7788887 999999999999999999999999999999999999


Q ss_pred             ccCCCcEEEEeeCCCeEEEEecCCCCCCCC---CcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782          450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  526 (882)
Q Consensus       450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~  526 (882)
                      +|++. .+++||.|.+|++||+.-....+.   ...++....+ ......|.|+.+||||++||++-.|.+++||-+++.
T Consensus       463 ~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  463 SPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL  540 (888)
T ss_pred             cCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce
Confidence            99987 689999999999999864422111   0111111122 234578999999999999999999999999999999


Q ss_pred             eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782          527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       527 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      +...++.||.-||.|+..|||+++++|||.|.+|++|-++-|.|.++|.+|..+|+++.|.|....++++|.||.|+-||
T Consensus       541 KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH----HHHhhhhHHHHh-c-------------
Q 002782          607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER----EEAFRKEEEAVL-R-------------  668 (882)
Q Consensus       607 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~-~-------------  668 (882)
                      -...++++.+.+|...|||++.+|+|.++++++.|.+|++|....+...    ++.+++++.+.+ .             
T Consensus       621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g  700 (888)
T KOG0306|consen  621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADG  700 (888)
T ss_pred             hhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccc
Confidence            9999999999999999999999999999999999999999998874321    111111111100 0             


Q ss_pred             ------cchHHHhhhccchHHHHHHHhh---------cCCch-hHHHHH--------HHHHhcchhHHHHHHHHhccCHH
Q 002782          669 ------GQELENAVLDADYTKAIQVAFE---------LRRPH-KLFELF--------ASVCRKREAELQIEKALHALGKE  724 (882)
Q Consensus       669 ------~~~~~~~~~~~~~~~a~~~a~~---------~~~~~-~~~~~~--------~~~~~~~~~~~~l~~~~~~l~~~  724 (882)
                            .+.++.....++..+|+.++.+         +..|+ .++..+        ... ...+...+|+.+|.-||++
T Consensus       701 ~~~~~skkTieSvk~aE~i~ea~di~~~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dt-l~~Ir~S~Ld~aLlllPfS  779 (888)
T KOG0306|consen  701 DAGVASKKTIESVKSAERILEALDIGREELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDT-LMKIRASELDDALLLLPFS  779 (888)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHH-HHhcchhhhhhhheeccHH
Confidence                  0222233333333344432221         11132 111111        111 1123456899999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccC
Q 002782          725 EIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS  804 (882)
Q Consensus       725 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  804 (882)
                      ++..+|+++..|+.++...+++.+++.+|+++|. .++...+++++.|+.+...+++..+      |....++||+++++
T Consensus       780 ~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~-~~it~~~~~kp~l~~i~s~l~~~v~------q~rdv~G~NlagL~  852 (888)
T KOG0306|consen  780 YVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHH-KQITAHKNMKPLLEKIKSKLREIVE------QLRDVLGFNLAGLS  852 (888)
T ss_pred             HHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhh-hhhccccchHHHHHHHHHHHHHHHH------HhhhhhhhhhhHHH
Confidence            9999999999999999999999999999999998 8999999999999999998886555      45555599999999


Q ss_pred             CCCC
Q 002782          805 VIEP  808 (882)
Q Consensus       805 ~~~~  808 (882)
                      ++..
T Consensus       853 ~l~~  856 (888)
T KOG0306|consen  853 LLKQ  856 (888)
T ss_pred             HHHH
Confidence            9874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-72  Score=573.18  Aligned_cols=738  Identities=21%  Similarity=0.327  Sum_probs=594.3

Q ss_pred             cccccccccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782            7 KKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV   86 (882)
Q Consensus         7 ~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~i   86 (882)
                      |..|+.++.+...|.+|.++|++||.-++.+.++.|.++|+.+++-....-.+...|+++++||+|.+|++....|...+
T Consensus         2 k~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~l   81 (893)
T KOG0291|consen    2 KTEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALL   81 (893)
T ss_pred             ccccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEE
Confidence            67899999999999999999999999999999999999999988765444456789999999999999999999999999


Q ss_pred             EECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEeecCCCcEEEEEEecCCCc
Q 002782           87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILFHPDTDK  158 (882)
Q Consensus        87 wd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~f~~~~~~  158 (882)
                      -++.....++.++ -+.+|.++.|||+|+++|.|.. +.+.||......        ...++.+|...|+++.|+.|.+.
T Consensus        82 vs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~  159 (893)
T KOG0291|consen   82 VSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRL  159 (893)
T ss_pred             EecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCce
Confidence            9999888888877 4689999999999999998764 789999875432        23456789999999999998654


Q ss_pred             cEEEEEeCCCcEEEEECCCCeE--EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce--eeeeecCcceeeE
Q 002782          159 SLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPTYEMVEA  234 (882)
Q Consensus       159 ~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~  234 (882)
                        |++|+.|..+++|++...+.  ...+.+|.+.|.+.-|..+...+++.+.||.+.+|.....-  ....-...+....
T Consensus       160 --l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d  237 (893)
T KOG0291|consen  160 --LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD  237 (893)
T ss_pred             --EEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence              99999999999999987665  66789999999999999999999999999999999876431  1000000000000


Q ss_pred             EEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCe-EEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc
Q 002782          235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL  313 (882)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (882)
                      .                              ....-++... -.+|...             ...-.......+++..++
T Consensus       238 ~------------------------------~~~~~~Eek~~~~~~~k~-------------~k~~ln~~~~kvtaa~fH  274 (893)
T KOG0291|consen  238 E------------------------------EMDEDGEEKTHKIFWYKT-------------KKHYLNQNSSKVTAAAFH  274 (893)
T ss_pred             c------------------------------cccccchhhhcceEEEEE-------------Eeeeecccccceeeeecc
Confidence            0                              0000000000 0011100             011111222567888899


Q ss_pred             cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc-CCcEEEEeCCCceeeeee
Q 002782          314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVL  392 (882)
Q Consensus       314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~  392 (882)
                      +....++++-..|.+.+|.++       .+.....+.-....|..+.|+. .+.++|.|+. -|++.+|+..+...+...
T Consensus       275 ~~t~~lvvgFssG~f~LyelP-------~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQ  346 (893)
T KOG0291|consen  275 KGTNLLVVGFSSGEFGLYELP-------DFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQ  346 (893)
T ss_pred             CCceEEEEEecCCeeEEEecC-------CceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeec
Confidence            999999999999999999988       5566667777778899999876 6778888766 489999999999999999


Q ss_pred             eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782          393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  472 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~  472 (882)
                      ++|...+.+++  ++|||.. +++|+.||.|++||..++-|..++..|++.|+.+.|+..++ .+++.+-||+|+.||+.
T Consensus       347 QgH~~~i~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  347 QGHSDRITSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             cccccceeeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeec
Confidence            99999999999  9999998 99999999999999999999999999999999999999977 89999999999999997


Q ss_pred             CCCCCCCCcccccchhhh-hhcCCCeeEEEEcCCCcEEEEEcCCC-cEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782          473 GLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~la~~s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                      ....          ..++ ........|++..|.|.+++.|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|++..
T Consensus       423 RYrN----------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  423 RYRN----------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             ccce----------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence            5421          1111 12233567999999999999999887 5999999999999999999999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc-----------
Q 002782          551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-----------  618 (882)
Q Consensus       551 l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------  618 (882)
                      |+++|.|.+||+||+-.. ..+.+++ +...++.++|.|+|+.|+++..||.|.+||++.+..+.++++           
T Consensus       493 LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~  571 (893)
T KOG0291|consen  493 LASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKET  571 (893)
T ss_pred             EEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccc
Confidence            999999999999998655 3445554 778899999999999999999999999999988776655442           


Q ss_pred             ---------CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHHHh----------------hh-----------h
Q 002782          619 ---------HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF----------------RK-----------E  662 (882)
Q Consensus       619 ---------h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------------~~-----------~  662 (882)
                               .....+.+++|+||.+|++||....|++|++.++...+..+                ++           .
T Consensus       572 D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~  651 (893)
T KOG0291|consen  572 DRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDT  651 (893)
T ss_pred             ceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccc
Confidence                     12467889999999999999999999999988764322100                00           0


Q ss_pred             HHHHh-------------------------------------------------------------------ccchHHHh
Q 002782          663 EEAVL-------------------------------------------------------------------RGQELENA  675 (882)
Q Consensus       663 ~~~~~-------------------------------------------------------------------~~~~~~~~  675 (882)
                      ++..+                                                                   ....+..+
T Consensus       652 e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~LD~~vTPe~v~~a  731 (893)
T KOG0291|consen  652 EESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDLDVDVTPESVREA  731 (893)
T ss_pred             ccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcccccccccCHHHHHHH
Confidence            00000                                                                   00113367


Q ss_pred             hhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhc
Q 002782          676 VLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFN  755 (882)
Q Consensus       676 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  755 (882)
                      +.+.+|.+|+.++++++++..+.+++++++..     .++.+...||..++++||++|.+...+++|.+++..|++.||.
T Consensus       732 l~~qey~~AlvmslRLNe~~lI~evlesvp~~-----~Ie~V~~~Lp~~y~erll~~l~~~l~~s~HieF~l~W~~~il~  806 (893)
T KOG0291|consen  732 LREQEYLKALVMSLRLNEYKLIKEVLESVPIK-----DIELVASSLPTAYLERLLKALSRFLENSPHIEFYLRWLRAILT  806 (893)
T ss_pred             HhcchHHHHHHHHHhcCHHHHHHHHHHhCChh-----hhhhhhhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            78889999999999999998887888777665     7999999999999999999999999999999999999999999


Q ss_pred             cCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccCCCCCchhhhhhhhhccccccccc
Q 002782          756 IHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQ  827 (882)
Q Consensus       756 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (882)
                      .||........-+.+.|.+|++.+.||.++|.+|+      .+|-++|+++....+++  |.+-.+..++++
T Consensus       807 ~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~------~~Nky~L~~lv~~~~~~--k~~~~~~~~eed  870 (893)
T KOG0291|consen  807 YHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLC------SLNKYTLRYLVSKRQSR--KSAKKPEEEEED  870 (893)
T ss_pred             HhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHhhhhhh--cccCCccccccc
Confidence            99954444445577889999999999999999999      88888888876544444  555444444444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-58  Score=474.83  Aligned_cols=527  Identities=24%  Similarity=0.414  Sum_probs=449.4

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecC-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH  101 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~-~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h  101 (882)
                      +++++||+++|+++..+ -+++|++++|+.++.++. |+.||.-++|+|.|..||+|+.||.++|||+..+.+.+.|+||
T Consensus        67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~  146 (775)
T KOG0319|consen   67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH  146 (775)
T ss_pred             eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC
Confidence            79999999999999987 799999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCE--EEEEeCCCcEEEEECCCCe-EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC
Q 002782          102 DGPAIGMACHPSGGL--LATAGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK  178 (882)
Q Consensus       102 ~~~V~~l~fs~~~~~--lasg~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~  178 (882)
                      .+.|.++.|+|+-.+  |++|+.|+++++||+.+.. +++.+..|.+.|++++|++|+..  +++++.|..+.+||+.+.
T Consensus       147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~--~ls~~RDkvi~vwd~~~~  224 (775)
T KOG0319|consen  147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE--LLSVGRDKVIIVWDLVQY  224 (775)
T ss_pred             CceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce--EEEeccCcEEEEeehhhh
Confidence            999999999997664  8999999999999998554 58888999999999999999766  999999999999999888


Q ss_pred             eEEEEecCcccceEEEEEccC-----CCEEEEEeCCCeEEEEecCCceeeeeecCcc--eeeEEEecCCCCCcccccccc
Q 002782          179 KCVATLDKHFSRVTSMAITSD-----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSY  251 (882)
Q Consensus       179 ~~~~~l~~h~~~v~~l~~s~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  251 (882)
                      ++..+++.. ..+.++.+-++     |.+++++|.+|.+++||..+.++........  .+......+            
T Consensus       225 ~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~------------  291 (775)
T KOG0319|consen  225 KKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIE------------  291 (775)
T ss_pred             hhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceecc------------
Confidence            777776533 45667777776     6799999999999999999887765443332  111111111            


Q ss_pred             hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEE-ccCCCcEEEEEeCCeEEE
Q 002782          252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV-LPSNQGLLCVTADQQLLL  330 (882)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~  330 (882)
                                 ....+++...+..+.++|.++..+..+.          ......+..+.+ .|+.+.+++.++.+.+++
T Consensus       292 -----------~~~~~l~vtaeQnl~l~d~~~l~i~k~i----------vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  292 -----------SMSQLLLVTAEQNLFLYDEDELTIVKQI----------VGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             -----------ccCceEEEEccceEEEEEccccEEehhh----------cCCchhheeeeecCCccceEEEEeCCCceEE
Confidence                       1236778888889999988877554332          222345555554 467788899999999999


Q ss_pred             EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc----eeeeeeeCCCcceEEeeeee
Q 002782          331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCA  406 (882)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~  406 (882)
                      |+..+..        ...+.||.+.|.++.... .+.++++++.|..+++|.++.+    .++....+|+..|.+++  .
T Consensus       351 y~~~~~~--------c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava--~  419 (775)
T KOG0319|consen  351 YTLPTSY--------CQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA--G  419 (775)
T ss_pred             EecCCCc--------eEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee--e
Confidence            9776432        227889999999999433 5589999999999999977443    34556779999999998  6


Q ss_pred             ecCCCEEEEEeecCCeEEEEeCCCceEE---------eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCC
Q 002782          407 LSSGKILIVTGSKDNSVRLWDSESRCCV---------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD  477 (882)
Q Consensus       407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~  477 (882)
                      +..+..++++++.|+++++|++...+..         .....|...|++++++|+.. ++++||.|++.++|+++..   
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~---  495 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQL---  495 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCc---
Confidence            7777788999999999999998762211         12347999999999999976 9999999999999999844   


Q ss_pred             CCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782          478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  557 (882)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  557 (882)
                             ....++.+|...|.|+.|+|+.+.+||+|.|++|+||.+.++.++.+|.||...|..+.|-.+|..|++++.|
T Consensus       496 -------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad  568 (775)
T KOG0319|consen  496 -------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD  568 (775)
T ss_pred             -------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence                   2677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      |-|++|++++++|+.++.+|.+.|++++-++.+.+++||+.||.|.+|.-.
T Consensus       569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            999999999999999999999999999999999999999999999999643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-54  Score=428.30  Aligned_cols=585  Identities=18%  Similarity=0.245  Sum_probs=476.3

Q ss_pred             CCCCcccccccccccccccccCCceEE--ccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE
Q 002782            1 MASLPLKKSYGCEPVLQQFYGGGPLVV--SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS   78 (882)
Q Consensus         1 m~~~~l~~~~~~~~~~~~~y~g~~va~--s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~   78 (882)
                      |.++.||+.|++.|+-++-.+   +.+  .|-|..++++++..|.+.+++++.....+..|..+++-..|||.|-|+|+|
T Consensus         1 ms~~~lk~~~~~lPst~Rg~~---~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASG   77 (603)
T KOG0318|consen    1 MSEYELKETFASLPSTERGVP---IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASG   77 (603)
T ss_pred             CchhhhhhhccCCCcccCCcc---eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeec
Confidence            888999999999998888443   555  577899999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCe--eEEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeecCCCcEEEEEEec
Q 002782           79 GHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHP  154 (882)
Q Consensus        79 ~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~  154 (882)
                      ...|.|||||....+  +..+++.-.++|..++|++++++++..++.  +..+++-+++|..+..+.||...|.++.|-|
T Consensus        78 D~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp  157 (603)
T KOG0318|consen   78 DVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP  157 (603)
T ss_pred             CCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence            999999999987633  334567778999999999999999987743  3445555557777889999999999999998


Q ss_pred             CCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec----Ccc
Q 002782          155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYE  230 (882)
Q Consensus       155 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~  230 (882)
                      . +...+++|++|++|.+|+-...+...+++.|..-|.++.|+|||.++++++.||.+.+||-.+++.+..+.    +..
T Consensus       158 s-RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG  236 (603)
T KOG0318|consen  158 S-RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG  236 (603)
T ss_pred             C-CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc
Confidence            7 55679999999999999988888888999999999999999999999999999999999999999888776    455


Q ss_pred             eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEE
Q 002782          231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA  310 (882)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (882)
                      .+.++.+.|++.                       ++++++.|.++++||+.+..+..........       ......+
T Consensus       237 sIfalsWsPDs~-----------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-------~dqqvG~  286 (603)
T KOG0318|consen  237 SIFALSWSPDST-----------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-------EDQQVGC  286 (603)
T ss_pred             cEEEEEECCCCc-----------------------eEEEecCCceEEEEEeeccceEEEeecCCch-------hceEEEE
Confidence            788999999986                       8999999999999999998554433222110       0111222


Q ss_pred             EEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee
Q 002782          311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY  390 (882)
Q Consensus       311 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~  390 (882)
                      .+  .+..|++++.+|.+.+++....       .....+.||+..|.++..++ ++.++.+|+.||.|.-|+..++..-+
T Consensus       287 lW--qkd~lItVSl~G~in~ln~~d~-------~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  287 LW--QKDHLITVSLSGTINYLNPSDP-------SVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             EE--eCCeEEEEEcCcEEEEecccCC-------ChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccc
Confidence            22  3888999999999999998743       35678899999999999988 55999999999999999999988775


Q ss_pred             ee-eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEee--eecccccEEEEEEccCCCcEEEEeeCCCeEE
Q 002782          391 VL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK  467 (882)
Q Consensus       391 ~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~  467 (882)
                      .. .+|...|.+++  ....+.  +++.+.|.++++.++..+.....  .... ....+++..+++. +++..+.++.+.
T Consensus       357 ~~g~~h~nqI~~~~--~~~~~~--~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-~QP~~lav~~d~~-~avv~~~~~iv~  430 (603)
T KOG0318|consen  357 LAGKGHTNQIKGMA--ASESGE--LFTIGWDDTLRVISLKDNGYTKSEVVKLG-SQPKGLAVLSDGG-TAVVACISDIVL  430 (603)
T ss_pred             cccccccceEEEEe--ecCCCc--EEEEecCCeEEEEecccCcccccceeecC-CCceeEEEcCCCC-EEEEEecCcEEE
Confidence            54 78999999997  444343  78889999999998765432221  1211 2233788888765 455555555444


Q ss_pred             EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce--eEEEEecccCceEEEEEc
Q 002782          468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFS  545 (882)
Q Consensus       468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s  545 (882)
                      +-+.....              .....-...+++++|++..+|+|+.|+.|+||.+..+.  ....+..|..+|++++||
T Consensus       431 l~~~~~~~--------------~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  431 LQDQTKVS--------------SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             EecCCcce--------------eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence            44443221              11123456899999999999999999999999998754  334566799999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCceeeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCCCce
Q 002782          546 PVDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKI  623 (882)
Q Consensus       546 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v  623 (882)
                      ||+.+||++...+.+.+||+.+.+..... --|...|.+++|+|+..++++|+-|-.|.||+++... .+.....|...|
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV  576 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV  576 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence            99999999999999999999988774333 3399999999999999999999999999999998754 355556899899


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          624 WALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      +.+.|- |...+++.|.|..|++|.+.
T Consensus       577 n~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  577 NSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eeEEEe-cCceEEeccCcceeEEeccc
Confidence            999997 55679999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-50  Score=414.33  Aligned_cols=545  Identities=19%  Similarity=0.296  Sum_probs=435.7

Q ss_pred             ccccccccccccccccCCceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782            6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI   84 (882)
Q Consensus         6 l~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i   84 (882)
                      |+++-...-.++.-|+-..+++||||.++++.... ...+.++.....++.+. -..+|.|+.|||||+++|+|.. +.+
T Consensus        42 LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~l  119 (893)
T KOG0291|consen   42 LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLL  119 (893)
T ss_pred             ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-cee
Confidence            44433334445666666689999999988877765 66777777777777665 3578999999999999988865 589


Q ss_pred             EEEECCC--------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEec
Q 002782           85 RVWDLST--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP  154 (882)
Q Consensus        85 ~iwd~~~--------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~f~~  154 (882)
                      .||....        ....+++.+|-..|+++.|+.|.++|++|+.|.++++|+++..+.  .+.+.+|...|.++-|..
T Consensus       120 qiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~  199 (893)
T KOG0291|consen  120 QIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA  199 (893)
T ss_pred             EEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc
Confidence            9998653        345677889999999999999999999999999999999977655  677889999999999998


Q ss_pred             CCCccEEEEEeCCCcEEEEECCC-----------------------CeE-----------EEEecCcccceEEEEEccCC
Q 002782          155 DTDKSLLFSGSDDATVRVWDLLA-----------------------KKC-----------VATLDKHFSRVTSMAITSDG  200 (882)
Q Consensus       155 ~~~~~~l~sgs~dg~I~vwd~~~-----------------------~~~-----------~~~l~~h~~~v~~l~~s~~~  200 (882)
                      +...  +++.+.||.+.+|....                       ++.           ..-+......|++.+|++..
T Consensus       200 ~~~~--l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t  277 (893)
T KOG0291|consen  200 NSLD--LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT  277 (893)
T ss_pred             Ccce--EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence            7666  99999999999997651                       111           11122233689999999999


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782          201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN  280 (882)
Q Consensus       201 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~  280 (882)
                      ..|+++-..|...++.+....++..+...+                                                  
T Consensus       278 ~~lvvgFssG~f~LyelP~f~lih~LSis~--------------------------------------------------  307 (893)
T KOG0291|consen  278 NLLVVGFSSGEFGLYELPDFNLIHSLSISD--------------------------------------------------  307 (893)
T ss_pred             eEEEEEecCCeeEEEecCCceEEEEeeccc--------------------------------------------------
Confidence            999999999999999998888777665542                                                  


Q ss_pred             CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC-CeEEEEEecccccccceeeeeeeecccCCceEEE
Q 002782          281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL  359 (882)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  359 (882)
                                              ..+..+++...+..++.++.. |.+.+|+....       .......||...+.++
T Consensus       308 ------------------------~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------sYVlKQQgH~~~i~~l  356 (893)
T KOG0291|consen  308 ------------------------QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------SYVLKQQGHSDRITSL  356 (893)
T ss_pred             ------------------------ceeeEEEecccCCEEEEcCCccceEEEEEeecc-------ceeeeccccccceeeE
Confidence                                    223333444444445444443 55556655422       2334567899999999


Q ss_pred             EEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec
Q 002782          360 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG  439 (882)
Q Consensus       360 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  439 (882)
                      +|+| +++++++|+.||.|++||..++-|..++..|+..|+.+.  +...++. +++.+-||+|+.||+...+..+++..
T Consensus       357 ~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~--f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  357 AYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ--FTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             EECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE--EEecCCE-EEEeecCCeEEeeeecccceeeeecC
Confidence            9998 899999999999999999999999999999999999998  8888887 99999999999999999999888875


Q ss_pred             cc-ccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc
Q 002782          440 HM-GAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT  517 (882)
Q Consensus       440 ~~-~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~  517 (882)
                      .. -...|++..|.|. ++++|+.|. .|.+|++.++.          ...++.+|+++|.+++|+|++..||++|.|++
T Consensus       433 P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq----------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  433 PEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ----------LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             CCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe----------eeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            43 4677899999987 677777764 59999998774          67788999999999999999999999999999


Q ss_pred             EEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec--------------------C
Q 002782          518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--------------------H  577 (882)
Q Consensus       518 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------h  577 (882)
                      |++||+-.......--.+...+..++|+|||+.|+++.-||+|.+||+..+..+.++.|                    .
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            99999865533333333778899999999999999999999999999988766655442                    2


Q ss_pred             cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc---------------------------------------
Q 002782          578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---------------------------------------  618 (882)
Q Consensus       578 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------------------  618 (882)
                      ....+.+++++||.++++||....|++|++.++-.++.++-                                       
T Consensus       582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~  661 (893)
T KOG0291|consen  582 GKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRID  661 (893)
T ss_pred             CCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccc
Confidence            34688999999999999999999999999987655543310                                       


Q ss_pred             -----------------CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          619 -----------------HEDKIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       619 -----------------h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                                       +.-.|.++.|+|.|+.++.++..| +.||.+.+
T Consensus       662 ~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~  710 (893)
T KOG0291|consen  662 IALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT  710 (893)
T ss_pred             ccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence                             122478899999999999999998 57777643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-54  Score=410.34  Aligned_cols=336  Identities=29%  Similarity=0.507  Sum_probs=308.2

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782           93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV  172 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v  172 (882)
                      ++..++.||..+|.|++|+|+|.+||+|+.|.++++||+.+..+.++.++|...|.|++|+||+..  |++|+.||+|++
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~l  183 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRL  183 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEE
Confidence            455678899999999999999999999999999999999999999999999999999999999987  999999999999


Q ss_pred             EECCCCeEE-EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782          173 WDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY  251 (882)
Q Consensus       173 wd~~~~~~~-~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (882)
                      ||..+|+++ ..+.+|...|++++|.|-.                                                   
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------------------  212 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------------------  212 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccc---------------------------------------------------
Confidence            999998866 5789999999999886531                                                   


Q ss_pred             hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782          252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY  331 (882)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  331 (882)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (480)
T KOG0271|consen  213 --------------------------------------------------------------------------------  212 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782          332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK  411 (882)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  411 (882)
                                                                                                ..|+.+
T Consensus       213 --------------------------------------------------------------------------l~p~~r  218 (480)
T KOG0271|consen  213 --------------------------------------------------------------------------LVPPCR  218 (480)
T ss_pred             --------------------------------------------------------------------------cCCCcc
Confidence                                                                                      223444


Q ss_pred             EEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       412 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                      . ++++++||.++|||+..+.++..+.+|+.+|+|+.|--+|  ++++|+.|++|++|+...+.          ....+.
T Consensus       219 ~-las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~----------~~r~lk  285 (480)
T KOG0271|consen  219 R-LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK----------LCRELK  285 (480)
T ss_pred             c-eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh----------HHHhhc
Confidence            4 9999999999999999999999999999999999998654  89999999999999987542          677889


Q ss_pred             hcCCCeeEEEEc-----------CCC-------------------------cEEEEEcCCCcEEEEeCCCc-eeEEEEec
Q 002782          492 AHGKDINSLAVA-----------PND-------------------------SLVCTGSQDRTACVWRLPDL-VSVVTFRG  534 (882)
Q Consensus       492 ~~~~~i~~~~~s-----------~~~-------------------------~~la~~s~dg~i~iwd~~~~-~~~~~~~~  534 (882)
                      +|...|+.++.+           |.+                         ..+++|+.|.++.+|+.... +++..+.+
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence            999999999887           223                         35999999999999997654 57888999


Q ss_pred             ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEE
Q 002782          535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA  614 (882)
Q Consensus       535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~  614 (882)
                      |..-|..+.||||++++|+++-|..|++||..+|+.+.+|+||-+.|..++|+.|.++|++|+.|.++++|++++.+...
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       615 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      .+.+|.++|.++.|+|||..+++|+.|..+++|.
T Consensus       446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-54  Score=407.36  Aligned_cols=368  Identities=26%  Similarity=0.436  Sum_probs=308.0

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      -..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||..
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEE-EEeecCCCcEEEEEEecC---CCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782          133 GGFCT-HYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR  208 (882)
Q Consensus       133 ~~~~~-~~~~~h~~~V~~l~f~~~---~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~  208 (882)
                      +|.++ ..+++|...|++++|.|-   ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| ++++++.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~  266 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ  266 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence            88765 568999999999999762   233469999999999999999999999999999999999997665 7889998


Q ss_pred             CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782          209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  288 (882)
Q Consensus       209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~  288 (882)
                      |++|++|+...+                                                                    
T Consensus       267 DrtIkvw~a~dG--------------------------------------------------------------------  278 (480)
T KOG0271|consen  267 DRTIKVWRALDG--------------------------------------------------------------------  278 (480)
T ss_pred             CceEEEEEccch--------------------------------------------------------------------
Confidence            988888876432                                                                    


Q ss_pred             ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782          289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  368 (882)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  368 (882)
                                                                                                      
T Consensus       279 --------------------------------------------------------------------------------  278 (480)
T KOG0271|consen  279 --------------------------------------------------------------------------------  278 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782          369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  448 (882)
Q Consensus       369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  448 (882)
                                        .+.+.+.+|...|+.++  .+.+  +.+-+|.-|.+=+-....+ +...  .+.. ...  +
T Consensus       279 ------------------~~~r~lkGHahwvN~la--lsTd--y~LRtgaf~~t~~~~~~~s-e~~~--~Al~-rY~--~  330 (480)
T KOG0271|consen  279 ------------------KLCRELKGHAHWVNHLA--LSTD--YVLRTGAFDHTGRKPKSFS-EEQK--KALE-RYE--A  330 (480)
T ss_pred             ------------------hHHHhhcccchheeeee--ccch--hhhhccccccccccCCChH-HHHH--HHHH-HHH--H
Confidence                              23336778888888886  3333  3355554432211111000 0000  0000 000  1


Q ss_pred             EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS  528 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~  528 (882)
                      ..+++...+++|+.|.++.+|+-...         .++.....+|..-|+.+.||||++++|++|-|+.|++||..+|+.
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~---------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~  401 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKS---------KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF  401 (480)
T ss_pred             hhccCcceeEEecCCceEEEeccccc---------ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence            12233357999999999999996533         225566788999999999999999999999999999999999999


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      +.+|+||-.+|..++|+.|.++|++|+.|.++++|++++.+....+.||...|.++.|+|||..+++|+.|..+++|.
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-50  Score=415.29  Aligned_cols=556  Identities=22%  Similarity=0.317  Sum_probs=433.2

Q ss_pred             CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782           23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH  101 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h  101 (882)
                      .++.-+||.-+||+|..+ .|+||+..++....++.||...|+++.|+..|..||+|+.|+.|.+||+-...-+..++||
T Consensus        69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH  148 (888)
T KOG0306|consen   69 TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH  148 (888)
T ss_pred             EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecc
Confidence            367778999999999976 8999999999999999999999999999999999999999999999999998899999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC---
Q 002782          102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---  178 (882)
Q Consensus       102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~---  178 (882)
                      +..|+.+-|..+.++|++.+.|+.|++||+++..|..+.-.|.+.|+.+++.+  +  ++++++.|+.+++|++...   
T Consensus       149 kd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~  224 (888)
T KOG0306|consen  149 KDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDE  224 (888)
T ss_pred             hHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--c--eEEEEecCCceEEEEeeccccc
Confidence            99999999999899999999999999999999999999999999999999987  3  4999999999999998211   


Q ss_pred             ----e-----EEEE-ecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc------ceee----EEEec
Q 002782          179 ----K-----CVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY------EMVE----AVCAI  238 (882)
Q Consensus       179 ----~-----~~~~-l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~----~~~~~  238 (882)
                          .     ...+ .+...+....+...++++++++-+.|..+.++.+.....+......      ....    .....
T Consensus       225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~  304 (888)
T KOG0306|consen  225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE  304 (888)
T ss_pred             ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence                1     1111 2233445666777888999999999999999998765422211100      0000    00000


Q ss_pred             CCCCCcccccccchhhh----hhcc-ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc
Q 002782          239 PPGSAFDSFLSSYNQQT----IKKK-RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL  313 (882)
Q Consensus       239 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (882)
                      ..-+.....+.......    .... ..... ..+..-.+..+.++.++.. .-....+..........+...+.+++++
T Consensus       305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~-~~lv~l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~vS  382 (888)
T KOG0306|consen  305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTE-NTLVLLANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCVS  382 (888)
T ss_pred             hhHHHHHHHHHheechhheeEEEEEecCCcc-eeEEEeecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEee
Confidence            00000000000000000    0000 00011 1111144455555555441 1111222233345566677778888886


Q ss_pred             cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee
Q 002782          314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA  393 (882)
Q Consensus       314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  393 (882)
                      .+. .++...+++.+.+|+....       .+.+.+..  +.+.+..|.| ++.++++|..+|.+.+||+.+...+.+.+
T Consensus       383 ~d~-~~~~Sga~~SikiWn~~t~-------kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  383 SDS-ILLASGAGESIKIWNRDTL-------KCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             cCc-eeeeecCCCcEEEEEccCc-------ceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh
Confidence            654 4555667789999998743       33333332  2677888887 88899999999999999999999999999


Q ss_pred             CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-----ceEEeeee-------cccccEEEEEEccCCCcEEEEee
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGS  461 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~-------~~~~~v~~v~~s~~~~~~l~s~~  461 (882)
                      .|.+.+.+++  ..|++.. +++|+.|.+|++||+.-     +.....+.       .-...|.|+.+||++. +|+.+-
T Consensus       452 AHdgaIWsi~--~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsL  527 (888)
T KOG0306|consen  452 AHDGAIWSIS--LSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSL  527 (888)
T ss_pred             ccccceeeee--ecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEe
Confidence            9999999999  8899998 99999999999998642     21111111       2356899999999988 899999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782          462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS  541 (882)
Q Consensus       462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  541 (882)
                      -|.+|++|-+++.          +....+.+|.-||.|+.+|||+++++|||.|++|++|-++-|.+-..+-+|...|.+
T Consensus       528 LdnTVkVyflDtl----------KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  528 LDNTVKVYFLDTL----------KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             ccCeEEEEEecce----------eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            9999999998854          366778899999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782          542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  609 (882)
Q Consensus       542 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~  609 (882)
                      +.|-|...++++++.|+.|+-||-...++++++.+|...|++++.+|+|.+++|++.|.+|++|.-..
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-47  Score=379.97  Aligned_cols=529  Identities=20%  Similarity=0.259  Sum_probs=417.4

Q ss_pred             cccccCC-----ceEEccCCCEEEEEeCC-eEEEEEcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeC--CCcEEE
Q 002782           17 QQFYGGG-----PLVVSSDGSFIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRV   86 (882)
Q Consensus        17 ~~~y~g~-----~va~s~dg~~la~~~~~-~I~i~d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~--dg~i~i   86 (882)
                      ...|+.+     ...+||.|-|+|.|... .|+|||....+  +...++.-.++|..++|++|+++|++.+.  +...++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            3456665     34589999998888754 89999976533  33456666789999999999999887654  334444


Q ss_pred             EECCCCeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782           87 WDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus        87 wd~~~~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs  165 (882)
                      +-+.+|..+..+.||...|.+++|-|... ++++|+.|++|.+|+=.--+...+++.|..-|.++.|+||+..  +++.+
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g  209 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG  209 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec
Confidence            44458889999999999999999999876 5999999999999997766767788899999999999999876  99999


Q ss_pred             CCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeE----EEec
Q 002782          166 DDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA----VCAI  238 (882)
Q Consensus       166 ~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~  238 (882)
                      .||.|.+||-.+++.+..+.   +|.+.|.+++|+||++.+++++.|.++++||+.+.+++++++....++.    +.+.
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq  289 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ  289 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence            99999999999999999997   8999999999999999999999999999999999999999887665332    2222


Q ss_pred             CCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCc
Q 002782          239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG  318 (882)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (882)
                                               ..++++.+.+|.+.+++......          ......+...++++..++++..
T Consensus       290 -------------------------kd~lItVSl~G~in~ln~~d~~~----------~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  290 -------------------------KDHLITVSLSGTINYLNPSDPSV----------LKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             -------------------------CCeEEEEEcCcEEEEecccCCCh----------hheecccccceeEEEEcCCCCE
Confidence                                     24799999999999999876632          1223456789999999999999


Q ss_pred             EEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee--eeCCC
Q 002782          319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHS  396 (882)
Q Consensus       319 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~  396 (882)
                      ++.++.||.|.-|+.......      ...-.+|...|..++..  +...+.+.+.|..+++.++........  .....
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~------~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~  406 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSD------RLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS  406 (603)
T ss_pred             EEeeccCceEEEEecCCcccc------ccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence            999999999999998754321      11225688888888875  335788888889999998864433222  12222


Q ss_pred             cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782          397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  476 (882)
Q Consensus       397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~  476 (882)
                      .+. +++  ..+++.. ++..+.++.+.+-|...-..+.    -.-...+++++|++. .++.|++|+.|++|.+.... 
T Consensus       407 QP~-~la--v~~d~~~-avv~~~~~iv~l~~~~~~~~~~----~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~-  476 (603)
T KOG0318|consen  407 QPK-GLA--VLSDGGT-AVVACISDIVLLQDQTKVSSIP----IGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDE-  476 (603)
T ss_pred             Cce-eEE--EcCCCCE-EEEEecCcEEEEecCCcceeec----cccccceEEEcCCCC-EEEEecccceEEEEEecCCc-
Confidence            222 554  6677766 4444444444333333222111    234567899999987 79999999999999998653 


Q ss_pred             CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE-ecccCceEEEEEcCCCCEEEEee
Q 002782          477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITAS  555 (882)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~  555 (882)
                             .........|..+|+++++|||+.+||++...+.+.+||+.+.+..... .-|...|.+++|+|+..++|||+
T Consensus       477 -------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS  549 (603)
T KOG0318|consen  477 -------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS  549 (603)
T ss_pred             -------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence                   2234455679999999999999999999999999999999988764433 34999999999999999999999


Q ss_pred             CCCcEEEEecCCCc-eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          556 GDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       556 ~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      -|..|.||+++... .+.....|...|+.+.|.. ...+++.+.|..|++|++.
T Consensus       550 lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  550 LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence            99999999998763 3455567999999999974 4689999999999999873

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-46  Score=384.21  Aligned_cols=562  Identities=16%  Similarity=0.234  Sum_probs=433.3

Q ss_pred             cCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEe
Q 002782           21 GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        21 ~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~--~dg~i~iwd~~~~~~~~~~   98 (882)
                      ++..++.+|-..++|+..+-.|.+||+...++-+.+..+..+++|+|||++|+|+|+|-  ....+++|++.....+..|
T Consensus        39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf  118 (1080)
T KOG1408|consen   39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF  118 (1080)
T ss_pred             cCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh
Confidence            44589999999999999999999999999998888889999999999999999999984  7788999999999999999


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782           99 KGHDGPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL  176 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~  176 (882)
                      ..|+-.|+|++|+|.++|+++.+  .|-.|.+|||........- .-...|..++|+.|+.+  +++.+. ..|++|.++
T Consensus       119 vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSY--fvT~gn-rHvk~wyl~  194 (1080)
T KOG1408|consen  119 VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSY--FVTSGN-RHVKLWYLQ  194 (1080)
T ss_pred             hhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEccCCce--eeeeee-eeEEEEEee
Confidence            99999999999999999999877  4567889998755433222 24577999999998875  777654 669999987


Q ss_pred             CCeEEE-------------------------------------EecCc-----------------ccceEEEEEccCCCE
Q 002782          177 AKKCVA-------------------------------------TLDKH-----------------FSRVTSMAITSDGST  202 (882)
Q Consensus       177 ~~~~~~-------------------------------------~l~~h-----------------~~~v~~l~~s~~~~~  202 (882)
                      .++...                                     +-.+|                 .....|+++  ..++
T Consensus       195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~  272 (1080)
T KOG1408|consen  195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRL  272 (1080)
T ss_pred             ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecce
Confidence            654110                                     00111                 011223333  4568


Q ss_pred             EEEEeCCCeEEEEecCCceeeeeecCcceeeEEE--ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782          203 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC--AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN  280 (882)
Q Consensus       203 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~  280 (882)
                      +++|+.+|.|++|+-.+.....++|.......-.  .....                        .+..           
T Consensus       273 I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~------------------------~~~s-----------  317 (1080)
T KOG1408|consen  273 IACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE------------------------PKNS-----------  317 (1080)
T ss_pred             EEEeeccceeeecCcchhhhccccccccccccchhhccccc------------------------cccc-----------
Confidence            9999999999999998877776666543211000  00000                        0000           


Q ss_pred             CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEE
Q 002782          281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK  360 (882)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  360 (882)
                                       ......-....++.|.+....+.++..|..+++|++.....    .........|...|.++.
T Consensus       318 -----------------~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k----vgk~~s~lyHS~ciW~Ve  376 (1080)
T KOG1408|consen  318 -----------------ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK----VGKCSSMLYHSACIWDVE  376 (1080)
T ss_pred             -----------------ccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc----ccceeeeeeccceeeeec
Confidence                             00001113346677888899999999999999999876542    223344555666666665


Q ss_pred             EeCC----------CCcEEEEEEcCCcEEEEeCCCceeeeee-------------------------------------e
Q 002782          361 FLGE----------EEQYLAVATNIEQVQVYDLSSMSCSYVL-------------------------------------A  393 (882)
Q Consensus       361 ~~~~----------~~~~l~~~~~~~~i~i~d~~~~~~~~~~-------------------------------------~  393 (882)
                      -.|-          -...+.+++.|++|++|++..+..-..+                                     .
T Consensus       377 ~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~  456 (1080)
T KOG1408|consen  377 NLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTC  456 (1080)
T ss_pred             cccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhc
Confidence            5441          1245899999999999998752111000                                     0


Q ss_pred             CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC--CCcEEEEeeCCCeEEEEec
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--~~~~l~s~~~dg~i~~wd~  471 (882)
                      +....+.++.  .+|++++ |++|..-|++++|++..-+.+....+|...|.|+.++..  +..+|++++.|.-|.+||+
T Consensus       457 d~r~G~R~~~--vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  457 DSRFGFRALA--VSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             CcccceEEEE--ECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence            1223467777  8999998 999999999999999999888899999999999999842  3348999999999999998


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC--cEEEEEcCCCcEEEEeCCCceeEEEEec-----ccCceEEEEE
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEF  544 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~la~~s~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~  544 (882)
                      ...         .....++.+|...|+++.|.-+|  ..+++++.|+.|.+--.........+..     .+..+..++.
T Consensus       534 ~rn---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  534 KRN---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             ccc---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence            743         34677889999999999999887  7788888898775433221111112221     2346889999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCceeeEeec---CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC
Q 002782          545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED  621 (882)
Q Consensus       545 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  621 (882)
                      .|..+++++++.|..|+||++.+|+..+.|++   |.+....+...|.|.||++.+.|.++.++|..+|+|+.+..+|..
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE  684 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE  684 (1080)
T ss_pred             CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence            99999999999999999999999999999986   667888999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHH
Q 002782          622 KIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE  656 (882)
Q Consensus       622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  656 (882)
                      .|+.+.|++|.+.|++.+.||.|.||.+.......
T Consensus       685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~  719 (1080)
T KOG1408|consen  685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIR  719 (1080)
T ss_pred             heeeeeecccchhheeecCCceEEEEECchhHhHH
Confidence            99999999999999999999999999998765433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-43  Score=368.05  Aligned_cols=588  Identities=18%  Similarity=0.237  Sum_probs=463.7

Q ss_pred             cccccccccccccCCceEEccCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782            9 SYGCEPVLQQFYGGGPLVVSSDGS--FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV   86 (882)
Q Consensus         9 ~~~~~~~~~~~y~g~~va~s~dg~--~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~i   86 (882)
                      -|++.+.+..+-++-++.+..-|+  ++.++.+....+||.++-..+..-+.+.+.|+|++-+.+  ++.+|+. ..|.+
T Consensus        23 iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~--~vy~A~g-~~i~~   99 (910)
T KOG1539|consen   23 IFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKD--YVYVASG-NKIYA   99 (910)
T ss_pred             cccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCc--eEEEecC-cEEEE
Confidence            366666666666666777766554  344445669999999998888877788999999987654  4444443 46777


Q ss_pred             EECCCC-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eE----EEEeecCCCcEEEEEEecCCCccE
Q 002782           87 WDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FC----THYFKGHKGVVSSILFHPDTDKSL  160 (882)
Q Consensus        87 wd~~~~-~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~----~~~~~~h~~~V~~l~f~~~~~~~~  160 (882)
                      |-  -| ...+.+.+|.+.|.-+.  +=|.+++++..++.+.||+..++ ..    ...++.....|+++ +||..-.+-
T Consensus       100 ~~--rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNK  174 (910)
T KOG1539|consen  100 YA--RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNK  174 (910)
T ss_pred             EE--ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheee
Confidence            75  44 45567788887777764  45778999999999999999874 11    12223323337777 578766667


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc-ceeeEEEecC
Q 002782          161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIP  239 (882)
Q Consensus       161 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~  239 (882)
                      ++.|+.+|.+.+|++.+++.+.+++++.+.|+++.=+|-=..++.|..+|+|.+++++..+.+.++... ..+.++.|-.
T Consensus       175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt  254 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT  254 (910)
T ss_pred             EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc
Confidence            999999999999999999999999999999999999999899999999999999999999999999886 8899999988


Q ss_pred             CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782          240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL  319 (882)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (882)
                      +|.                      ..+++++..|.+.+||++...+......         .+..++....+.|...-+
T Consensus       255 DG~----------------------p~las~~~~G~m~~wDLe~kkl~~v~~n---------ah~~sv~~~~fl~~epVl  303 (910)
T KOG1539|consen  255 DGN----------------------PLLASGRSNGDMAFWDLEKKKLINVTRN---------AHYGSVTGATFLPGEPVL  303 (910)
T ss_pred             CCC----------------------eeEEeccCCceEEEEEcCCCeeeeeeec---------cccCCcccceecCCCceE
Confidence            885                      5788899999999999998855433221         223667788888999999


Q ss_pred             EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee-------
Q 002782          320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-------  392 (882)
Q Consensus       320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-------  392 (882)
                      +....|+.+.+|-......   .....+.-.||..+..+++|....+..+..+..|+.++.+++......+.+       
T Consensus       304 ~ta~~DnSlk~~vfD~~dg---~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~  380 (910)
T KOG1539|consen  304 VTAGADNSLKVWVFDSGDG---VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK  380 (910)
T ss_pred             eeccCCCceeEEEeeCCCC---cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence            9999999999988774432   234556677999999999999999999999999999999887432111100       


Q ss_pred             -----------eCCCcceEEeeeeeec--CCCEEEEEeecCCeEEEEeCCCceEEee-e-----ecccccEEEEEEccCC
Q 002782          393 -----------AGHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGV-G-----TGHMGAVGAVAFSKKL  453 (882)
Q Consensus       393 -----------~~~~~~v~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-----~~~~~~v~~v~~s~~~  453 (882)
                                 .-.-.+|..+++....  +-...++..-.+...+.|++.+...-+. +     ......+++++.++.|
T Consensus       381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG  460 (910)
T KOG1539|consen  381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG  460 (910)
T ss_pred             ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence                       0112344444411111  1122255555677899999987654222 2     2234789999999998


Q ss_pred             CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe
Q 002782          454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  533 (882)
Q Consensus       454 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~  533 (882)
                      + +.+.|...|+|.+|++..+-.       .........|..+|+.++...-++.+++++.+|.+++||.....++..+.
T Consensus       461 N-F~~IG~S~G~Id~fNmQSGi~-------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~  532 (910)
T KOG1539|consen  461 N-FVFIGYSKGTIDRFNMQSGIH-------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR  532 (910)
T ss_pred             c-eEEEeccCCeEEEEEcccCee-------ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence            7 899999999999999987621       11112236799999999999999999999999999999999988777776


Q ss_pred             cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                       -..++.++..+.....++.+..|-.|+++|+.+.+.++.|.||.+.|+.++|||||++|++++.|++|++||+.++.++
T Consensus       533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence             4567888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCC-CCEEEEE
Q 002782          614 ATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWH  648 (882)
Q Consensus       614 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iw~  648 (882)
                      -.+. -..+..++.|||+|.+|||...| .-|.+|.
T Consensus       612 D~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  612 DGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            8875 57789999999999999999988 6689996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-43  Score=360.39  Aligned_cols=537  Identities=20%  Similarity=0.283  Sum_probs=388.2

Q ss_pred             ceEEccCCCEEEEEeCC---eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEe
Q 002782           24 PLVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~---~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~   98 (882)
                      +||||++|+|+|+|.-+   .+++|++.....+..|..|.-.|+|++|+|.++|+++.+.  |-.|.+|||........-
T Consensus        83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn  162 (1080)
T KOG1408|consen   83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN  162 (1080)
T ss_pred             EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence            79999999999999854   6999999999999999999999999999999999997665  557889999765544443


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------Ee------------------------e
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-------------YF------------------------K  141 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-------------~~------------------------~  141 (882)
                      + -...|.+++|+.||.|+++.+. ..|++|.++.++...             .+                        .
T Consensus       163 k-iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~q  240 (1080)
T KOG1408|consen  163 K-ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQ  240 (1080)
T ss_pred             c-cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecc
Confidence            3 3578999999999999999864 889999987654110             00                        0


Q ss_pred             cC-----------------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC-c----------------
Q 002782          142 GH-----------------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H----------------  187 (882)
Q Consensus       142 ~h-----------------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~-h----------------  187 (882)
                      ||                 +..-.|++.+.    .+++.|+.+|.|++++..+-..+.+++. |                
T Consensus       241 GhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~  316 (1080)
T KOG1408|consen  241 GHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN  316 (1080)
T ss_pred             cceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence            11                 11123344432    4699999999999999877654444321 1                


Q ss_pred             -------ccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee----ecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782          188 -------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT----VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  256 (882)
Q Consensus       188 -------~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (882)
                             .....++.|++....|.+...|..+++||+++-..+..    +-+..-+..+...|-.-      ..      
T Consensus       317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv------~~------  384 (1080)
T KOG1408|consen  317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNV------HS------  384 (1080)
T ss_pred             cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccc------cC------
Confidence                   11345788999999999999999999999987543322    22222233332222100      00      


Q ss_pred             hccccccceEEEEEcCCCeEEEEECCCc---eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEe
Q 002782          257 KKKRRSLEIHFITVGERGIVRMWNADSA---CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT  333 (882)
Q Consensus       257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  333 (882)
                      .......+..|++++.|++||+|+++..   .++.+.......                      +-....|++..+...
T Consensus       385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l----------------------~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL----------------------SKIPYEDSTQQIMHD  442 (1080)
T ss_pred             cccccCCccceeEecCCCcEEEeecccccccceeecccchhhh----------------------hcCccccCchhhhhh
Confidence            0011123457999999999999999874   222211110000                      000011111111000


Q ss_pred             cccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEE
Q 002782          334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL  413 (882)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  413 (882)
                      ...+  ..+. ......+....+.+++.+| ++++||.|...|.+++|++...+....+..|...|.|+.+.+-.-++.+
T Consensus       443 ~~~~--~fdk-a~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  443 ASAG--IFDK-ALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             ccCC--cccc-cchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence            0000  0000 0011122334567777766 8999999999999999999999999999999999999994443445567


Q ss_pred             EEEeecCCeEEEEeCCC-ceEEeeeecccccEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          414 IVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       414 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                      |++++.|.-|.+||... -.++.++.+|...|+++.|.-.| +..+++++.|+.|.+--...... .    ......+..
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g----~~f~r~t~t  593 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-G----RLFPRHTQT  593 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC-c----eeccccccc
Confidence            99999999999999875 45677889999999999997665 34689999999886643332110 0    111111112


Q ss_pred             hcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC
Q 002782          492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  568 (882)
Q Consensus       492 ~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  568 (882)
                      .....+..+++.|..++++++++|+.|+||++.++++.+.|++   |.+....+...|.|.+|++.+.|+++.++|..+|
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            2234678999999999999999999999999999999999997   5667888999999999999999999999999999


Q ss_pred             ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782          569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  609 (882)
Q Consensus       569 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~  609 (882)
                      +|+.+..||...|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999999999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.4e-45  Score=352.24  Aligned_cols=287  Identities=28%  Similarity=0.417  Sum_probs=270.7

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC-CCEEEEEeecCCeEEEE
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLW  426 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw  426 (882)
                      ...|...++..+.|+. ++.++++|+-+|.+++|+..+.....++.+|...+.++.  |.|. ....+++|+.||++++|
T Consensus       170 SQ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw  246 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLW  246 (459)
T ss_pred             hhccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeee
Confidence            3445667777777776 889999999999999999999999999999999999999  8887 34449999999999999


Q ss_pred             eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782          427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  506 (882)
Q Consensus       427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  506 (882)
                      ++.+..++..+.+|...|..++|+|+|+ +|++++.|.+-++||+.+..          ......+|...|.+++|.|||
T Consensus       247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~----------ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  247 KLSQETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS----------ELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ccCCCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch----------hhHhhcccccccceeEecCCC
Confidence            9999999999999999999999999998 89999999999999998764          556668999999999999999


Q ss_pred             cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEE
Q 002782          507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  586 (882)
Q Consensus       507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  586 (882)
                      .++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...++.++.+|.+-|+.++|
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          587 LT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       587 s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      +| .|.+|+|++.|++++||...++.++.++.+|+++|.++..++|+.+++|++.|.++++|.
T Consensus       396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            98 788999999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-43  Score=339.06  Aligned_cols=284  Identities=32%  Similarity=0.491  Sum_probs=264.5

Q ss_pred             CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe
Q 002782           58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGF  135 (882)
Q Consensus        58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~--~~~lasg~~dg~v~vwd~~~~~  135 (882)
                      |.+.+|+.+.||+|++.||||+-+|.+++|+.++...+.+|.||...|.++.|+|.  +..||||+.||++++|++++..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            56889999999999999999999999999999999999999999999999999997  5689999999999999999999


Q ss_pred             EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782          136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  215 (882)
Q Consensus       136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw  215 (882)
                      ++..+.+|...|..++|+|+|+.  |+|++.|.+-++||+.++..+....||...|.+++|.|||..+++||.|..-+||
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~--L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKF--LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             chhhhhcchhhheeeeecCCCce--eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence            99999999999999999998876  9999999999999999999999999999999999999999999999998877777


Q ss_pred             ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782          216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  295 (882)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~  295 (882)
                      |++++                                                                           
T Consensus       331 DlRtg---------------------------------------------------------------------------  335 (459)
T KOG0272|consen  331 DLRTG---------------------------------------------------------------------------  335 (459)
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            76543                                                                           


Q ss_pred             eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782          296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  375 (882)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  375 (882)
                                                                                                      
T Consensus       336 --------------------------------------------------------------------------------  335 (459)
T KOG0272|consen  336 --------------------------------------------------------------------------------  335 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  455 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~  455 (882)
                                 .++..+.+|..+|..++  |+|+|.. +++|+.|++++|||+.....+.++.+|..-|+.|.|+|....
T Consensus       336 -----------r~im~L~gH~k~I~~V~--fsPNGy~-lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~  401 (459)
T KOG0272|consen  336 -----------RCIMFLAGHIKEILSVA--FSPNGYH-LATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY  401 (459)
T ss_pred             -----------cEEEEecccccceeeEe--ECCCceE-EeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence                       34446778889999998  8999987 999999999999999999999999999999999999997777


Q ss_pred             EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782          456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  522 (882)
Q Consensus       456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd  522 (882)
                      +|++++.|+++++|...+.          .+...+.+|.+.|.+++++||+..+++++.|+++++|.
T Consensus       402 fL~TasyD~t~kiWs~~~~----------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  402 FLVTASYDNTVKIWSTRTW----------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEEcccCcceeeecCCCc----------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999997754          37788899999999999999999999999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-40  Score=328.37  Aligned_cols=427  Identities=19%  Similarity=0.313  Sum_probs=363.1

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      ..+.|.+++|+|....-+++++. -.+.+|+..+......+....+.+.+++  +-.||+. +++|...|.|++||+.+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~L-laaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGRL-LAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCeE-EEccCCcCcEEEeccccH
Confidence            45689999999988888888776 7899999999888888888888999998  7799987 999999999999998887


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEE
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVC  510 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la  510 (882)
                      ..++.+.+|+.++..+.|+|++...+++|+.|+.+++||+.+..          ....+.+|...|.|.+++|. +.+++
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEE
Confidence            78889999999999999999999899999999999999998652          24456789999999999995 56899


Q ss_pred             EEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe
Q 002782          511 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT  588 (882)
Q Consensus       511 ~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~  588 (882)
                      +|+.||.|++||++.. ..+.++. |..+|..+.|-|.|..++++++ ..|+|||+.+| +.+..+..|...|+|+++..
T Consensus       171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS  248 (487)
T ss_pred             ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence            9999999999999987 5566665 9999999999999999999987 68999999865 45555666999999999999


Q ss_pred             CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHHHhhhh------
Q 002782          589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE------  662 (882)
Q Consensus       589 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------  662 (882)
                      ++..|++++-||.|++||+.+.+.+..+. ..++|.+++++||++.++.|..||.+.+-+...+++........      
T Consensus       249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~~r~~r~~~  327 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPKRRADRSDG  327 (487)
T ss_pred             CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCcccccccccccc
Confidence            99999999999999999999999999887 68899999999999999999999998887554443321110000      


Q ss_pred             --------------------HHHHhccchHHHhhhccchHHHHHHHhh-cCCchhHHHHHHHHHhcchhHHHHHHHHhcc
Q 002782          663 --------------------EEAVLRGQELENAVLDADYTKAIQVAFE-LRRPHKLFELFASVCRKREAELQIEKALHAL  721 (882)
Q Consensus       663 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  721 (882)
                                          +..-.+-..++..+.+.+|.+||..+++ ...|..+..++.++    .++..+..||..+
T Consensus       328 ~~v~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kkALd~vl~~~~~pelvvavl~eL----~~Rg~l~~AL~gr  403 (487)
T KOG0310|consen  328 FFVKVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKKALDHVLEPKKDPELVVAVLSEL----VHRGGLRRALAGR  403 (487)
T ss_pred             ceEeeeccccccccceeEeccccccCCchHHHHHhhhhHHHHHHHHhcccCChhHHHHHHHHH----HHhhHHHHHhcCc
Confidence                                0000123446788899999999999998 66676555555544    3456899999999


Q ss_pred             CHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheec
Q 002782          722 GKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTL  800 (882)
Q Consensus       722 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~  800 (882)
                      ++.++..||.||.+..+..|++.++..|...||.+|++. +...|.+.+.++.|..-.++..+--.+|++..++||...
T Consensus       404 de~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~-i~~s~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL~  481 (487)
T KOG0310|consen  404 DESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARD-IEGSPMLAKLIQALRGKVEQEVRVQKELLRLIGMLDMLG  481 (487)
T ss_pred             cHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999954 777888999999999999988888888888888888755

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=325.72  Aligned_cols=534  Identities=19%  Similarity=0.278  Sum_probs=406.0

Q ss_pred             eEEccCCCEEEEEeCCeEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ee----EEEe
Q 002782           25 LVVSSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-KC----LRSW   98 (882)
Q Consensus        25 va~s~dg~~la~~~~~~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~-~~----~~~~   98 (882)
                      .|+..+..+++++.++.|.+|-  -| ...+.+.+|...|.-+.  |-|.+++++..++.+.||+..++ ..    +...
T Consensus        80 ~alas~~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~  155 (910)
T KOG1539|consen   80 TALASDKDYVYVASGNKIYAYA--RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFL  155 (910)
T ss_pred             EEEEecCceEEEecCcEEEEEE--ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceee
Confidence            4566788899999999999986  45 46678888888887665  45889999999999999999874 22    1222


Q ss_pred             ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782           99 KGHDGPAIGMACHPSG--GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL  176 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~--~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~  176 (882)
                      +.....|+++ ++|..  +.++.|+.+|.+.+|++.+++.+++++++...|+++.-+|--+  +++.|..+|+|.++++.
T Consensus       156 ~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK  232 (910)
T KOG1539|consen  156 KVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLK  232 (910)
T ss_pred             eccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcc
Confidence            3222337776 46643  4588899999999999999999999999999999999999654  59999999999999999


Q ss_pred             CCeEEEEecCcccceEEEEEccCCCEE-EEEeCCCeEEEEecCCceeeeeec--CcceeeEEEecCCCCCcccccccchh
Q 002782          177 AKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQ  253 (882)
Q Consensus       177 ~~~~~~~l~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (882)
                      .++.+.+++...+.|++++|..||..+ ++++..|.+.+||++..+......  +...+....+.+.             
T Consensus       233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-------------  299 (910)
T KOG1539|consen  233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-------------  299 (910)
T ss_pred             cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-------------
Confidence            999999998777999999999999865 555666999999999887665443  2234444444443             


Q ss_pred             hhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc-cCCCcEEEEEeCCeEEEEE
Q 002782          254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYT  332 (882)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~~~~  332 (882)
                                ...+++.+.|..+++|=.+++....     ..... ...+..+...+.+. ..+..++....|+.+..++
T Consensus       300 ----------epVl~ta~~DnSlk~~vfD~~dg~p-----R~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs  363 (910)
T KOG1539|consen  300 ----------EPVLVTAGADNSLKVWVFDSGDGVP-----RLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS  363 (910)
T ss_pred             ----------CceEeeccCCCceeEEEeeCCCCcc-----hheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence                      3478999999999998777551100     00000 11222333444444 5566678888888888877


Q ss_pred             ecccccccc--e---------eeeeeeecccCCceEEEEEeC----CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC-
Q 002782          333 TVEVPEKKM--E---------LILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-  396 (882)
Q Consensus       333 ~~~~~~~~~--~---------~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-  396 (882)
                      +........  .         ........-.-.+|..+++..    ...+.+++.-++...+.|+......-.-.-.+. 
T Consensus       364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~  443 (910)
T KOG1539|consen  364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR  443 (910)
T ss_pred             hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence            655431110  0         000001111224566666643    345677888888899999998765522222222 


Q ss_pred             ---cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee---ecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          397 ---EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       397 ---~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                         ..+.+.++|.++.|+. .+.|...|.|-+|++++|.....+   ..|.++|+.++....++ .+++++.+|.+++||
T Consensus       444 ~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  444 FKKDDINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWD  521 (910)
T ss_pred             ccccCcceEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEe
Confidence               4455555558999997 889999999999999999888877   58999999999988766 799999999999999


Q ss_pred             cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782          471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                      +....           ....-.-+..++++..+....++|++..|-.|.++|..+.+.++.|.||...|++++|||||++
T Consensus       522 f~~k~-----------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW  590 (910)
T KOG1539|consen  522 FKKKV-----------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW  590 (910)
T ss_pred             cCCcc-----------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence            98642           1111123456788888888889999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC-CeEEEEEcC
Q 002782          551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVR  608 (882)
Q Consensus       551 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~iwd~~  608 (882)
                      |++++.|++|++||+.++.++..+. -..+++.+.|+|+|.+|+++..| .-|++|.=+
T Consensus       591 lisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  591 LISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            9999999999999999999998886 56788999999999999999998 579999643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3e-38  Score=323.20  Aligned_cols=577  Identities=17%  Similarity=0.258  Sum_probs=423.8

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCC--eeEEEe
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTL--KCLRSW   98 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~---~las~~~dg~i~iwd~~~~--~~~~~~   98 (882)
                      ...+.| +..+|+|.+..|.+||..+......+.||..+|+|+.+-|+.+   ++++|+.|+.|.+|.++..  ..+.++
T Consensus        19 v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~   97 (764)
T KOG1063|consen   19 VSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI   97 (764)
T ss_pred             cccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence            344544 4478999999999999998888899999999999999999988   8999999999999999843  355667


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCc--EEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGV--VSSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--~~~~~~~h~~~--V~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      .+|...+.|+  ...-....+.+.|+.+.+||.+..+  +.+.++...+.  ..|+++.|+.+..+++.|+.+..|.++.
T Consensus        98 ~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s  175 (764)
T KOG1063|consen   98 QGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS  175 (764)
T ss_pred             cCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence            7766655554  4333333334689999999996655  34444432232  3567777876777888999999999997


Q ss_pred             CCCC--eEEEEecCcccceEEEEEccCCC---EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccc
Q 002782          175 LLAK--KCVATLDKHFSRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS  249 (882)
Q Consensus       175 ~~~~--~~~~~l~~h~~~v~~l~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (882)
                      -.+.  +.+..+.||.+.|.+++|...+.   +|++++.|..|++|.+.-...........   .....++.        
T Consensus       176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~~--------  244 (764)
T KOG1063|consen  176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSNL--------  244 (764)
T ss_pred             cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccCC--------
Confidence            6543  46778899999999999986544   78999999999999975432111000000   00000000        


Q ss_pred             cchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEE
Q 002782          250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL  329 (882)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  329 (882)
                                     +.+.+...   +. +.+             ........+.+-+.++.+.|.+..|++.+.|.++.
T Consensus       245 ---------------~~f~~l~~---i~-~~i-------------s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi  292 (764)
T KOG1063|consen  245 ---------------PVFMILEE---IQ-YRI-------------SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI  292 (764)
T ss_pred             ---------------ceeeeeee---EE-EEE-------------ehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence                           01111100   00 000             00112234557778889999999999999999999


Q ss_pred             EEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---ceeeeeeeCCCcceEEeeeee
Q 002782          330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVLCLDTCA  406 (882)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~  406 (882)
                      +|.................+.|......+.-|++ +++.+++-+..|..++|....   ......+.||.+.|..++  +
T Consensus       293 iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~--W  369 (764)
T KOG1063|consen  293 IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVD--W  369 (764)
T ss_pred             EEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeee--e
Confidence            9998876554444444455556666677888887 567888888889999998332   123345679999999999  9


Q ss_pred             ecCCCEEEEEeecCCeEEEEeCCC----ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC--------
Q 002782          407 LSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL--------  474 (882)
Q Consensus       407 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~--------  474 (882)
                      .|.|.+ +++.+.|.+-|+|-.-.    -..+...+-|...++|+++-+. +..+++|...+.+++|+.+..        
T Consensus       370 ~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i  447 (764)
T KOG1063|consen  370 DPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAI  447 (764)
T ss_pred             cCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHH
Confidence            999997 88899999999986542    2345556679999999999885 336899999999999976321        


Q ss_pred             -----CCC-----------------C----------------CCc-----c---------------cccchhhhhhcCCC
Q 002782          475 -----SDD-----------------A----------------EQP-----M---------------NLKAKAVVAAHGKD  496 (882)
Q Consensus       475 -----~~~-----------------~----------------~~~-----~---------------~~~~~~~~~~~~~~  496 (882)
                           ...                 +                +.+     .               -......+.+|+..
T Consensus       448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE  527 (764)
T KOG1063|consen  448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE  527 (764)
T ss_pred             hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence                 000                 0                000     0               01122335689999


Q ss_pred             eeEEEEcCCCcEEEEEcCCC-----cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce-
Q 002782          497 INSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-  570 (882)
Q Consensus       497 i~~~~~s~~~~~la~~s~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-  570 (882)
                      |.+++.+|+|+++|+++...     .|++|+..+-.....+.+|.-.|+.++|||||++|++.|.|+++.+|....... 
T Consensus       528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~  607 (764)
T KOG1063|consen  528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD  607 (764)
T ss_pred             EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence            99999999999999987654     499999999999999999999999999999999999999999999999754322 


Q ss_pred             ---eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC--eeEEEe--ccCCCceEEEEEcCC-----CCEEEEE
Q 002782          571 ---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIATY--DKHEDKIWALAVGKK-----TEMFATG  638 (882)
Q Consensus       571 ---~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~h~~~v~~l~~s~~-----~~~l~s~  638 (882)
                         ....+.|..-|..+.|+|++.+++|+|.|..|++|....+  +.+..+  ..+...|+++++.|-     +..++.|
T Consensus       608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG  687 (764)
T KOG1063|consen  608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG  687 (764)
T ss_pred             hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence               2336779999999999999999999999999999999887  555442  357889999998762     3367888


Q ss_pred             eCCCCEEEEECCC
Q 002782          639 GSDALVNLWHDST  651 (882)
Q Consensus       639 ~~dg~i~iw~~~~  651 (882)
                      -..|.|.+|+...
T Consensus       688 le~GeI~l~~~~~  700 (764)
T KOG1063|consen  688 LEKGEIVLWRRKR  700 (764)
T ss_pred             ecccEEEEEeccc
Confidence            8999999999764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.3e-37  Score=306.70  Aligned_cols=492  Identities=19%  Similarity=0.270  Sum_probs=368.0

Q ss_pred             cccccccccccccCC-----ceEEccCCCEEEEEeCC---------eEEEEEcCCCceeeeecCCCccEEEEEEcC--CC
Q 002782            9 SYGCEPVLQQFYGGG-----PLVVSSDGSFIACACGE---------SINIVDLSNASIKSTIEGGSDTITALALSP--DD   72 (882)
Q Consensus         9 ~~~~~~~~~~~y~g~-----~va~s~dg~~la~~~~~---------~I~i~d~~~~~~~~~l~~~~~~I~~l~~sp--d~   72 (882)
                      .|..+...|++|.|.     +++++||.-.+++|...         .|+|||..+-..++.+..-...|+|++||+  .|
T Consensus        89 l~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G  168 (626)
T KOG2106|consen   89 LYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG  168 (626)
T ss_pred             EEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC
Confidence            455666788999987     89999999888865432         499999999888888887788999999998  35


Q ss_pred             CEEEEE--eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---eecC-CCc
Q 002782           73 KLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY---FKGH-KGV  146 (882)
Q Consensus        73 ~~las~--~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~---~~~h-~~~  146 (882)
                      .+|+..  +.+..+.+||++.+......+..+..|....|+|.+.-|+.....+.+.+|+++++....+   +.++ ..-
T Consensus       169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~  248 (626)
T KOG2106|consen  169 SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF  248 (626)
T ss_pred             ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence            666654  4567899999999988888888889999999999776555555569999999998876544   3332 356


Q ss_pred             EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782          147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV  226 (882)
Q Consensus       147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  226 (882)
                      |.|++|.++++   +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.. ++|+.|+.|..|| ...+..+..
T Consensus       249 Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~  323 (626)
T KOG2106|consen  249 VLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRET  323 (626)
T ss_pred             EEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecc-ccccccccc
Confidence            99999999987   999999999999999888888777799999999999999964 5599999999999 444333333


Q ss_pred             cCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcc
Q 002782          227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG  306 (882)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (882)
                      ..++....                                                                        
T Consensus       324 elPe~~G~------------------------------------------------------------------------  331 (626)
T KOG2106|consen  324 ELPEQFGP------------------------------------------------------------------------  331 (626)
T ss_pred             cCchhcCC------------------------------------------------------------------------
Confidence            22221110                                                                        


Q ss_pred             eeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc
Q 002782          307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  386 (882)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  386 (882)
                      +..  +.+....+++++..+.|                                                  .-=+++++
T Consensus       332 iRt--v~e~~~di~vGTtrN~i--------------------------------------------------L~Gt~~~~  359 (626)
T KOG2106|consen  332 IRT--VAEGKGDILVGTTRNFI--------------------------------------------------LQGTLENG  359 (626)
T ss_pred             eeE--EecCCCcEEEeeccceE--------------------------------------------------EEeeecCC
Confidence            000  11222223333333332                                                  22222222


Q ss_pred             eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782          387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI  466 (882)
Q Consensus       387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i  466 (882)
                      - .....+|.+....++  ..|+.+. +++++.|+.+++|+  ..++... ..-..+..|+.|+|.|  .++.|+..|..
T Consensus       360 f-~~~v~gh~delwgla--~hps~~q-~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w  430 (626)
T KOG2106|consen  360 F-TLTVQGHGDELWGLA--THPSKNQ-LLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRW  430 (626)
T ss_pred             c-eEEEEecccceeeEE--cCCChhh-eeeccCcceEEEcc--CCceeEE-EEecCceeEeeccCcc--eEEEeeccceE
Confidence            2 225567888888887  7777776 99999999999999  3333322 2345688899999998  69999999999


Q ss_pred             EEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE--ecccCceEEEEE
Q 002782          467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF--RGHKRGIWSVEF  544 (882)
Q Consensus       467 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~  544 (882)
                      .+.|..+..           .........+++++.|+|+|.+||+|+.|+.|+||.+.........  +-|..+|+.+.|
T Consensus       431 ~V~d~e~~~-----------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw  499 (626)
T KOG2106|consen  431 FVLDTETQD-----------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW  499 (626)
T ss_pred             EEEecccce-----------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence            999987531           1222223778999999999999999999999999998765333222  224489999999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCceeeE--------------ee----cCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782          545 SPVDQVVITASGDKTIKIWSISDGSCLKT--------------FE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       545 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------~~----~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      |+|+++|.+-+.|-.|-.|....-..+..              |.    .|...|..++-+.+.+.+++|...|.|++|.
T Consensus       500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~  579 (626)
T KOG2106|consen  500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS  579 (626)
T ss_pred             cCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence            99999999999999999994322111111              11    2444556666677788999999999999998


Q ss_pred             cCCCe---eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          607 VRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       607 ~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      ..--.   ....+.+|.+-|.+++|..+...+++.+.|.+|..|++
T Consensus       580 yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  580 YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            75433   34566789999999999999999999889999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.9e-39  Score=295.25  Aligned_cols=291  Identities=22%  Similarity=0.366  Sum_probs=270.0

Q ss_pred             eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  421 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  421 (882)
                      .+...+.+.||...|.++.|.+ +.+++++++.||.+.|||.-+......++.....|...+  ++|.++. ++.|+-|+
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLdN  119 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLDN  119 (343)
T ss_pred             eeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcCc
Confidence            4455688999999999999988 888999999999999999999988888998888998888  9999997 99999999


Q ss_pred             eEEEEeCCCc------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782          422 SVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  495 (882)
Q Consensus       422 ~i~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  495 (882)
                      ...||++.+.      ...+.+.+|++.+.++.|.+++.  +++++.|.+..+||++++.          ....+.+|.+
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~----------~~~~f~GH~g  187 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQ----------QTQVFHGHTG  187 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccce----------EEEEecCCcc
Confidence            9999999865      45567889999999999999764  9999999999999999764          5667789999


Q ss_pred             CeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782          496 DINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  574 (882)
Q Consensus       496 ~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  574 (882)
                      +|.+++++| +++.+++|+-|+..++||++.+...++|.+|...|.+++|.|+|.-+++|+.|++.|+||++....+..|
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY  267 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             ec--CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          575 EG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       575 ~~--h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      ..  -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+|+++|.++..+|||..++||+.|..++||.
T Consensus       268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            73  235899999999999999999999999999999999999999999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-38  Score=292.16  Aligned_cols=294  Identities=26%  Similarity=0.406  Sum_probs=262.5

Q ss_pred             EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782          137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  216 (882)
Q Consensus       137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd  216 (882)
                      ...++||.+.|.++.|++|.++  +++++.||.+.|||.-+...++.++-....|..++|+|.|+++++||.|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~--ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRR--IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCcCe--EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            3678999999999999998776  99999999999999999998999988999999999999999999999999999998


Q ss_pred             cCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee
Q 002782          217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  296 (882)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~  296 (882)
                      +.+...-                                                                         
T Consensus       126 ls~~d~~-------------------------------------------------------------------------  132 (343)
T KOG0286|consen  126 LSTRDAE-------------------------------------------------------------------------  132 (343)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            7532100                                                                         


Q ss_pred             eeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCC
Q 002782          297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  376 (882)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  376 (882)
                                                                                                     +
T Consensus       133 -------------------------------------------------------------------------------g  133 (343)
T KOG0286|consen  133 -------------------------------------------------------------------------------G  133 (343)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcE
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  456 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~  456 (882)
                      .        -...+.+.+|++.+.|..  |.+ +.. |++++.|.+..+||+++++.+..+.+|.+.|.++.++|...+.
T Consensus       134 ~--------~~v~r~l~gHtgylScC~--f~d-D~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  134 N--------VRVSRELAGHTGYLSCCR--FLD-DNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             c--------ceeeeeecCccceeEEEE--EcC-CCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            0        011225678888888886  555 444 8999999999999999999999999999999999999955568


Q ss_pred             EEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--
Q 002782          457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--  534 (882)
Q Consensus       457 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--  534 (882)
                      +++|+-|+..++||++.+.          ....+.+|..+|+++.|.|+|.-+++|+.|++.++||++....+..+..  
T Consensus       202 FvSg~cD~~aklWD~R~~~----------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~  271 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQ----------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS  271 (343)
T ss_pred             EEecccccceeeeeccCcc----------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence            9999999999999998653          7788899999999999999999999999999999999999988887773  


Q ss_pred             ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782          535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      -..+|++++||..|++|++|..|.++.+||.-.++.+..+.||.+.|.++..+|||.-+++|+.|..++||.
T Consensus       272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            346899999999999999999999999999999999999999999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-39  Score=292.44  Aligned_cols=292  Identities=24%  Similarity=0.375  Sum_probs=258.5

Q ss_pred             eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-----CceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-----SMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                      .+.....+.+|++.|..++..+.+.+.+..++.|..+.+|++.     .|..++.+.||...|..+.  .+++|++ .++
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS   80 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALS   80 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEe
Confidence            3455677889999999999999899999999999999999975     4566889999999999998  8899987 999


Q ss_pred             eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh--hcC
Q 002782          417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHG  494 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~  494 (882)
                      ++.|+++++||+.+++..+.+.+|...|.+++|+++.. .+++|+.|++|++|+.-..           +..+..  .+.
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~  148 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHR  148 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCc
Confidence            99999999999999999999999999999999999977 7999999999999998754           222222  236


Q ss_pred             CCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee
Q 002782          495 KDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  572 (882)
Q Consensus       495 ~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  572 (882)
                      ..|+|+.|+|+  ..+|++++.|++|++||+++.+....+.||...++.+++||||.++++|+.||.+.+||++.++++.
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly  228 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY  228 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence            78999999998  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc----C-----CCceEEEEEcCCCCEEEEEeCCCC
Q 002782          573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDAL  643 (882)
Q Consensus       573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~s~~~~~l~s~~~dg~  643 (882)
                      ++. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..    .     .-...+++|++||..|++|..|+.
T Consensus       229 sl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  229 SLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            887 88999999999986555544 455699999999998877752    2     223467899999999999999999


Q ss_pred             EEEEECC
Q 002782          644 VNLWHDS  650 (882)
Q Consensus       644 i~iw~~~  650 (882)
                      |++|.+.
T Consensus       307 irv~qv~  313 (315)
T KOG0279|consen  307 IRVWQVA  313 (315)
T ss_pred             EEEEEee
Confidence            9999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-37  Score=309.28  Aligned_cols=469  Identities=18%  Similarity=0.261  Sum_probs=355.7

Q ss_pred             ceEEccCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782           24 PLVVSSDGSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        24 ~va~s~dg~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      +|.++|-..++.++- .+.|.|||.+|...++.++-...+|.+..|-+..+++++|+.|..|+||+..+++.+..|.+|.
T Consensus        18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~   97 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS   97 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc
Confidence            699999999877766 5599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~  181 (882)
                      .-|.+++.+|...++.|+|.|-+|++||++.+ .+.++|.||..-|.+++|.|.. ..-+++++-|++|+||.+.+..+.
T Consensus        98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~n  176 (794)
T KOG0276|consen   98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPHPN  176 (794)
T ss_pred             cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCCCc
Confidence            99999999999999999999999999999865 7889999999999999999974 356999999999999999999999


Q ss_pred             EEecCcccceEEEEEccCC--CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcc
Q 002782          182 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK  259 (882)
Q Consensus       182 ~~l~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (882)
                      .++.+|...|.++.|-+.|  .+|++|+.|.++++||..+..++++                                  
T Consensus       177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T----------------------------------  222 (794)
T KOG0276|consen  177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT----------------------------------  222 (794)
T ss_pred             eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH----------------------------------
Confidence            9999999999999998744  6999999999999999987766544                                  


Q ss_pred             ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccc
Q 002782          260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK  339 (882)
Q Consensus       260 ~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~  339 (882)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (794)
T KOG0276|consen  223 --------------------------------------------------------------------------------  222 (794)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec
Q 002782          340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK  419 (882)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  419 (882)
                               +.||...|..+.|.| .-.++++|+.||++++|+..+.+...++.-.-+.+.|+.  ..+.++. ++.|.+
T Consensus       223 ---------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~--~~k~~~~-i~vG~D  289 (794)
T KOG0276|consen  223 ---------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA--AHKGDGK-IAVGFD  289 (794)
T ss_pred             ---------hhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe--ecCCCCe-EEEecc
Confidence                     345666667777766 667999999999999999999998888888889999997  6677776 899998


Q ss_pred             CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee-CCCeEEEEecCCCCC---CCCCcccccchhhhhhcCC
Q 002782          420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD---DAEQPMNLKAKAVVAAHGK  495 (882)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~-~dg~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~  495 (882)
                      +|.|.+ .+....+            .+..++.|+ ++.+.. +=..+.+-.+....+   ...-+...+....   -.-
T Consensus       290 eg~i~v-~lgreeP------------~vsMd~~gK-Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs---~ei  352 (794)
T KOG0276|consen  290 EGSVTV-KLGREEP------------AVSMDSNGK-IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS---VEI  352 (794)
T ss_pred             CCcEEE-EccCCCC------------ceeecCCcc-EEEEcCceeeeeeceeccCcccccCCccccchhhhccc---ccc
Confidence            887755 3322222            223333333 222211 111112211111100   0000111111111   111


Q ss_pred             CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee
Q 002782          496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  575 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  575 (882)
                      ....++.+|+|+++++++ ||.-.||-.-..+     .-+.+.-....|++|.+..++--.++.|+++  ++++..+++.
T Consensus       353 yPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~  424 (794)
T KOG0276|consen  353 YPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR  424 (794)
T ss_pred             chHHhccCCCCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc
Confidence            234678899999888775 7887777532111     1134556778899998888888888999999  7777777765


Q ss_pred             cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          576 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       576 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      ....    +.+.- |..|+....++.+++||-.+++.++.++-..   -.+.|+.+|.+++.++.|. ..+.....+..
T Consensus       425 ~~~~----~e~i~-gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~---k~v~w~d~g~lVai~~d~S-fyil~~n~d~v  494 (794)
T KOG0276|consen  425 PDMS----AEGIF-GGPLLGVRSSDFLCFYDWESGELVRRIEVTS---KHVYWSDNGELVAIAGDDS-FYILKFNADAV  494 (794)
T ss_pred             cccc----eeeec-CCceEEEEeCCeEEEEEcccceEEEEEeecc---ceeEEecCCCEEEEEecCc-eeEEEecHHHH
Confidence            2211    22222 3445555556789999999999999987433   3578999999888887765 56777666544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=292.74  Aligned_cols=332  Identities=21%  Similarity=0.327  Sum_probs=272.0

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~  131 (882)
                      .+..|..|.+.|.+++.+|+.+++|+|+.|..-.+|++.+|.....+.+|+..|+++.||.+|.+||||+-+|.|+||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782          132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV  211 (882)
Q Consensus       132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~  211 (882)
                      .++.....+...-..+.-+.|+|-+  .+|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            9999888887777889999999954  56999999999999999999889999999999999999999999999999999


Q ss_pred             EEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecC
Q 002782          212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  291 (882)
Q Consensus       212 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~  291 (882)
                      |++|+..++++...+...+..                                                           
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~-----------------------------------------------------------  234 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGL-----------------------------------------------------------  234 (399)
T ss_pred             EEEEecCCCceeEEecccccC-----------------------------------------------------------
Confidence            999999887655433211100                                                           


Q ss_pred             CceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE
Q 002782          292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV  371 (882)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  371 (882)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (399)
T KOG0296|consen  235 --------------------------------------------------------------------------------  234 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee--------ccccc
Q 002782          372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA  443 (882)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~  443 (882)
                                                ...++.  +...+.. ++.|+.++.+++-+..+++.+....        .+...
T Consensus       235 --------------------------~~~~~~--~~~~~~~-~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  235 --------------------------ELPCIS--LNLAGST-LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             --------------------------cCCccc--cccccce-eEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence                                      000111  1112222 3444444444444444444333322        34444


Q ss_pred             EEEEEEcc---CCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782          444 VGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  520 (882)
Q Consensus       444 v~~v~~s~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i  520 (882)
                      +.++.+.|   .-+ +.++|+-||+|.+||+...           ..+..-.|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus       286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-----------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-----------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ  352 (399)
T ss_pred             hhhhhhcccccccc-hhhcccccceEEEEecccc-----------hhheeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence            55555444   433 6899999999999998764           3444556889999999998 789999999999999


Q ss_pred             EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ||.++|.+..++.||..+|.+++++|+.++++|+|.|++.+||+..
T Consensus       353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.8e-37  Score=275.45  Aligned_cols=294  Identities=28%  Similarity=0.481  Sum_probs=252.1

Q ss_pred             CccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782          157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC  236 (882)
Q Consensus       157 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  236 (882)
                      ...+|++++.|.+||+|...+|.|..+++...+.|..+.++|+++.|++++. ..|++||+.+...              
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--------------   73 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--------------   73 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--------------
Confidence            4467999999999999999999999999988999999999999999988884 4577777754210              


Q ss_pred             ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782          237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN  316 (882)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (882)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (311)
T KOG0315|consen   74 --------------------------------------------------------------------------------   73 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC
Q 002782          317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS  396 (882)
Q Consensus       317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  396 (882)
                                                                                            ..+..+.+|.
T Consensus        74 ----------------------------------------------------------------------~Pv~t~e~h~   83 (311)
T KOG0315|consen   74 ----------------------------------------------------------------------NPVATFEGHT   83 (311)
T ss_pred             ----------------------------------------------------------------------CceeEEeccC
Confidence                                                                                  1223566787


Q ss_pred             cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782          397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  476 (882)
Q Consensus       397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~  476 (882)
                      ..|+++.  |..+|++ +++|++||+++|||+....+.+.+. |..+|+++..+|+.. -|++|.++|.|++||+....-
T Consensus        84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence            8888887  8888988 9999999999999999966655554 669999999999855 699999999999999976421


Q ss_pred             CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc------eeEEEEecccCceEEEEEcCCCCE
Q 002782          477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                               ...........|.++.+.|||.+++.+...|+.++|++.+.      +++..++.|.+-+..+.+|||+++
T Consensus       159 ---------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  159 ---------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             ---------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence                     11222334468999999999999999999999999998653      566778889999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEc
Q 002782          551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG  629 (882)
Q Consensus       551 l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  629 (882)
                      |+++|.|.+++||+.++. +.-..+.+|...+..++||.||.||++++.|+.+++|++..++.+..+.+|.....|++..
T Consensus       230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999988 6667889999999999999999999999999999999999999999999999888887753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.4e-37  Score=302.71  Aligned_cols=243  Identities=23%  Similarity=0.399  Sum_probs=224.6

Q ss_pred             eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                      ++..|.++|.++.  +...|.+ +++++.|+++.+||..++.....+..|..+-..+.|-.+..  +++++.|+.|+++.
T Consensus       271 tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  271 TLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCK  345 (524)
T ss_pred             hhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEE
Confidence            5567888999998  8888988 99999999999999999999999999998877888877654  89999999999999


Q ss_pred             cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCC--
Q 002782          471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--  548 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~--  548 (882)
                      +....          +..++.+|.++|+++.|.|.|.+|+++|.|++++||..........+.+|...|..+.|+|+|  
T Consensus       346 v~~~~----------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v  415 (524)
T KOG0273|consen  346 VGEDR----------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV  415 (524)
T ss_pred             ecCCC----------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence            87543          566778899999999999999999999999999999999999999999999999999999965  


Q ss_pred             -------CEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC
Q 002782          549 -------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED  621 (882)
Q Consensus       549 -------~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  621 (882)
                             ..+++++.|++|++||+..+.++.+|..|+.+|.+++|+|+|+|+++|+.||.|.+|+.++++.++.+.+ .+
T Consensus       416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~  494 (524)
T KOG0273|consen  416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG  494 (524)
T ss_pred             cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence                   3899999999999999999999999999999999999999999999999999999999999999999974 66


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          622 KIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      .|..++|+.+|..|..+-.|+.+++-|+
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            7999999999999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.3e-37  Score=275.22  Aligned_cols=295  Identities=23%  Similarity=0.451  Sum_probs=251.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe--EEEEecCcccceE
Q 002782          115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT  192 (882)
Q Consensus       115 ~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~v~  192 (882)
                      -+|+++|.|.+|++|...+|.|..+++...+.|..+...|+...  |++++. -.||+||++++.  ++.++.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            47999999999999999999999999988899999999998765  777665 459999999876  6899999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782          193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  272 (882)
Q Consensus       193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (882)
                      ++.|..+|+++++|+.||+++|||++...+.+                                                
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR------------------------------------------------  119 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR------------------------------------------------  119 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccch------------------------------------------------
Confidence            99999999999999999999999987532211                                                


Q ss_pred             CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782          273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  352 (882)
Q Consensus       273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  352 (882)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (311)
T KOG0315|consen  120 --------------------------------------------------------------------------------  119 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                                                             ...|..+|+++.  ..|+... |++|..+|.|++||+....
T Consensus       120 ---------------------------------------~~~~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen  120 ---------------------------------------NYQHNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             ---------------------------------------hccCCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence                                                   112334555554  5566665 8899999999999998876


Q ss_pred             EEeee-ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782          433 CVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  511 (882)
Q Consensus       433 ~~~~~-~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  511 (882)
                      +...+ .....+|.++.+.|+|. +++.+...|...+|++.....    ...+.+...+++|...+..+.+|||+++||+
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~----~s~l~P~~k~~ah~~~il~C~lSPd~k~lat  232 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQT----ASELEPVHKFQAHNGHILRCLLSPDVKYLAT  232 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCc----cccceEhhheecccceEEEEEECCCCcEEEe
Confidence            55543 34557899999999988 789999999999999976422    2234466668899999999999999999999


Q ss_pred             EcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE
Q 002782          512 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  587 (882)
Q Consensus       512 ~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  587 (882)
                      +|.|.+++||+.++. +....+.+|.+.++..+||.||++|+||+.|+++++|++..++.++.+.+|.....+++..
T Consensus       233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999988 7777899999999999999999999999999999999999999999999999888777764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-36  Score=296.98  Aligned_cols=323  Identities=26%  Similarity=0.432  Sum_probs=276.3

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC--CeEE--EEee----------cCCCcEEEEEEecCCCccEEEEEe
Q 002782          101 HDGPAIGMACHPSGG-LLATAGADRKVLVWDVDG--GFCT--HYFK----------GHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus       101 h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~--~~~~--~~~~----------~h~~~V~~l~f~~~~~~~~l~sgs  165 (882)
                      |..+|.+.+|+|-.. .+++|+.|...++|++..  ..+.  ..++          ..+..|++++|+.+|..  |++|+
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG~  254 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATGS  254 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEee
Confidence            999999999999766 899999999999999964  1111  1111          12457999999998765  99999


Q ss_pred             CCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782          166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD  245 (882)
Q Consensus       166 ~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (882)
                      .||.+++|+. .|..+.++..|.++|.++.|+.+|.+|++++.||++.+||..++...+.++.                 
T Consensus       255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-----------------  316 (524)
T KOG0273|consen  255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-----------------  316 (524)
T ss_pred             cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-----------------
Confidence            9999999995 6778889999999999999999999999999999999999876654433221                 


Q ss_pred             cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782          246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD  325 (882)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (882)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (524)
T KOG0273|consen  317 --------------------------------------------------------------------------------  316 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeee
Q 002782          326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC  405 (882)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  405 (882)
                                                                                           |..+...+.  
T Consensus       317 ---------------------------------------------------------------------~s~~~lDVd--  325 (524)
T KOG0273|consen  317 ---------------------------------------------------------------------HSAPALDVD--  325 (524)
T ss_pred             ---------------------------------------------------------------------ccCCccceE--
Confidence                                                                                 111111122  


Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  485 (882)
                      |..+. . +++.+.|+.|+++.+....++.++.+|.+.|.++.|.|.+. +|++++.|+++++|+.....          
T Consensus       326 W~~~~-~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~----------  392 (524)
T KOG0273|consen  326 WQSND-E-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN----------  392 (524)
T ss_pred             EecCc-e-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc----------
Confidence            33333 3 89999999999999999999999999999999999999987 89999999999999976542          


Q ss_pred             chhhhhhcCCCeeEEEEcCCC---------cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782          486 AKAVVAAHGKDINSLAVAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  556 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~---------~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  556 (882)
                      ....+.+|.+.|..+.|+|.|         ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence            666778999999999999954         57999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          557 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       557 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      ||.|.+|++++++..+.+.+ .+.|..++|+.+|.+|..+-.||.+.+-|++
T Consensus       473 dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  473 DGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999984 4569999999999999999999999998875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.6e-36  Score=286.52  Aligned_cols=340  Identities=19%  Similarity=0.289  Sum_probs=281.5

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782           93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV  172 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v  172 (882)
                      ..+.+|..|+.+|.+++.+|+.+++|||+.|..-.+|++.+|.....+.+|...|+++.|+.++..  |+||+.+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEE
Confidence            346778899999999999999999999999999999999999999999999999999999998765  999999999999


Q ss_pred             EECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccch
Q 002782          173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN  252 (882)
Q Consensus       173 wd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (882)
                      |...++.....+...-+.+.-|.|+|.+..|+.|+.||.+.+|.+....                               
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-------------------------------  181 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-------------------------------  181 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-------------------------------
Confidence            9999999988887777889999999999999999999999999875321                               


Q ss_pred             hhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEE
Q 002782          253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT  332 (882)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~  332 (882)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (399)
T KOG0296|consen  182 --------------------------------------------------------------------------------  181 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE
Q 002782          333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI  412 (882)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  412 (882)
                                                                             ..+.+.||..++++=.  +.|+|++
T Consensus       182 -------------------------------------------------------~~kv~~Gh~~~ct~G~--f~pdGKr  204 (399)
T KOG0296|consen  182 -------------------------------------------------------LCKVMSGHNSPCTCGE--FIPDGKR  204 (399)
T ss_pred             -------------------------------------------------------eeeEecCCCCCccccc--ccCCCce
Confidence                                                                   1124556666666666  8899998


Q ss_pred             EEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          413 LIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                       ++++..||+|++||..++.++..... ......++.++..+. .++.|+.++.+++-+..+++......  ........
T Consensus       205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n--~~~~~l~~  280 (399)
T KOG0296|consen  205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNN--GTVPELKP  280 (399)
T ss_pred             -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecC--CCCccccc
Confidence             99999999999999999988877653 344567777777765 68888888888777665442111100  01112222


Q ss_pred             hcCCCeeEEEE---cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC
Q 002782          492 AHGKDINSLAV---APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  568 (882)
Q Consensus       492 ~~~~~i~~~~~---s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  568 (882)
                      .+...+.|+.+   |..=.+.|+|+.||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.||.|+.||.++|
T Consensus       281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence            34444455544   4456789999999999999998877666655 999999999998 889999999999999999999


Q ss_pred             ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       569 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      .++.++.||...|.+++++|++++++|+|.|+..+||++.
T Consensus       359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=295.20  Aligned_cols=291  Identities=28%  Similarity=0.468  Sum_probs=271.3

Q ss_pred             eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782          344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  423 (882)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  423 (882)
                      +....+.|+...|..+.|.| ....+++++.++.|++||..++++...++||.+.+..+.  +...|+. +++++.|-.+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~  174 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSA  174 (406)
T ss_pred             Cchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccch
Confidence            44556778889999999977 778889999999999999999999999999999999998  8888887 9999999999


Q ss_pred             EEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          424 RLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       424 ~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      .+||..+ .+++....+|...|.+++|-|.|. ++++++.|.+|+.|++.++.          +..++.+|...|..++.
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~----------cv~t~~~h~ewvr~v~v  243 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY----------CVKTFPGHSEWVRMVRV  243 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce----------eEEeccCchHhEEEEEe
Confidence            9999987 667778889999999999999986 89999999999999998764          77788899999999999


Q ss_pred             cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC---------------CCEEEEeeCCCcEEEEecCC
Q 002782          503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~d~~i~iwd~~~  567 (882)
                      +.||.++|+++.|.++++|-+.++.+...++.|.-+|.+++|.|.               ++++.+++.|++|++||+.+
T Consensus       244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            999999999999999999999999999999999999999999763               35999999999999999999


Q ss_pred             CceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782          568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  647 (882)
Q Consensus       568 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  647 (882)
                      |.|+.++.||.+.|..++|+|.|+||+|+..|+++++||+++++|..++..|+.-|+++.|..+..+++||+-|..+++|
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EC
Q 002782          648 HD  649 (882)
Q Consensus       648 ~~  649 (882)
                      .-
T Consensus       404 Ec  405 (406)
T KOG0295|consen  404 EC  405 (406)
T ss_pred             ec
Confidence            63

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-34  Score=298.40  Aligned_cols=526  Identities=18%  Similarity=0.279  Sum_probs=366.8

Q ss_pred             eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782           55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG  134 (882)
Q Consensus        55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~  134 (882)
                      .++.-+..|..++|+|...++.++-.+|.|++||..-+.++..|..|.+||..++|+|++.++++||.|..|+||+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            35556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782          135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       135 ~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      +|+.++.||-.-|..+.|++  .+.+++++|+|.+|+||++.+++|+..+.||...|.|..|+|....+++++-|.+|++
T Consensus        84 rclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             eehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence            99999999999999999999  4567999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeeeeecC--cceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782          215 WDLRDYSCKLTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  292 (882)
Q Consensus       215 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~  292 (882)
                      ||+...+.....|.  .+......   ..                        .-+.++                    .
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~---~~------------------------~dLfg~--------------------~  194 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQ---GN------------------------SDLFGQ--------------------T  194 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccc---cc------------------------hhhcCC--------------------c
Confidence            99986654333222  00000000   00                        000011                    1


Q ss_pred             ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782          293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  372 (882)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  372 (882)
                      +..+.+..+.+.+++...+|.|.-..+++++.|..+.+|.....     ..-......||.+.|.++-|.| ..+++++.
T Consensus       195 DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSn  268 (1202)
T KOG0292|consen  195 DAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSN  268 (1202)
T ss_pred             CeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-----cceeehhhhcccCCcceEEecC-ccceeEec
Confidence            22233455677899999999999999999999999999998764     3344567889999999999988 67799999


Q ss_pred             EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-----------------------
Q 002782          373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----------------------  429 (882)
Q Consensus       373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----------------------  429 (882)
                      +.|+.|++||+.....+.+++...+...+++  ..|..+. +++|.+.| +.+|-++                       
T Consensus       269 sEDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~  344 (1202)
T KOG0292|consen  269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRS  344 (1202)
T ss_pred             CCCccEEEEecccccceeeeeccCCeEEEEE--ecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEe
Confidence            9999999999999999999988888888888  7777775 66555444 3344333                       


Q ss_pred             ----CceE--Eeeeec---ccccEEEEEEccCCCcEEEEeeC-CCeEEEEecCCCCCCCCCccc-cc-------------
Q 002782          430 ----SRCC--VGVGTG---HMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMN-LK-------------  485 (882)
Q Consensus       430 ----~~~~--~~~~~~---~~~~v~~v~~s~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~-------------  485 (882)
                          +.+.  +..+..   ...++.++.++|.....+++... .|.-.++.+............ .+             
T Consensus       345 ~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNr  424 (1202)
T KOG0292|consen  345 YDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNR  424 (1202)
T ss_pred             eeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecc
Confidence                2111  111111   12577889999987655555443 355556665543211111000 00             


Q ss_pred             --------chhhhhhcC----------CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC
Q 002782          486 --------AKAVVAAHG----------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  547 (882)
Q Consensus       486 --------~~~~~~~~~----------~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  547 (882)
                              .........          ..+..+-+...|.+|+.  ....|.+||+...+.+..+.  -..|..+.||+|
T Consensus       425 favl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~d  500 (1202)
T KOG0292|consen  425 FAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSND  500 (1202)
T ss_pred             eEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCc
Confidence                    000000000          01122233333444333  23467888888777776665  356778888888


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe--eEEEeccCCCceEE
Q 002782          548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWA  625 (882)
Q Consensus       548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~  625 (882)
                      ..+++.-+. .+|.|.+. .-+.+.++. ..-.|.+-+|..+|-+|.+...  .|+ |-+.+|.  .+.+++   .++.-
T Consensus       501 m~~vAll~K-h~i~i~~k-kL~l~~sih-Etiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd---~~iyi  571 (1202)
T KOG0292|consen  501 MSRVALLSK-HTITIADK-KLELLCSIH-ETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD---KPIYI  571 (1202)
T ss_pred             cchhhhccc-ceEEEEec-chhheecch-heeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc---cceEE
Confidence            877776665 67777774 233333332 2234556677777766655442  122 2223332  233332   23333


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          626 LAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      .+.  .|+.++.-..|+.+.+..+...+-
T Consensus       572 tkv--~gn~V~cl~rd~~~~~~~IDptEy  598 (1202)
T KOG0292|consen  572 TKV--KGNKVFCLNRDGEIECLTIDPTEY  598 (1202)
T ss_pred             EEe--eCCEEEEEecCCCeEEEeechHHH
Confidence            333  577777778888888888776543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-36  Score=273.54  Aligned_cols=286  Identities=20%  Similarity=0.371  Sum_probs=245.4

Q ss_pred             ceEEccCC-CEEEEEeCC-eEEEEEcC-----CCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002782           24 PLVVSSDG-SFIACACGE-SINIVDLS-----NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR   96 (882)
Q Consensus        24 ~va~s~dg-~~la~~~~~-~I~i~d~~-----~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~   96 (882)
                      .++..+.+ ..|..++.+ .+.+|++.     .|..++.+.||+..|+.++.++||++.++++.|+++++||+.+++..+
T Consensus        20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~   99 (315)
T KOG0279|consen   20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR   99 (315)
T ss_pred             EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence            57777765 455555555 79999874     567899999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~  175 (882)
                      .|.+|...|.+++|++|++.+++|+.|.+|++||+.++........ |.+.|+|++|+|+....++++++.|++|++||+
T Consensus       100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl  179 (315)
T KOG0279|consen  100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL  179 (315)
T ss_pred             EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence            9999999999999999999999999999999999987655444443 378999999999977788999999999999999


Q ss_pred             CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782          176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT  255 (882)
Q Consensus       176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (882)
                      .+.+....+.+|.+.++.+++||||..+++|+.||.+.+||++..+.+..+.....+.+++|.|+.              
T Consensus       180 ~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr--------------  245 (315)
T KOG0279|consen  180 RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR--------------  245 (315)
T ss_pred             CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999865              


Q ss_pred             hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782          256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  334 (882)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  334 (882)
                                +.++......|++||.+++........+.... ........-..+++++++..|+++..++.|++|.+.
T Consensus       246 ----------ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  246 ----------YWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ----------eeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                      56677777779999999985544433322211 111122334678899999999999999999999764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-36  Score=317.60  Aligned_cols=247  Identities=30%  Similarity=0.528  Sum_probs=220.5

Q ss_pred             EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782          378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  457 (882)
Q Consensus       378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l  457 (882)
                      +.+.|..+......+.||.++|....  ++|+.+. |++++.|+++|+|.+.+..++..+.+|..+|+.+.|+|.|- ++
T Consensus       433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF  508 (707)
T KOG0263|consen  433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF  508 (707)
T ss_pred             hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence            34445555555667999999999999  9999987 99999999999999999999999999999999999999976 89


Q ss_pred             EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC
Q 002782          458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR  537 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~  537 (882)
                      +|++.|++-++|.....          .+.+++.+|-.+|.|+.|+|+..++|+||.|.+|++||+.+|..++.|.||.+
T Consensus       509 atas~D~tArLWs~d~~----------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~  578 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHN----------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG  578 (707)
T ss_pred             EecCCCceeeeeecccC----------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence            99999999999998753          37888999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe------
Q 002782          538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------  611 (882)
Q Consensus       538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~------  611 (882)
                      +|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..||+||.|.+|++||+..-.      
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~  658 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG  658 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985321      


Q ss_pred             ------------------eEEEeccCCCceEEEEEcCCCCEEEEE
Q 002782          612 ------------------CIATYDKHEDKIWALAVGKKTEMFATG  638 (882)
Q Consensus       612 ------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~  638 (882)
                                        ++.++..-..+|..+.|..-.-.|++|
T Consensus       659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                              444555556678888887655444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=288.77  Aligned_cols=305  Identities=27%  Similarity=0.480  Sum_probs=271.9

Q ss_pred             ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        51 ~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      ...+.+.||..+|+.+-|+|+-..+|+++.|++|++||..+|++.+.++||...|..++|+..|++||+++.|-.+++||
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            45577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       131 ~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      .++ .+++..+.+|...|.+++|-|.++.  +++++.|.+|+.|++.++.|+.++.+|...|..+..+.||..+++++.|
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~--ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDH--ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCe--eeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            977 6677888899999999999998865  9999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCceeeeeecCcc-eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782          210 KVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  288 (882)
Q Consensus       210 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~  288 (882)
                      .+|++|-+.+.++...+...+ +++.+.+.|......                                           
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~-------------------------------------------  293 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS-------------------------------------------  293 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcc-------------------------------------------
Confidence            999999999987776665444 566666665443100                                           


Q ss_pred             ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782          289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  368 (882)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  368 (882)
                                                                                         |....-+.+.+++
T Consensus       294 -------------------------------------------------------------------i~~at~~~~~~~~  306 (406)
T KOG0295|consen  294 -------------------------------------------------------------------ISEATGSTNGGQV  306 (406)
T ss_pred             -------------------------------------------------------------------hhhccCCCCCccE
Confidence                                                                               0000001125678


Q ss_pred             EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782          369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  448 (882)
Q Consensus       369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  448 (882)
                      +.+++.|+.|++||+.++.++.++.+|...|..++  ++|.|++ |+++.+|+++++||+++++++..+..|..-++++.
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a--f~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA--FSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEecccceeeeeE--EcCCCeE-EEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence            99999999999999999999999999999999999  9999988 99999999999999999999999999999999999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEec
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      |..+.. ++++|+-|.++++|..
T Consensus       384 fh~~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCc-eEEeccccceeeeeec
Confidence            998877 8999999999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=292.20  Aligned_cols=407  Identities=20%  Similarity=0.324  Sum_probs=318.3

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~  175 (882)
                      +.+..++..|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|.+  +...+++|++|..|+||++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEecCCceEEEEec
Confidence            44556889999999999999999999999999999999999999999999999999998  4567999999999999999


Q ss_pred             CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782          176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT  255 (882)
Q Consensus       176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (882)
                      ++++.+..+..|...|.+++.+|...++++++.|-.|++||.+.                                    
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~------------------------------------  128 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN------------------------------------  128 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC------------------------------------
Confidence            99999999999999999999999999999999999999999863                                    


Q ss_pred             hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782          256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  335 (882)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  335 (882)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (794)
T KOG0276|consen  129 --------------------------------------------------------------------------------  128 (794)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC-CEEE
Q 002782          336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG-KILI  414 (882)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~l  414 (882)
                            ...+.....||..-|.+++|.|.+.+.+++++-|++|++|++.+..+..++.+|...|.|++  +.+.| +.++
T Consensus       129 ------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd--yy~~gdkpyl  200 (794)
T KOG0276|consen  129 ------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD--YYTGGDKPYL  200 (794)
T ss_pred             ------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE--eccCCCcceE
Confidence                  22234566789999999999999999999999999999999999999999999999999999  55544 3359


Q ss_pred             EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC
Q 002782          415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  494 (882)
Q Consensus       415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  494 (882)
                      ++|++|.++++||.++..|++++.+|...|..++|+|.-+ ++++|++||++++|+..+..          ...++.-..
T Consensus       201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~----------lE~tLn~gl  269 (794)
T KOG0276|consen  201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK----------LEKTLNYGL  269 (794)
T ss_pred             EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee----------hhhhhhcCC
Confidence            9999999999999999999999999999999999999987 89999999999999976543          333444455


Q ss_pred             CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--------c-------------c-----------------
Q 002782          495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------H-------------K-----------------  536 (882)
Q Consensus       495 ~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--------h-------------~-----------------  536 (882)
                      ..+.|++-.+.+..+++|...|.|.+ .+...++..++..        |             .                 
T Consensus       270 eRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLg  348 (794)
T KOG0276|consen  270 ERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELG  348 (794)
T ss_pred             ceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhcc
Confidence            67889998888888888887776544 2222222111110        0             0                 


Q ss_pred             ---CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          537 ---RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       537 ---~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                         --...++-+|+|++++++ .||.-.||..-..+     ..+.+.-....|++|.+..+.-..++.|+++  ++++..
T Consensus       349 s~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~  420 (794)
T KOG0276|consen  349 SVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEH  420 (794)
T ss_pred             ccccchHHhccCCCCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceec
Confidence               012235667888877665 45877777631111     1134555667888887777777778888888  677666


Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       614 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      ..+...-.   +. .--.|. |+....++.+++||-.++.
T Consensus       421 ksi~~~~~---~e-~i~gg~-Llg~~ss~~~~fydW~~~~  455 (794)
T KOG0276|consen  421 KSIRPDMS---AE-GIFGGP-LLGVRSSDFLCFYDWESGE  455 (794)
T ss_pred             cccccccc---ee-eecCCc-eEEEEeCCeEEEEEcccce
Confidence            65542111   11 111333 4444445557777755543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-37  Score=291.66  Aligned_cols=277  Identities=28%  Similarity=0.562  Sum_probs=250.7

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                      ...|.++.|   ++..+++|..|++|.+||..+..+.+.+.||++.|.|+.  +  +.+ ++++|+.|.+|++||.++++
T Consensus       197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--y--d~r-viisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--Y--DER-VIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--c--cce-EEEecCCCceEEEEeccCCc
Confidence            355677776   778999999999999999999999999999999999998  2  333 59999999999999999999


Q ss_pred             EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                      ++.++-.|...|..+.|+..   ++++++.|.++.+||+....       .......+.+|...|+.+.|+  .++++++
T Consensus       269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA  336 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA  336 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence            99999999999999999865   89999999999999998653       344778889999999999996  4599999


Q ss_pred             cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCE
Q 002782          513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ  592 (882)
Q Consensus       513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~  592 (882)
                      +.|.+|++|++.+++.+.++.+|..+|-|+.+.  |+++++|+.|.+|++||+..|.|++.++||..-|.++.|.  .+.
T Consensus       337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr  412 (499)
T KOG0281|consen  337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR  412 (499)
T ss_pred             cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence            999999999999999999999999999999886  9999999999999999999999999999999999999995  679


Q ss_pred             EEEeecCCeEEEEEcCCCe---------eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH
Q 002782          593 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  655 (882)
Q Consensus       593 l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  655 (882)
                      +++|+.||.|++||+..+.         |+.++..|.+.|..+.|  |...+++++.|.+|.|||...+...
T Consensus       413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999999998764         55666779999999999  7888999999999999999876543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-37  Score=295.12  Aligned_cols=285  Identities=24%  Similarity=0.432  Sum_probs=257.3

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                      .-.|..+.|.| +++.|++|+..|.+.+|+..+......++.|..+|.++.  +++++.+ +++|+.+|.|++|+.+-..
T Consensus        96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchhh
Confidence            35678888887 788999999999999999988777778899999999999  9999998 9999999999999987665


Q ss_pred             EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                      .......|...|++++|+|+.. .+++++.||+|++||.....          ....+.+|+-.|.+++|+|...++|+|
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k----------ee~vL~GHgwdVksvdWHP~kgLiasg  240 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK----------EERVLRGHGWDVKSVDWHPTKGLIASG  240 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc----------hhheeccCCCCcceeccCCccceeEEc
Confidence            5544455669999999999765 79999999999999987543          555668999999999999999999999


Q ss_pred             cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEe-CCC
Q 002782          513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT-RGA  591 (882)
Q Consensus       513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~g~  591 (882)
                      +.|..|++||.+++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++-+.+.++++|...|+++.|+| ...
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES  320 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 456


Q ss_pred             EEEEeecCCeEEEEEcCCCeeEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          592 QIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       592 ~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      .|.+|+.||.|..|.+...+++..+ .+|...||+++|+|=|..|++|+.|.++++|....+
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            7889999999999999866666555 479999999999999999999999999999986654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-36  Score=316.89  Aligned_cols=274  Identities=28%  Similarity=0.467  Sum_probs=240.7

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                      ...+.|..|++ +..++|.|..|..|++|.+...+.. .+++..            .-.. +-+++.|-.+.+.|.....
T Consensus       378 ~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~------------~l~~-~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  378 YQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS------------DLSN-IDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchh------------hhcc-ccccccchhhhhccccCCc
Confidence            34556666665 6679999999999999998765322 222111            0011 3334445557777888777


Q ss_pred             EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                      ....+.+|.++|..+.|+|+.+ +|+++++|+++++|.+.+..          ......+|..+|..+.|+|.|-++|++
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s----------~~V~y~GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWS----------CLVIYKGHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             eeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccce----------eEEEecCCCcceeeEEecCCceEEEec
Confidence            7788999999999999999966 99999999999999998653          666677999999999999999999999


Q ss_pred             cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCE
Q 002782          513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ  592 (882)
Q Consensus       513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~  592 (882)
                      +.|++.++|......+.+.+.+|...|.|+.|+|+..++++||.|.+||+||+.+|..++.|.||.++|.+++|||+|++
T Consensus       512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       593 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      |++|+.||.|++||+.+|..+..+.+|.+.|.++.||.||..||+||.|.+|++||+...
T Consensus       592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999999999999999999999998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-34  Score=267.17  Aligned_cols=288  Identities=23%  Similarity=0.394  Sum_probs=260.2

Q ss_pred             eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-CceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      .+...+.||.++|..+.|.| ++..|++|+.|..|.+|+.. ..+....+.+|.+.|..+.  +.+++.. +++++.|.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCce
Confidence            44567789999999999999 99999999999999999954 4555667889999999999  8899998 999999999


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      ++.||.++|+++...++|..-|.++..+.-|..++.+++.|+++++||++...           ..........++++.|
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----------~~~t~~~kyqltAv~f  182 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----------AIKTFENKYQLTAVGF  182 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----------hhhccccceeEEEEEe
Confidence            99999999999999999999999999887888889999999999999998542           1111223557899999


Q ss_pred             cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC----CceeeEeecCc
Q 002782          503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHT  578 (882)
Q Consensus       503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~  578 (882)
                      ...+..+.+|+-|+.|++||++......++.||..+|+.+..+|+|.++.+-+.|.++++||++.    .+|+..+.+|.
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI  262 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence            99999999999999999999999999999999999999999999999999999999999999875    46788888865


Q ss_pred             C----CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEE
Q 002782          579 S----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  646 (882)
Q Consensus       579 ~----~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  646 (882)
                      .    ....++|+|+++.+-.|+.|..+++||......+..+.+|.+.|.+++|+|....|.+++.|.+|.+
T Consensus       263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            3    4577899999999999999999999999888999999999999999999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.9e-35  Score=274.58  Aligned_cols=291  Identities=27%  Similarity=0.448  Sum_probs=250.3

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~  131 (882)
                      ..+.+.||.+.|.|+++.|.+.++++|+.|++++|||+.+|++..++.||...|..+++|+-..||++++.|+.|+.||+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782          132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV  211 (882)
Q Consensus       132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~  211 (882)
                      +..+.++.+.||-+.|.|++.+|.-+.  |++|+.|.+++|||+.+...+..+.+|.++|.++.+.|....+++|+.|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldv--l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDV--LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEecccccee--EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            999999999999999999999997554  999999999999999999999999999999999999998899999999999


Q ss_pred             EEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecC
Q 002782          212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  291 (882)
Q Consensus       212 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~  291 (882)
                      |++||+..++...++.                                                                
T Consensus       301 vrlWDl~agkt~~tlt----------------------------------------------------------------  316 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLT----------------------------------------------------------------  316 (460)
T ss_pred             EEEeeeccCceeEeee----------------------------------------------------------------
Confidence            9999998665433221                                                                


Q ss_pred             CceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE
Q 002782          292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV  371 (882)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  371 (882)
                                                                                 .|...+.+++..| ....+|+
T Consensus       317 -----------------------------------------------------------~hkksvral~lhP-~e~~fAS  336 (460)
T KOG0285|consen  317 -----------------------------------------------------------HHKKSVRALCLHP-KENLFAS  336 (460)
T ss_pred             -----------------------------------------------------------cccceeeEEecCC-chhhhhc
Confidence                                                                       1223344444443 4445555


Q ss_pred             EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee--------ccccc
Q 002782          372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA  443 (882)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~  443 (882)
                      ++. ..|+-|++..+.....+.+|...+.+++  ...++  ++++|+++|.+.+||..++...+...        .....
T Consensus       337 as~-dnik~w~~p~g~f~~nlsgh~~iintl~--~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag  411 (460)
T KOG0285|consen  337 ASP-DNIKQWKLPEGEFLQNLSGHNAIINTLS--VNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG  411 (460)
T ss_pred             cCC-ccceeccCCccchhhccccccceeeeee--eccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence            555 5789999999999889999999999997  55555  38999999999999999986655442        13457


Q ss_pred             EEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      |.+.+|...+. .|++|..|++|++|.-+..
T Consensus       412 I~as~fDktg~-rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  412 IFASCFDKTGS-RLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eeEEeecccCc-eEEeccCCcceEEEecccc
Confidence            88999998877 6999999999999986543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.2e-32  Score=282.21  Aligned_cols=539  Identities=18%  Similarity=0.262  Sum_probs=390.2

Q ss_pred             ceEEccCCC---EEEEEeCC-eEEEEEcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eE
Q 002782           24 PLVVSSDGS---FIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CL   95 (882)
Q Consensus        24 ~va~s~dg~---~la~~~~~-~I~i~d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~--~~   95 (882)
                      ++.+-|+.+   ++++|..+ .|.+|.++...  .+..+++|...  +++++.......+...|+.+.+||.+..+  +.
T Consensus        59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~  136 (764)
T KOG1063|consen   59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLL  136 (764)
T ss_pred             EEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeee
Confidence            666777777   66666655 89999998433  45667776555  44554444444444689999999996555  33


Q ss_pred             EEeecCCCC--EEEEEEcCC-CC-EEEEEeCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEecCCC-ccEEEEEeCCC
Q 002782           96 RSWKGHDGP--AIGMACHPS-GG-LLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDA  168 (882)
Q Consensus        96 ~~~~~h~~~--V~~l~fs~~-~~-~lasg~~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~f~~~~~-~~~l~sgs~dg  168 (882)
                      ..++--.+.  -.|+++.|+ +. ++|.|+.+..|.++.-..+  .....+.||...|.+++|...+. ..+|+++|.|.
T Consensus       137 ~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~  216 (764)
T KOG1063|consen  137 AVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR  216 (764)
T ss_pred             hheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce
Confidence            333322222  345666663 33 4566777777888766543  45677889999999999976655 78899999999


Q ss_pred             cEEEEECCCCe---------------------EEE----------EecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          169 TVRVWDLLAKK---------------------CVA----------TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       169 ~I~vwd~~~~~---------------------~~~----------~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                      .||+|.+.-+.                     +..          .+.||.+.|.++.|+|.+..|++++.|+++.+|.-
T Consensus       217 yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~p  296 (764)
T KOG1063|consen  217 YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKP  296 (764)
T ss_pred             EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEec
Confidence            99999774221                     111          23489999999999999999999999999999986


Q ss_pred             CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782          218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS  297 (882)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~  297 (882)
                      .+..-+..-                                        .+..|                          
T Consensus       297 d~~tGiWv~----------------------------------------~vRlG--------------------------  310 (764)
T KOG1063|consen  297 DENTGIWVD----------------------------------------VVRLG--------------------------  310 (764)
T ss_pred             CCccceEEE----------------------------------------EEEee--------------------------
Confidence            543211100                                        00000                          


Q ss_pred             eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782          298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ  377 (882)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  377 (882)
                       +......++....++|+++.+++-+..|..++|...    ..........+.||-+.|.++.|.| .+.++++.+.|.+
T Consensus       311 -e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~----d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQT  384 (764)
T KOG1063|consen  311 -EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK----DKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQT  384 (764)
T ss_pred             -cccccccceeeEEEcCCCCEEEEecccCcEEEEecc----CccceeeccccccccccceeeeecC-CCCEEEEeccccc
Confidence             011223567788888999889999999999999822    1224455667889999999999998 5668999999999


Q ss_pred             EEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-----------------------
Q 002782          378 VQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----------------------  430 (882)
Q Consensus       378 i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------------------  430 (882)
                      -++|-.-.    .-.+...+-|.....|++  +.+. +..+++|.+...+|+|+...                       
T Consensus       385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~--~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g  461 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEIARPQIHGYDLTCLS--FVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG  461 (764)
T ss_pred             eeeecccccccceeeecccccccccceeee--hccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence            99987551    122334556888899997  5554 34499999999999995221                       


Q ss_pred             --------------------ceE----E-----------------------------eeeecccccEEEEEEccCCCcEE
Q 002782          431 --------------------RCC----V-----------------------------GVGTGHMGAVGAVAFSKKLQNFL  457 (882)
Q Consensus       431 --------------------~~~----~-----------------------------~~~~~~~~~v~~v~~s~~~~~~l  457 (882)
                                          |..    .                             ..+.+|...|.+++.+|+++ ++
T Consensus       462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-li  540 (764)
T KOG1063|consen  462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LI  540 (764)
T ss_pred             cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EE
Confidence                                000    0                             01227888999999999977 88


Q ss_pred             EEeeCC-----CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce----e
Q 002782          458 VSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV----S  528 (882)
Q Consensus       458 ~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~----~  528 (882)
                      ++++..     ..|++|+...-          .....+..|.-.|+.++|||||++|++.+.|+++.+|......    .
T Consensus       541 ASaCKS~~~ehAvI~lw~t~~W----------~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~  610 (764)
T KOG1063|consen  541 ASACKSSLKEHAVIRLWNTANW----------LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR  610 (764)
T ss_pred             eehhhhCCccceEEEEEeccch----------hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence            888754     45889997643          3455678899999999999999999999999999999875431    2


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeE--eecCcCCEEEEEEEeC-----CCEEEEeecC
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKT--FEGHTSSVLRASFLTR-----GAQIVSCGAD  599 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~--~~~h~~~v~~~~~s~~-----g~~l~s~~~d  599 (882)
                      ....+.|..-|++..|+|++.+++|+|.|.+|++|...+.  +++..  ...+..+|+.+++.|-     +..++.|-..
T Consensus       611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~  690 (764)
T KOG1063|consen  611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK  690 (764)
T ss_pred             hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence            2336789999999999999999999999999999999887  54443  3347889999999762     2356778889


Q ss_pred             CeEEEEEcCC-------Ce-----eEEEeccCCCceEEEEEcCC----------CCEEEEEeCCCCEEEEECC
Q 002782          600 GLVKLWTVRT-------GE-----CIATYDKHEDKIWALAVGKK----------TEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       600 g~i~iwd~~~-------~~-----~~~~~~~h~~~v~~l~~s~~----------~~~l~s~~~dg~i~iw~~~  650 (882)
                      |.|.+|..+.       +.     ......+|.+.|..+.|+|.          ...|++|+.|..++++++.
T Consensus       691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            9999999651       11     11122357788999999975          2357999999999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.1e-32  Score=266.76  Aligned_cols=478  Identities=16%  Similarity=0.212  Sum_probs=355.9

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCeeE
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSR--------EIRVWDLSTLKCL   95 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg--------~i~iwd~~~~~~~   95 (882)
                      ++-+-|.|..++. ....+.+++.+... .+.+.||+..|.|++++||.-.+|+|-..|        .+++||..+...+
T Consensus        70 Nly~lptgE~vyf-vA~V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL  147 (626)
T KOG2106|consen   70 NLYLLPTGELVYF-VAAVGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL  147 (626)
T ss_pred             eeEEccCccEEEE-eccEEEEEeehhhh-cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceee
Confidence            5667788866544 34566777775533 355678999999999999998888774433        6999999888888


Q ss_pred             EEeecCCCCEEEEEEcC--CCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEE
Q 002782           96 RSWKGHDGPAIGMACHP--SGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR  171 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~--~~~~lasg~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~  171 (882)
                      ..+..-...|.|++||+  .|.+|+...  .+..+.|||+..+......+..+..|....|+|.+..  ++.....|.+.
T Consensus       148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n--liit~Gk~H~~  225 (626)
T KOG2106|consen  148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN--LIITCGKGHLY  225 (626)
T ss_pred             eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc--EEEEeCCceEE
Confidence            88887788999999998  445666543  4567999999999888888888899999999998664  44555567899


Q ss_pred             EEECCCCeEEEE---ecCc-ccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccc
Q 002782          172 VWDLLAKKCVAT---LDKH-FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF  247 (882)
Q Consensus       172 vwd~~~~~~~~~---l~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (882)
                      +|+++.+.....   +..+ ...|.+++|.++|. +++|..+|.|.+|+..+.+..++                      
T Consensus       226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~----------------------  282 (626)
T KOG2106|consen  226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ----------------------  282 (626)
T ss_pred             EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE----------------------
Confidence            999998876543   3332 25799999999986 67999999999998754332211                      


Q ss_pred             cccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782          248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ  327 (882)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  327 (882)
                                                                                                      
T Consensus       283 --------------------------------------------------------------------------------  282 (626)
T KOG2106|consen  283 --------------------------------------------------------------------------------  282 (626)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeee
Q 002782          328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCA  406 (882)
Q Consensus       328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~  406 (882)
                                           ...|++.|.+++... ++.+ ++|+.|..|..||-.-. .....++...+++..+.   
T Consensus       283 ---------------------~~aH~ggv~~L~~lr-~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~---  336 (626)
T KOG2106|consen  283 ---------------------VHAHDGGVFSLCMLR-DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA---  336 (626)
T ss_pred             ---------------------eeecCCceEEEEEec-CccE-eecCccceEEeccccccccccccCchhcCCeeEEe---
Confidence                                 113555666666654 4444 44889999999993211 12224556677787775   


Q ss_pred             ecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccc
Q 002782          407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA  486 (882)
Q Consensus       407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  486 (882)
                       +.+.- ++.|...+.|..=.++++-.+ ...+|....+.++.+|+.. .+++++.|+.+++|+-.             .
T Consensus       337 -e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~-------------k  399 (626)
T KOG2106|consen  337 -EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDH-------------K  399 (626)
T ss_pred             -cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChh-heeeccCcceEEEccCC-------------c
Confidence             33333 777777777766666665443 3457888999999999866 79999999999999921             1


Q ss_pred             hhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       487 ~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ..-......+..|+.|+|.| .+|.|+..|...+.|.++...+. +.....+++++.|+|+|.+||.|+.|+.|++|.+.
T Consensus       400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            11122345678999999999 99999999999999999955544 44448999999999999999999999999999987


Q ss_pred             CCce-eeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC--------------eeEEEe----ccCCCceEEE
Q 002782          567 DGSC-LKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--------------ECIATY----DKHEDKIWAL  626 (882)
Q Consensus       567 ~~~~-~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~--------------~~~~~~----~~h~~~v~~l  626 (882)
                      .+.. .... ..|..+|+.+.||+|+++|.+-+.|-.|-.|....-              .|.--|    -.|...|.++
T Consensus       478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~  557 (626)
T KOG2106|consen  478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV  557 (626)
T ss_pred             CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence            6533 2222 224489999999999999999999999999943211              111111    1355677788


Q ss_pred             EEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          627 AVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       627 ~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      +-+.+++++++|.+.|.|++|...--+
T Consensus       558 ~rs~~~~~lA~gdd~g~v~lf~yPc~s  584 (626)
T KOG2106|consen  558 ARSHCEKLLASGDDFGKVHLFSYPCSS  584 (626)
T ss_pred             hhhhhhhhhhccccCceEEEEccccCC
Confidence            888899999999999999999876543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.6e-35  Score=279.72  Aligned_cols=294  Identities=23%  Similarity=0.361  Sum_probs=244.4

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV  128 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v  128 (882)
                      ..+.+..|.+.|.-+.||++|+|||+++.|.+..+|++...   +..+++.+|..+|..+.||||.++|++++.|..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            34667889999999999999999999999999999987543   457889999999999999999999999999999999


Q ss_pred             EECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcc-cceEEEEEccCCCEEEEE
Q 002782          129 WDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISA  206 (882)
Q Consensus       129 wd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~v~~l~~s~~~~~l~s~  206 (882)
                      ||+.+|.+.+.+. +|...+.+++|.||+.+  +++|+.|+.|..||+... .....++-. ..|.+++.++||+++++.
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~--~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR--FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCce--eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEE
Confidence            9999999887775 45678999999999887  999999999999998543 344444433 469999999999999999


Q ss_pred             eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782          207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  286 (882)
Q Consensus       207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~  286 (882)
                      +.|..|++++..+......+...                                                         
T Consensus       373 ~~d~~i~l~~~e~~~dr~lise~---------------------------------------------------------  395 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDRGLISEE---------------------------------------------------------  395 (519)
T ss_pred             ecccceeeechhhhhhhcccccc---------------------------------------------------------
Confidence            99999999998654332211111                                                         


Q ss_pred             eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782          287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  366 (882)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (882)
                                                                                         .+|.+...+ .++
T Consensus       396 -------------------------------------------------------------------~~its~~iS-~d~  407 (519)
T KOG0293|consen  396 -------------------------------------------------------------------QPITSFSIS-KDG  407 (519)
T ss_pred             -------------------------------------------------------------------CceeEEEEc-CCC
Confidence                                                                               122222222 245


Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  446 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  446 (882)
                      +++.+.-.+..+.+||++....++.+.||...-.-+..||--.+..++++|+.|+.|+||+..+++++.++.+|...|.+
T Consensus       408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc  487 (519)
T KOG0293|consen  408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC  487 (519)
T ss_pred             cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence            55555566678888888888888888999888777777777666667999999999999999999999999999999999


Q ss_pred             EEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVWSFDG  473 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~wd~~~  473 (882)
                      ++|+|..+.++|+++.||+|++|....
T Consensus       488 VswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  488 VSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999999999998653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.7e-33  Score=253.29  Aligned_cols=295  Identities=24%  Similarity=0.453  Sum_probs=245.6

Q ss_pred             eeeeecCCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CeeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 002782           52 IKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST---LKCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKV  126 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd-~~~las~~~dg~i~iwd~~~---~~~~~~~-~~h~~~V~~l~fs~~~~~lasg~~dg~v  126 (882)
                      .++.+++|.+.|..+||+|- |..||+++.|..|++|+...   ..+...+ .+|+..|.+++|+|.|++||+|+.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            45788999999999999998 89999999999999999984   3444444 4699999999999999999999999999


Q ss_pred             EEEECCCC--eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC---CeEEEEecCcccceEEEEEccCCC
Q 002782          127 LVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---KKCVATLDKHFSRVTSMAITSDGS  201 (882)
Q Consensus       127 ~vwd~~~~--~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~---~~~~~~l~~h~~~v~~l~~s~~~~  201 (882)
                      .||.-..+  +++..+.||...|.+++|+++|..  ||+++.|..|-||....   -.+...++.|...|..+.|+|...
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            99987654  688999999999999999998765  99999999999999874   358889999999999999999999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782          202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA  281 (882)
Q Consensus       202 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~  281 (882)
                      +|++++.|++|++|+-...                                                             
T Consensus       164 lL~S~SYDnTIk~~~~~~d-------------------------------------------------------------  182 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDD-------------------------------------------------------------  182 (312)
T ss_pred             eeEEeccCCeEEEEeecCC-------------------------------------------------------------
Confidence            9999999999999974310                                                             


Q ss_pred             CCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEE
Q 002782          282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF  361 (882)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (882)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (312)
T KOG0645|consen  183 --------------------------------------------------------------------------------  182 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc
Q 002782          362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM  441 (882)
Q Consensus       362 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  441 (882)
                                            ....+..++.+|...|.+++  |.+.|.. +++++.|++++||...+.    ....|.
T Consensus       183 ----------------------ddW~c~~tl~g~~~TVW~~~--F~~~G~r-l~s~sdD~tv~Iw~~~~~----~~~~~s  233 (312)
T KOG0645|consen  183 ----------------------DDWECVQTLDGHENTVWSLA--FDNIGSR-LVSCSDDGTVSIWRLYTD----LSGMHS  233 (312)
T ss_pred             ----------------------CCeeEEEEecCccceEEEEE--ecCCCce-EEEecCCcceEeeeeccC----cchhcc
Confidence                                  11234457778888888888  8898987 999999999999986532    123577


Q ss_pred             ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEE
Q 002782          442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACV  520 (882)
Q Consensus       442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~i  520 (882)
                      ..+..++|. ++  .+++++.|+.|++|.-.....   .+.-.........|+..|++++|.|. ..+|++|+.||.|++
T Consensus       234 r~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d---~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  234 RALYDVPWD-NG--VIASGGGDDAIRLFKESDSPD---EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             cceEeeeec-cc--ceEeccCCCEEEEEEecCCCC---CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence            899999998 43  699999999999998663211   11111123345679999999999994 789999999999999


Q ss_pred             EeCC
Q 002782          521 WRLP  524 (882)
Q Consensus       521 wd~~  524 (882)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.3e-31  Score=270.78  Aligned_cols=536  Identities=16%  Similarity=0.141  Sum_probs=374.3

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCc-eeeeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG  100 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~-~~~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~  100 (882)
                      ++|+|.+.+.||++-.+ .|.||++..+- +...+.|+ ...|.+++|++ +..|.+.+-+|.|.-||+.++++......
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~  108 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS  108 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC
Confidence            89999999999988765 89999998764 44666666 45799999995 55688999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK  178 (882)
Q Consensus       101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~--~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~  178 (882)
                      ..++|.+++.+|.+..++.|+.||.+..++...+...+.  |....++|.++.|+|++..  +++|+.||.|++||..++
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEecccCceEEEEEcCCC
Confidence            999999999999999999999999888888888776543  3345689999999998876  999999999999999998


Q ss_pred             eEEEEec-------C-cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccccc
Q 002782          179 KCVATLD-------K-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS  250 (882)
Q Consensus       179 ~~~~~l~-------~-h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (882)
                      ..+....       . ..--|+++.|-.++ .+++|...|.|.+||...+..++.+...                     
T Consensus       187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h---------------------  244 (691)
T KOG2048|consen  187 QTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH---------------------  244 (691)
T ss_pred             ceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh---------------------
Confidence            8766221       1 22357777777554 6788888888888887766655443322                     


Q ss_pred             chhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEE
Q 002782          251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL  330 (882)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  330 (882)
                                                                           ...+.+++..++++.+++.+.|+.+..
T Consensus       245 -----------------------------------------------------~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  245 -----------------------------------------------------DADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             -----------------------------------------------------hcceeEEEEcCCCCeEEEccCCCceEE
Confidence                                                                 134556666677778888888888888


Q ss_pred             EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCc-ceEEeeeeeecC
Q 002782          331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE-IVLCLDTCALSS  409 (882)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~  409 (882)
                      |...+...   +.........|...+.+++..+.   .++.|+.|..+.+-.....+...-. .+.. +-.+..  ....
T Consensus       272 ~~~~~~~~---~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v--~~a~  342 (691)
T KOG2048|consen  272 YSLTTNKS---EWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRV--SVAP  342 (691)
T ss_pred             EEecCCcc---ceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhh-cccccccccee--ecCc
Confidence            87776543   24445566678888999998764   8888888888887665442211111 0100 000110  1112


Q ss_pred             CCEEEEEeecCCeEEEEeCCCce---------EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCC
Q 002782          410 GKILIVTGSKDNSVRLWDSESRC---------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ  480 (882)
Q Consensus       410 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  480 (882)
                      .++ +..--.+..+.+|.+.+..         +..........|.+.+.+|+|+ + ++-+.=..+++|.+....     
T Consensus       343 ~~~-L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~-~-Ia~st~~~~~iy~L~~~~-----  414 (691)
T KOG2048|consen  343 ENR-LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN-L-IAISTVSRTKIYRLQPDP-----  414 (691)
T ss_pred             cce-EEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC-E-EEEeeccceEEEEeccCc-----
Confidence            222 3333445566677665541         1222233456799999999998 3 444444567888876432     


Q ss_pred             cccccchhhhhhcCCCeeEEEEcCCCcEEEEEc-CCCcEEEEeCCCc--eeEEEEe--cccCceEEEEEcCCCCEEEEee
Q 002782          481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL--VSVVTFR--GHKRGIWSVEFSPVDQVVITAS  555 (882)
Q Consensus       481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s-~dg~i~iwd~~~~--~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~  555 (882)
                      ..............-+...+.|+-|++.++.++ .+..+.++++.+.  +.+..+.  +...+|..+..||+|++||+.+
T Consensus       415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~  494 (691)
T KOG2048|consen  415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS  494 (691)
T ss_pred             ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence            111112222222334567888998888888777 6677888877654  2222222  2456799999999999999999


Q ss_pred             CCCcEEEEecCCCceeeEeecCcCCEEEEEEE-eCCCEEEEeecCCeEEEEEcCCCee-----------EEEeccCCCce
Q 002782          556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFL-TRGAQIVSCGADGLVKLWTVRTGEC-----------IATYDKHEDKI  623 (882)
Q Consensus       556 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v  623 (882)
                      .+|.|.+|++.+++.......-...++.++|+ ++.+.|+.+..|+.+.-||+...+.           -.........+
T Consensus       495 t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~  574 (691)
T KOG2048|consen  495 TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGI  574 (691)
T ss_pred             ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCC
Confidence            99999999999887655554455889999999 4667899999999999999842211           11112234677


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          624 WALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      ..+.|+|..+..+..-+.+-+.+.|..-.-.
T Consensus       575 ~gisfd~~n~s~~~~~~a~w~~~id~~~~lp  605 (691)
T KOG2048|consen  575 PGISFDPKNSSRFIVYDAHWSCLIDFSLPLP  605 (691)
T ss_pred             ceEEeCCCCccEEEEEcCcEEEEEecCCCCC
Confidence            8888887766555555556667766654433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=283.93  Aligned_cols=284  Identities=25%  Similarity=0.411  Sum_probs=247.2

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY  139 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~  139 (882)
                      .-+|..+.|.|+|+.|++|+..|.+.+|+..+...-..+..|+.+|.+|.|+++|.++++|+.+|.|++|+..-......
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            45799999999999999999999999999865554455678999999999999999999999999999999865543333


Q ss_pred             eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782          140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       140 ~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~  219 (882)
                      ...|...|.+++|+|++..  ++++++||+|+|||....+.-..+.+|.-.|.++.|+|....++++|.|..|++||.++
T Consensus       176 ~ahh~eaIRdlafSpnDsk--F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSK--FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hHhhhhhhheeccCCCCce--eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            3345599999999997665  99999999999999999998889999999999999999999999999998888887654


Q ss_pred             ceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeec
Q 002782          220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE  299 (882)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~  299 (882)
                      ++                                                                              
T Consensus       254 g~------------------------------------------------------------------------------  255 (464)
T KOG0284|consen  254 GS------------------------------------------------------------------------------  255 (464)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            43                                                                              


Q ss_pred             cCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEE
Q 002782          300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  379 (882)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  379 (882)
                                                                                                      
T Consensus       256 --------------------------------------------------------------------------------  255 (464)
T KOG0284|consen  256 --------------------------------------------------------------------------------  255 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEE
Q 002782          380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS  459 (882)
Q Consensus       380 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s  459 (882)
                              |+.++.+|...|..+.  |.+++++ |++++.|..++++|+.+.+.+..+++|...++++.|+|-...+|.+
T Consensus       256 --------cl~tlh~HKntVl~~~--f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  256 --------CLATLHGHKNTVLAVK--FNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             --------hhhhhhhccceEEEEE--EcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence                    3335666777888887  8888876 9999999999999999988899999999999999999998889999


Q ss_pred             eeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       460 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      |+.||.|..|.+....+         ....-.+|...|.+++|+|-|.+||+|+.|.++++|.-
T Consensus       325 gg~Dgsvvh~~v~~~~p---------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLEEP---------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccCCCceEEEecccccc---------ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            99999999999873321         33445789999999999999999999999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-34  Score=269.53  Aligned_cols=292  Identities=24%  Similarity=0.431  Sum_probs=267.1

Q ss_pred             eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  421 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  421 (882)
                      .....+.+.||.+.|.++++-| .+.+|++|+.|+.+.|||+.+++...++.||...+..++  +++...+ +++++.|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHpY-lFs~gedk  215 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHPY-LFSAGEDK  215 (460)
T ss_pred             cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCce-EEEecCCC
Confidence            3455677889999999999988 589999999999999999999999999999999999998  7777776 99999999


Q ss_pred             eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEE
Q 002782          422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  501 (882)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  501 (882)
                      .|+.||+...+.++.+.+|-+.|.+++.+|... .+++|+.|.++++||+++..          ....+.+|..+|.++.
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~----------~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA----------SVHVLSGHTNPVASVM  284 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc----------eEEEecCCCCcceeEE
Confidence            999999999999999999999999999999876 89999999999999998653          5677889999999999


Q ss_pred             EcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE
Q 002782          502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  581 (882)
Q Consensus       502 ~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  581 (882)
                      +.|-+..+++||.|++|++||+..++...++..|+..|.+++.+|....+|+++.| .|+-|++..|..+..+.+|..-|
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence            99988899999999999999999999999999999999999999999999999986 59999999999999999999999


Q ss_pred             EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec--------cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      +.++...|| ++++|+.+|.+.+||.++|-..+..+        ..+..|.+.+|...|..|+||..|.+|++|+-.
T Consensus       364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            999998775 88999999999999999987665542        134678999999999999999999999999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.1e-35  Score=288.59  Aligned_cols=294  Identities=22%  Similarity=0.438  Sum_probs=247.2

Q ss_pred             ceeeeecCCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782           51 SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV  128 (882)
Q Consensus        51 ~~~~~l~~~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v  128 (882)
                      +.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+.+++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45688899999999999999 889999999999999999976 8999999999999999999999999999999999999


Q ss_pred             EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782          129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR  208 (882)
Q Consensus       129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~  208 (882)
                      ||+++|+++..+. ....++|+.|+|++ ...+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.
T Consensus       285 wDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            9999999999887 45678999999997 568999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782          209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  288 (882)
Q Consensus       209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~  288 (882)
                      |+.+++|+......++.+...+                                                          
T Consensus       363 dks~riWe~~~~v~ik~i~~~~----------------------------------------------------------  384 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPE----------------------------------------------------------  384 (503)
T ss_pred             CccEEEEEcCCCccchhhcchh----------------------------------------------------------
Confidence            9999999987654433221111                                                          


Q ss_pred             ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782          289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  368 (882)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  368 (882)
                                     ......+...|.                                                  +.+
T Consensus       385 ---------------~hsmP~~~~~P~--------------------------------------------------~~~  399 (503)
T KOG0282|consen  385 ---------------MHTMPCLTLHPN--------------------------------------------------GKW  399 (503)
T ss_pred             ---------------hccCcceecCCC--------------------------------------------------CCe
Confidence                           011222333344                                                  444


Q ss_pred             EEEEEcCCcEEEEeCCC---ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE
Q 002782          369 LAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG  445 (882)
Q Consensus       369 l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  445 (882)
                      ++.-+.++.|.+|.+..   ......+.||..+-.++.+.++|+|.. |++|..||.+.+||..+.+.+..+.+|.+++.
T Consensus       400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccCCcceE
Confidence            44444555555554332   122335677776666666669999998 99999999999999999999999999999999


Q ss_pred             EEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       446 ~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                      .+.|+|.....+++++.||.|++|+
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            9999999888999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.1e-33  Score=257.99  Aligned_cols=288  Identities=27%  Similarity=0.446  Sum_probs=245.8

Q ss_pred             eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL-STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~-~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      -.+.||.+.|..+.|+|+|.++|+|+.|..|.+|++ ..-+-...+++|++.|..+.|.+|+..|++++.|.+|++||++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            456799999999999999999999999999999995 4556677888999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782          133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV  212 (882)
Q Consensus       133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i  212 (882)
                      +|+++..+++|...|..+.-+.- ...++.+|+.||++++||+++..+++++.. .-+++++.|..++..+++|+-|+.|
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             cceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCce
Confidence            99999999999999999984333 346788999999999999999998887743 4579999999999999999999999


Q ss_pred             EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782          213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  292 (882)
Q Consensus       213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~  292 (882)
                      ++||++.....                                                                     
T Consensus       199 kvWd~r~~d~~---------------------------------------------------------------------  209 (338)
T KOG0265|consen  199 KVWDLRKNDGL---------------------------------------------------------------------  209 (338)
T ss_pred             eeeccccCcce---------------------------------------------------------------------
Confidence            99998654322                                                                     


Q ss_pred             ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782          293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  372 (882)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  372 (882)
                                                                            ..+.||.+.|+.+..++ ++..+.+-
T Consensus       210 ------------------------------------------------------~~lsGh~DtIt~lsls~-~gs~llsn  234 (338)
T KOG0265|consen  210 ------------------------------------------------------YTLSGHADTITGLSLSR-YGSFLLSN  234 (338)
T ss_pred             ------------------------------------------------------EEeecccCceeeEEecc-CCCccccc
Confidence                                                                  23456667777777665 66777788


Q ss_pred             EcCCcEEEEeCCC----ceeeeeeeCCC--cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782          373 TNIEQVQVYDLSS----MSCSYVLAGHS--EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  446 (882)
Q Consensus       373 ~~~~~i~i~d~~~----~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  446 (882)
                      +.|..+++||...    .+++..+.+|.  -...-+.+.++|++.. +.+|+.|..+++||......+..+.+|.+.|.+
T Consensus       235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~  313 (338)
T KOG0265|consen  235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE  313 (338)
T ss_pred             cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCcceeEEE
Confidence            8889999999763    45566777654  3455555558899887 999999999999999999999999999999999


Q ss_pred             EEEccCCCcEEEEeeCCCeEEEE
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVW  469 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~w  469 (882)
                      +.|+|..+ ++.+++.|++|.+=
T Consensus       314 ~~Fhp~e~-iils~~sdk~i~lg  335 (338)
T KOG0265|consen  314 VDFHPTEP-IILSCSSDKTIYLG  335 (338)
T ss_pred             eeecCCCc-EEEEeccCceeEee
Confidence            99999977 89999999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-32  Score=246.72  Aligned_cols=290  Identities=26%  Similarity=0.472  Sum_probs=248.6

Q ss_pred             eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---ceeeeee-eCCCcceEEeeeeeecCCCEEEEEee
Q 002782          343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGS  418 (882)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~  418 (882)
                      +.....+.+|.+.+..+++.|..+..|++++.|..|++|+...   ..+...+ .+|...|.+++  ++|.|++ |++|+
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvA--wsp~g~~-La~aS   80 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVA--WSPHGRY-LASAS   80 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeee--ecCCCcE-EEEee
Confidence            3445677899999999999997688999999999999999984   4444444 37999999999  9999996 99999


Q ss_pred             cCCeEEEEeCCC--ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782          419 KDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  496 (882)
Q Consensus       419 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (882)
                      -|.++.||.-..  .+++..+.+|...|.+++|+++|. +|++++.|+.|-+|.+....       ......++..|..+
T Consensus        81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqD  152 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQD  152 (312)
T ss_pred             ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC-------cEEEEeeecccccc
Confidence            999999998664  468889999999999999999987 99999999999999988442       34477888999999


Q ss_pred             eeEEEEcCCCcEEEEEcCCCcEEEEeCC---CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE
Q 002782          497 INSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  573 (882)
Q Consensus       497 i~~~~~s~~~~~la~~s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  573 (882)
                      |..+.|+|...+|+++++|.+|++|+-.   +-.+..++.+|...|++++|+|.|..|++++.|++|+||...+.     
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----  227 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----  227 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----
Confidence            9999999999999999999999999876   34788999999999999999999999999999999999986522     


Q ss_pred             ee-cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC------eeEE-EeccCCCceEEEEEcCC-CCEEEEEeCCCCE
Q 002782          574 FE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------ECIA-TYDKHEDKIWALAVGKK-TEMFATGGSDALV  644 (882)
Q Consensus       574 ~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i  644 (882)
                      +. .|...+..+.|.  ...|+|++.|+.|++|.-..+      +.+. .-..|...|+++.|.|. .++|++|+.||.+
T Consensus       228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v  305 (312)
T KOG0645|consen  228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIV  305 (312)
T ss_pred             cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceE
Confidence            22 277889999998  458999999999999976543      1111 22468899999999995 7799999999999


Q ss_pred             EEEECC
Q 002782          645 NLWHDS  650 (882)
Q Consensus       645 ~iw~~~  650 (882)
                      ++|.+.
T Consensus       306 ~~W~l~  311 (312)
T KOG0645|consen  306 NFWELE  311 (312)
T ss_pred             EEEEec
Confidence            999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.1e-34  Score=269.64  Aligned_cols=287  Identities=25%  Similarity=0.500  Sum_probs=246.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC  180 (882)
Q Consensus       101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~  180 (882)
                      ....|.|+.++.  ..+++|..|.+|+|||..+-.++..+.||++.|.|+.|..    .++++|+.|.+|++||++++++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc----eEEEecCCCceEEEEeccCCch
Confidence            456899998864  4699999999999999999999999999999999999953    4799999999999999999999


Q ss_pred             EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782          181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  260 (882)
Q Consensus       181 ~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (882)
                      +.++-+|...|..+.|+.  .++++++.|.++.+||+....                                       
T Consensus       270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps---------------------------------------  308 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT---------------------------------------  308 (499)
T ss_pred             hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch---------------------------------------
Confidence            999999999999999974  489999999999999986432                                       


Q ss_pred             cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782          261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  340 (882)
Q Consensus       261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  340 (882)
                                                                                                      
T Consensus       309 --------------------------------------------------------------------------------  308 (499)
T KOG0281|consen  309 --------------------------------------------------------------------------------  308 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782          341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD  420 (882)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  420 (882)
                       ...+.+.+.||...|..+.|   +++++++++.|.+|++|+..++.+++++.+|...|.|+.    -.++ ++++|+.|
T Consensus       309 -~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Yr~r-lvVSGSSD  379 (499)
T KOG0281|consen  309 -DITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----YRDR-LVVSGSSD  379 (499)
T ss_pred             -HHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----ccCe-EEEecCCC
Confidence             12233556788888888888   566999999999999999999999999999999999986    3455 49999999


Q ss_pred             CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782          421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  500 (882)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  500 (882)
                      .+|++||+..|.+++.+.+|..-|.++.|...   .+++|+.||+|++||+....... .+....+......|.+.|..+
T Consensus       380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpr-a~~~~~Cl~~lv~hsgRVFrL  455 (499)
T KOG0281|consen  380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPR-APASTLCLRTLVEHSGRVFRL  455 (499)
T ss_pred             ceEEEEeccccHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCc-ccccchHHHhhhhccceeEEE
Confidence            99999999999999999999999999999865   59999999999999998764321 222333566677899999999


Q ss_pred             EEcCCCcEEEEEcCCCcEEEEeCCCceeE
Q 002782          501 AVAPNDSLVCTGSQDRTACVWRLPDLVSV  529 (882)
Q Consensus       501 ~~s~~~~~la~~s~dg~i~iwd~~~~~~~  529 (882)
                      .|  |...+++++.|.+|.|||+.++.+.
T Consensus       456 QF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  456 QF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            98  4568999999999999999877554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-32  Score=283.88  Aligned_cols=344  Identities=23%  Similarity=0.463  Sum_probs=280.0

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL  176 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~  176 (882)
                      .|...+..|..++|+|...++.++-..|.|.+||..-+.+++.|..|.++|..++|+|..  .++++|++|..|+||++.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC--CeEEecCCccEEEEEecc
Confidence            344556889999999999999999999999999999999999999999999999999965  459999999999999999


Q ss_pred             CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782          177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  256 (882)
Q Consensus       177 ~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (882)
                      +.+|+.++.+|-..|..+.|++.-.++++++.|.+|++|++.+..                                   
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-----------------------------------  126 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-----------------------------------  126 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-----------------------------------
Confidence            999999999999999999999999999999999999998875432                                   


Q ss_pred             hccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccc
Q 002782          257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  336 (882)
Q Consensus       257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  336 (882)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (1202)
T KOG0292|consen  127 --------------------------------------------------------------------------------  126 (1202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                                                                         ++..+.||...|.|..  |.|.... +++
T Consensus       127 ---------------------------------------------------~iavltGHnHYVMcAq--FhptEDl-IVS  152 (1202)
T KOG0292|consen  127 ---------------------------------------------------CIAVLTGHNHYVMCAQ--FHPTEDL-IVS  152 (1202)
T ss_pred             ---------------------------------------------------eEEEEecCceEEEeec--cCCccce-EEE
Confidence                                                               3335667777787777  7776665 888


Q ss_pred             eecCCeEEEEeCCC--------c---------------------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEE
Q 002782          417 GSKDNSVRLWDSES--------R---------------------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK  467 (882)
Q Consensus       417 ~~~dg~i~iwd~~~--------~---------------------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~  467 (882)
                      ++-|.+||+||+..        +                     -....+.+|...|.-++|+|.-+ ++++|+.|..|+
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVK  231 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVK  231 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceee
Confidence            88888888888642        1                     12235679999999999999877 899999999999


Q ss_pred             EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC
Q 002782          468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  547 (882)
Q Consensus       468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  547 (882)
                      +|.++..        +.-...+..+|...|.++-|+|...++++.+.|++|++||+...+.+.+++......|.++-+|.
T Consensus       232 lWrmnet--------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~  303 (1202)
T KOG0292|consen  232 LWRMNET--------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE  303 (1202)
T ss_pred             EEEeccc--------cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC
Confidence            9998754        22355677899999999999999999999999999999999999999999988899999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe--eEEEeccC---CCc
Q 002782          548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKH---EDK  622 (882)
Q Consensus       548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h---~~~  622 (882)
                      .+++++|. |+-+.||-++...+.              +.-+++.|+-.- |..|+-+|+.+.+  .+..+...   ..+
T Consensus       304 lNLfAAgH-DsGm~VFkleRErpa--------------~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~  367 (1202)
T KOG0292|consen  304 LNLFAAGH-DSGMIVFKLERERPA--------------YAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQP  367 (1202)
T ss_pred             cceeeeec-CCceEEEEEcccCce--------------EEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCC
Confidence            99887765 455777776533222              112234444443 7888999988754  33344322   356


Q ss_pred             eEEEEEcCCCCEEE
Q 002782          623 IWALAVGKKTEMFA  636 (882)
Q Consensus       623 v~~l~~s~~~~~l~  636 (882)
                      +.++.++|....+.
T Consensus       368 ~~smsYNpae~~vl  381 (1202)
T KOG0292|consen  368 PRSLSYNPAENAVL  381 (1202)
T ss_pred             cceeeeccccCeEE
Confidence            77788888655443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-29  Score=259.41  Aligned_cols=495  Identities=17%  Similarity=0.209  Sum_probs=352.0

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC  136 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h-~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~  136 (882)
                      -..+|+|+|||.+.+.||++-.+|.|-+|++..+- +...+.++ +..|.+++|++ +.+|.+.+.+|.|.-||+.++++
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence            35689999999999999999999999999998753 44556664 57899999994 55788888999999999999999


Q ss_pred             EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE--EecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782          137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~--~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      ...+....+.|++++.+|.++.  ++.|++||.+..++...++...  .+....+.|.++.|+|++..+++|+.||.|++
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~--l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTI--LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             eEEecCCCcceeEEEeCCccce--EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            9999999999999999998765  9999999988888888877654  34556789999999999999999999999999


Q ss_pred             EecCCceeeeeecC-----c----ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce
Q 002782          215 WDLRDYSCKLTVPT-----Y----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC  285 (882)
Q Consensus       215 wd~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~  285 (882)
                      ||...+..+.....     .    .-+-++.+..++                        .+++|...|+|.+||...+.
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------------------------tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------------------------TIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC------------------------cEEEecCCceEEEEcccCcc
Confidence            99998775541110     0    011222222221                        35555555555555554431


Q ss_pred             eeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCC
Q 002782          286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE  365 (882)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (882)
                                                                                 +.....-|...|.+++..+ +
T Consensus       237 -----------------------------------------------------------LiqS~~~h~adVl~Lav~~-~  256 (691)
T KOG2048|consen  237 -----------------------------------------------------------LIQSHSCHDADVLALAVAD-N  256 (691)
T ss_pred             -----------------------------------------------------------hhhhhhhhhcceeEEEEcC-C
Confidence                                                                       2233445777888888765 6


Q ss_pred             CcEEEEEEcCCcEEEEeCCCcee----eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc
Q 002782          366 EQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM  441 (882)
Q Consensus       366 ~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  441 (882)
                      ++.+.+++-|+.+.-|...+...    ......|...+.+++  ..++   .+++|+.|..+.+-........... .+.
T Consensus       257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a--v~~~---~l~sgG~d~~l~i~~s~~~~~~~h~-~~~  330 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA--VIEN---ALISGGRDFTLAICSSREFKNMDHR-QKN  330 (691)
T ss_pred             CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee--eecc---eEEecceeeEEEEccccccCchhhh-ccc
Confidence            67888888899999888776543    223457888899987  5554   4999999998887654331111000 010


Q ss_pred             ccE-E-EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEE
Q 002782          442 GAV-G-AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC  519 (882)
Q Consensus       442 ~~v-~-~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~  519 (882)
                      ... . -+...|.  .+++.--.+..+.+|.+.......+.... ............|.|.++||+|+++|.++- ...+
T Consensus       331 ~~p~~~~v~~a~~--~~L~~~w~~h~v~lwrlGS~~~~g~~~~~-~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~  406 (691)
T KOG2048|consen  331 LFPASDRVSVAPE--NRLLVLWKAHGVDLWRLGSVILQGEYNYI-HLLKLFTKEKENISCAAISPDGNLIAISTV-SRTK  406 (691)
T ss_pred             cccccceeecCcc--ceEEEEeccccccceeccCcccccccChh-hheeeecCCccceeeeccCCCCCEEEEeec-cceE
Confidence            000 0 1122222  23454455666777777654222111111 122222334567999999999999999864 5688


Q ss_pred             EEeCCCceeEEEEe-----cccCceEEEEEcCCCCEEEEee-CCCcEEEEecCCC--ceeeEee--cCcCCEEEEEEEeC
Q 002782          520 VWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG--SCLKTFE--GHTSSVLRASFLTR  589 (882)
Q Consensus       520 iwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~--~~~~~~~--~h~~~v~~~~~s~~  589 (882)
                      ||.+.....+....     ....+...+.|+-|+..++.++ .+..+.++++.+.  +.+..+.  +-...|..+..+++
T Consensus       407 iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd  486 (691)
T KOG2048|consen  407 IYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD  486 (691)
T ss_pred             EEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC
Confidence            88886532222221     2344678889999988888887 6778888887654  3333332  34578999999999


Q ss_pred             CCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEc-CCCCEEEEEeCCCCEEEEECC
Q 002782          590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG-KKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       590 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      |+||+..+.+|.|.+|++++++.-......+..|++++|+ ++.+.|+.+..|+.+.-+|+.
T Consensus       487 G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~  548 (691)
T KOG2048|consen  487 GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE  548 (691)
T ss_pred             CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence            9999999999999999999988766554556889999999 466789999999999999983

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.9e-32  Score=293.55  Aligned_cols=291  Identities=33%  Similarity=0.579  Sum_probs=253.9

Q ss_pred             eeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           54 STIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        54 ~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      ..+.+| ...|+++.|||+|+++++++.++.+++|+..+++  ..+.+.+|...|..++|+|+++++++++.|++|+|||
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            344444 7899999999999999999999999999998888  7888899999999999999999999999999999999


Q ss_pred             C-CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          131 V-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       131 ~-~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      + ..+.++..+++|...|++++|+|++  .++++|+.|++|++||+.+++++..+.+|.+.|++++|++++.+|++++.|
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9 6679999999999999999999987  459999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCceee--eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceee
Q 002782          210 KVVNLWDLRDYSCK--LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  287 (882)
Q Consensus       210 g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~  287 (882)
                      +.|++||+.++...  ..+                                                             
T Consensus       310 ~~i~vwd~~~~~~~~~~~~-------------------------------------------------------------  328 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLL-------------------------------------------------------------  328 (456)
T ss_pred             ccEEEEECCCCceeeeecc-------------------------------------------------------------
Confidence            99999999876521  111                                                             


Q ss_pred             eecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC--ceEEEEEeCCC
Q 002782          288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE--EILDLKFLGEE  365 (882)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~  365 (882)
                                                                                    .++..  .+..+.|++ +
T Consensus       329 --------------------------------------------------------------~~~~~~~~~~~~~fsp-~  345 (456)
T KOG0266|consen  329 --------------------------------------------------------------SGAENSAPVTSVQFSP-N  345 (456)
T ss_pred             --------------------------------------------------------------cCCCCCCceeEEEECC-C
Confidence                                                                          01111  355666665 8


Q ss_pred             CcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeee-eeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-ccc
Q 002782          366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT-CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGA  443 (882)
Q Consensus       366 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~  443 (882)
                      +.++++++.++.+++||+..+.+...+.+|...+.|+.. +.++.+.. +++|+.|+.|.+||..++..+..+.+| ...
T Consensus       346 ~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~  424 (456)
T KOG0266|consen  346 GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHSKAA  424 (456)
T ss_pred             CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCCCCc
Confidence            889999999999999999999999999999887655532 23556666 999999999999999999999999999 899


Q ss_pred             EEEEEEccCCCcEEEEee--CCCeEEEEecC
Q 002782          444 VGAVAFSKKLQNFLVSGS--SDHTIKVWSFD  472 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~--~dg~i~~wd~~  472 (882)
                      +..+.+++... ++++++  .|+.+++|...
T Consensus       425 ~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence            99999999866 788887  78999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-31  Score=278.06  Aligned_cols=286  Identities=33%  Similarity=0.569  Sum_probs=258.9

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  427 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  427 (882)
                      .+.+|...|.++.|.+ +++++++++.+|.+.+|+..++.....+..|...+..+.  +.++++. +++++.+|.+++||
T Consensus         4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence            4557889999999988 578999999999999999999888888889999988887  8888876 89999999999999


Q ss_pred             CCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782          428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  507 (882)
Q Consensus       428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  507 (882)
                      +.+++....+..|...+.++.|++++. ++++++.|+.+.+|++....          .......|...+.+++|+|++.
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK----------CLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE----------EEEEeccCCCcEEEEEEcCcCC
Confidence            999888888889999999999999855 77888889999999987432          2333446888999999999999


Q ss_pred             EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE
Q 002782          508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  587 (882)
Q Consensus       508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  587 (882)
                      ++++++.|+.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+..++.+..+..|...+.++.|+
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  228 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS  228 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence            99999889999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             eCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       588 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      |++.++++++.||.|++|++.+++.+..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9988888888899999999999999999999999999999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=239.39  Aligned_cols=284  Identities=19%  Similarity=0.296  Sum_probs=251.1

Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      ..+..+.+.|..++|.. ++++..+++++..+++||...+.++.++.+|...|..++  .+.++.. +++|+.|..+.+|
T Consensus        11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw   86 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW   86 (307)
T ss_pred             eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence            45567888999999987 889999999999999999999999999999999999998  7777777 9999999999999


Q ss_pred             eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782          427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  506 (882)
Q Consensus       427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  506 (882)
                      |+++|+.++.+.+|.+.|+.+.|+.+.. .+++|+.|.++++||.+...        .++..++......|.++.++  +
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~--~  155 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA--E  155 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec--c
Confidence            9999999999999999999999998865 89999999999999998753        33566666677788888875  5


Q ss_pred             cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEE--E
Q 002782          507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR--A  584 (882)
Q Consensus       507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~--~  584 (882)
                      ..+++|+.||+++.||++.|.......+  .+|++++|++|+++.++++-|+++++.|-.+|+.++.+.||.+.-..  +
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence            6899999999999999999987766654  57999999999999999999999999999999999999999876544  5


Q ss_pred             EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc-eEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      +++.....+++|++||.|++||+.++..+..+..|... |.++.++|.-..|++++..+ +..|.
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence            67777889999999999999999999999999988777 89999999988888777555 45564

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.6e-32  Score=293.68  Aligned_cols=283  Identities=27%  Similarity=0.481  Sum_probs=257.4

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeC-C
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E  429 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~  429 (882)
                      ...+.++.|++ ++..++.++.++.+++|+..+..  ....+.+|...|..+.  |+|++.. +++++.|+++++||+ .
T Consensus       159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence            56788888888 66669999999999999998777  7777889999999999  9999997 999999999999999 5


Q ss_pred             CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782          430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  509 (882)
Q Consensus       430 ~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  509 (882)
                      .+..+.++.+|...|++++|+|++ +++++|+.|++|++||+.++.          ....+.+|...|++++|++++.+|
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~----------~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE----------CVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe----------EEEeeeccCCceEEEEECCCCCEE
Confidence            668999999999999999999999 599999999999999998643          777888999999999999999999


Q ss_pred             EEEcCCCcEEEEeCCCce--eEEEEecccCc--eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE---E
Q 002782          510 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV---L  582 (882)
Q Consensus       510 a~~s~dg~i~iwd~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---~  582 (882)
                      ++++.|+.|++||+.++.  +...+.++...  +++++|+|++.++++++.|+.+++||+..+.++..+.+|...+   .
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence            999999999999999998  56777776655  9999999999999999999999999999999999999998853   3


Q ss_pred             EEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC-CCceEEEEEcCCCCEEEEEe--CCCCEEEEECC
Q 002782          583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS  650 (882)
Q Consensus       583 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~--~dg~i~iw~~~  650 (882)
                      +..+++.|.++++|+.|+.|++|++.++..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            3455778999999999999999999999999999999 89999999999999999998  79999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=239.06  Aligned_cols=286  Identities=21%  Similarity=0.386  Sum_probs=248.5

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~  131 (882)
                      ..+.+..+.++|.++.|.-||+|.++++.|.+|++|+...|.++++..+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--eEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      .+|+....+++|.+.|+.++|+.+..  ++++|+.|..+++||..+.  ++++.+......|.++..+  +..+++|+.|
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D  164 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD  164 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence            99999999999999999999988654  5999999999999998764  6888888888889998886  4578999999


Q ss_pred             CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782          210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  289 (882)
Q Consensus       210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~  289 (882)
                      |+++.||++.+.....                                                                
T Consensus       165 GtvRtydiR~G~l~sD----------------------------------------------------------------  180 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSD----------------------------------------------------------------  180 (307)
T ss_pred             CcEEEEEeecceeehh----------------------------------------------------------------
Confidence            9999999876542110                                                                


Q ss_pred             cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782          290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  369 (882)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  369 (882)
                                                                                   ....+|.++.|++ +++..
T Consensus       181 -------------------------------------------------------------y~g~pit~vs~s~-d~nc~  198 (307)
T KOG0316|consen  181 -------------------------------------------------------------YFGHPITSVSFSK-DGNCS  198 (307)
T ss_pred             -------------------------------------------------------------hcCCcceeEEecC-CCCEE
Confidence                                                                         0224667777776 67788


Q ss_pred             EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccccc-EEEEE
Q 002782          370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVA  448 (882)
Q Consensus       370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~  448 (882)
                      .+++-++.+++.|-.+++....+.||...-..++.|+...... +++|+.||.|.+||+.....+..+..+... +..+.
T Consensus       199 La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth-V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~  277 (307)
T KOG0316|consen  199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH-VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS  277 (307)
T ss_pred             EEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee-EEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence            8888889999999999999999999999999999888887777 999999999999999999999999888887 89999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEe
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                      ++|....++.+++  +.+.+|-
T Consensus       278 ~hp~~~~f~~A~~--~~~~~~~  297 (307)
T KOG0316|consen  278 CHPTMDDFITATG--HGDLFWY  297 (307)
T ss_pred             cccCccceeEecC--Cceecee
Confidence            9998775444432  3455554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.6e-33  Score=259.97  Aligned_cols=283  Identities=23%  Similarity=0.345  Sum_probs=239.3

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe--------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW--------KGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      ...-+-|..|||||+||++|+.||.|.+||..+|+....+        .-+..+|.|+.||.|...||+|+.||.|+||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            3456789999999999999999999999999999876544        34788999999999999999999999999999


Q ss_pred             CCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          131 VDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       131 ~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      +.+|.|+.+|. .|+..|+|+.|+.|+..  +++++.|.++++.-+.+|+++..+++|.+.|+...|++||.++++++.|
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99999999987 89999999999999887  9999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782          210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  289 (882)
Q Consensus       210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~  289 (882)
                      |+|++|+..+.+++.++....                                                           
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~-----------------------------------------------------------  390 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLG-----------------------------------------------------------  390 (508)
T ss_pred             ccEEEecCcchhhhhhccCCC-----------------------------------------------------------
Confidence            999999999887766543211                                                           


Q ss_pred             cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782          290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  369 (882)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  369 (882)
                                                                                    ..-+|..+-..|.+..++
T Consensus       391 --------------------------------------------------------------~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  391 --------------------------------------------------------------TDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             --------------------------------------------------------------CcccceeEEEcCCCCceE
Confidence                                                                          112233444455566677


Q ss_pred             EEEEcCCcEEEEeCCCceeeeeeeC----CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE
Q 002782          370 AVATNIEQVQVYDLSSMSCSYVLAG----HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG  445 (882)
Q Consensus       370 ~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  445 (882)
                      +++...+.+++.++.. +.++.+..    ..+.|.|+   .+|.|.+ +.+.+.|+.++.|...+|..-..+.-|...+-
T Consensus       409 iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~---lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvI  483 (508)
T KOG0275|consen  409 IVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAI---LSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI  483 (508)
T ss_pred             EEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEE---ecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccccccc
Confidence            7777777777777643 33434432    12334444   8899998 88999999999999999999999999999999


Q ss_pred             EEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       446 ~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                      .++-+|. ++++++-+.||.+++|.
T Consensus       484 Gl~HHPH-qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  484 GLTHHPH-QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccccCcc-cchhhhhcccchhhhcC
Confidence            9999997 45899999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1e-30  Score=273.16  Aligned_cols=288  Identities=35%  Similarity=0.641  Sum_probs=251.9

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      ++.+.+|..+|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            35677899999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782          133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV  212 (882)
Q Consensus       133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i  212 (882)
                      ++.....+..|...|.++.|+|++  .++++++.+|.|.+||+.+++....+..|...+.++.|+|++.++++++.|+.|
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            988888999999999999999974  357777779999999999999999999999999999999999998888889999


Q ss_pred             EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782          213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  292 (882)
Q Consensus       213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~  292 (882)
                      ++||+...+....+                                                                  
T Consensus       160 ~i~d~~~~~~~~~~------------------------------------------------------------------  173 (289)
T cd00200         160 KLWDLRTGKCVATL------------------------------------------------------------------  173 (289)
T ss_pred             EEEEccccccceeE------------------------------------------------------------------
Confidence            99998643322111                                                                  


Q ss_pred             ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782          293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  372 (882)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  372 (882)
                                                                               ..+...+.++.|.+ ++..++++
T Consensus       174 ---------------------------------------------------------~~~~~~i~~~~~~~-~~~~l~~~  195 (289)
T cd00200         174 ---------------------------------------------------------TGHTGEVNSVAFSP-DGEKLLSS  195 (289)
T ss_pred             ---------------------------------------------------------ecCccccceEEECC-CcCEEEEe
Confidence                                                                     12334566677766 55677777


Q ss_pred             EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782          373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  452 (882)
Q Consensus       373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~  452 (882)
                      +.++.+.+||+.++.....+..|...+.++.  +.+++.. +++++.+|.+++||+.++.....+..|...+.+++|+|+
T Consensus       196 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVA--FSPDGYL-LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             cCCCcEEEEECCCCceecchhhcCCceEEEE--EcCCCcE-EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence            7799999999999888888888999999998  7788654 788888999999999999988888899999999999999


Q ss_pred             CCcEEEEeeCCCeEEEEe
Q 002782          453 LQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       453 ~~~~l~s~~~dg~i~~wd  470 (882)
                      +. ++++++.|+.+++|+
T Consensus       273 ~~-~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GK-RLASGSADGTIRIWD  289 (289)
T ss_pred             CC-EEEEecCCCeEEecC
Confidence            76 799999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4e-32  Score=244.32  Aligned_cols=292  Identities=20%  Similarity=0.317  Sum_probs=260.8

Q ss_pred             eeecccCCceEEEEEeC--CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782          347 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  424 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  424 (882)
                      ....||..+|.+++|++  +++-+|++++.|+.-.+-+-+++..+.++.+|.+.|.+..  ...+... .++++.|-+-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~--l~~na~~-aasaaadftak   84 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT--LNKNATR-AASAAADFTAK   84 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee--cCchhhh-hhhhcccchhh
Confidence            45678999999999977  7888999999999999999999999999999999998875  4444444 88899999999


Q ss_pred             EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      +||.-+|..+..+. |..-|.+++|+.+.. .|++|+.++-+++||++....         +...+.+|.+.|..+.|..
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH  153 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence            99999998887764 888999999999966 799999999999999986532         4455678999999999999


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE
Q 002782          505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  584 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  584 (882)
                      ..+.+.+++.|++|++||.++++.+.++. .+.+|+++.++++|++|.++.. +.|.+||..+...++.+. -...|.+.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SA  230 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESA  230 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-Cccccccc
Confidence            99999999999999999999999999988 6788999999999998888765 789999999999999887 44578889


Q ss_pred             EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH
Q 002782          585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  655 (882)
Q Consensus       585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  655 (882)
                      .++|+...++.|+.|+.++.||..+|+-+..+ .+|.++|.|+.|+|||..-++|+.||+|++|....++..
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999999999999999998886 899999999999999999999999999999998876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6e-32  Score=266.32  Aligned_cols=291  Identities=20%  Similarity=0.299  Sum_probs=257.9

Q ss_pred             eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC-ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      .......||+..|.++.|+|..+.+|++++.|+.|++|++.. +.+++++.+|..+|..+.  ++.+|.. +.+++-|+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeeccee
Confidence            345678899999999999999999999999999999999876 899999999999999998  9999998 999999999


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      +++||+++|+++..+.. ...++++.|.|++++.+++|+.|+.|+.||++.+.          .......|-+.|+.+.|
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITF  350 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEE
Confidence            99999999999987753 45788999999998899999999999999998653          56667788899999999


Q ss_pred             cCCCcEEEEEcCCCcEEEEeCCCceeEEEEe-cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC---ceeeEeecCc
Q 002782          503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHT  578 (882)
Q Consensus       503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~  578 (882)
                      -++|+.+++.+.|++++||+.....++.... .+.-...++..+|++++++.-+.|..|.+|.+...   ..-+.|+||.
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            9999999999999999999998876655433 23345678999999999999999999999997543   3346788886


Q ss_pred             C--CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCC-CEEEEEeCCCCEEEEE
Q 002782          579 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWH  648 (882)
Q Consensus       579 ~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw~  648 (882)
                      .  --..+.|||||.+|++|+.||.+.+||.++-+.+..+..|+..+..+.|+|.. ..+||+|.||.|++|+
T Consensus       431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            4  45678999999999999999999999999999999999999999999999965 4799999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.9e-30  Score=300.82  Aligned_cols=241  Identities=18%  Similarity=0.276  Sum_probs=204.8

Q ss_pred             CceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE
Q 002782          354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  433 (882)
Q Consensus       354 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  433 (882)
                      ..+.+++|.+..+.++++++.||.|++||+.++.....+.+|.+.|.+++  ++|.+..++++|+.||.|++||+.++..
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~--~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID--YSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEE--EcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            45677888887788999999999999999999999999999999999999  8764333499999999999999999988


Q ss_pred             EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc
Q 002782          434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  513 (882)
Q Consensus       434 ~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s  513 (882)
                      +..+..+ ..+.++.|++....++++|+.||.|++||+.....         ......+|...|.++.|. ++.++++++
T Consensus       611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---------~~~~~~~h~~~V~~v~f~-~~~~lvs~s  679 (793)
T PLN00181        611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---------PLCTMIGHSKTVSYVRFV-DSSTLVSSS  679 (793)
T ss_pred             EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---------cceEecCCCCCEEEEEEe-CCCEEEEEE
Confidence            8877755 67899999665455899999999999999875321         223446799999999997 778999999


Q ss_pred             CCCcEEEEeCCC------ceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe-------------
Q 002782          514 QDRTACVWRLPD------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF-------------  574 (882)
Q Consensus       514 ~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------  574 (882)
                      .|++|++||+..      ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+             
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~  759 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV  759 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence            999999999974      3567889999999999999999999999999999999998765443322             


Q ss_pred             ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       575 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            234567999999999999999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.5e-31  Score=250.23  Aligned_cols=291  Identities=21%  Similarity=0.361  Sum_probs=243.1

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      |.+.|.++...   +.++.+|+.||.+++||.. |++...+.||.+++..+++....+....+++++.|.++++|..+.+
T Consensus       104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            55555555543   6799999999999999974 6677799999999998876554444456999999999999998876


Q ss_pred             eE----EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC---------------Ccccccchhhhhh
Q 002782          432 CC----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPMNLKAKAVVAA  492 (882)
Q Consensus       432 ~~----~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---------------~~~~~~~~~~~~~  492 (882)
                      ..    +....+|...|.++...+++. .+++|+.|.++++|+.........               ......+..++.+
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            53    334559999999999999987 799999999999999433211110               1112235566789


Q ss_pred             cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc---
Q 002782          493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---  569 (882)
Q Consensus       493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~---  569 (882)
                      |..+|.++.|++ ...+++++.|.+|+.||+.++....++.+ ...+.++..+|...+|++|+.|..+++||.+++.   
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence            999999999998 67899999999999999999999888874 5679999999999999999999999999988762   


Q ss_pred             eeeEeecCcCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCe-eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782          570 CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  647 (882)
Q Consensus       570 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  647 (882)
                      ..++|.||.+.|..+.|+|... +|++++.|+++++||+++.. ++..+.+|.++|.++.|. ++.+|++||.|..|+|+
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence            4578999999999999999655 67999999999999999887 999999999999999997 56689999999999998


Q ss_pred             ECC
Q 002782          648 HDS  650 (882)
Q Consensus       648 ~~~  650 (882)
                      .-.
T Consensus       416 ~~~  418 (423)
T KOG0313|consen  416 KGS  418 (423)
T ss_pred             ccc
Confidence            654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4.9e-31  Score=253.98  Aligned_cols=290  Identities=20%  Similarity=0.315  Sum_probs=247.1

Q ss_pred             eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      ...+..|.++|.-+.|++ ++++||+++.|.+..+|.+...   +...++.+|..+|..+.  |+|++++ +++++.+..
T Consensus       217 ~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdry-LlaCg~~e~  292 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRY-LLACGFDEV  292 (519)
T ss_pred             hhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCe-EEecCchHh
Confidence            345677999999999988 8999999999999999987644   34778899999999999  9999998 777777888


Q ss_pred             EEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEE
Q 002782          423 VRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  501 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  501 (882)
                      +.+||..+|.+...+. ++...+.+++|.|||. .+++|+.|+++..||++......     .+     ......|.+++
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~-----W~-----gvr~~~v~dla  361 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGN-----WE-----GVRDPKVHDLA  361 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhc-----cc-----ccccceeEEEE
Confidence            9999999998877654 3578999999999998 58999999999999998652111     10     11124688999


Q ss_pred             EcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-
Q 002782          502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-  580 (882)
Q Consensus       502 ~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-  580 (882)
                      +++||+++++.+.|..|++++.++......+. ...+|++++.|.|++++++.-.+..+++||+.....++.+.||... 
T Consensus       362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             EcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence            99999999999999999999988766554333 5678999999999999999999999999999999999999999754 


Q ss_pred             -EEEEEEEe-CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCC-CEEEEEeCCCCEEEEECCC
Q 002782          581 -VLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST  651 (882)
Q Consensus       581 -v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw~~~~  651 (882)
                       +..-+|-. +..++++|+.|+.|+||+..+|+++..+.+|...|++++|+|.. .++|++|+||+|+||....
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence             55556653 45799999999999999999999999999999999999999965 5789999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.3e-29  Score=298.56  Aligned_cols=286  Identities=18%  Similarity=0.254  Sum_probs=237.0

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--------eeeeeeCCCcceEEeeeeeecCCCEEEEEeec
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSK  419 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  419 (882)
                      .+.+|.+.|.+++|.+ +++++++|+.|+.|++|+..+..        ....+. +...+.++.  +.+.....+++++.
T Consensus       478 ~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~--~~~~~~~~las~~~  553 (793)
T PLN00181        478 DLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC--WNSYIKSQVASSNF  553 (793)
T ss_pred             cccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE--eccCCCCEEEEEeC
Confidence            3456888999999997 67899999999999999975421        111222 345677776  66654444999999


Q ss_pred             CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782          420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  499 (882)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (882)
                      ||+|++||+.+++.+..+.+|.+.|++++|+|....+|++|+.|++|++||+....          ...... +...+.+
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----------~~~~~~-~~~~v~~  622 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----------SIGTIK-TKANICC  622 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----------EEEEEe-cCCCeEE
Confidence            99999999999999999999999999999998545589999999999999997542          111222 3357889


Q ss_pred             EEEc-CCCcEEEEEcCCCcEEEEeCCCce-eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC------Ccee
Q 002782          500 LAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCL  571 (882)
Q Consensus       500 ~~~s-~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~  571 (882)
                      +.|+ ++|.+|++|+.||.|++||+.+.. ....+.+|...|.++.|. ++.+|++++.|++|++||+..      +.++
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            9995 579999999999999999998765 567788999999999997 688999999999999999974      3678


Q ss_pred             eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe-------------ccCCCceEEEEEcCCCCEEEEE
Q 002782          572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------DKHEDKIWALAVGKKTEMFATG  638 (882)
Q Consensus       572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~s~~~~~l~s~  638 (882)
                      .++.+|...+..++|++++.+|++|+.||.|++|+...+..+..+             ..|...|.+++|+|++..|++|
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence            899999999999999999999999999999999998766444222             2345679999999999999999


Q ss_pred             eCCCCEEEEEC
Q 002782          639 GSDALVNLWHD  649 (882)
Q Consensus       639 ~~dg~i~iw~~  649 (882)
                      +.||.|+||++
T Consensus       782 ~~dG~I~i~~~  792 (793)
T PLN00181        782 NSTGNIKILEM  792 (793)
T ss_pred             cCCCcEEEEec
Confidence            99999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=234.79  Aligned_cols=287  Identities=25%  Similarity=0.350  Sum_probs=240.3

Q ss_pred             eeecCCCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           54 STIEGGSDTITALALSP---DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~sp---d~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      .+..||+.+|..++|||   +|-+|++++.|+.=.+-+-++|.-+.+|.||++.|.+.+.+.+..+.|+++.|-+-+|||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            45678999999999985   899999999999988888899999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe-EEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~-~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      .-+|..++.|. |...|..++|+.|.++  |++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.+++++.|
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~ds~~--lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd  164 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQDSNY--LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD  164 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecccchh--hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence            99999999887 8999999999998776  9999999999999998654 667889999999999999999999999999


Q ss_pred             CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782          210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  289 (882)
Q Consensus       210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~  289 (882)
                      ++||+||.+++..++++....++.++...+++.                        +++....                
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~------------------------ilTia~g----------------  204 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR------------------------ILTIAYG----------------  204 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCC------------------------EEEEecC----------------
Confidence            999999999999888887776666655554442                        2222233                


Q ss_pred             cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782          290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  369 (882)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  369 (882)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (334)
T KOG0278|consen  205 --------------------------------------------------------------------------------  204 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee-ecccccEEEEE
Q 002782          370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA  448 (882)
Q Consensus       370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~  448 (882)
                            +.|..||..+...+..+.-. ..|.+.+  ..|+... +++|+.|..++.||+.++..+..+ .+|.++|.|+.
T Consensus       205 ------ssV~Fwdaksf~~lKs~k~P-~nV~SAS--L~P~k~~-fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr  274 (334)
T KOG0278|consen  205 ------SSVKFWDAKSFGLLKSYKMP-CNVESAS--LHPKKEF-FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR  274 (334)
T ss_pred             ------ceeEEeccccccceeeccCc-ccccccc--ccCCCce-EEecCcceEEEEEeccCCceeeecccCCCCceEEEE
Confidence                  44555555444443332211 1233333  5677755 999999999999999999999886 89999999999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      |+|+|. ..++|++||+|++|.....
T Consensus       275 FSPdGE-~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  275 FSPDGE-LYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ECCCCc-eeeccCCCceEEEEEecCC
Confidence            999998 7899999999999998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=242.43  Aligned_cols=285  Identities=21%  Similarity=0.355  Sum_probs=244.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------eecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--------FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV  172 (882)
Q Consensus       101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~--------~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v  172 (882)
                      .+..+.|..|||||+||++|+.||.|.|||..+|+....        |.-+...|.|+.|+.|...  +++|+.||.|++
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM--lAsGsqDGkIKv  289 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM--LASGSQDGKIKV  289 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH--hhccCcCCcEEE
Confidence            456788999999999999999999999999999875543        3357889999999998765  999999999999


Q ss_pred             EECCCCeEEEEec-CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782          173 WDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY  251 (882)
Q Consensus       173 wd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (882)
                      |.+.+|.|++.+. .|...|+++.|+.|+..+++++.|.++++.-+.+                                
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--------------------------------  337 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--------------------------------  337 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--------------------------------
Confidence            9999999999996 8999999999999999999999888777765443                                


Q ss_pred             hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782          252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY  331 (882)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  331 (882)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (508)
T KOG0275|consen  338 --------------------------------------------------------------------------------  337 (508)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782          332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK  411 (882)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  411 (882)
                                                                            |++...+.||+..|+...  +.++|.
T Consensus       338 ------------------------------------------------------GK~LKEfrGHsSyvn~a~--ft~dG~  361 (508)
T KOG0275|consen  338 ------------------------------------------------------GKCLKEFRGHSSYVNEAT--FTDDGH  361 (508)
T ss_pred             ------------------------------------------------------chhHHHhcCccccccceE--EcCCCC
Confidence                                                                  344446677888887777  889998


Q ss_pred             EEEEEeecCCeEEEEeCCCceEEeeeec--ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782          412 ILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  489 (882)
Q Consensus       412 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  489 (882)
                      . +++++.||+|++|+..+..|+.++..  ...+|.++..-|.++..++.+...+++.+.++...-        .+....
T Consensus       362 ~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv--------VrsfsS  432 (508)
T KOG0275|consen  362 H-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV--------VRSFSS  432 (508)
T ss_pred             e-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE--------Eeeecc
Confidence            8 99999999999999999999988763  556888998889888889999999999999986531        111112


Q ss_pred             hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782          490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS  564 (882)
Q Consensus       490 ~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  564 (882)
                      -...+++..+.+.||.|.++.+.+.|+.++.|...+|+...++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            223456777889999999999999999999999999999999999999999999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.4e-29  Score=228.00  Aligned_cols=295  Identities=21%  Similarity=0.229  Sum_probs=245.5

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  427 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  427 (882)
                      .+.||..++..+.|.. ++.+|.+++.|....+|-..+++.+.++.||.+.|.|++  ...+.+. +++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence            4678999999999987 888999999999999999999999999999999999999  6666666 99999999999999


Q ss_pred             CCCceEEeeeecccccEEEEEEccCCCcEEEEe----eCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782          428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  503 (882)
Q Consensus       428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  503 (882)
                      +.+|+++..+. ...+|..+.|+++|...+++.    +..+.|.++|++......   ....+......+.+.++.+.|+
T Consensus        81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeec
Confidence            99999998876 456899999999988444443    345789999998543211   1122334445567899999999


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCce-eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEE
Q 002782          504 PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  582 (882)
Q Consensus       504 ~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  582 (882)
                      |-+++|++|..||.|.+||+.++. .+..-+.|...|+.++++||..++++++.|.+-++||..+.++++++. -..+|+
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN  235 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN  235 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence            999999999999999999999984 455557799999999999999999999999999999999999999998 567999


Q ss_pred             EEEEEeCCCEEEEeecCCe--EE------------EEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          583 RASFLTRGAQIVSCGADGL--VK------------LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       583 ~~~~s~~g~~l~s~~~dg~--i~------------iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      +.+++|....++.|+....  |.            +|++-..+.+..+.+|-++|++++|+|+|+..++||.||.|++..
T Consensus       236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            9999998777777664322  22            222223345667789999999999999999999999999999986


Q ss_pred             CCC
Q 002782          649 DST  651 (882)
Q Consensus       649 ~~~  651 (882)
                      ...
T Consensus       316 Fd~  318 (327)
T KOG0643|consen  316 FDS  318 (327)
T ss_pred             ecc
Confidence            553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=7.1e-29  Score=267.84  Aligned_cols=279  Identities=29%  Similarity=0.500  Sum_probs=247.4

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee-eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      ...+.+..+.   ...+.+++.++.|.+|+..++..+.. +.||.+.|.++.  +...++ .+++|+.|.++++||..+|
T Consensus       208 ~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~~~~~~-~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  208 DHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--FPSGGD-KLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             cchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--EecCCC-EEEEEecCCcEEeEecCCC
Confidence            3444555543   67899999999999999999999888 999999999996  444344 4999999999999999999


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  511 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  511 (882)
                      .+...+.+|.+.+.++...+.   .+++|+.|.+|++|+++++.          ...+..+|..+|+++..+  +.++++
T Consensus       282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~--~~~lvs  346 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD--EPLLVS  346 (537)
T ss_pred             cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec--CCEEEE
Confidence            999999999999999998765   68889999999999998553          556666799999999998  789999


Q ss_pred             EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC
Q 002782          512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG  590 (882)
Q Consensus       512 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g  590 (882)
                      |+.|++|++||+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. +|+.++.+|..-+..+.+  .+
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~  423 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD  423 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence            999999999999999999999999999999988765 89999999999999999999 999999999998865554  57


Q ss_pred             CEEEEeecCCeEEEEEcCCCeeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHH
Q 002782          591 AQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE  657 (882)
Q Consensus       591 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  657 (882)
                      ++|++++.||.|++||..+++++..+.+ |...|+++++.  ...+++++.||.+.+||+.+++....
T Consensus       424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence            8999999999999999999999999998 67899999886  56799999999999999998876543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-29  Score=225.37  Aligned_cols=290  Identities=21%  Similarity=0.285  Sum_probs=238.2

Q ss_pred             eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782           55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG  134 (882)
Q Consensus        55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~  134 (882)
                      .+.||+.+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.||.+.|.|+..+.+.++|++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCcEEEEEEecCCCccEEEEE----eCCCcEEEEECC-------CCeEEEEecCcccceEEEEEccCCCEE
Q 002782          135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLL-------AKKCVATLDKHFSRVTSMAITSDGSTL  203 (882)
Q Consensus       135 ~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg----s~dg~I~vwd~~-------~~~~~~~l~~h~~~v~~l~~s~~~~~l  203 (882)
                      +++..++ ...+|..+.|+++++. .+++.    +..+.|.++|+.       +.++...+..+.+.++.+-|.|-+++|
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            9999988 5788999999998764 22222    234789999997       556788888899999999999999999


Q ss_pred             EEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782          204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  283 (882)
Q Consensus       204 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~  283 (882)
                      ++|..||.|..||++++.....                                                          
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~----------------------------------------------------------  184 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVD----------------------------------------------------------  184 (327)
T ss_pred             EEecCCCcEEEEEcccCceeee----------------------------------------------------------
Confidence            9999999999999987542210                                                          


Q ss_pred             ceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC
Q 002782          284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  363 (882)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (882)
                                                                                      ....|...|.++.+++
T Consensus       185 ----------------------------------------------------------------s~~~h~~~Ind~q~s~  200 (327)
T KOG0643|consen  185 ----------------------------------------------------------------SDEEHSSKINDLQFSR  200 (327)
T ss_pred             ----------------------------------------------------------------chhhhccccccccccC
Confidence                                                                            1112445677777776


Q ss_pred             CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe-E------------EEEeCCC
Q 002782          364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-V------------RLWDSES  430 (882)
Q Consensus       364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i------------~iwd~~~  430 (882)
                       +..++++++.|.+-++||..+..++.++.. ..++++.+  .+|-....++.|+.+-. |            ++|++-.
T Consensus       201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa--isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~  276 (327)
T KOG0643|consen  201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA--ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF  276 (327)
T ss_pred             -CcceEEecccCccceeeeccceeeEEEeee-ccccccee--cccccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence             788999999999999999999998887764 45778877  77877774444443321 1            1222222


Q ss_pred             ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782          431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG  473 (882)
Q Consensus       431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~  473 (882)
                      .+.+...++|-++|++++|+|+|. ..++|++||.|++..+..
T Consensus       277 eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  277 EEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             HHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEEecc
Confidence            334556789999999999999998 579999999999987654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.2e-28  Score=222.07  Aligned_cols=278  Identities=19%  Similarity=0.270  Sum_probs=244.3

Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee--eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  424 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  424 (882)
                      +...+|...+.+++|.. ++..++.++.++.+.+|++...+...  ...+|.+.|-.+.  +.|....++++++.|.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence            56678889999999987 88999999999999999998775543  3568888888877  7777777799999999999


Q ss_pred             EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      +||...+++........+.+ -+.|+|+|. +++.++.|..|.+.|......           .........++.++|+.
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~~~~-----------~~~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDARTYKI-----------VNEEQFKFEVNEISWNN  157 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecccce-----------eehhcccceeeeeeecC
Confidence            99999999988877655555 567899987 789999999999999876521           11222345678899998


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE
Q 002782          505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  584 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  584 (882)
                      ++.+++.....|+|.|...+..+++.+++.|.....||.|+|+|+++|+|+.|..+.+||++.--|++.+..+.-+|..+
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl  237 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL  237 (313)
T ss_pred             CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence            88888887778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782          585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  641 (882)
Q Consensus       585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  641 (882)
                      .|+.||++|++++.|..|-|=++.+|..+..++ ++++...++|+|...+||-++.|
T Consensus       238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999999999999997 88999999999999999987765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-29  Score=226.71  Aligned_cols=281  Identities=21%  Similarity=0.288  Sum_probs=235.6

Q ss_pred             EEEEEeCCCCcEEEEEE-------cCCcEEEEeCCCceeeeeee--CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782          357 LDLKFLGEEEQYLAVAT-------NIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  427 (882)
Q Consensus       357 ~~~~~~~~~~~~l~~~~-------~~~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  427 (882)
                      .++.|+|--++.|++++       ..|.+.|.++....-+....  .-.+.+..++  +++.....+++++.||++++||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence            56788887777777764       36889999986444444333  3456677777  6677666799999999999999


Q ss_pred             CCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-C
Q 002782          428 SES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N  505 (882)
Q Consensus       428 ~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  505 (882)
                      +.. ..++..++.|...|.++.|++..+..+++++.|++|++|+.....          ...++.+|...|...+|+| .
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------SVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----------ceEeecCCccEEEEEecCCCC
Confidence            653 457888999999999999999888788999999999999976542          5666888999999999999 5


Q ss_pred             CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEE
Q 002782          506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR  583 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~  583 (882)
                      .++++++|.|+++++||++.......+..|...+.++.|+. +...|+||+.|+.|++||++.- .++..+.+|.-.|..
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk  239 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK  239 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence            78999999999999999987655566999999999999997 5678999999999999999875 567889999999999


Q ss_pred             EEEEeCC-CEEEEeecCCeEEEEEcCCC-eeEEEeccCCCceEEEEEcC-CCCEEEEEeCCCCEEEEEC
Q 002782          584 ASFLTRG-AQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       584 ~~~s~~g-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw~~  649 (882)
                      +.|||.. ..|+|++.|-+++|||...+ .++.+.+.|..-|..+.||+ ++.++|+++-|+.+.||+-
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999964 57899999999999999855 46777788889999999987 5679999999999999973

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.1e-28  Score=221.18  Aligned_cols=234  Identities=16%  Similarity=0.267  Sum_probs=205.8

Q ss_pred             ecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeC
Q 002782          349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  428 (882)
Q Consensus       349 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  428 (882)
                      ..||.+.|-.+++.+.....+++++.+..|++||..++++........+.+...   ++|+|++ ++.++.|..|.+.|.
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~---wsp~g~~-~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT---WSPDGEY-IAVGNKDDRITFIDA  135 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE---EcCCCCE-EEEecCcccEEEEEe
Confidence            346777888899999999999999999999999999999998887766666655   8999998 999999999999999


Q ss_pred             CCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcE
Q 002782          429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  508 (882)
Q Consensus       429 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  508 (882)
                      .+.+.+...+ ....+..++|+.++. +++.....|+|.+...+.          +++...+.+|.....|+.|+|+|++
T Consensus       136 r~~~~~~~~~-~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps----------Lkpv~si~AH~snCicI~f~p~Gry  203 (313)
T KOG1407|consen  136 RTYKIVNEEQ-FKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS----------LKPVQSIKAHPSNCICIEFDPDGRY  203 (313)
T ss_pred             cccceeehhc-ccceeeeeeecCCCC-EEEEecCCceEEEEeccc----------cccccccccCCcceEEEEECCCCce
Confidence            9887665543 334677788886554 666667779999998764          4477788999999999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEe
Q 002782          509 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT  588 (882)
Q Consensus       509 la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~  588 (882)
                      +|+|+.|..+.+||++..-+.+.+..+.-+|..+.||.||++||+||.|..|-|=++++|..+..++ +.++...++|+|
T Consensus       204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 888999999999


Q ss_pred             CCCEEEEeecC
Q 002782          589 RGAQIVSCGAD  599 (882)
Q Consensus       589 ~g~~l~s~~~d  599 (882)
                      ...+|+-++.|
T Consensus       283 k~~LLAyA~dd  293 (313)
T KOG1407|consen  283 KRPLLAYACDD  293 (313)
T ss_pred             CCceeeEEecC
Confidence            99999888775

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.5e-28  Score=232.47  Aligned_cols=282  Identities=23%  Similarity=0.419  Sum_probs=237.8

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG---GLLATAGADRKVLVWDVDGGF  135 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~---~~lasg~~dg~v~vwd~~~~~  135 (882)
                      |.+.|.++...  +++|++|+.||.+++||. .|+....+.||.++|.++++.-.+   ..+++++.|.++++|-++.+.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            78899999888  789999999999999996 688999999999999988875433   359999999999999998764


Q ss_pred             E----EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-------------------------CCeEEEEecC
Q 002782          136 C----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-------------------------AKKCVATLDK  186 (882)
Q Consensus       136 ~----~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-------------------------~~~~~~~l~~  186 (882)
                      .    ++.-+||...|.++...+++.+  +++|+.|.+|++|+..                         ++.++.++.+
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr--~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTR--FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCe--EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            3    3344599999999999998876  9999999999999931                         1236778899


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceE
Q 002782          187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  266 (882)
Q Consensus       187 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (882)
                      |..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.....+.++...+..                       ..
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-----------------------~L  314 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-----------------------KL  314 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-----------------------ce
Confidence            999999999998 678999999999999999999988888777777777666543                       26


Q ss_pred             EEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeee
Q 002782          267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS  346 (882)
Q Consensus       267 ~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  346 (882)
                      +++++.+..+++||.+++.                                                        .....
T Consensus       315 l~~gssdr~irl~DPR~~~--------------------------------------------------------gs~v~  338 (423)
T KOG0313|consen  315 LASGSSDRHIRLWDPRTGD--------------------------------------------------------GSVVS  338 (423)
T ss_pred             eeecCCCCceeecCCCCCC--------------------------------------------------------CceeE
Confidence            7788888888888876540                                                        12234


Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce-eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  425 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  425 (882)
                      .++.||.+-|..+.++|.+..+|++++.|+.+++||+.+.. .++.+.+|.+.|.+++  +.. +.. +++|+.|.++++
T Consensus       339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd--W~~-~~~-IvSGGaD~~l~i  414 (423)
T KOG0313|consen  339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD--WNE-GGL-IVSGGADNKLRI  414 (423)
T ss_pred             EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe--ccC-Cce-EEeccCcceEEE
Confidence            56789999999999999999999999999999999999877 8999999999999998  443 344 999999999999


Q ss_pred             EeCC
Q 002782          426 WDSE  429 (882)
Q Consensus       426 wd~~  429 (882)
                      +...
T Consensus       415 ~~~~  418 (423)
T KOG0313|consen  415 FKGS  418 (423)
T ss_pred             eccc
Confidence            8643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.3e-27  Score=222.80  Aligned_cols=285  Identities=18%  Similarity=0.274  Sum_probs=238.3

Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEE
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR  424 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~  424 (882)
                      +.+......|.++.|.. ++.++++++.|..+++||..++.+..++..+.-.+..+.  +...... ++.++.  |.+||
T Consensus         8 k~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr   83 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR   83 (311)
T ss_pred             cccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence            34444678899999987 778888899999999999999999999998877777666  5566555 444444  88999


Q ss_pred             EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      ..++.+.+.++.+.+|...|.+++.+|-+. .+++++.|++|++||++...          +...+  +...-..++|.|
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l--~~~~~pi~AfDp  150 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLL--NLSGRPIAAFDP  150 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEE--ecCCCcceeECC
Confidence            999999999999999999999999999875 79999999999999998542          11111  223335689999


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCc--eeEEEEe---cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC
Q 002782          505 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  579 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  579 (882)
                      .|-++|++.....|++||++..  .+..++.   +.....+.+.|||||++|+.+...+.+++.|.-+|..+.++.++.+
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN  230 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence            9999999998889999999864  3444443   3467789999999999999999999999999999999999988765


Q ss_pred             CE---EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          580 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       580 ~v---~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      .-   ...+|+||++++++|+.||.|.+|++++|..+..+.+ +.+++.++.|+|.-.+++|++  ..+.+|-..
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            43   6789999999999999999999999999999999998 689999999999887777775  558888544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9.6e-28  Score=259.09  Aligned_cols=276  Identities=29%  Similarity=0.539  Sum_probs=245.5

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT  137 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~  137 (882)
                      +...+++..|.  ..++++++.+.+|++||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..+|.|+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678999998  56799999999999999999999988 9999999999999988889999999999999999999999


Q ss_pred             EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                      +.+.+|.+.|.++...+    .++++|+.|.+|++|++.++.++..+.+|.++|.++..+  +.++++|+.|++|++|++
T Consensus       285 ~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             EEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence            99999999999998865    348889999999999999999999999999999999997  789999999999999998


Q ss_pred             CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782          218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS  297 (882)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~  297 (882)
                      .+++++.                                                                         
T Consensus       359 ~~~~cl~-------------------------------------------------------------------------  365 (537)
T KOG0274|consen  359 RTGKCLK-------------------------------------------------------------------------  365 (537)
T ss_pred             hhceeee-------------------------------------------------------------------------
Confidence            7655443                                                                         


Q ss_pred             eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782          298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ  377 (882)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  377 (882)
                                                                        .+.||...|.++.+.+.  ..++.|+.|+.
T Consensus       366 --------------------------------------------------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~  393 (537)
T KOG0274|consen  366 --------------------------------------------------SLSGHTGRVYSLIVDSE--NRLLSGSLDTT  393 (537)
T ss_pred             --------------------------------------------------eecCCcceEEEEEecCc--ceEEeeeeccc
Confidence                                                              34457777777766432  89999999999


Q ss_pred             EEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCc
Q 002782          378 VQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQN  455 (882)
Q Consensus       378 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~  455 (882)
                      |++||+.+. +++..+.+|...+..+.    ..++. +++++.|++|++||..++.++..+.+ |.+.|+++++.   ..
T Consensus       394 IkvWdl~~~~~c~~tl~~h~~~v~~l~----~~~~~-Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~  465 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQGHTSLVSSLL----LRDNF-LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KE  465 (537)
T ss_pred             eEeecCCchhhhhhhhcCCcccccccc----cccce-eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cc
Confidence            999999999 99999999999997765    44555 99999999999999999999999998 77899999887   23


Q ss_pred             EEEEeeCCCeEEEEecCCCC
Q 002782          456 FLVSGSSDHTIKVWSFDGLS  475 (882)
Q Consensus       456 ~l~s~~~dg~i~~wd~~~~~  475 (882)
                      .+++++.|+++++||++...
T Consensus       466 ~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  466 EILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             eEEEEecCCeeEEEecccCc
Confidence            68999999999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.9e-28  Score=240.99  Aligned_cols=283  Identities=19%  Similarity=0.339  Sum_probs=248.3

Q ss_pred             cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782          303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  382 (882)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  382 (882)
                      ....+.+++++|....-++++..-.+.+|+....       ...+.+..+...+.++.|.. ++.++++|...|.|++||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchh-------hhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEec
Confidence            4467899999999999999999999999987643       23344555677888899877 899999999999999999


Q ss_pred             CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782          383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  462 (882)
Q Consensus       383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~  462 (882)
                      ..+....+.+.+|+.++..+.  |.|.++.++++|++|+.+++||+.+......+.+|+..|.|.+++|....++++||.
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             cccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence            888888889999999999998  889999889999999999999999999877899999999999999998889999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEE
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWS  541 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~  541 (882)
                      ||+|++||.....          .......|+.+|..+.+-|.|.++|+++. ..|++||+.+| +.+..+..|...|+|
T Consensus       175 Dg~vrl~DtR~~~----------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTc  243 (487)
T KOG0310|consen  175 DGKVRLWDTRSLT----------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTC  243 (487)
T ss_pred             CceEEEEEeccCC----------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEE
Confidence            9999999998642          23334569999999999999999999874 67999999955 444455559999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       542 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      +++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+-+.
T Consensus       244 L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  244 LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             EEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            9999999999999999999999999999998887 7789999999999999999999998877644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-28  Score=251.67  Aligned_cols=282  Identities=25%  Similarity=0.407  Sum_probs=239.6

Q ss_pred             cccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002782           17 QQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR   96 (882)
Q Consensus        17 ~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~   96 (882)
                      ..||. .-+.|| ..+.||++.+..|++|+..+++.......+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.++
T Consensus       176 dDfY~-nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  176 DDFYL-NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             ccHhh-hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            34443 457788 5668999999999999999999777777678999999999999999999999999999999999999


Q ss_pred             Eeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782           97 SWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus        97 ~~~~-h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      .+.+ |...|-+++|.  +..+.+|+.|+.|..+|+........ +.+|...|..+.|++|+..  +++|+.|+.+.|||
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LASGGNDNVVFIWD  329 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--eccCCCccceEecc
Confidence            9999 99999999999  66799999999999999987765555 8899999999999998776  99999999999999


Q ss_pred             CCCCeEEEEecCcccceEEEEEcc-CCCEEEEEe--CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782          175 LLAKKCVATLDKHFSRVTSMAITS-DGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY  251 (882)
Q Consensus       175 ~~~~~~~~~l~~h~~~v~~l~~s~-~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (882)
                      .....+...+..|.+.|.+++|+| ....|++|+  .|+.|++||..++..+..+...                      
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg----------------------  387 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG----------------------  387 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC----------------------
Confidence            999999999999999999999999 455777775  6889999998776655444333                      


Q ss_pred             hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782          252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY  331 (882)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  331 (882)
                                                                                                      
T Consensus       388 --------------------------------------------------------------------------------  387 (484)
T KOG0305|consen  388 --------------------------------------------------------------------------------  387 (484)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE-EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC
Q 002782          332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG  410 (882)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  410 (882)
                                            ..|..+.|++...+++.+ |...+.|.||+..+.+.+..+.+|...|..++  .+|+|
T Consensus       388 ----------------------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la--~SPdg  443 (484)
T KOG0305|consen  388 ----------------------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA--LSPDG  443 (484)
T ss_pred             ----------------------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE--ECCCC
Confidence                                  334445554444334333 44567899999999999999999999999999  99999


Q ss_pred             CEEEEEeecCCeEEEEeCCCc
Q 002782          411 KILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       411 ~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      .. +++|+.|.++++|++-..
T Consensus       444 ~~-i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  444 ET-IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CE-EEEecccCcEEeccccCC
Confidence            98 999999999999997654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=228.91  Aligned_cols=201  Identities=24%  Similarity=0.494  Sum_probs=175.4

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCC------------------CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSN------------------ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI   84 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~------------------~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i   84 (882)
                      +.+|||||.++|+|+.+ .|.|+|++.                  ...+++|-.|.++|+++.|+|....|++|+.|++|
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv  196 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV  196 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence            78899999999999988 899999861                  13567888899999999999999999999999999


Q ss_pred             EEEECCCCeeEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCCCcc
Q 002782           85 RVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKS  159 (882)
Q Consensus        85 ~iwd~~~~~~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~---~~h~~~V~~l~f~~~~~~~  159 (882)
                      ++||+......+-++.  ...+|.++.|+|.|.+|+.|....++++||+.+-+|...-   .+|.+.|+++.+++.++  
T Consensus       197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--  274 (430)
T KOG0640|consen  197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--  274 (430)
T ss_pred             EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--
Confidence            9999976544433332  3579999999999999999999999999999998876553   36999999999999765  


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEe-cCccc-ceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782          160 LLFSGSDDATVRVWDLLAKKCVATL-DKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV  226 (882)
Q Consensus       160 ~l~sgs~dg~I~vwd~~~~~~~~~l-~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  226 (882)
                      +.++|+.||.|++||--+++|+.++ ..|.+ .|.+..|+.+|+++++.|.|..+++|.+.+++.+...
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            4999999999999999999999988 44654 8999999999999999999999999999988876654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-27  Score=247.03  Aligned_cols=271  Identities=21%  Similarity=0.370  Sum_probs=241.6

Q ss_pred             CCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-cccc
Q 002782          365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGA  443 (882)
Q Consensus       365 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~  443 (882)
                      ..+.+++|.. ..+++|+..++........+...|+++.  +.++|.. |++|..+|.|.|||..+.+.+..+.+ |...
T Consensus       187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r  262 (484)
T KOG0305|consen  187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASR  262 (484)
T ss_pred             cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCce
Confidence            3456777665 7899999999997777777789999999  8899998 99999999999999999988888888 9999


Q ss_pred             EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      |.+++|...   .+.+|+.|+.|..+|++....         ......+|...|..+.|++|++++|+|+.|+.+.|||.
T Consensus       263 vg~laW~~~---~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  263 VGSLAWNSS---VLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             eEEEeccCc---eEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            999999943   799999999999999986532         22247889999999999999999999999999999999


Q ss_pred             CCceeEEEEecccCceEEEEEcC-CCCEEEEee--CCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEee--c
Q 002782          524 PDLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--A  598 (882)
Q Consensus       524 ~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~  598 (882)
                      ....+...+..|...|.+++|+| ...+||+|+  .|+.|++||..+|.++..+. -...|..+.|++..+.|+++.  .
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence            88899999999999999999999 456888875  59999999999999998886 557899999999988777654  3


Q ss_pred             CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      ++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.++++|++-+.
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            678999999999999999999999999999999999999999999999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=257.89  Aligned_cols=260  Identities=24%  Similarity=0.367  Sum_probs=213.0

Q ss_pred             eeeeec-CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------------------------
Q 002782           52 IKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLST---------------------------------------   91 (882)
Q Consensus        52 ~~~~l~-~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~---------------------------------------   91 (882)
                      ..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+..                                       
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334555 7999999999999999999999999999998753                                       


Q ss_pred             ---------------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 002782           92 ---------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI  150 (882)
Q Consensus        92 ---------------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l  150 (882)
                                           .++++.+.||.+.|..+.||.++ +|.+++.|.+|++|++....|+..|. |..-|+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence                                 12344578999999999999875 89999999999999999999999998 99999999


Q ss_pred             EEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782          151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       151 ~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      +|+|..+ .++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+.........
T Consensus       416 aFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  416 AFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             EecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            9999854 58999999999999999887766544444 789999999999999999999999999987765443221100


Q ss_pred             eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEE
Q 002782          231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA  310 (882)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (882)
                                                                                                      
T Consensus       494 --------------------------------------------------------------------------------  493 (712)
T KOG0283|consen  494 --------------------------------------------------------------------------------  493 (712)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee
Q 002782          311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY  390 (882)
Q Consensus       311 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~  390 (882)
                                                       ...+ ...+. .|+.+-|.|.+...+++.++|..|+|||..+...+.
T Consensus       494 ---------------------------------~~~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~  538 (712)
T KOG0283|consen  494 ---------------------------------HNKK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH  538 (712)
T ss_pred             ---------------------------------ccCc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence                                             0000 01122 688888888777789999999999999999888888


Q ss_pred             eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      .+.|+...-..+...++.+|++ |++++.|..|++|++...
T Consensus       539 KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  539 KFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             hhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence            8888766555555558889998 999999999999998643

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.6e-26  Score=249.90  Aligned_cols=218  Identities=22%  Similarity=0.321  Sum_probs=176.3

Q ss_pred             CCCCcccccccccccccccccCC-ceEEccCCCEEEEEeCC-eEEEEEcCCCce----------e---eeecCCCccEEE
Q 002782            1 MASLPLKKSYGCEPVLQQFYGGG-PLVVSSDGSFIACACGE-SINIVDLSNASI----------K---STIEGGSDTITA   65 (882)
Q Consensus         1 m~~~~l~~~~~~~~~~~~~y~g~-~va~s~dg~~la~~~~~-~I~i~d~~~~~~----------~---~~l~~~~~~I~~   65 (882)
                      |....++-.|.....-+..|.+- ....++|+..++++... ....|+...+..          .   ..+.||.+.|++
T Consensus         1 ~~~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~   80 (493)
T PTZ00421          1 MSVSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIID   80 (493)
T ss_pred             CCcccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEE
Confidence            66666777777777777777653 45566675444444433 444565443322          1   247789999999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE
Q 002782           66 LALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFC  136 (882)
Q Consensus        66 l~~sp-d~~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~-~~lasg~~dg~v~vwd~~~~~~  136 (882)
                      ++|+| ++++||+|+.|++|++||+.++       .++..+.+|...|.+++|+|++ .+|++|+.|++|+|||+.++..
T Consensus        81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~  160 (493)
T PTZ00421         81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA  160 (493)
T ss_pred             EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence            99999 8899999999999999999765       3577889999999999999986 6999999999999999999999


Q ss_pred             EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccc-eEEEEEccCCCEEEEEe----CCCe
Q 002782          137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGSTLISAG----RDKV  211 (882)
Q Consensus       137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~-v~~l~~s~~~~~l~s~~----~dg~  211 (882)
                      +..+.+|...|.+++|+|++..  |++++.|+.|++||+.+++.+..+.+|.+. +..+.|.+++..+++++    .|+.
T Consensus       161 ~~~l~~h~~~V~sla~spdG~l--Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        161 VEVIKCHSDQITSLEWNLDGSL--LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             EEEEcCCCCceEEEEEECCCCE--EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence            9999999999999999998764  999999999999999999999999999764 45678899888888765    4688


Q ss_pred             EEEEecCCc
Q 002782          212 VNLWDLRDY  220 (882)
Q Consensus       212 i~vwd~~~~  220 (882)
                      |++||++..
T Consensus       239 VklWDlr~~  247 (493)
T PTZ00421        239 IMLWDTRKM  247 (493)
T ss_pred             EEEEeCCCC
Confidence            999987643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-28  Score=221.29  Aligned_cols=268  Identities=22%  Similarity=0.383  Sum_probs=226.7

Q ss_pred             EeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-CceeeeeeeCCCcceEE
Q 002782          323 TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLC  401 (882)
Q Consensus       323 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~  401 (882)
                      ..+|.+.+.+....+    .+ ....--...+.+.+++|++..++.+++++.||.+++||+. ...++..++.|...|.+
T Consensus        35 ~G~G~L~ile~~~~~----gi-~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S  109 (311)
T KOG0277|consen   35 AGNGRLFILEVTDPK----GI-QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS  109 (311)
T ss_pred             ccCceEEEEecCCCC----Ce-EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence            346777777765221    11 1111223457789999999999999999999999999965 34567788999999999


Q ss_pred             eeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782          402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  481 (882)
Q Consensus       402 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  481 (882)
                      ++  +.+..+..+++++.|++|++|+...+..+.++.+|..-|...+|+|..++++++++.|+++++||++...      
T Consensus       110 vd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------  181 (311)
T KOG0277|consen  110 VD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------  181 (311)
T ss_pred             ec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------
Confidence            99  7777777789999999999999999999999999999999999999999999999999999999987542      


Q ss_pred             ccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCC
Q 002782          482 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDK  558 (882)
Q Consensus       482 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~  558 (882)
                          ....+..|...|.|+.|+. +...++||+.|+.|+.||++.. .++..+.+|.-.|..+.|||.. .+|++++.|-
T Consensus       182 ----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  182 ----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             ----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence                2223678999999999998 6688999999999999999875 5678899999999999999964 5899999999


Q ss_pred             cEEEEecCCC-ceeeEeecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEc
Q 002782          559 TIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       559 ~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~  607 (882)
                      ++||||...+ .++.+...|+.-+..+.|++ ++.++++++-|+.++||+.
T Consensus       258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999998744 56777888999999999986 6779999999999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=6.4e-29  Score=239.96  Aligned_cols=282  Identities=23%  Similarity=0.326  Sum_probs=242.4

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  425 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  425 (882)
                      .+..|.+++.++.|.+ +...|++|+.|..|.+|+....+  ...++.|..+.++.++  +.++++. +++++.|+.+++
T Consensus       170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~  245 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL  245 (459)
T ss_pred             hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence            4456778888999987 66799999999999999988766  6678889999999999  8899988 888899999999


Q ss_pred             EeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782          426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  505 (882)
Q Consensus       426 wd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  505 (882)
                      |++...+...++.+|...|+++.|..... .+++|+.|.+|+.||+....          +... .-....++.|+.+  
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~----------C~kt-~l~~S~cnDI~~~--  311 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY----------CSKT-VLPGSQCNDIVCS--  311 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh----------eecc-ccccccccceEec--
Confidence            99999999999999999999999987755 49999999999999998532          1111 1123345555555  


Q ss_pred             CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc----CCE
Q 002782          506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT----SSV  581 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----~~v  581 (882)
                      +..+++|-.|++|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+.+......+....    ...
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            5678899999999999999999999988766 89999999999999999999999999999998888776422    348


Q ss_pred             EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC--ceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782          582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      +.+.|||++.|+++||.||.|+||++.++++...+.....  .|+++.|+|.|..|++++.++.+.+|.
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            8899999999999999999999999999999988875444  599999999999999999999999993

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=234.20  Aligned_cols=288  Identities=28%  Similarity=0.410  Sum_probs=225.5

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----E-------------e-ecCCCCEEEEEEcCCC
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR----S-------------W-KGHDGPAIGMACHPSG  114 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~----~-------------~-~~h~~~V~~l~fs~~~  114 (882)
                      ...+..|.-+|+|++++||++++++++.+++|.=|++.+|+..+    +             - ++|...|.+++.|+||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45667899999999999999999999999999999998876331    1             1 3688899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEE
Q 002782          115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM  194 (882)
Q Consensus       115 ~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l  194 (882)
                      +|||+|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....  +++++.|+.|++|+++....+.++.+|.+.|.++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~--lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE--LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc--eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            99999999999999999999999999999999999999876666  9999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782          195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  274 (882)
Q Consensus       195 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  274 (882)
                      ....-++.+-+|++|+++++|++.....+...+....+.+++++.                                   
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-----------------------------------  337 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-----------------------------------  337 (479)
T ss_pred             chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-----------------------------------
Confidence            998888877788899999999986544443333333444444433                                   


Q ss_pred             eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782          275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  354 (882)
Q Consensus       275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (882)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (479)
T KOG0299|consen  338 --------------------------------------------------------------------------------  337 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee------------CCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------------GHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                                 +.++++|+.+|.|.+|++...+++.+..            .+...|++++  ..|..+. +++|+.+|.
T Consensus       338 -----------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla--~i~~sdL-~asGS~~G~  403 (479)
T KOG0299|consen  338 -----------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA--VIPGSDL-LASGSWSGC  403 (479)
T ss_pred             -----------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE--ecccCce-EEecCCCCc
Confidence                       3344444444555555544444333221            1123677777  6676665 999999999


Q ss_pred             EEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782          423 VRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  472 (882)
Q Consensus       423 i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~  472 (882)
                      |++|-+..+    .++..+. -.+.|++++|+++|..+++..+....+--|-..
T Consensus       404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            999998877    3333443 668899999999999767777777766666544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-26  Score=215.18  Aligned_cols=293  Identities=23%  Similarity=0.340  Sum_probs=238.6

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEE
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWD  130 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~--dg~v~vwd  130 (882)
                      .+.+......|+++.|+++|.+|++++.|.+|++||..+++.++++..++-.|..++|......++.++.  |.+|+.-+
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3445555778999999999999999999999999999999999999988889999999888777777775  89999999


Q ss_pred             CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782          131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      +.+.+.++.|.||...|..++.+|-++.  +++++.|++|++||++..+|...+.....+  ..+|.|+|-+++++...+
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~--FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDT--FLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE  162 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCe--EEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence            9999999999999999999999998765  999999999999999998888777544333  468999999999998888


Q ss_pred             eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782          211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  290 (882)
Q Consensus       211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~  290 (882)
                      .|++||++....-                                                                   
T Consensus       163 ~IkLyD~Rs~dkg-------------------------------------------------------------------  175 (311)
T KOG1446|consen  163 LIKLYDLRSFDKG-------------------------------------------------------------------  175 (311)
T ss_pred             eEEEEEecccCCC-------------------------------------------------------------------
Confidence            9999998754210                                                                   


Q ss_pred             CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782          291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA  370 (882)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  370 (882)
                                     ++...                                    ....+...+...+.|++ +++.+.
T Consensus       176 ---------------PF~tf------------------------------------~i~~~~~~ew~~l~FS~-dGK~iL  203 (311)
T KOG1446|consen  176 ---------------PFTTF------------------------------------SITDNDEAEWTDLEFSP-DGKSIL  203 (311)
T ss_pred             ---------------CceeE------------------------------------ccCCCCccceeeeEEcC-CCCEEE
Confidence                           00000                                    00001234566777877 788888


Q ss_pred             EEEcCCcEEEEeCCCceeeeeeeCCCcce-EEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEE
Q 002782          371 VATNIEQVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVA  448 (882)
Q Consensus       371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~  448 (882)
                      .+++.+.+.+.|.-+|.....+.++...- ..+..++.|+++. +++|+.||+|.+|+++++..+..+.+ +.+++.++.
T Consensus       204 lsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~  282 (311)
T KOG1446|consen  204 LSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR  282 (311)
T ss_pred             EEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence            88888999999999999888888765543 2255558899997 99999999999999999999999888 799999999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEecC
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSFD  472 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~~  472 (882)
                      |+|...   .-.+.+..+.+|-..
T Consensus       283 fnP~~~---mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  283 FNPRYA---MFVSASSNLVFWLPD  303 (311)
T ss_pred             cCCcee---eeeecCceEEEEecc
Confidence            999843   344455678888654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.6e-27  Score=257.20  Aligned_cols=293  Identities=20%  Similarity=0.315  Sum_probs=230.2

Q ss_pred             CCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 002782           59 GSDTITALALSPDDKLLFSSG--HSREIRVWDLST------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR  124 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~--~dg~i~iwd~~~------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg  124 (882)
                      +...|.++..+|||..+|+|+  .|+.++||+...            .+.+.+...|.+.|.|+.|+|||++||+|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456799999999999999999  899999998742            345667788999999999999999999999999


Q ss_pred             cEEEEECCC------------------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC
Q 002782          125 KVLVWDVDG------------------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK  186 (882)
Q Consensus       125 ~v~vwd~~~------------------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~  186 (882)
                      .|.||+...                  .++...+.+|.+.|..++|+|++.  +|++++.|++|.+||..+.+++..+.+
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccceeeeeeec
Confidence            999999862                  146778999999999999999765  599999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceE
Q 002782          187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  266 (882)
Q Consensus       187 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (882)
                      |.+.|..+.|.|-|+|+++-+.|++|++|++.+....+.+..+..                                   
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-----------------------------------  214 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-----------------------------------  214 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----------------------------------
Confidence            999999999999999999999999999999766544433321100                                   


Q ss_pred             EEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeee
Q 002782          267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS  346 (882)
Q Consensus       267 ~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  346 (882)
                                                       ....                                           
T Consensus       215 ---------------------------------~~~~-------------------------------------------  218 (942)
T KOG0973|consen  215 ---------------------------------ESPL-------------------------------------------  218 (942)
T ss_pred             ---------------------------------hCCC-------------------------------------------
Confidence                                             0000                                           


Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee----cCCe
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----KDNS  422 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----~dg~  422 (882)
                                                                       .....-+.  |+|+|.+ |++..    .-.+
T Consensus       219 -------------------------------------------------~T~f~RlS--WSPDG~~-las~nA~n~~~~~  246 (942)
T KOG0973|consen  219 -------------------------------------------------TTFFLRLS--WSPDGHH-LASPNAVNGGKST  246 (942)
T ss_pred             -------------------------------------------------cceeeecc--cCCCcCe-ecchhhccCCcce
Confidence                                                             00011112  5566655 33321    2235


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccC--------CC--------cEEEEeeCCCeEEEEecCCCCCCCCCcccccc
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKK--------LQ--------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA  486 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--------~~--------~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  486 (882)
                      +.|.+-.+.+.-..+-+|.+++.++.|+|.        |.        .++++|+.|++|.||......+         .
T Consensus       247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP---------l  317 (942)
T KOG0973|consen  247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP---------L  317 (942)
T ss_pred             eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc---------h
Confidence            667777677777778899999999999872        11        1789999999999999754321         2


Q ss_pred             hhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC
Q 002782          487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       487 ~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~  525 (882)
                      .....-....|..++|+|||..|.++|.||+|.++.++.
T Consensus       318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            233344567899999999999999999999999998753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.2e-27  Score=244.08  Aligned_cols=282  Identities=23%  Similarity=0.366  Sum_probs=244.8

Q ss_pred             eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--eeeeCCCcceEE-eeeeeecCCCEEEEEeec
Q 002782          343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLC-LDTCALSSGKILIVTGSK  419 (882)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~~  419 (882)
                      ..+...+.||...+..++..  ++..++.++.||++++|+-......  ..+.+|.+.+.+ +.  +.+..+..+++|+.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC--YAESDKGRLVVGGM   79 (745)
T ss_pred             ceeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccce--eccccCcceEeecc
Confidence            45667888999999888876  4458999999999999998665543  356677777766 43  44444444999999


Q ss_pred             CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782          420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  499 (882)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (882)
                      |+.+.+|...+..++..+.+|.+.|.++....++.  +++||.|.++++|....            ......+|...|.+
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWA  145 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheee
Confidence            99999999999999999999999999999887764  89999999999998764            44457899999999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC
Q 002782          500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  579 (882)
Q Consensus       500 ~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  579 (882)
                      ++.-|++ .+++||.|++|++|.-  ++.+.+|.+|..-|..+++-+++ .+++++.||.|++|++ +|+++..+.||++
T Consensus       146 v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn  220 (745)
T KOG0301|consen  146 VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN  220 (745)
T ss_pred             eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce
Confidence            9999988 8899999999999975  77899999999999999999754 5788999999999999 8999999999999


Q ss_pred             CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       580 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      -|.++....++..++++++|++++||+..  +|.+.+..+...||++.+-++|. +++|+.||.|+||...
T Consensus       221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            99999988888999999999999999865  89999986677999999998886 7889999999999876

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.96  E-value=4.4e-29  Score=216.53  Aligned_cols=136  Identities=38%  Similarity=0.802  Sum_probs=128.7

Q ss_pred             cchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHH---hcch--hHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcch
Q 002782          669 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVC---RKRE--AELQIEKALHALGKEEIRQLLEYVREWNTKPKLC  743 (882)
Q Consensus       669 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~---~~~~--~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~  743 (882)
                      +|++.|++..++|.+|+.+|+++++|.+++.+++.++   .+.+  ....++.++..|+.+++.+||+|+++||||+|+|
T Consensus         1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~   80 (141)
T PF08625_consen    1 EQELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS   80 (141)
T ss_pred             CchHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH
Confidence            5789999999999999999999999999999999998   3222  2467999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccC
Q 002782          744 HVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS  804 (882)
Q Consensus       744 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  804 (882)
                      ++||.+|+.||+.|+++++.++|++.++|++|+||++|||+|+++|+|++|+|||++.+|+
T Consensus        81 ~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~syllDy~l~~M~  141 (141)
T PF08625_consen   81 HVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKSYLLDYTLQQMD  141 (141)
T ss_pred             HHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999995

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.4e-28  Score=237.67  Aligned_cols=289  Identities=24%  Similarity=0.353  Sum_probs=236.6

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcE
Q 002782           93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV  170 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I  170 (882)
                      +....+..|.+.+..+.|-++...|++|+.|..|++|++..++  ...++.|..+.|+.+.|.+++..  +++.+.|+.+
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~--~iAas~d~~~  243 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH--VIAASNDKNL  243 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce--EEeecCCCce
Confidence            4455677899999999999999999999999999999998776  66778889999999999998765  9999999999


Q ss_pred             EEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccccc
Q 002782          171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS  250 (882)
Q Consensus       171 ~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (882)
                      ++|++.+.+...++.+|...|+++.|......+++|+.|.+|+.||+....+.+++-..+                    
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--------------------  303 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--------------------  303 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--------------------
Confidence            999999999999999999999999999887779999999999999997644433211000                    


Q ss_pred             chhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEE
Q 002782          251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL  330 (882)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  330 (882)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (459)
T KOG0288|consen  304 --------------------------------------------------------------------------------  303 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC
Q 002782          331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG  410 (882)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  410 (882)
                                                                                         .+..+.  ..   
T Consensus       304 -------------------------------------------------------------------~cnDI~--~~---  311 (459)
T KOG0288|consen  304 -------------------------------------------------------------------QCNDIV--CS---  311 (459)
T ss_pred             -------------------------------------------------------------------cccceE--ec---
Confidence                                                                               000000  11   


Q ss_pred             CEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh
Q 002782          411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  490 (882)
Q Consensus       411 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  490 (882)
                      ...+++|..|+.||+||..+..+......+. .|+++..++++. -+.+++.|.++.+.|+.+..-..    ........
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~----~~sA~g~k  385 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQ----TFSAEGFK  385 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccEEE----Eeeccccc
Confidence            1137888889999999999999888887776 999999999987 46777999999999998653100    11111111


Q ss_pred             hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC--ceEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782          491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIW  563 (882)
Q Consensus       491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~d~~i~iw  563 (882)
                        ...+.+.+.|||++.|+|+||.||.|+||++.++++...+.....  .|+++.|+|.|..|++++.++.+.+|
T Consensus       386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence              234589999999999999999999999999999999888876544  59999999999999999999999999

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.4e-28  Score=233.55  Aligned_cols=290  Identities=22%  Similarity=0.406  Sum_probs=229.2

Q ss_pred             EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782          137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  216 (882)
Q Consensus       137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd  216 (882)
                      +..+.||...|.+++=+|.. ...+++|+.||.|++||+.+..++.++..|.+.|.+++++.  ..++++|.|++|+.|.
T Consensus        59 v~~L~gHrdGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hhhccccccccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            34568999999999999973 34599999999999999999999999999999999999987  6788999999999998


Q ss_pred             cCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee
Q 002782          217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  296 (882)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~  296 (882)
                      +... ...++.                                                                     
T Consensus       136 ~~~~-p~~til---------------------------------------------------------------------  145 (433)
T KOG0268|consen  136 IDGP-PLHTIL---------------------------------------------------------------------  145 (433)
T ss_pred             ccCC-cceeee---------------------------------------------------------------------
Confidence            6531 000000                                                                     


Q ss_pred             eeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCC
Q 002782          297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  376 (882)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  376 (882)
                                                                                                     |
T Consensus       146 -------------------------------------------------------------------------------g  146 (433)
T KOG0268|consen  146 -------------------------------------------------------------------------------G  146 (433)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcE
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  456 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~  456 (882)
                                         ...+..++  ....+.. +++++.  .|.|||.....++..+.-....|.++.|+|....+
T Consensus       147 -------------------~s~~~gId--h~~~~~~-FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  147 -------------------KSVYLGID--HHRKNSV-FATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             -------------------cccccccc--ccccccc-ccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence                               00011111  1122222 677655  48899999888888888888899999999998889


Q ss_pred             EEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecc
Q 002782          457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH  535 (882)
Q Consensus       457 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h  535 (882)
                      |++++.|+.|.+||+.......         .+  ...-.-+.++|+|++-.+++|+.|..++.||++.. .++....+|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~---------KV--i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLK---------KV--ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             eeeeccCCceEEEecccCCccc---------ee--eeeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence            9999999999999998763211         00  11224478999999999999999999999999876 567788899


Q ss_pred             cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec-CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                      .+.|.+++|||.|+-+++||.|.+|+||....+.....+.. ....|.++.||.|.+|+++||.|+.|++|.....+.+
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            99999999999999999999999999999987755443321 2256899999999999999999999999987654433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.9e-27  Score=233.54  Aligned_cols=214  Identities=15%  Similarity=0.219  Sum_probs=174.3

Q ss_pred             eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC
Q 002782          437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  516 (882)
Q Consensus       437 ~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg  516 (882)
                      ..+|...+++.+|+|.....+++++.||++++|++.......    .........+..-++++++|+|+|++||+|+.||
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~----qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL----QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe----eEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence            458999999999999999999999999999999998653211    0001111223445789999999999999999999


Q ss_pred             cEEEEeCCCcee---EEEEecccC--ceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCc--CCEEEEEEEe
Q 002782          517 TACVWRLPDLVS---VVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHT--SSVLRASFLT  588 (882)
Q Consensus       517 ~i~iwd~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~--~~v~~~~~s~  588 (882)
                      .|.+|+..+...   ...-..|..  .|+||.||+||++|++-+.|+++++||++.. +++....+-.  -+-+.++|||
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP  419 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP  419 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence            999999855422   223345776  8999999999999999999999999999875 5666655432  3557799999


Q ss_pred             CCCEEEEeec------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          589 RGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       589 ~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      +.+.|++|..      .|.+.+||..+.+.++.+.-....|..+.|+|--+.|+.|+.||.+++|-..+...
T Consensus       420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~  491 (641)
T KOG0772|consen  420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESI  491 (641)
T ss_pred             CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccccc
Confidence            9999999865      47899999999999999988888899999999999999999999999998776544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=4.2e-27  Score=228.70  Aligned_cols=282  Identities=20%  Similarity=0.275  Sum_probs=244.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEE
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  434 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  434 (882)
                      .+..+...+. ...+.+|+.|..+.++|..+.+.+..+.||...|..+.  ++++... +++++.|..|++|........
T Consensus       221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~~-v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLDT-VITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchhh-eeecCCcceEEeeccccccCc
Confidence            3445555554 67899999999999999999999999999999999998  8888776 999999999999999888888


Q ss_pred             eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC
Q 002782          435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  514 (882)
Q Consensus       435 ~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~  514 (882)
                      .....|..+|+.+..+|.|. +|++++.||+..+.|+.++..       + .........-.+++.+|+|||.++.+|+.
T Consensus       297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~-------l-t~vs~~~s~v~~ts~~fHpDgLifgtgt~  367 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ-------L-TVVSDETSDVEYTSAAFHPDGLIFGTGTP  367 (506)
T ss_pred             cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE-------E-EEEeeccccceeEEeeEcCCceEEeccCC
Confidence            88889999999999999988 899999999999999987631       0 11111122345899999999999999999


Q ss_pred             CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEE
Q 002782          515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQI  593 (882)
Q Consensus       515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l  593 (882)
                      ||.++|||+.+......|.+|.++|.++.|+.+|-+|++++.|+.|++||++.-+..+++.-.. ..+..+.|.+.|.+|
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL  447 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence            9999999999999999999999999999999999999999999999999999888888776433 369999999999999


Q ss_pred             EEeecCCeEEEEEcC--CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          594 VSCGADGLVKLWTVR--TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       594 ~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      +.++.|=.|++++-.  +..++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus       448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999887666666633  56788888889999999999999999999999999988754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.3e-28  Score=228.68  Aligned_cols=291  Identities=16%  Similarity=0.274  Sum_probs=234.0

Q ss_pred             eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      .+....+.||.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|..+.  +..  .. ++++++|.+
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKt  130 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKT  130 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcc
Confidence            3455667899999999999987778999999999999999999999999999999999997  333  44 889999999


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      |+.|-+... ++.++.+ .+.+..+.-+..+. .++++|+  .|.+||.....          +...+.-....|.++.|
T Consensus       131 vK~wk~~~~-p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~----------Pv~smswG~Dti~svkf  195 (433)
T KOG0268|consen  131 VKQWKIDGP-PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN----------PVSSMSWGADSISSVKF  195 (433)
T ss_pred             eeeeeccCC-cceeeec-cccccccccccccc-cccccCc--eeeecccccCC----------ccceeecCCCceeEEec
Confidence            999987763 3333332 23444555444433 6788876  48999986432          22333334457899999


Q ss_pred             cCCC-cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCC
Q 002782          503 APND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSS  580 (882)
Q Consensus       503 s~~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~  580 (882)
                      +|.. .+|+++..|+.|.+||++.+.++..+. -...-..|+|+|.+-.+++|+.|..++.||+..- .++..+.+|.+.
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA  274 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA  274 (433)
T ss_pred             CCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccccee
Confidence            9965 577888899999999999998887665 3445678999998888899999999999999865 567888999999


Q ss_pred             EEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       581 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      |+.+.|||.|+-+++||.|.+|+||.+..+.....+. .....|.++.||.|.+++++|++|+.|++|+....+.
T Consensus       275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            9999999999999999999999999998876544442 1235799999999999999999999999999775543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=6.9e-26  Score=229.62  Aligned_cols=576  Identities=18%  Similarity=0.255  Sum_probs=339.6

Q ss_pred             CCCEEEEEeC---CeEEEEEcC-CC---ceeeeecCCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeE------
Q 002782           30 DGSFIACACG---ESINIVDLS-NA---SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKCL------   95 (882)
Q Consensus        30 dg~~la~~~~---~~I~i~d~~-~~---~~~~~l~~~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~------   95 (882)
                      .+.+||.-..   +.+-|.-+. .|   +.+..+.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-..      
T Consensus        42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape  121 (1012)
T KOG1445|consen   42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE  121 (1012)
T ss_pred             ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence            4556666543   355565553 22   24567788999999999999 4457899999999999999854321      


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~  175 (882)
                      ..+.+..-.|.++.|+|...-|...+..|.+.|||+.+++.+..+.+|...|.++.|+.||..  |++.+.|..|+|||.
T Consensus       122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~l--latscKdkqirifDP  199 (1012)
T KOG1445|consen  122 IDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKL--LATSCKDKQIRIFDP  199 (1012)
T ss_pred             eeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCce--EeeecCCcceEEeCC
Confidence            123334567889999997665555556799999999999999999999999999999998765  999999999999998


Q ss_pred             C-CCeEEEEecCcccc-eEEEEEccCCCEEEEEeCC----CeEEEEecCCce-eeeeecCcceeeEEEecCCCCCccccc
Q 002782          176 L-AKKCVATLDKHFSR-VTSMAITSDGSTLISAGRD----KVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFL  248 (882)
Q Consensus       176 ~-~~~~~~~l~~h~~~-v~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (882)
                      . .++.+++..+|.+. =..+.|..+-..|++.|.+    ..|++||.+... ...++..                    
T Consensus       200 Ra~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel--------------------  259 (1012)
T KOG1445|consen  200 RASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL--------------------  259 (1012)
T ss_pred             ccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--------------------
Confidence            7 46788888888763 3456676665677777644    579999987542 1222111                    


Q ss_pred             ccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee-eeccCCcCcce------------eEEEEc--
Q 002782          249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI-SFEMDDSKRGF------------TAATVL--  313 (882)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~--  313 (882)
                                          .++..-.+-++|.+++.++-..+..... ..+..+.....            ...++.  
T Consensus       260 --------------------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpk  319 (1012)
T KOG1445|consen  260 --------------------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPK  319 (1012)
T ss_pred             --------------------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecch
Confidence                                1111123445666665444333332222 11221111000            000000  


Q ss_pred             -----------------------------------------cCCCcEEEE--------EeCCeEEEEEecccc--c----
Q 002782          314 -----------------------------------------PSNQGLLCV--------TADQQLLLYTTVEVP--E----  338 (882)
Q Consensus       314 -----------------------------------------~~~~~l~~~--------~~~~~i~~~~~~~~~--~----  338 (882)
                                                               |+.......        ..++.+.-.++....  .    
T Consensus       320 ral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~p  399 (1012)
T KOG1445|consen  320 RALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPP  399 (1012)
T ss_pred             hhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCC
Confidence                                                     000000000        000000000000000  0    


Q ss_pred             ----c--------------------------------cceeeeeeeecccCCceEEEE----------------------
Q 002782          339 ----K--------------------------------KMELILSKRLVGYNEEILDLK----------------------  360 (882)
Q Consensus       339 ----~--------------------------------~~~~~~~~~~~~~~~~i~~~~----------------------  360 (882)
                          .                                .......... ....++..+.                      
T Consensus       400 p~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV-~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g  478 (1012)
T KOG1445|consen  400 PEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAV-PKKEEVRELDYRPYEKENGVHTPNADADSTQG  478 (1012)
T ss_pred             CCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCc-CcchhhhhhcccccccccCccCCCcccccccC
Confidence                0                                0000000000 0000000000                      


Q ss_pred             ------EeCCCCcEEE------EEEcCCcEEEEeC------------------------------CCceee---------
Q 002782          361 ------FLGEEEQYLA------VATNIEQVQVYDL------------------------------SSMSCS---------  389 (882)
Q Consensus       361 ------~~~~~~~~l~------~~~~~~~i~i~d~------------------------------~~~~~~---------  389 (882)
                            +..+....+.      ....-....+...                              ....++         
T Consensus       479 ~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH  558 (1012)
T KOG1445|consen  479 NSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRH  558 (1012)
T ss_pred             CCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheee
Confidence                  0000000000      0000000000000                              000000         


Q ss_pred             -eeeeCCCcce----EEeee-------eeecCCCEEEE--EeecCCeEEEEeCCCceEEe--eee--cccccEEEEEEcc
Q 002782          390 -YVLAGHSEIV----LCLDT-------CALSSGKILIV--TGSKDNSVRLWDSESRCCVG--VGT--GHMGAVGAVAFSK  451 (882)
Q Consensus       390 -~~~~~~~~~v----~~~~~-------~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~--~~~--~~~~~v~~v~~s~  451 (882)
                       .--.+|.+..    ..+..       -+..+... ++  ..+..|.|-||+++..-.+.  .+.  .....|+.+.|.|
T Consensus       559 ~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r-vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdP  637 (1012)
T KOG1445|consen  559 VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR-VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDP  637 (1012)
T ss_pred             ccCccccchhhhhhhhcccccCCCccCceeeccce-EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCC
Confidence             0011222211    00000       01112222 22  24557899999987532211  111  2456799999999


Q ss_pred             CCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEE
Q 002782          452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVV  530 (882)
Q Consensus       452 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~  530 (882)
                      -....|+.++.||.|++|.+.......   ....+...+..|...|+++.|+| -...|++++.|.+|++||+.+++...
T Consensus       638 FD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~  714 (1012)
T KOG1445|consen  638 FDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS  714 (1012)
T ss_pred             CChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence            877789999999999999998764322   22335566788999999999999 45789999999999999999999999


Q ss_pred             EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeEeecCc-CCEEEEEEEeCCCEEEEeecCC----eEEE
Q 002782          531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKL  604 (882)
Q Consensus       531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg----~i~i  604 (882)
                      .+.+|.+.|..++|||||+.+++.+.||+|++|+-.+++ .++.-.+.. ..--.+.|..||++++..+.|.    .|.+
T Consensus       715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~  794 (1012)
T KOG1445|consen  715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQM  794 (1012)
T ss_pred             eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhh
Confidence            999999999999999999999999999999999987764 344333322 3345688999999999888764    6888


Q ss_pred             EEcCCC--eeEEEe--ccCCCceEEEEEcCC-CCEEEEEeCCCCEEEEECCCHH
Q 002782          605 WTVRTG--ECIATY--DKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       605 wd~~~~--~~~~~~--~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      ||..+-  ..+.+.  +.-... .--.+.+| +-++++|-.|..|.+|++..+.
T Consensus       795 Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  795 YDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             hhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            887542  222222  111110 00112334 3467789999999999887643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-26  Score=216.03  Aligned_cols=246  Identities=23%  Similarity=0.369  Sum_probs=204.8

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEE
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWD  130 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~--~lasg~~dg~v~vwd  130 (882)
                      +..+..|..+|+++|.+  +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            45567899999999998  99999999999999999999999999999999999999999776  899999999999999


Q ss_pred             CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782          131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      ...-.++..+++|.+.|+.++.+|.+.  +.++.+.|+.++.||+-.|+.-..++-. ..-+.+.|+|.|.+++.+++++
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE
Confidence            999999999999999999999999765  4888899999999999998866555322 2234489999999999988776


Q ss_pred             eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782          211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  290 (882)
Q Consensus       211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~  290 (882)
                       |-+|.+++......+..+                                                             
T Consensus       191 -i~i~q~d~A~v~~~i~~~-------------------------------------------------------------  208 (362)
T KOG0294|consen  191 -IDIYQLDNASVFREIENP-------------------------------------------------------------  208 (362)
T ss_pred             -EEEEecccHhHhhhhhcc-------------------------------------------------------------
Confidence             778877654322211110                                                             


Q ss_pred             CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782          291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA  370 (882)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  370 (882)
                                                                                     ..+.++.|.  ++..++
T Consensus       209 ---------------------------------------------------------------~r~l~~~~l--~~~~L~  223 (362)
T KOG0294|consen  209 ---------------------------------------------------------------KRILCATFL--DGSELL  223 (362)
T ss_pred             ---------------------------------------------------------------ccceeeeec--CCceEE
Confidence                                                                           122333333  667899


Q ss_pred             EEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      +|..++.|.+||..+..+...+.+|...|..+.....|++.+ +++++.||.|++||+...
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~-lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY-LVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE-EEEeccCceEEEEEcccc
Confidence            999999999999999999999999999999998655666655 999999999999998865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.4e-27  Score=220.18  Aligned_cols=294  Identities=20%  Similarity=0.295  Sum_probs=244.2

Q ss_pred             eeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC------------------ceeeeeeeCCCcceEEeeeee
Q 002782          345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------------------MSCSYVLAGHSEIVLCLDTCA  406 (882)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~  406 (882)
                      ....+..|...+.+.+|++ ++.++++|+.|..|+++|++.                  ...++++..|.+.|.++.  |
T Consensus       104 Et~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--F  180 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--F  180 (430)
T ss_pred             ceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--e
Confidence            3455667888888889887 899999999999999999861                  123667889999999999  8


Q ss_pred             ecCCCEEEEEeecCCeEEEEeCCCceEEeeee--cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782          407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  484 (882)
Q Consensus       407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  484 (882)
                      .|.... |++|+.|++|++||+......+.++  ....+|.++.|+|.|. +++.|....++++||+++.+.       .
T Consensus       181 HPre~I-LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc-------f  251 (430)
T KOG0640|consen  181 HPRETI-LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC-------F  251 (430)
T ss_pred             cchhhe-EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE-------e
Confidence            888876 9999999999999998654333222  2456899999999988 899999999999999987532       1


Q ss_pred             cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-cc-CceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782          485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVEFSPVDQVVITASGDKTIKI  562 (882)
Q Consensus       485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-h~-~~v~~l~~s~~~~~l~s~~~d~~i~i  562 (882)
                      .....-..|...|+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+++++++.+.|..+++
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            12223467999999999999999999999999999999999888888764 43 46999999999999999999999999


Q ss_pred             EecCCCceeeEeecCc-----CCEEEEEEEeCCCEEEEeec-CCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEE
Q 002782          563 WSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMF  635 (882)
Q Consensus       563 wd~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l  635 (882)
                      |.+.+++++..+.|-.     .--+...|.....|++.-.. .+.+.-||.+++..+..+. +|++.+..+.-||.+..+
T Consensus       332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence            9999999999987642     22344567777778776654 4689999999998766554 799999999999999999


Q ss_pred             EEEeCCCCEEEEECC
Q 002782          636 ATGGSDALVNLWHDS  650 (882)
Q Consensus       636 ~s~~~dg~i~iw~~~  650 (882)
                      +||+.|..+++|...
T Consensus       412 mTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  412 MTCSDDFRARFWYRR  426 (430)
T ss_pred             eeecccceeeeeeec
Confidence            999999999999754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-27  Score=250.14  Aligned_cols=209  Identities=25%  Similarity=0.395  Sum_probs=175.4

Q ss_pred             eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782          387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI  466 (882)
Q Consensus       387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i  466 (882)
                      ++...+.||.+.|..+.  |+.++  +|++++.|.+||+|++....|+..+. |...|+|++|+|...+++++|+-||.|
T Consensus       360 kP~~ef~GHt~DILDlS--WSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLS--WSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             cchhhhhccchhheecc--cccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence            45667889999999997  55544  49999999999999999999999875 999999999999988999999999999


Q ss_pred             EEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--c------cCc
Q 002782          467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KRG  538 (882)
Q Consensus       467 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h------~~~  538 (882)
                      ++|++...           .......-..-|++++|+|||+..++|+.+|.+++|+....+....+.-  |      ...
T Consensus       435 RiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r  503 (712)
T KOG0283|consen  435 RLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR  503 (712)
T ss_pred             EEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence            99999754           2222233346799999999999999999999999999998877665442  1      227


Q ss_pred             eEEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeEeecCcC--CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe
Q 002782          539 IWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  611 (882)
Q Consensus       539 v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~  611 (882)
                      |+.+.|.|... .+++.+.|..|||||..+-.++..|.|+.+  .-....|+.||++|++++.|..|++|+.....
T Consensus       504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            99999998543 577778999999999998899999988653  44567999999999999999999999985443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.6e-27  Score=218.25  Aligned_cols=294  Identities=21%  Similarity=0.353  Sum_probs=245.0

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~  131 (882)
                      +++.+.||.+.|..++.......+.+++.|.+-+||.+++|.++..+.||.+.|.++.|++.+.++++++.|++..||..
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            45677899999999999888889999999999999999999999999999999999999999999999999999999962


Q ss_pred             ------CC-----C-----------------------------eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEE
Q 002782          132 ------DG-----G-----------------------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR  171 (882)
Q Consensus       132 ------~~-----~-----------------------------~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~  171 (882)
                            ..     +                             .++..+.+|.+.|.+..|...++.  +++++.|.+..
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vTaSWDRTAn  297 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVTASWDRTAN  297 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eeeeeccccce
Confidence                  11     0                             245678899999999999988777  99999999999


Q ss_pred             EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782          172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY  251 (882)
Q Consensus       172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (882)
                      +||++++..+..+.+|....+.++-+|..++++++++|.+.++||++..                               
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-------------------------------  346 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-------------------------------  346 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-------------------------------
Confidence            9999999999999999999999999999999999999999999998631                               


Q ss_pred             hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782          252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY  331 (882)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  331 (882)
                                                                                                      
T Consensus       347 --------------------------------------------------------------------------------  346 (481)
T KOG0300|consen  347 --------------------------------------------------------------------------------  346 (481)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782          332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK  411 (882)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  411 (882)
                                 +.....+.||.+.|.+..|..  +..+++|+.|..|++||+.++.....--....++..++  .+..++
T Consensus       347 -----------I~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva--vs~g~~  411 (481)
T KOG0300|consen  347 -----------IQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA--VSKGHP  411 (481)
T ss_pred             -----------cceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeE--eecCCc
Confidence                       111234567888889998874  45789999999999999988765433333445666665  444444


Q ss_pred             EEEEEeecCCeEEEEeCCCceEEe----eeecccccEEEEEEccCCC-cEEEEeeCCCeEEEEecCCC
Q 002782          412 ILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       412 ~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~v~~s~~~~-~~l~s~~~dg~i~~wd~~~~  474 (882)
                      . ++.-.++..|++||++..+..+    ...+|...|+|++|..+.. .-|++++.|..+.-|++...
T Consensus       412 i-IAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  412 I-IAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             e-EEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            4 8888889999999998765443    3458999999999975432 23889999999999998753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.6e-26  Score=237.70  Aligned_cols=282  Identities=24%  Similarity=0.398  Sum_probs=241.8

Q ss_pred             ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcE
Q 002782           51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSWKGHDGPAIG-MACHP-SGGLLATAGADRKV  126 (882)
Q Consensus        51 ~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~--~~~~~h~~~V~~-l~fs~-~~~~lasg~~dg~v  126 (882)
                      ++.+.+.||...|..+++.+.. .++++++||++++|+-...+.+  ..+.+|.+-|.. +++.+ ++.+|++|+.|+.|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            4668899999999999877655 7899999999999997655543  456778888877 88886 55569999999999


Q ss_pred             EEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEE
Q 002782          127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA  206 (882)
Q Consensus       127 ~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~  206 (882)
                      .+|...+..++..+++|.+.|.++....++.   +++||.|.++++|-  .+++...+.+|...|+++..-|++ .++||
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEec
Confidence            9999999999999999999999998766543   89999999999996  466777799999999999999988 88999


Q ss_pred             eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782          207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  286 (882)
Q Consensus       207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~  286 (882)
                      +.|++|++|.-.+                                                                   
T Consensus       158 saDKtIklWk~~~-------------------------------------------------------------------  170 (745)
T KOG0301|consen  158 SADKTIKLWKGGT-------------------------------------------------------------------  170 (745)
T ss_pred             cCcceeeeccCCc-------------------------------------------------------------------
Confidence            9999999997421                                                                   


Q ss_pred             eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782          287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  366 (882)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (882)
                                                                                ..+.+.||.+.|..+++.+  +
T Consensus       171 ----------------------------------------------------------~l~tf~gHtD~VRgL~vl~--~  190 (745)
T KOG0301|consen  171 ----------------------------------------------------------LLKTFSGHTDCVRGLAVLD--D  190 (745)
T ss_pred             ----------------------------------------------------------hhhhhccchhheeeeEEec--C
Confidence                                                                      1234557888888888884  4


Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  446 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  446 (882)
                      ..++++++||.|+.|++ ++.++..+.+|+..+++++  ..+++.. +++++.|++++||+..  .+.+.+....-.|++
T Consensus       191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~-Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWs  264 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGL-IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWS  264 (745)
T ss_pred             CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCe-EEEecCCceEEEeecC--ceEEEEecCccceEE
Confidence            58999999999999999 8889999999999999998  6677776 9999999999999977  677777777779999


Q ss_pred             EEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      +.+-++|.  +++|+.||.|++|.....
T Consensus       265 a~~L~NgD--Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  265 AKVLLNGD--IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EEEeeCCC--EEEeccCceEEEEEeccc
Confidence            99999987  899999999999987744

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=6.6e-27  Score=231.97  Aligned_cols=303  Identities=20%  Similarity=0.281  Sum_probs=231.4

Q ss_pred             EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe----EEEEe-cCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782          138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVV  212 (882)
Q Consensus       138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~----~~~~l-~~h~~~v~~l~~s~~~~~l~s~~~dg~i  212 (882)
                      ..+++|+..|+++++.|.|.+  +++|+.|..|++||+....    ..+.+ ......|.++.|++.|..+++.+.....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            457789999999999998877  9999999999999986432    22233 2334579999999999999988888888


Q ss_pred             EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782          213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  292 (882)
Q Consensus       213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~  292 (882)
                      +++|-+..+......                                                                 
T Consensus       239 kl~DRdG~~~~e~~K-----------------------------------------------------------------  253 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSK-----------------------------------------------------------------  253 (641)
T ss_pred             eEEccCCceeeeeec-----------------------------------------------------------------
Confidence            888855332211000                                                                 


Q ss_pred             ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782          293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  372 (882)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  372 (882)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (641)
T KOG0772|consen  254 --------------------------------------------------------------------------------  253 (641)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-EEeeee-----cccccEEE
Q 002782          373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT-----GHMGAVGA  446 (882)
Q Consensus       373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~  446 (882)
                         |.-+|-|+.      .-.||...++|-.  |.|..+..+++++.||++|+||+...+ .+.++.     +..-+++.
T Consensus       254 ---GDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  254 ---GDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             ---cchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence               111111111      2346777777776  778877778899999999999887543 222222     34457899


Q ss_pred             EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC--CeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~s~dg~i~iwd~~  524 (882)
                      ++|++++. .+++|+.||.|.+|+......       .....+..+|..  .|+|+.||+||++|++-+.|+++++||++
T Consensus       323 C~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-------~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  323 CAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-------RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             eecCCCcc-hhhhcccCCceeeeecCCccc-------ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            99999998 699999999999999854321       113344567777  99999999999999999999999999998


Q ss_pred             Cce-eEEEEec--ccCceEEEEEcCCCCEEEEeeC------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEE
Q 002782          525 DLV-SVVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS  595 (882)
Q Consensus       525 ~~~-~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  595 (882)
                      +.+ ++....+  ...+-+.++|||+.++|++|..      .|++.+||..+...+..+.-....|..+.|+|.=++|+.
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence            764 4444443  3345688999999999999864      578999999999999998888899999999999999999


Q ss_pred             eecCCeEEEEE
Q 002782          596 CGADGLVKLWT  606 (882)
Q Consensus       596 ~~~dg~i~iwd  606 (882)
                      |+.||.+++|=
T Consensus       475 gsgdG~~~vyY  485 (641)
T KOG0772|consen  475 GSGDGTAHVYY  485 (641)
T ss_pred             ecCCCceEEEE
Confidence            99999999873

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9e-27  Score=216.88  Aligned_cols=332  Identities=24%  Similarity=0.422  Sum_probs=252.5

Q ss_pred             EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782          136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  215 (882)
Q Consensus       136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw  215 (882)
                      .+..+.||...|+.++...  ...++.+++.|.+.++|.++++.|+.++.+|.+.|.++.|++.+.++++++.|++-.||
T Consensus       140 lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             ehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            3556789999999998755  34579999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782          216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  295 (882)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~  295 (882)
                      ...-.-.+   |....       |.+..                           ++                       
T Consensus       218 ~~av~~~v---P~~~a-------~~~hS---------------------------sE-----------------------  237 (481)
T KOG0300|consen  218 KAAVNWEV---PSNNA-------PSDHS---------------------------SE-----------------------  237 (481)
T ss_pred             HHhhcCcC---CCCCC-------CCCCC---------------------------ch-----------------------
Confidence            74321100   00000       00000                           00                       


Q ss_pred             eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782          296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  375 (882)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  375 (882)
                        .+.+.+                     |                         .++. -.+-... .++         
T Consensus       238 --eE~e~s---------------------D-------------------------e~~~-d~d~~~~-sD~---------  258 (481)
T KOG0300|consen  238 --EEEEHS---------------------D-------------------------EHNR-DTDSSEK-SDG---------  258 (481)
T ss_pred             --hhhhcc---------------------c-------------------------cccc-ccccccc-cCC---------
Confidence              000000                     0                         0000 0000000 000         


Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  455 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~  455 (882)
                      ..|+       .++..+.+|...|.+.+  |...|+. +++++.|.+..+||++++.++..+.+|....+.++-+|..+ 
T Consensus       259 ~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-  327 (481)
T KOG0300|consen  259 HTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-  327 (481)
T ss_pred             ceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcce-
Confidence            1111       12336778999999998  7788887 99999999999999999999999999999999999999854 


Q ss_pred             EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEec
Q 002782          456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRG  534 (882)
Q Consensus       456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~  534 (882)
                      ++++.+.|.+.++||+..         .+.....+++|...|+++.|..+. .+++|+.|.+|++||+++. .++.++. 
T Consensus       328 LVvTsSrDtTFRLWDFRe---------aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-  396 (481)
T KOG0300|consen  328 LVVTSSRDTTFRLWDFRE---------AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-  396 (481)
T ss_pred             EEEEeccCceeEeccchh---------hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-
Confidence            899999999999999983         344677889999999999998765 6789999999999999886 4555665 


Q ss_pred             ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee----EeecCcCCEEEEEEEeCC--CEEEEeecCCeEEEEEcC
Q 002782          535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK----TFEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~  608 (882)
                      -.+++..++.+..+.+++.-..+..|++||+......+    .-.+|..-|.+++|..+.  .-|+++|.|..+.-|++.
T Consensus       397 tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  397 TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            56789999999988899999999999999996554322    345899999999998653  358999999999999986


Q ss_pred             CC
Q 002782          609 TG  610 (882)
Q Consensus       609 ~~  610 (882)
                      ..
T Consensus       477 ~p  478 (481)
T KOG0300|consen  477 TP  478 (481)
T ss_pred             cc
Confidence            53

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.7e-25  Score=232.73  Aligned_cols=465  Identities=20%  Similarity=0.274  Sum_probs=307.7

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTLKCLRSWKG  100 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~---~las~~~dg~i~iwd~~~~~~~~~~~~  100 (882)
                      +-+||+|++++++.+++.|.||...||.++..+.+|..+++.+.+.|...   ++.+++.+|.|++||+..+.+++++..
T Consensus        21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            67799999999999999999999999999999999999999999988654   677999999999999999888877653


Q ss_pred             CCCCEEEE-----------------------------------------------------------EEcCCCCEEEEEe
Q 002782          101 HDGPAIGM-----------------------------------------------------------ACHPSGGLLATAG  121 (882)
Q Consensus       101 h~~~V~~l-----------------------------------------------------------~fs~~~~~lasg~  121 (882)
                      + .++.++                                                           .+++.|.+.+.. 
T Consensus       101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-  178 (792)
T KOG1963|consen  101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-  178 (792)
T ss_pred             C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-
Confidence            2 222222                                                           222222221111 


Q ss_pred             CCCcEEEEECCCCeEEEE----eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC----CeEEEEecCcccceEE
Q 002782          122 ADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTS  193 (882)
Q Consensus       122 ~dg~v~vwd~~~~~~~~~----~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~----~~~~~~l~~h~~~v~~  193 (882)
                      .+..+.+|++..+.....    -..|.-.+++.++||.++.  +++|..||.|.+|.--.    ......+.-|...|.+
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence            133456666655441111    1247777999999998765  99999999999996433    2234567889999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCC
Q 002782          194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  273 (882)
Q Consensus       194 l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (882)
                      ++|+++|.+|++||..|.+.+|.+.+++...-....                                            
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg--------------------------------------------  292 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG--------------------------------------------  292 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCcccccccC--------------------------------------------
Confidence            999999999999999999999999987732211122                                            


Q ss_pred             CeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc----ceeeeeeee
Q 002782          274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK----MELILSKRL  349 (882)
Q Consensus       274 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~  349 (882)
                                                     ..+..+.++|++....++..|+.|.+..........    .........
T Consensus       293 -------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  293 -------------------------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             -------------------------------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence                                           334555666666667777777777777664322100    000000001


Q ss_pred             cccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC-----CC------cceEEeeeeeecCCCEEEEEee
Q 002782          350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HS------EIVLCLDTCALSSGKILIVTGS  418 (882)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~------~~v~~~~~~~~~~~~~~l~~~~  418 (882)
                      .+..+-...+++.| ..+.++..+..|.|.+||+.+...++.+..     +.      ..++.+.  .+..|.+ ++++-
T Consensus       342 ~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~--~~~~gs~-maT~E  417 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA--RSRFGSW-MATLE  417 (792)
T ss_pred             ccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh--hhccceE-EEEee
Confidence            11223334455555 566777788889999999988776655431     11      2233443  4455665 66653


Q ss_pred             --------cC--CeEEEEeCCCceEE-----eeeecccccEEEEEEccCCCc-EEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782          419 --------KD--NSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPM  482 (882)
Q Consensus       419 --------~d--g~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~s~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~  482 (882)
                              .|  -.+++|-......-     .....|...+.+.++.+..+. .+++++.||.+++|-+...........
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s  497 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS  497 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence                    22  35778866543321     223468877777777654444 799999999999999976544333333


Q ss_pred             cccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC--CEEEEeeCCCc
Q 002782          483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKT  559 (882)
Q Consensus       483 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~d~~  559 (882)
                      ...+...-.-|..++++++|+.||.+|+++ .|++|.+||..+. +..........++..++|....  ...+.....+.
T Consensus       498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (792)
T KOG1963|consen  498 NWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQR  576 (792)
T ss_pred             ceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCce
Confidence            444444444588999999999999777765 5789999999884 3333332233344444443211  12223334578


Q ss_pred             EEEEecCCCceee
Q 002782          560 IKIWSISDGSCLK  572 (882)
Q Consensus       560 i~iwd~~~~~~~~  572 (882)
                      +.+|++-+.....
T Consensus       577 l~~WNll~~~l~w  589 (792)
T KOG1963|consen  577 LSVWNLLSMSLIW  589 (792)
T ss_pred             EehHhhhhhheec
Confidence            9999998776665

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.7e-25  Score=194.32  Aligned_cols=296  Identities=25%  Similarity=0.360  Sum_probs=232.1

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------eeEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---------------KCLRSWKGHDGPAIGMACHPSGGLLATAGAD  123 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---------------~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d  123 (882)
                      ++..|.+++|+|.|.+.|+|+.+.+++|--...-               .....-+.|.+.|.|.+|||+|.++|+|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            5778999999999999999999999998755321               1112335689999999999999999999999


Q ss_pred             CcEEEEECCCCeEE-----EEeecCCCcEEEEEEecC--CCccEEEEEe-CCCcEEEEECCCCeEEEEecCcccceEEEE
Q 002782          124 RKVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPD--TDKSLLFSGS-DDATVRVWDLLAKKCVATLDKHFSRVTSMA  195 (882)
Q Consensus       124 g~v~vwd~~~~~~~-----~~~~~h~~~V~~l~f~~~--~~~~~l~sgs-~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~  195 (882)
                      .+|++.......+.     ..|.-|.+.|..++|..+  ....+|++++ .|..|.+=|...|+..+.+.+|.+.|.++ 
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence            99999877554332     346679999999999644  3445666654 57788888999999999999999999887 


Q ss_pred             EccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCe
Q 002782          196 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  275 (882)
Q Consensus       196 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  275 (882)
                      ++=+|-.+++|+.|.+|++||++-..++.++....                                             
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~---------------------------------------------  224 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF---------------------------------------------  224 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------------------
Confidence            44467899999999999999987544332221100                                             


Q ss_pred             EEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCc
Q 002782          276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  355 (882)
Q Consensus       276 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (882)
                                                                                                  |   
T Consensus       225 ----------------------------------------------------------------------------~---  225 (350)
T KOG0641|consen  225 ----------------------------------------------------------------------------H---  225 (350)
T ss_pred             ----------------------------------------------------------------------------c---
Confidence                                                                                        0   


Q ss_pred             eEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe
Q 002782          356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  435 (882)
Q Consensus       356 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  435 (882)
                               +          +                -.....|.+++  ..|.|+. +++|..|....+||+..++.++
T Consensus       226 ---------~----------~----------------glessavaav~--vdpsgrl-l~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  226 ---------D----------G----------------GLESSAVAAVA--VDPSGRL-LASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             ---------C----------C----------------CcccceeEEEE--ECCCcce-eeeccCCCceEEEEeeCCceee
Confidence                     0          0                00122344444  6688886 9999999999999999999999


Q ss_pred             eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782          436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  515 (882)
Q Consensus       436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d  515 (882)
                      .+..|...|.++.|+|... ++++++.|..|++-|+...-.      ...+..+...|...+..+.|+|..--+++.+.|
T Consensus       268 ~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             eeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchh------hcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence            9999999999999999855 899999999999999875411      111344556788888999999999999999999


Q ss_pred             CcEEEEeCC
Q 002782          516 RTACVWRLP  524 (882)
Q Consensus       516 g~i~iwd~~  524 (882)
                      +++.+|-++
T Consensus       341 kt~tlwa~~  349 (350)
T KOG0641|consen  341 KTATLWALN  349 (350)
T ss_pred             ceEEEeccC
Confidence            999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-25  Score=210.49  Aligned_cols=289  Identities=15%  Similarity=0.228  Sum_probs=233.7

Q ss_pred             cEEEEEeCCeEEEEEecccc-----cccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee
Q 002782          318 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL  392 (882)
Q Consensus       318 ~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  392 (882)
                      .+++++....|.-+.+...+     ...+.+...-....|.+.+.+++.   ++.++++|++|..|+|||+........+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence            36778888888888877665     223344455566788899999988   6679999999999999999999999999


Q ss_pred             eCCCcceEEeeeeeecCCC--EEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          393 AGHSEIVLCLDTCALSSGK--ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                      -.|.+.|+++.  |.++-.  . |++|+.||.|.+|+.....++..+.+|.+.|+.++++|.++ +.++.+.|+.++.||
T Consensus        80 l~HagsitaL~--F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   80 LSHAGSITALK--FYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWN  155 (362)
T ss_pred             eccccceEEEE--ecCCcchhh-eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeeh
Confidence            99999999998  666543  5 99999999999999999999999999999999999999988 788999999999999


Q ss_pred             cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782          471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                      +-.+.....           ..-....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|- ++..
T Consensus       156 LV~Gr~a~v-----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~  221 (362)
T KOG0294|consen  156 LVRGRVAFV-----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE  221 (362)
T ss_pred             hhcCcccee-----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence            976632111           1112233459999999999988765 4899999887666655532 456677775 4778


Q ss_pred             EEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEE--EeCCCEEEEeecCCeEEEEEcCCC-----eeEEEeccCCCce
Q 002782          551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKI  623 (882)
Q Consensus       551 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v  623 (882)
                      |++|+.|+.|++||.++..+...+.+|.+.|-.+.+  .|++.+|+|++.||.|++||++..     +.+..++. ..++
T Consensus       222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~Rl  300 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRL  300 (362)
T ss_pred             EEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcc
Confidence            999999999999999999999999999999999985  367889999999999999999866     44555543 4555


Q ss_pred             EEEEE
Q 002782          624 WALAV  628 (882)
Q Consensus       624 ~~l~~  628 (882)
                      +|+..
T Consensus       301 tCl~~  305 (362)
T KOG0294|consen  301 TCLRV  305 (362)
T ss_pred             ceeee
Confidence            55544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-27  Score=239.97  Aligned_cols=362  Identities=19%  Similarity=0.325  Sum_probs=273.2

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC-
Q 002782          107 GMACHP-SGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-  178 (882)
Q Consensus       107 ~l~fs~-~~~~lasg~~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~-  178 (882)
                      ++..+. .++||.+||.||.|++|++....      .+..+..|...|..++...+++.  |+++|.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCc
Confidence            344444 56689999999999999985422      46678889999999999888776  999999999999999887 


Q ss_pred             -eEEEEecCcccceEEEEE-ccCCCEEEEEeCCCeEEEEecCCcee--eeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782          179 -KCVATLDKHFSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ  254 (882)
Q Consensus       179 -~~~~~l~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (882)
                       -|..++..|...|.++++ .++...+++||-|+.|.+||+.++..  +....                           
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---------------------------  159 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN---------------------------  159 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc---------------------------
Confidence             688999999999999999 78888999999999999999986532  10000                           


Q ss_pred             hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782          255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  334 (882)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  334 (882)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (735)
T KOG0308|consen  160 --------------------------------------------------------------------------------  159 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEE
Q 002782          335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI  414 (882)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  414 (882)
                             .........|+...|.+++..+ .+..++.|+..+.+++||..+.+.+..+.||++.|.++.  .+++|.. +
T Consensus       160 -------~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--~~dDGt~-~  228 (735)
T KOG0308|consen  160 -------NVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--VNDDGTR-L  228 (735)
T ss_pred             -------ccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE--EcCCCCe-E
Confidence                   0000011115566777777665 557888888999999999999999999999999999998  8899988 9


Q ss_pred             EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC
Q 002782          415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  494 (882)
Q Consensus       415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  494 (882)
                      ++++.||+|++||+...+++.++..|...|+++..+|+-. .+.+|+.||.|..=|+....          ....+....
T Consensus       229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~----------~~tlick~d  297 (735)
T KOG0308|consen  229 LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPA----------KSTLICKED  297 (735)
T ss_pred             eecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCch----------hheEeecCC
Confidence            9999999999999999999999999999999999998876 79999999999999887641          111122233


Q ss_pred             CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782          495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  574 (882)
Q Consensus       495 ~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  574 (882)
                      .+|..+..+...+-+-+++.|+.|+-|...-..               .+++.+.+.. -+.|....+.+... .+-..+
T Consensus       298 aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~---------------~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi  360 (735)
T KOG0308|consen  298 APVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI---------------ALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVI  360 (735)
T ss_pred             CchhhhhhccccCCceeeeccccceecCCcccc---------------ccccCCCCCc-ccccCCCccccccC-CCceec
Confidence            456666666555555778889999999754321               3344444444 23334444444311 222223


Q ss_pred             ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782          575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  617 (882)
Q Consensus       575 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  617 (882)
                      +| ..++...++..|-+++++-...|.+.+||+-....+..+.
T Consensus       361 ~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  361 PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            22 2345556777889999999999999999998777666554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=6.1e-26  Score=220.67  Aligned_cols=205  Identities=26%  Similarity=0.403  Sum_probs=186.4

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      ++...|....+++|+.+ .+.++|..+++.+.+++||...|+.+.++|+...+++++.|-.|+||.............|.
T Consensus       224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~  303 (506)
T KOG0289|consen  224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE  303 (506)
T ss_pred             EEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc
Confidence            34455555788898888 89999999999999999999999999999999999999999999999999988888899999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC  180 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~  180 (882)
                      .+|+.+..+|+|.||++++.|++..+.|+.+|.++.....  ..-.+++.+|+|||  .++.+|+.||.|++||+.++..
T Consensus       304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCccc
Confidence            9999999999999999999999999999999998876653  23458999999986  4599999999999999999999


Q ss_pred             EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782          181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       181 ~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      +..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+..++++..+
T Consensus       382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence            99999999999999999999999999999999999999887776666544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.2e-26  Score=223.93  Aligned_cols=286  Identities=26%  Similarity=0.369  Sum_probs=227.1

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----E-------------e-ecCCCcEEEEEEecCC
Q 002782           95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----Y-------------F-KGHKGVVSSILFHPDT  156 (882)
Q Consensus        95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~----~-------------~-~~h~~~V~~l~f~~~~  156 (882)
                      ......|.-+|.+++++|++++.++++.+++|.=|++.+|+...    +             - ++|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56677899999999999999999999999999999998876331    1             0 2688899999999988


Q ss_pred             CccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782          157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC  236 (882)
Q Consensus       157 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  236 (882)
                      .+  |++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...               
T Consensus       215 ky--latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---------------  277 (479)
T KOG0299|consen  215 KY--LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---------------  277 (479)
T ss_pred             cE--EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---------------
Confidence            76  9999999999999999999999999999999999999888889999999999999875322               


Q ss_pred             ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782          237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN  316 (882)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (882)
                                                                                                      
T Consensus       278 --------------------------------------------------------------------------------  277 (479)
T KOG0299|consen  278 --------------------------------------------------------------------------------  277 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC
Q 002782          317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS  396 (882)
Q Consensus       317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  396 (882)
                                                                                             .+.++.+|.
T Consensus       278 -----------------------------------------------------------------------~vetlyGHq  286 (479)
T KOG0299|consen  278 -----------------------------------------------------------------------YVETLYGHQ  286 (479)
T ss_pred             -----------------------------------------------------------------------HHHHHhCCc
Confidence                                                                                   112556777


Q ss_pred             cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782          397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  476 (882)
Q Consensus       397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~  476 (882)
                      +.|..++  ...-++. +.+|+.|+++++|++... ....+.+|.+.+.|++|-.+.  .+++|+.+|.|.+|++.....
T Consensus       287 d~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  287 DGVLGID--ALSRERC-VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             cceeeec--hhcccce-EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence            7777777  6666665 777889999999999543 344577889999999998875  489999999999999876542


Q ss_pred             CCCCcccccchh--hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc----eeEEEEecccCceEEEEEcCCCCE
Q 002782          477 DAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       477 ~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                      ............  ....+...|++++..|...++|+|+.+|.|++|-+.++    .++..+. -.+-|++++|+++|+.
T Consensus       361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR  439 (479)
T ss_pred             eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence            211110000000  01122358999999999999999999999999999877    3444444 5677999999999997


Q ss_pred             EEEee
Q 002782          551 VITAS  555 (882)
Q Consensus       551 l~s~~  555 (882)
                      |++|.
T Consensus       440 ivagi  444 (479)
T KOG0299|consen  440 IVAGI  444 (479)
T ss_pred             EEEec
Confidence            77663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.2e-26  Score=209.58  Aligned_cols=276  Identities=20%  Similarity=0.342  Sum_probs=210.3

Q ss_pred             CCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeE-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782           59 GSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF  135 (882)
Q Consensus        59 ~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~-~~~~-~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~  135 (882)
                      .++.|.+++||| ...++++++-||+||+|+++. |..+ +....|.+||.+++|+.||..+++|+.|+.+++||+.++.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            567899999999 455666888899999999987 3433 3345589999999999999999999999999999999994


Q ss_pred             EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782          136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  215 (882)
Q Consensus       136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw  215 (882)
                       +..+..|.++|.++.|.+...+..|+|||.|.+|+.||.++..++.++.-. ..+.++..  -...++.+..++.|.+|
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEE
Confidence             667778999999999998877778999999999999999999988887543 44555544  34478888888999999


Q ss_pred             ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782          216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  295 (882)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~  295 (882)
                      +++.........                                                                    
T Consensus       182 nL~n~~te~k~~--------------------------------------------------------------------  193 (347)
T KOG0647|consen  182 NLENPPTEFKRI--------------------------------------------------------------------  193 (347)
T ss_pred             EcCCCcchhhhh--------------------------------------------------------------------
Confidence            886532111000                                                                    


Q ss_pred             eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782          296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  375 (882)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  375 (882)
                                                                           .....-.+.+++...+. ...+.|+-.
T Consensus       194 -----------------------------------------------------~SpLk~Q~R~va~f~d~-~~~alGsiE  219 (347)
T KOG0647|consen  194 -----------------------------------------------------ESPLKWQTRCVACFQDK-DGFALGSIE  219 (347)
T ss_pred             -----------------------------------------------------cCcccceeeEEEEEecC-CceEeeeec
Confidence                                                                 00011233455554433 334778888


Q ss_pred             CcEEEEeCCCc--eeeeeeeCCCc---------ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccE
Q 002782          376 EQVQVYDLSSM--SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV  444 (882)
Q Consensus       376 ~~i~i~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  444 (882)
                      |.+.+..+..+  .....+++|..         .|.+++  |.|.... |++++.||++.+||-.....+.....|..+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~--FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA--FHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE--eecccce-EEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence            88888887765  44445666652         345565  7887776 9999999999999999888888888999999


Q ss_pred             EEEEEccCCCcEEEEeeCC
Q 002782          445 GAVAFSKKLQNFLVSGSSD  463 (882)
Q Consensus       445 ~~v~~s~~~~~~l~s~~~d  463 (882)
                      ++.+|+.+|.-+..+.+.|
T Consensus       297 tcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ceeEecCCCCEEEEEeecc
Confidence            9999999998554444543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.2e-27  Score=239.38  Aligned_cols=287  Identities=18%  Similarity=0.325  Sum_probs=235.7

Q ss_pred             EeCCCCcEEEEEEcCCcEEEEeCCCce------eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc--e
Q 002782          361 FLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--C  432 (882)
Q Consensus       361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~  432 (882)
                      ...+++++|.+|+.||.|++|+.....      ....++.|.+.|..+.  ...+++. +++++.|-+|.+|+...+  -
T Consensus        32 ~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   32 LDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             ccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCcch
Confidence            345678899999999999999986432      3567888999999887  4466666 999999999999999877  6


Q ss_pred             EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc-cccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782          433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM-NLKAKAVVAAHGKDINSLAVAPNDSLVCT  511 (882)
Q Consensus       433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~la~  511 (882)
                      ++.++..|...|.|+++-.....++++||-|+.|.+||++.+........ .........++...|.+++..+.|..+++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            77888999999999999444455899999999999999997632111001 11112222378889999999999999999


Q ss_pred             EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCC
Q 002782          512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  591 (882)
Q Consensus       512 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~  591 (882)
                      |+..+.+++||.++++.+..++||...|.++..++||..++++|.||+|++||+...+|+.++..|...|+++..+|+-.
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~  268 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT  268 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       592 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      .+.+|+.||.|..=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|...
T Consensus       269 ~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  269 HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            99999999999999999854333333345566666666555545666777778777654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=6.4e-26  Score=246.46  Aligned_cols=311  Identities=22%  Similarity=0.343  Sum_probs=243.7

Q ss_pred             CCCcEEEEEEecCCCccEEEEEe--CCCcEEEEECCC------------CeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782          143 HKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLA------------KKCVATLDKHFSRVTSMAITSDGSTLISAGR  208 (882)
Q Consensus       143 h~~~V~~l~f~~~~~~~~l~sgs--~dg~I~vwd~~~------------~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~  208 (882)
                      +...|.++..+||+..  ++||+  .||.+++|+...            .+.+.++..|.+.|.|+.|+|||++|++|+.
T Consensus        12 ~~~~IfSIdv~pdg~~--~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK--FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCcee--EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            3456899999999877  99999  899999998642            3456677889999999999999999999999


Q ss_pred             CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782          209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  288 (882)
Q Consensus       209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~  288 (882)
                      |+.|.+|..... ..                 +.                         +.++..               
T Consensus        90 D~~v~iW~~~~~-~~-----------------~~-------------------------~fgs~g---------------  111 (942)
T KOG0973|consen   90 DRLVMIWERAEI-GS-----------------GT-------------------------VFGSTG---------------  111 (942)
T ss_pred             cceEEEeeeccc-CC-----------------cc-------------------------cccccc---------------
Confidence            999999986520 00                 00                         000000               


Q ss_pred             ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782          289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  368 (882)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  368 (882)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (942)
T KOG0973|consen  112 --------------------------------------------------------------------------------  111 (942)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782          369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  448 (882)
Q Consensus       369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  448 (882)
                             |   .-+.+..++...+.+|...|..+.  ++|++.. +++++.|++|.+||..+...+..+.+|.+.|..+.
T Consensus       112 -------~---~~~vE~wk~~~~l~~H~~DV~Dv~--Wsp~~~~-lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs  178 (942)
T KOG0973|consen  112 -------G---AKNVESWKVVSILRGHDSDVLDVN--WSPDDSL-LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS  178 (942)
T ss_pred             -------c---ccccceeeEEEEEecCCCccceec--cCCCccE-EEEecccceEEEEccccceeeeeeecccccccceE
Confidence                   0   012344556668888999998888  8898887 99999999999999999999999999999999999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc----CCCcEEEEeCC
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS----QDRTACVWRLP  524 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s----~dg~i~iwd~~  524 (882)
                      |.|-|+ ++++-+.|++|++|++....-...    .............+..+.|||||.+|++.-    .-.++.|.+-.
T Consensus       179 ~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~----It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~  253 (942)
T KOG0973|consen  179 WDPIGK-YFASQSDDRTLKVWRTSDWGIEKS----ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG  253 (942)
T ss_pred             ECCccC-eeeeecCCceEEEEEcccceeeEe----eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence            999998 899999999999999665311000    000000111234567899999999999853    23468899988


Q ss_pred             CceeEEEEecccCceEEEEEcCC-----CC------------EEEEeeCCCcEEEEecCCCceeeEee-cCcCCEEEEEE
Q 002782          525 DLVSVVTFRGHKRGIWSVEFSPV-----DQ------------VVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASF  586 (882)
Q Consensus       525 ~~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~  586 (882)
                      +.+.-..|-||..++.++.|+|.     .+            .+|+|+.|++|-||.....+++.... -...+|..++|
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW  333 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW  333 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence            88888999999999999999981     11            78899999999999987766654432 24578999999


Q ss_pred             EeCCCEEEEeecCCeEEEEEcCCCe
Q 002782          587 LTRGAQIVSCGADGLVKLWTVRTGE  611 (882)
Q Consensus       587 s~~g~~l~s~~~dg~i~iwd~~~~~  611 (882)
                      +|||..|+.++.||+|.+......+
T Consensus       334 spdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  334 SPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             cCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999999999999999999987644

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.9e-25  Score=241.59  Aligned_cols=215  Identities=20%  Similarity=0.290  Sum_probs=178.3

Q ss_pred             eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcC
Q 002782          436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQ  514 (882)
Q Consensus       436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~  514 (882)
                      .+.+|.+.|.+++|+|....+|++++.|++|++||+.......   ........+.+|...|.+++|+|++ .+|++++.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            4678999999999999434489999999999999997542110   0112344567899999999999985 79999999


Q ss_pred             CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEE
Q 002782          515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI  593 (882)
Q Consensus       515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l  593 (882)
                      |++|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||+++++.+.++.+|.+. +..+.|.+++..+
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            999999999999999999999999999999999999999999999999999999999999999865 4567889988888


Q ss_pred             EEee----cCCeEEEEEcCCCe-eEEEeccC-CCceEEEEEcCCCCEEEEEe-CCCCEEEEECCCHH
Q 002782          594 VSCG----ADGLVKLWTVRTGE-CIATYDKH-EDKIWALAVGKKTEMFATGG-SDALVNLWHDSTAA  653 (882)
Q Consensus       594 ~s~~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~s~~~~~l~s~~-~dg~i~iw~~~~~~  653 (882)
                      ++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++|++.++.
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            8765    47899999998754 44444333 34566678999999999888 59999999998754

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.9e-25  Score=240.54  Aligned_cols=234  Identities=16%  Similarity=0.258  Sum_probs=189.6

Q ss_pred             EeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782          416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  495 (882)
Q Consensus       416 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  495 (882)
                      .|+.++.+++|+......+..+.+|.+.|.+++|+|+...+|++|+.|++|++||+.........  .......+.+|..
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~  126 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK  126 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence            35567889999988888888899999999999999985568999999999999999754211000  0012334567999


Q ss_pred             CeeEEEEcCCCcE-EEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782          496 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  574 (882)
Q Consensus       496 ~i~~~~~s~~~~~-la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  574 (882)
                      .|.+++|+|++.. +++++.|++|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++++.++
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            9999999999875 5789999999999999998877776 6678999999999999999999999999999999999999


Q ss_pred             ecCcCCEEEE-----EEEeCCCEEEEeecCC----eEEEEEcCC-CeeEEEec--cCCCceEEEEEcCCCCEEEEEeCCC
Q 002782          575 EGHTSSVLRA-----SFLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA  642 (882)
Q Consensus       575 ~~h~~~v~~~-----~~s~~g~~l~s~~~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg  642 (882)
                      .+|.+.+...     .|++++.+|++++.|+    .|+|||+++ ++++..+.  .+.+.+......++|.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            9998875443     3457889999988775    799999995 56665543  3334444444566788999999999


Q ss_pred             CEEEEECCCH
Q 002782          643 LVNLWHDSTA  652 (882)
Q Consensus       643 ~i~iw~~~~~  652 (882)
                      .|++|++..+
T Consensus       286 tIr~~e~~~~  295 (568)
T PTZ00420        286 NCRYYQHSLG  295 (568)
T ss_pred             eEEEEEccCC
Confidence            9999999765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=4.1e-26  Score=224.41  Aligned_cols=254  Identities=20%  Similarity=0.366  Sum_probs=215.1

Q ss_pred             eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE----------EeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782          393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSS  462 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~v~~s~~~~~~l~s~~~  462 (882)
                      -.|.+.|..+.  ..|....++++++..+.+.|||..+-.-          -..+.+|...-.+++|++.....+++++.
T Consensus       121 i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  121 INHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             ccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            35778888777  7788888899999999999999764221          12577898878889999988889999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCC--CceeEEEEecccCce
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGI  539 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~--~~~~~~~~~~h~~~v  539 (882)
                      |++|.+||+......   .....+...+.+|...|..++|+| +..++++++.|+.+.|||++  +.++.....+|..+|
T Consensus       199 d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  199 DHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             CCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999876432   223446677889999999999999 56789999999999999999  567777888999999


Q ss_pred             EEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC-CEEEEeecCCeEEEEEcCC-------
Q 002782          540 WSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT-------  609 (882)
Q Consensus       540 ~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~-------  609 (882)
                      +|++|+| ++.+|||||.|++|++||+++- .++.++++|...|.++.|+|+. ..|+|++.|+.+.|||+..       
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            9999999 5568899999999999999875 5789999999999999999964 5789999999999999863       


Q ss_pred             -------CeeEEEeccCCCceEEEEEcCCCCE-EEEEeCCCCEEEEECCC
Q 002782          610 -------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDST  651 (882)
Q Consensus       610 -------~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iw~~~~  651 (882)
                             .+++...-||...|..+.|.|+..+ |+|.+.|+.+.||+...
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                   1345677799999999999999885 66889999999999873

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=9.9e-25  Score=236.46  Aligned_cols=248  Identities=15%  Similarity=0.194  Sum_probs=196.2

Q ss_pred             EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce--------EEeeeeccccc
Q 002782          372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA  443 (882)
Q Consensus       372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~  443 (882)
                      |+..+.+++|+.........+.+|.+.|.+++  ++|....++++|+.||+|++||+.++.        .+..+.+|...
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            44567899999888888888999999999999  888744449999999999999997642        33467889999


Q ss_pred             EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      |.+++|+|++..++++++.|++|++||+....          ..... .|...|.+++|+|+|.+|++++.|+.|+|||+
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence            99999999988778899999999999998652          11111 25568999999999999999999999999999


Q ss_pred             CCceeEEEEecccCceE-----EEEEcCCCCEEEEeeCCC----cEEEEecCC-CceeeEeec--CcCCEEEEEEEeCCC
Q 002782          524 PDLVSVVTFRGHKRGIW-----SVEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA  591 (882)
Q Consensus       524 ~~~~~~~~~~~h~~~v~-----~l~~s~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~--h~~~v~~~~~s~~g~  591 (882)
                      ++++.+..+.+|.+.+.     ...|++++.+|++++.|+    +|+|||+++ +.++..+..  +.+.+...-..++|.
T Consensus       197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence            99999999999987643     334568999999988774    799999985 566665543  333343333455688


Q ss_pred             EEEEeecCCeEEEEEcCCCeeE--EEeccCCCceEEEEEcCCCC
Q 002782          592 QIVSCGADGLVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTE  633 (882)
Q Consensus       592 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~  633 (882)
                      ++++|+.|+.|++|++..+...  ..+. +..++.+++|.|...
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence            9999999999999999877532  2222 567788999999653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.9e-25  Score=204.81  Aligned_cols=270  Identities=23%  Similarity=0.291  Sum_probs=203.8

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782          100 GHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDG-GFCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL  176 (882)
Q Consensus       100 ~h~~~V~~l~fs~-~~~~lasg~~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~  176 (882)
                      .....|.+++||| ...+++.||.|++|++|+++. |... .....|.++|.+++|+.|+..  +++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgsk--Vf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSK--VFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCce--EEeeccCCceEEEEcc
Confidence            3568899999999 556677899999999999976 3332 344569999999999999866  9999999999999999


Q ss_pred             CCeEEEEecCcccceEEEEEccCCC--EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782          177 AKKCVATLDKHFSRVTSMAITSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ  254 (882)
Q Consensus       177 ~~~~~~~l~~h~~~v~~l~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (882)
                      ++ .+..+..|.++|..+.|-+...  .|++|+-|++|+.||.+....+.++..++.+.++..                 
T Consensus       103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv-----------------  164 (347)
T KOG0647|consen  103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV-----------------  164 (347)
T ss_pred             CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc-----------------
Confidence            99 5667788999999999987665  899999999999999998777666655443322111                 


Q ss_pred             hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782          255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  334 (882)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  334 (882)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (347)
T KOG0647|consen  165 --------------------------------------------------------------------------------  164 (347)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee-ee-CCCcceEEeeeeeecCCCE
Q 002782          335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LA-GHSEIVLCLDTCALSSGKI  412 (882)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~  412 (882)
                                                    ...++++++.+..|.+|+++.+..... .. .-.-.+.|++  ...+...
T Consensus       165 ------------------------------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va--~f~d~~~  212 (347)
T KOG0647|consen  165 ------------------------------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA--CFQDKDG  212 (347)
T ss_pred             ------------------------------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE--EEecCCc
Confidence                                          122556666666777777754432211 11 1223467777  6667666


Q ss_pred             EEEEeecCCeEEEEeCCCc--eEEeeeeccc---------ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782          413 LIVTGSKDNSVRLWDSESR--CCVGVGTGHM---------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  481 (882)
Q Consensus       413 ~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  481 (882)
                       .+.|+-+|.+-+..+..+  +.-..++.|.         ..|.+++|+|... .|++++.||+..+||-+...      
T Consensus       213 -~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~------  284 (347)
T KOG0647|consen  213 -FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART------  284 (347)
T ss_pred             -eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhh------
Confidence             699999999999988775  3333455554         3688899999866 79999999999999976432      


Q ss_pred             ccccchhhhhhcCCCeeEEEEcCCCcEEEEEc
Q 002782          482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  513 (882)
Q Consensus       482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s  513 (882)
                          .......|..+|+|.+|+.+|.++|.+.
T Consensus       285 ----kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  285 ----KLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ----hhhccCcCCCccceeEecCCCCEEEEEe
Confidence                3444567899999999999999998764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=3.6e-24  Score=217.23  Aligned_cols=149  Identities=21%  Similarity=0.341  Sum_probs=125.2

Q ss_pred             CCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-------eeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEe
Q 002782          494 GKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWS  564 (882)
Q Consensus       494 ~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd  564 (882)
                      +..|+.+.|.| |...||+++.||.|++|.+..+       .+...+.+|...|+++.|+| ....|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45678889998 7789999999999999998653       55677889999999999999 456899999999999999


Q ss_pred             cCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCC-CceEEEEEcCCCCEEEEEeCCC
Q 002782          565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHE-DKIWALAVGKKTEMFATGGSDA  642 (882)
Q Consensus       565 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg  642 (882)
                      +.+++....+.+|++.|..++|||+|+.+++.+.||.|++|+.++++ .+..-.+.- .+-..+.|.-||++++..|-|.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            99999999999999999999999999999999999999999998775 444433322 2223456777999988887664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.9e-25  Score=217.03  Aligned_cols=310  Identities=19%  Similarity=0.293  Sum_probs=230.3

Q ss_pred             CcEEEEECCCCeeEEEeecC-CCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCcc
Q 002782           82 REIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS  159 (882)
Q Consensus        82 g~i~iwd~~~~~~~~~~~~h-~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~  159 (882)
                      ..+.+||+.+|....++++. ...-.++..- .+.|++++. .-..|.+|.+......+...--.++|.+++-+|+|.  
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~--   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY--   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce--
Confidence            45999999999999999875 2222222111 235666665 446899999976655443333578899999999765  


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecC
Q 002782          160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP  239 (882)
Q Consensus       160 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  239 (882)
                      +|+.|+..|.|++|.+.+|..+..+.+|...|+++.|+.||.++++||.||.|.+|.+.+.                   
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-------------------  155 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-------------------  155 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-------------------
Confidence            4888889999999999999999999999999999999999999999999999999986320                   


Q ss_pred             CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782          240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL  319 (882)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (882)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (476)
T KOG0646|consen  156 --------------------------------------------------------------------------------  155 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcce
Q 002782          320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV  399 (882)
Q Consensus       320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v  399 (882)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (476)
T KOG0646|consen  156 --------------------------------------------------------------------------------  155 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCC
Q 002782          400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDA  478 (882)
Q Consensus       400 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~  478 (882)
                                     +.+..++        +-.++..+..|.-+|+.+...+.+ ...++++|.|.++++||+..+    
T Consensus       156 ---------------v~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----  208 (476)
T KOG0646|consen  156 ---------------VSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----  208 (476)
T ss_pred             ---------------cccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----
Confidence                           0000000        111222233455555555554432 236999999999999999876    


Q ss_pred             CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC----------------ceeEEEEecccC--ceE
Q 002782          479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------------LVSVVTFRGHKR--GIW  540 (882)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~----------------~~~~~~~~~h~~--~v~  540 (882)
                             ...........+.+++++|-++.+.+|+.+|.|.+.++..                +..+..+.||..  +|+
T Consensus       209 -------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  209 -------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             -------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence                   2222233556899999999999999999999999987643                345667889988  999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEE-eecCCeEEEEEc
Q 002782          541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTV  607 (882)
Q Consensus       541 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~iwd~  607 (882)
                      |++++-||.+|++|+.||.|+|||+.+.+|++++....++|+.+.+.|--+-.+. -+..-.+-.|++
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence            9999999999999999999999999999999999877889999999664333222 222234455544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-25  Score=202.49  Aligned_cols=249  Identities=25%  Similarity=0.402  Sum_probs=204.0

Q ss_pred             eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc---eEEeeeecccccEEEEEEc-cCCCcEEEEeeCCCeEE
Q 002782          392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK  467 (882)
Q Consensus       392 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~s-~~~~~~l~s~~~dg~i~  467 (882)
                      -..|.+.|....  ..--|++ |++++.|++|+|+...+.   ..+..+.+|.++|+.++|. |.-..+|++++.||.|.
T Consensus         7 dt~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    7 DTQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            346777777665  4455777 999999999999998754   5678899999999999995 55556999999999999


Q ss_pred             EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCc---eeEEEEecccCceEEE
Q 002782          468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSV  542 (882)
Q Consensus       468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l  542 (882)
                      +|.-..+        ..........|...|++++|.|.  |-.||+++.||.|.|.+.++.   ........|.-+|+++
T Consensus        84 iWke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   84 IWKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             EEecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            9997654        34456667889999999999996  578999999999999988654   2234456799999999


Q ss_pred             EEcCC---C-----------CEEEEeeCCCcEEEEecCCC--ceeeEeecCcCCEEEEEEEeCC----CEEEEeecCCeE
Q 002782          543 EFSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLV  602 (882)
Q Consensus       543 ~~s~~---~-----------~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~g----~~l~s~~~dg~i  602 (882)
                      +|.|.   |           +.|++|+.|..|+||+..++  ..-++|++|.+.|..++|.|.-    .+|++++.||++
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            99996   4           57999999999999999876  3446699999999999999964    479999999999


Q ss_pred             EEEEcCCC--e-eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          603 KLWTVRTG--E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       603 ~iwd~~~~--~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      .||.....  + ....+......+|.+.||..|+.|+.++.|+.+.+|+-..
T Consensus       236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99986521  1 1223344678899999999999999999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-23  Score=185.12  Aligned_cols=284  Identities=20%  Similarity=0.285  Sum_probs=229.1

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC------ce-----e----eeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------MS-----C----SYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------~~-----~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                      ....|..++|.| .+.+.++|+++..+++.....      +.     .    ...-.-|.+.|.|.+  |+|.|.. +++
T Consensus        31 dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~gel-iat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGEL-IAT  106 (350)
T ss_pred             chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCe-EEe
Confidence            446788899988 778999999999999864321      11     0    112235889999998  9999997 999


Q ss_pred             eecCCeEEEEeCCCceEE-----eeeecccccEEEEEEccC---CCcEEEEee-CCCeEEEEecCCCCCCCCCcccccch
Q 002782          417 GSKDNSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKK---LQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~s~~---~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~  487 (882)
                      |+.|.+|++..++...+-     ..+.-|.+.|..++|-.+   +..+|++++ .|..|++-|...+.          ..
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~----------~~  176 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ----------GF  176 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----------cc
Confidence            999999999876654432     246679999999999543   344666664 45666666766543          45


Q ss_pred             hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--c-----cCceEEEEEcCCCCEEEEeeCCCcE
Q 002782          488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H-----KRGIWSVEFSPVDQVVITASGDKTI  560 (882)
Q Consensus       488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~l~~s~~~~~l~s~~~d~~i  560 (882)
                      ..+.+|.+.|.++ ++-+|-++++|++|.+|++||++-...+.++..  |     .+.|.+++..|.|++|++|-.|...
T Consensus       177 ~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc  255 (350)
T KOG0641|consen  177 HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC  255 (350)
T ss_pred             eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence            5567888888776 355788999999999999999988877777653  2     3579999999999999999999999


Q ss_pred             EEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC----eeEEEeccCCCceEEEEEcCCCCEEE
Q 002782          561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYDKHEDKIWALAVGKKTEMFA  636 (882)
Q Consensus       561 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~  636 (882)
                      .+||++.++.++.|..|...|.++.|+|...||++++.|..|++-|+...    -.+.....|.+.+..+.|+|..--++
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi  335 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI  335 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence            99999999999999999999999999999999999999999999998632    23444557999999999999999999


Q ss_pred             EEeCCCCEEEEECC
Q 002782          637 TGGSDALVNLWHDS  650 (882)
Q Consensus       637 s~~~dg~i~iw~~~  650 (882)
                      +.+.|.++.+|-+.
T Consensus       336 sssadkt~tlwa~~  349 (350)
T KOG0641|consen  336 SSSADKTATLWALN  349 (350)
T ss_pred             eccCcceEEEeccC
Confidence            99999999999764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.94  E-value=9.2e-23  Score=208.29  Aligned_cols=477  Identities=13%  Similarity=0.153  Sum_probs=304.8

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG  103 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~  103 (882)
                      .++|-|||..|+.+.++.+.+||+..|.++.++++|.+.|.|+|||.||+.+|+|+.|..|.+|+-+-.-. ... .|..
T Consensus        17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D   94 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHND   94 (1081)
T ss_pred             eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCC
Confidence            49999999999999999999999999999999999999999999999999999999999999998543222 122 3899


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEE
Q 002782          104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT  183 (882)
Q Consensus       104 ~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~  183 (882)
                      .|.||.|+|-...|++++- ...-+|..+.......  .....+.+++|..||..  ++.|-.+|+|.+=+- +++....
T Consensus        95 ~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqy--lalG~~nGTIsiRNk-~gEek~~  168 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQY--LALGMFNGTISIRNK-NGEEKVK  168 (1081)
T ss_pred             eeeEeecCchHHHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcE--EEEeccCceEEeecC-CCCcceE
Confidence            9999999999999999875 4466888765433211  13467888999988765  999999999999864 3443333


Q ss_pred             e---cCcccceEEEEEccCC-----CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782          184 L---DKHFSRVTSMAITSDG-----STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT  255 (882)
Q Consensus       184 l---~~h~~~v~~l~~s~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (882)
                      +   .+..++|++++|+|..     ..++...-..++.++.+.....-+.....-...++...++|.             
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-------------  235 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-------------  235 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-------------
Confidence            3   3467799999999864     467777778888888876554444444444555666666665             


Q ss_pred             hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782          256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  335 (882)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  335 (882)
                                ++..||.++.+.+|..++-.+-..           .+...-+..+...|+++.++.+..||++..|++..
T Consensus       236 ----------y~LiGGsdk~L~~fTR~GvrLGTv-----------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  236 ----------YILLGGSDKQLSLFTRDGVRLGTV-----------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ----------EEEEccCCCceEEEeecCeEEeec-----------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence                      788999999999998665422111           12335677888899999999999999999998764


Q ss_pred             ccccc------------ceeeeeeeecccCCceEEEEE---eCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC-CCcce
Q 002782          336 VPEKK------------MELILSKRLVGYNEEILDLKF---LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIV  399 (882)
Q Consensus       336 ~~~~~------------~~~~~~~~~~~~~~~i~~~~~---~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v  399 (882)
                      ..-..            ..........+....|.+-..   ..--.+.+++.-. ..|.+|.+.++.....-.. .....
T Consensus       295 STVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp-eki~iYel~se~~~~mhY~v~ekI~  373 (1081)
T KOG1538|consen  295 STVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP-EKILIYELYSEDLSDMHYRVKEKII  373 (1081)
T ss_pred             hHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc-ceEEEEeccccccccchhHHHHHHH
Confidence            32100            000000000111111111000   0012234454443 4677777765543221100 00000


Q ss_pred             EEeeee-eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEE--EEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782          400 LCLDTC-ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFDGLSD  476 (882)
Q Consensus       400 ~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v--~~s~~~~~~l~s~~~dg~i~~wd~~~~~~  476 (882)
                      ..+++. ..-.++. ++. +.+..+..+|+..-.... . .-.+-|.-+  .-.|-++.-++.|..+|.|.-.=++..  
T Consensus       374 kkf~cSLlVVc~~H-iVl-CqekrLqClDF~Gvk~Re-W-~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~--  447 (1081)
T KOG1538|consen  374 KKFECSLLVVCANH-IVL-CQEKRLQCLDFSGVKERE-W-QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNL--  447 (1081)
T ss_pred             hhccceEEEEEcCe-EEE-Ecccceeeecccchhhhh-h-hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCC--
Confidence            000000 1111222 222 345566666655321100 0 000111111  113445556888888887654333322  


Q ss_pred             CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782          477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  556 (882)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  556 (882)
                               ....+......|.|+.++.+.+.||+....++..++|+.+++.+..    ..++.+++|+....-++.-+.
T Consensus       448 ---------~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q----Epg~nSV~wNT~~E~MlcfT~  514 (1081)
T KOG1538|consen  448 ---------FPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ----EPGANSVAWNTQCEDMLCFTG  514 (1081)
T ss_pred             ---------chhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee----cCCCceEEeeccccceEEEec
Confidence                     1222233456899999999999999999999999999999887653    456888999875443333333


Q ss_pred             CCcEEE
Q 002782          557 DKTIKI  562 (882)
Q Consensus       557 d~~i~i  562 (882)
                      .|.+.|
T Consensus       515 ~g~L~V  520 (1081)
T KOG1538|consen  515 GGYLNV  520 (1081)
T ss_pred             CCceEE
Confidence            355444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=6.9e-25  Score=215.86  Aligned_cols=252  Identities=25%  Similarity=0.449  Sum_probs=212.2

Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCcee----------eeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC----------SYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                      .....|.++|..+++.|.+..++++.+..+.+.|||......          ...+.+|...-.++.  +++.....+++
T Consensus       118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls  195 (422)
T KOG0264|consen  118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS  195 (422)
T ss_pred             EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence            344568899999999999999999999999999999764221          226789998767776  77776667999


Q ss_pred             eecCCeEEEEeCCCce-------EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782          417 GSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  489 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  489 (882)
                      ++.|++|++||+....       ....+.+|...|..++|++....++++++.|+.+.+||++..        ..+....
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~  267 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS  267 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence            9999999999987532       345678999999999999998889999999999999999863        1225566


Q ss_pred             hhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecC
Q 002782          490 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       490 ~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~  566 (882)
                      ..+|..+|+|++|+| ++.+||+||.|++|++||+++. .++.++.+|...|..|.|||. ...||+++.|+.+.+||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            788999999999999 6688999999999999999986 567889999999999999996 4688999999999999986


Q ss_pred             CC--------------ceeeEeecCcCCEEEEEEEeCCCE-EEEeecCCeEEEEEcC
Q 002782          567 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR  608 (882)
Q Consensus       567 ~~--------------~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~iwd~~  608 (882)
                      .-              +++..--||...|..+.|+|+..+ ++|++.|+.+.||...
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            42              234555689999999999998775 6788899999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-24  Score=214.41  Aligned_cols=253  Identities=20%  Similarity=0.338  Sum_probs=212.6

Q ss_pred             CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782          375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  454 (882)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~  454 (882)
                      ...+.+|.+..........--.+++.|+.  .+|.|.+ ++.|+..|.+++|.+.+|..+..+.+|-..|+++.|+.|+.
T Consensus        60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~--s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs  136 (476)
T KOG0646|consen   60 RPLLHVWEILKKDQVVQYIVLPGPVHALA--SSNLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS  136 (476)
T ss_pred             CccccccccCchhhhhhhcccccceeeee--cCCCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc
Confidence            34666777665544433333456788887  7788876 88888999999999999999999999999999999999987


Q ss_pred             cEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCceeEEEE
Q 002782          455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTF  532 (882)
Q Consensus       455 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~~~~~~~  532 (882)
                       ++++|+.||.|.+|.+...-... ......+...+..|.-+|+.+...+.  ..+++++|.|.++++||+..+..+.++
T Consensus       137 -~iiTgskDg~V~vW~l~~lv~a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  137 -HIITGSKDGAVLVWLLTDLVSAD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             -EEEecCCCccEEEEEEEeecccc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence             89999999999999987542211 11245577888899999999998875  368999999999999999999988887


Q ss_pred             ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC----------------CceeeEeecCcC--CEEEEEEEeCCCEEE
Q 002782          533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----------------GSCLKTFEGHTS--SVLRASFLTRGAQIV  594 (882)
Q Consensus       533 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~h~~--~v~~~~~s~~g~~l~  594 (882)
                      . ....+.+++.+|.++.++.|+.+|.|.+.++..                +..+..+.||.+  .|+|++.+-||..|+
T Consensus       215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            7 567899999999999999999999999887643                234667889998  999999999999999


Q ss_pred             EeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCC
Q 002782          595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE  633 (882)
Q Consensus       595 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~  633 (882)
                      +|+.||.|.|||+.+.+|++++....++|+.+.+.|-.+
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            999999999999999999999987789999999866443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=195.87  Aligned_cols=290  Identities=17%  Similarity=0.271  Sum_probs=215.5

Q ss_pred             eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--eeee--CCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      ..+.||.+.|.+++|++ +++.|++++.|+.|++|++......  +.++  -.-+..+.+.  |.|+.+.++++.....+
T Consensus        80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~--FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV--FAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE--ECCCcceEEEEEccCCE
Confidence            45789999999999998 8999999999999999999764321  1111  1122344445  88999887777777788


Q ss_pred             EEEEeCCCceE------------EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh
Q 002782          423 VRLWDSESRCC------------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  490 (882)
Q Consensus       423 i~iwd~~~~~~------------~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  490 (882)
                      +++|-+...+.            ...-..|.-.+..+-....+. ++++++.|..|.+|++...           .....
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lkGq-----------~L~~i  224 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLKGQ-----------LLQSI  224 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecCCc-----------eeeee
Confidence            99997543211            011123555666666555544 8999999999999999743           22222


Q ss_pred             hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC---C-----ceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782          491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---D-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI  562 (882)
Q Consensus       491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~---~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i  562 (882)
                      ......-...++||+|+++|+++-.-.|++|.+-   .     -..+..++||...|..++|||+...+++.|.||++++
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence            3333445678999999999999999999999862   2     2446678999999999999999999999999999999


Q ss_pred             EecCC-------CceeeEee----cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcC
Q 002782          563 WSISD-------GSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGK  630 (882)
Q Consensus       563 wd~~~-------~~~~~~~~----~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~  630 (882)
                      ||++-       .+.++++.    .-.+....+.++|.|..|+.+.. ..++++..++|+....+. .|...|.+++|++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence            99752       23333332    22334458999999998876553 579999999998777764 6899999999999


Q ss_pred             CCCEEEEEeCCCCEEEEECCCHH
Q 002782          631 KTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       631 ~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      +|++++|+| |..+++..-..+-
T Consensus       384 ~g~~~atcG-dr~vrv~~ntpg~  405 (420)
T KOG2096|consen  384 DGKYIATCG-DRYVRVIRNTPGW  405 (420)
T ss_pred             CCcEEeeec-ceeeeeecCCCch
Confidence            999999988 5667888755554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2e-23  Score=195.14  Aligned_cols=267  Identities=22%  Similarity=0.283  Sum_probs=214.0

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                      .+.|.++.|. +..+.|++++.||.+++|+....... ..-.|..++.+.+  |.+ ... +++|+-||.|+.+|+.++.
T Consensus        13 ~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~--F~d-~~~-~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   13 EDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCA--FAD-EST-IVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             hhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeee--ccC-Cce-EEEeccCceEEEEEecCCc
Confidence            4678999999 57777888889999999999887443 3345788888886  555 344 8999999999999999886


Q ss_pred             EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                      ... +..|..+|.++..++... .+++|+.|++|++||.....           ........+.|.++..  .|..|++|
T Consensus        87 ~~~-igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-----------~~~~~d~~kkVy~~~v--~g~~LvVg  151 (323)
T KOG1036|consen   87 EDQ-IGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-----------VVGTFDQGKKVYCMDV--SGNRLVVG  151 (323)
T ss_pred             cee-eccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-----------cccccccCceEEEEec--cCCEEEEe
Confidence            543 456999999999997644 79999999999999987421           1111223346777765  46789999


Q ss_pred             cCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC----ceeeEeecCcC-------
Q 002782          513 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHTS-------  579 (882)
Q Consensus       513 s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~-------  579 (882)
                      +.|..+.+||+++.......+  .-+-.+.|+++-|++.=.++++-||.|.+=.++..    +.-..|+.|..       
T Consensus       152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~  231 (323)
T KOG1036|consen  152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI  231 (323)
T ss_pred             ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence            999999999999876544322  23456899999998888999999999988777665    33345666643       


Q ss_pred             --CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782          580 --SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  640 (882)
Q Consensus       580 --~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  640 (882)
                        +|++++|+|-...|+|||.||.|.+||+.+.+.+..+......|.+++|+.||..||+++.
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence              6899999999899999999999999999999999999888888999999999999998874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-23  Score=195.33  Aligned_cols=305  Identities=20%  Similarity=0.264  Sum_probs=210.9

Q ss_pred             EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccc
Q 002782          182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  261 (882)
Q Consensus       182 ~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (882)
                      ..+++|.+.|++++|+.||+.|++++.|++|++|++++.......-..                                
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--------------------------------  127 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR--------------------------------  127 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh--------------------------------
Confidence            467899999999999999999999999999999999874321100000                                


Q ss_pred             ccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEE-EEeCCeEEEEEeccccccc
Q 002782          262 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC-VTADQQLLLYTTVEVPEKK  340 (882)
Q Consensus       262 ~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~~~~~~  340 (882)
                                                            ..-.-...+...|.|+...+++ +.....+++|.+.......
T Consensus       128 --------------------------------------~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~  169 (420)
T KOG2096|consen  128 --------------------------------------QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS  169 (420)
T ss_pred             --------------------------------------ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence                                                  0000012355566666665533 3345667777766544322


Q ss_pred             ceeeeee-----eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEE
Q 002782          341 MELILSK-----RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  415 (882)
Q Consensus       341 ~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  415 (882)
                      .......     ....|.-.+.++-. ..+..++++++.+..|.+|++. |+.+..+......-+..+  .+|+|+. ++
T Consensus       170 ~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa--vSP~GRF-ia  244 (420)
T KOG2096|consen  170 GSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA--VSPDGRF-IA  244 (420)
T ss_pred             CCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee--eCCCCcE-EE
Confidence            2211111     11223444455443 3478899999999999999998 776666655444444444  7899987 88


Q ss_pred             EeecCCeEEEEeCC---Cc-----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782          416 TGSKDNSVRLWDSE---SR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       416 ~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  487 (882)
                      +++-.--|.+|..-   .|     ..+..+.+|...|...+|+++.. .+++.+.||++++||.+-.-.....+..++.-
T Consensus       245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g  323 (420)
T KOG2096|consen  245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG  323 (420)
T ss_pred             EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence            88777889999753   22     23446789999999999999976 79999999999999987543222222222221


Q ss_pred             -hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-ccCceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782          488 -AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS  564 (882)
Q Consensus       488 -~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  564 (882)
                       ..+.+.+.....++.+|+|+.||.+. ...+++|..++++....++. |...|.+++|+++|+++++++ |..++++.
T Consensus       324 ~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  324 SAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence             22233344555899999999999875 46799999999887776654 899999999999999999986 47888876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.9e-22  Score=210.90  Aligned_cols=290  Identities=19%  Similarity=0.242  Sum_probs=212.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 002782           72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI  150 (882)
Q Consensus        72 ~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l-asg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l  150 (882)
                      ++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            35678999999999999999999999886644 6789999999976 5667889999999999988877765544 5678


Q ss_pred             EEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC-eEEEEecCCceeeeeecCc
Q 002782          151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY  229 (882)
Q Consensus       151 ~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~  229 (882)
                      +|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|.+++++..++ .+.+||..+.+.....   
T Consensus        79 ~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---  153 (300)
T TIGR03866        79 ALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---  153 (300)
T ss_pred             EECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---
Confidence            99998763 4455567899999999998888777533 3468899999999999887764 3455565432211000   


Q ss_pred             ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeE
Q 002782          230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA  309 (882)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (882)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (300)
T TIGR03866       154 --------------------------------------------------------------------------------  153 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee
Q 002782          310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS  389 (882)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~  389 (882)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (300)
T TIGR03866       154 --------------------------------------------------------------------------------  153 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc-----c--cEEEEEEccCCCcEEEEeeC
Q 002782          390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-----G--AVGAVAFSKKLQNFLVSGSS  462 (882)
Q Consensus       390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~--~v~~v~~s~~~~~~l~s~~~  462 (882)
                         .. ...+.++.  ++++++.+++++..++.|.+||+.+++.+..+..+.     .  ....++|+|+++..+++.+.
T Consensus       154 ---~~-~~~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       154 ---LV-DQRPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             ---Ec-CCCccEEE--ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence               00 00011233  678888755666679999999999988766554321     1  23468899998855566666


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWS  541 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  541 (882)
                      ++.+.+||..+..          .... ..+...+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+... ...+.
T Consensus       228 ~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~  295 (300)
T TIGR03866       228 ANRVAVVDAKTYE----------VLDY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWG  295 (300)
T ss_pred             CCeEEEEECCCCc----------EEEE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccce
Confidence            7889999986542          1111 1234578899999999999876 46899999999999999998854 55688


Q ss_pred             EEEcC
Q 002782          542 VEFSP  546 (882)
Q Consensus       542 l~~s~  546 (882)
                      ++|+|
T Consensus       296 ~~~~~  300 (300)
T TIGR03866       296 VVVRP  300 (300)
T ss_pred             eEeCC
Confidence            88875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.4e-25  Score=229.98  Aligned_cols=255  Identities=25%  Similarity=0.440  Sum_probs=225.0

Q ss_pred             EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782          369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  448 (882)
Q Consensus       369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  448 (882)
                      ++.......+++|+..      .+..|...+.|+.  .-..++. +++|+.|..+.+|.+.....+..+.+|.++|.++.
T Consensus         7 ~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk--~~~s~r~-~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~   77 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTR------EFVAHSAAVGCLK--IRKSSRS-LVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT   77 (825)
T ss_pred             cceeeeeeccccccch------hhhhhhhhhceee--eecccee-eccCCCceeeccccccCCchhheeeccCCcceeee
Confidence            3334444566677754      3345777777776  3344454 99999999999999988888888999999999999


Q ss_pred             EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee
Q 002782          449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS  528 (882)
Q Consensus       449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~  528 (882)
                      |++... ++++|+.+|+|++||+....          ...++.+|...+.++.|+|-+.+.|.|+.|..+++||.+...+
T Consensus        78 f~~~E~-LlaagsasgtiK~wDleeAk----------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc  146 (825)
T KOG0267|consen   78 FDTSER-LLAAGSASGTIKVWDLEEAK----------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC  146 (825)
T ss_pred             cCcchh-hhcccccCCceeeeehhhhh----------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence            999855 89999999999999998542          5668889999999999999999999999999999999998889


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      ...+.+|...|..+.|+|+|++++.++.|.+++|||+..|+.+..|.+|.+.+..+.|+|..-.+++|+.|++|++||++
T Consensus       147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCC
Q 002782          609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL  643 (882)
Q Consensus       609 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  643 (882)
                      +.+.+........+|.+++|+|++..+.+|..+..
T Consensus       227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence            99999999888899999999999999888876653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4.2e-23  Score=190.90  Aligned_cols=254  Identities=19%  Similarity=0.280  Sum_probs=198.9

Q ss_pred             ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC
Q 002782          351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  430 (882)
Q Consensus       351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  430 (882)
                      +|.-.|.++-|.|-+...+.+++-|..+++||.++.+....+.- .+.|.+-++........++++|..+-.|++.|+.+
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            46667788888888889999999999999999998887665542 34454444223333445699999999999999999


Q ss_pred             ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC-----CCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782          431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVAAHGKDINSLAVAPN  505 (882)
Q Consensus       431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  505 (882)
                      |..-..+.+|.+.|.++.|+|....+|++|+.||.|++||++....     +.......+......+|.+.++.++|+.+
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD  257 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence            9999999999999999999999998999999999999999986521     11111122233356789999999999999


Q ss_pred             CcEEEEEcCCCcEEEEeCCCceeEEEEec---ccC----ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc
Q 002782          506 DSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT  578 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~----~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  578 (882)
                      +.++++.+.|..+++|+..+|.....-.+   |+.    .+. +. +.+...++---.++.+.++++-+|..++.+.+|-
T Consensus       258 ~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~  335 (397)
T KOG4283|consen  258 ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL  335 (397)
T ss_pred             chhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence            99999999999999999988754322111   111    121 22 3344445545566899999999999999999999


Q ss_pred             CCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          579 SSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       579 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      ..|.+..+-|+-+.+.+++.|+.|..|-.
T Consensus       336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  336 KRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceeeEEeecCchhhhhccccCCccccccc
Confidence            99999999999999999999999999976

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.9e-24  Score=210.72  Aligned_cols=279  Identities=18%  Similarity=0.282  Sum_probs=230.5

Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeC--CCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  427 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd  427 (882)
                      .+++.+..-++...+++.+|+. |.|+|||+...   ..+..+..  ....+.++.  .+|+|+. |++|+.-.++.|||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiWD  493 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIWD  493 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeeee
Confidence            3555666556657778888877 99999998643   22333332  344566666  8899998 88888899999999


Q ss_pred             CCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782          428 SESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  505 (882)
Q Consensus       428 ~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  505 (882)
                      +.....  ...+....-...+++.+||.+ +.+++..||.|.|||+....          ....+.+|...+.||.+++|
T Consensus       494 LAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~----------~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT----------LVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce----------eeecccCCCCCceeEEecCC
Confidence            986543  333444445677889999976 88999999999999998543          66778999999999999999


Q ss_pred             CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEE
Q 002782          506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS  585 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  585 (882)
                      |..|.+|+.|.+|+-||++++..+.... ..+.|.++..+|.+.+|+.|-.++.+.|-... +.....+.-|...|.++.
T Consensus       563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlK  640 (705)
T KOG0639|consen  563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLK  640 (705)
T ss_pred             CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEE
Confidence            9999999999999999999987766544 56789999999999999999999999998864 445556667999999999


Q ss_pred             EEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       586 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      |.+.|+++++.+.|..+..|...-|..+.... ..+.|.++.+|.|+++|+||+.|....||.+
T Consensus       641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999999999999888876 5788999999999999999999999888875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=213.59  Aligned_cols=291  Identities=22%  Similarity=0.295  Sum_probs=226.1

Q ss_pred             CCCCcEEEEEEcCCcEEEEeCCCceee------eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEee
Q 002782          363 GEEEQYLAVATNIEQVQVYDLSSMSCS------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV  436 (882)
Q Consensus       363 ~~~~~~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  436 (882)
                      +....+|+++..+|.|.++|.......      .....|.+.|..+.  +.| |+.+|++++.|.++++||+.+..++..
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~  137 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGG  137 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecc
Confidence            346778999999999999998754433      55678999999998  777 666799999999999999999998877


Q ss_pred             --eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC---------------Ccc--cccchhhhhhcCCCe
Q 002782          437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPM--NLKAKAVVAAHGKDI  497 (882)
Q Consensus       437 --~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~i  497 (882)
                        +.+|.+.|.+++|.|..+..|++|+.||.|.|||+........               .+.  ..+......++...|
T Consensus       138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence              8899999999999999999999999999999999875431100               000  111222334566666


Q ss_pred             eE---EEEcCCCcEEEEEcC-CCcEEEEeCCCceeEEE--------Eecc---cCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782          498 NS---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKI  562 (882)
Q Consensus       498 ~~---~~~s~~~~~la~~s~-dg~i~iwd~~~~~~~~~--------~~~h---~~~v~~l~~s~~~~~l~s~~~d~~i~i  562 (882)
                      .+   +.+..|...||+++. |+.|+|||++.......        +..|   ..++.++.....|.+|++.+.|++|+.
T Consensus       218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~  297 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF  297 (720)
T ss_pred             eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence            66   667778889999887 99999999986543222        2223   346788888888999999999999999


Q ss_pred             EecCCC--ceeeEeecCcCCEEE--EEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCCCceEEEEEcCCC-CEEE
Q 002782          563 WSISDG--SCLKTFEGHTSSVLR--ASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKT-EMFA  636 (882)
Q Consensus       563 wd~~~~--~~~~~~~~h~~~v~~--~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~-~~l~  636 (882)
                      |++.+-  ..+..+.++...-..  -..+||+.+|++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|.. .-++
T Consensus       298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~  377 (720)
T KOG0321|consen  298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA  377 (720)
T ss_pred             EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence            999764  345556555443222  2568999999999999999999998865 456677999999999998743 3578


Q ss_pred             EEeCCCCEEEEECCCHHHHH
Q 002782          637 TGGSDALVNLWHDSTAAERE  656 (882)
Q Consensus       637 s~~~dg~i~iw~~~~~~~~~  656 (882)
                      |++.|..+++|++..+.++.
T Consensus       378 TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  378 TCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             eeccCcceEEEeccCchhhc
Confidence            88999999999997766544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=3.4e-22  Score=210.33  Aligned_cols=270  Identities=13%  Similarity=0.156  Sum_probs=208.2

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  446 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  446 (882)
                      ..+++++.++.+.+||+.+++....+..+.. +.++.  ++|+++.++++++.++.|++||..+++....+..+.. +..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence            4678888899999999999988888876654 45566  8899987567888899999999999888776655443 567


Q ss_pred             EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC-cEEEEeCCC
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD  525 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg-~i~iwd~~~  525 (882)
                      ++++|+++.++++++.++.+++||+....          ..... .+...+.+++|+|+|+++++++.++ .+.+||..+
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            89999988555666778999999987532          11111 1233467899999999999988775 467789988


Q ss_pred             ceeEEEEecccCceEEEEEcCCCCEEEEe-eCCCcEEEEecCCCceeeEeecCc-----C--CEEEEEEEeCCCEEEE-e
Q 002782          526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHT-----S--SVLRASFLTRGAQIVS-C  596 (882)
Q Consensus       526 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~-----~--~v~~~~~s~~g~~l~s-~  596 (882)
                      ++....+.. ...+.+++|+|++++|+++ ..++.|++||+.+++++..+..+.     .  ....++|+|+|++++. .
T Consensus       147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            877665543 3346789999999988654 468999999999998877665322     1  2346889999998654 4


Q ss_pred             ecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEE-eCCCCEEEEECCCHH
Q 002782          597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAA  653 (882)
Q Consensus       597 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iw~~~~~~  653 (882)
                      +.++.+.+||+.+++.+..+. +...+++++|+|+|++|+++ +.+|.|.+||..+++
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            556789999999998876654 45679999999999999886 568999999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.2e-23  Score=208.00  Aligned_cols=280  Identities=23%  Similarity=0.377  Sum_probs=222.4

Q ss_pred             CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      .|.+-|.++++|...+++.+|+. |.|+|||+...   .++..+..  ...-|.++...|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            38889999999999999999987 78999999643   34444432  35678999999999999999999999999997


Q ss_pred             CCeEE--EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782          133 GGFCT--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       133 ~~~~~--~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .....  ..+........+++.+||.+.  .+++..||.|.|||+.+...++.|++|...+.|+.+++||..|.+||-|+
T Consensus       496 apTprikaeltssapaCyALa~spDakv--cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKV--CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccce--eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            66543  223333345677888998654  99999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782          211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  290 (882)
Q Consensus       211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~  290 (882)
                      +|+.||++++..+.....                                                              
T Consensus       574 tvRcWDlregrqlqqhdF--------------------------------------------------------------  591 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDF--------------------------------------------------------------  591 (705)
T ss_pred             ceeehhhhhhhhhhhhhh--------------------------------------------------------------
Confidence            999999987765443222                                                              


Q ss_pred             CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782          291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA  370 (882)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  370 (882)
                                                                                    ...|.++.++| .+.+++
T Consensus       592 --------------------------------------------------------------~SQIfSLg~cP-~~dWla  608 (705)
T KOG0639|consen  592 --------------------------------------------------------------SSQIFSLGYCP-TGDWLA  608 (705)
T ss_pred             --------------------------------------------------------------hhhheecccCC-Ccccee
Confidence                                                                          12333444444 555666


Q ss_pred             EEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEc
Q 002782          371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS  450 (882)
Q Consensus       371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s  450 (882)
                      +|-.++.+.+..... ...+.+..|...|.++.  |.+.|++ +++.++|..+..|...-|..+.... ..+.|.++.++
T Consensus       609 vGMens~vevlh~sk-p~kyqlhlheScVLSlK--Fa~cGkw-fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS  683 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSK-PEKYQLHLHESCVLSLK--FAYCGKW-FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDIS  683 (705)
T ss_pred             eecccCcEEEEecCC-ccceeecccccEEEEEE--ecccCce-eeecCchhhhhhccCccccceeecc-ccCcceeeeec
Confidence            666666666665433 33446777889999998  8899998 8999999999999998887765543 45789999999


Q ss_pred             cCCCcEEEEeeCCCeEEEEec
Q 002782          451 KKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       451 ~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      .+.+ ++++|+.|+.-.+|.+
T Consensus       684 ~ddk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  684 FDDK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCce-EEEecCCCcceEEEEE
Confidence            9876 8999999998888865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.9e-24  Score=190.38  Aligned_cols=144  Identities=23%  Similarity=0.296  Sum_probs=125.6

Q ss_pred             ecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 002782           56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVWD  130 (882)
Q Consensus        56 l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~l~fs~--~~~~lasg~~dg~v~vwd  130 (882)
                      -..|.+.|..+.+.-.|++||+++.|++|+|+.+.+.   .++.++.||.+||..++|-.  -|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3568999999999999999999999999999999754   57889999999999999976  899999999999999999


Q ss_pred             CCCCeE--EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC---eEEEEecCcccceEEEEEccC
Q 002782          131 VDGGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSD  199 (882)
Q Consensus       131 ~~~~~~--~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~---~~~~~l~~h~~~v~~l~~s~~  199 (882)
                      -++|+-  .+....|.+.|++++|.|.+-..+|++++.||.|.|.+..+.   ........|.-.|++++|.|.
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            988853  345568999999999999988899999999999999988654   123345789999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.9e-22  Score=188.78  Aligned_cols=270  Identities=21%  Similarity=0.317  Sum_probs=222.4

Q ss_pred             cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782          303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  382 (882)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  382 (882)
                      +...+..+.++|..+.|++.+-||.+.+|+....        ..+....|..++.+++|.+  ...+++|+-||.|+.+|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEE
Confidence            3578899999999999999999999999998754        2234445788999999984  67899999999999999


Q ss_pred             CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782          383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  462 (882)
Q Consensus       383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~  462 (882)
                      +.++... .+..|..++.|+.  ..+.... +++|+.|++|++||.........+.. ...|.++....+   .|+.|+.
T Consensus        82 ln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~---~LvVg~~  153 (323)
T KOG1036|consen   82 LNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN---RLVVGTS  153 (323)
T ss_pred             ecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEecccccccccccc-CceEEEEeccCC---EEEEeec
Confidence            9988765 5678999999998  6666665 99999999999999987555554443 347888877654   6999999


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc----eeEEEEeccc--
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHK--  536 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~----~~~~~~~~h~--  536 (882)
                      |..+.+||++......        ........-.+.|+++-|++.=.++++-||.|.+=.++..    .....|+.|.  
T Consensus       154 ~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~  225 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS  225 (323)
T ss_pred             CceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence            9999999998764321        1112223456899999999999999999999998777665    4455677664  


Q ss_pred             -------CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782          537 -------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  598 (882)
Q Consensus       537 -------~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  598 (882)
                             -+|.+|+|+|-.+.++||+.||.|.+||+.+.+.+..|.....+|..++|+.+|..||.++.
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                   37999999999999999999999999999999999999888889999999999999999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.2e-22  Score=205.62  Aligned_cols=313  Identities=21%  Similarity=0.296  Sum_probs=231.1

Q ss_pred             eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 002782           54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWDV  131 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~--~lasg~~dg~v~vwd~  131 (882)
                      ..+.||++.|.|+...|.|.+||+|+.||+|+||.+.+|.+++++. -.+.|.|++|+|.+.  .||++-... +.|-+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence            4567999999999999999999999999999999999999999987 457999999999776  455544433 666665


Q ss_pred             CCCeEEEEeecCCCcEEEEEEecCCCccEEEEE----eCCCcEEEEECCCCe----EEEEecCcccceEEEEEccCCCEE
Q 002782          132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITSDGSTL  203 (882)
Q Consensus       132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg----s~dg~I~vwd~~~~~----~~~~l~~h~~~v~~l~~s~~~~~l  203 (882)
                      .-|..+..-.     -          ..+|+++    ..++.+..|.-.+..    -+...-.|...|..+.|+..|.||
T Consensus       472 ~~G~~~e~~~-----t----------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl  536 (733)
T KOG0650|consen  472 IFGDRLEVGP-----T----------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL  536 (733)
T ss_pred             cccchhhhcc-----h----------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence            4442221100     0          0012222    235567888654221    244556688999999999999999


Q ss_pred             EEEeCCC---eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782          204 ISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN  280 (882)
Q Consensus       204 ~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~  280 (882)
                      ++...++   .|.|.++..                                                             
T Consensus       537 atV~~~~~~~~VliHQLSK-------------------------------------------------------------  555 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSK-------------------------------------------------------------  555 (733)
T ss_pred             EEeccCCCcceEEEEeccc-------------------------------------------------------------
Confidence            9887653   333333321                                                             


Q ss_pred             CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEE
Q 002782          281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK  360 (882)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  360 (882)
                                                                                                      
T Consensus       556 --------------------------------------------------------------------------------  555 (733)
T KOG0650|consen  556 --------------------------------------------------------------------------------  555 (733)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc
Q 002782          361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH  440 (882)
Q Consensus       361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  440 (882)
                                               ......+....+.+.++.  |.|.... +++++ ...|+|||+.....+..+...
T Consensus       556 -------------------------~~sQ~PF~kskG~vq~v~--FHPs~p~-lfVaT-q~~vRiYdL~kqelvKkL~tg  606 (733)
T KOG0650|consen  556 -------------------------RKSQSPFRKSKGLVQRVK--FHPSKPY-LFVAT-QRSVRIYDLSKQELVKKLLTG  606 (733)
T ss_pred             -------------------------ccccCchhhcCCceeEEE--ecCCCce-EEEEe-ccceEEEehhHHHHHHHHhcC
Confidence                                     111112222233444444  6666666 44444 457999999988877777777


Q ss_pred             cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782          441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  520 (882)
Q Consensus       441 ~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i  520 (882)
                      ...|..++++|.|.+ |+.|+.|+.+..+|+.-.         .++...+..|...+++++|++.-.++|+|+.||++.|
T Consensus       607 ~kwiS~msihp~GDn-li~gs~d~k~~WfDldls---------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDN-LILGSYDKKMCWFDLDLS---------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             CeeeeeeeecCCCCe-EEEecCCCeeEEEEcccC---------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence            889999999999885 788999999999999753         3366778889999999999999999999999999999


Q ss_pred             EeC------CC---ceeEEEEecccCc----eEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782          521 WRL------PD---LVSVVTFRGHKRG----IWSVEFSPVDQVVITASGDKTIKIW  563 (882)
Q Consensus       521 wd~------~~---~~~~~~~~~h~~~----v~~l~~s~~~~~l~s~~~d~~i~iw  563 (882)
                      |.-      ..   --++..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            852      11   2456678888765    9999999999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=214.37  Aligned_cols=276  Identities=16%  Similarity=0.205  Sum_probs=227.7

Q ss_pred             ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782          351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  429 (882)
Q Consensus       351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  429 (882)
                      .|......++|.+ ++.++.+++.+|.|++|+..+. .....+..+...+.+++    ..... |++|+.+++|..|.+.
T Consensus        11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia----~~s~~-f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA----CYSNH-FLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe----ecccc-eEEeeccceEEEeeCC
Confidence            4566677888877 5569999999999999998766 44545555788888886    33334 9999999999999999


Q ss_pred             CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782          430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  509 (882)
Q Consensus       430 ~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  509 (882)
                      ++..-..+...+-++++++|+.+|. +++.||.|-.|++-+.....          ....+.+|..+|.++.|+|++.+|
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s----------~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS----------QEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc----------hheeecccCCceeeeeEcCCCCEE
Confidence            8877767777788999999999987 79999999999999987653          566778999999999999999999


Q ss_pred             EEEcCCCcEEEEeCCCceeEEEEecc--------cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec--CcC
Q 002782          510 CTGSQDRTACVWRLPDLVSVVTFRGH--------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTS  579 (882)
Q Consensus       510 a~~s~dg~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~  579 (882)
                      |+.+.||.|++||+.++....++.+-        ...+..++|+|++..++..+.|+.|++|+..++.....+..  +..
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS  233 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence            99999999999999998777666541        45578899999999999999999999999999998887764  344


Q ss_pred             CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782          580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  647 (882)
Q Consensus       580 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  647 (882)
                      .+..++|+|+|+|||+++.||.|.|||+++-+.    ......|.+++|.|+++.+-.-...|..-+|
T Consensus       234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            489999999999999999999999999988222    2345789999999998866554444544444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=3.6e-22  Score=184.74  Aligned_cols=292  Identities=22%  Similarity=0.343  Sum_probs=219.7

Q ss_pred             ecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe------------EE---EEecCcccceEEEEEcc-CCCEEE
Q 002782          141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CV---ATLDKHFSRVTSMAITS-DGSTLI  204 (882)
Q Consensus       141 ~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~------------~~---~~l~~h~~~v~~l~~s~-~~~~l~  204 (882)
                      +.|.+.|.++...+. ...++++|+.||.|.+||++...            |+   ..-.+|.-.|.++.|-| |...+.
T Consensus        40 r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            468899999999886 45689999999999999997543            21   11245777999999998 445677


Q ss_pred             EEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc
Q 002782          205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA  284 (882)
Q Consensus       205 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~  284 (882)
                      +++.|.++++||..+.+....+..++.+..-                                                 
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYsh-------------------------------------------------  149 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSH-------------------------------------------------  149 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehh-------------------------------------------------
Confidence            8889999999999887654443332222111                                                 


Q ss_pred             eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC-
Q 002782          285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-  363 (882)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  363 (882)
                                                                                                 +++| 
T Consensus       150 ---------------------------------------------------------------------------amSp~  154 (397)
T KOG4283|consen  150 ---------------------------------------------------------------------------AMSPM  154 (397)
T ss_pred             ---------------------------------------------------------------------------hcChh
Confidence                                                                                       1111 


Q ss_pred             -CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-eEEee-----
Q 002782          364 -EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGV-----  436 (882)
Q Consensus       364 -~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~-----  436 (882)
                       ...-++|+|+.+.+|++.|+.+|.+...+.||.+.|.++.  |+|...+++++|+.||.|++||+... .+...     
T Consensus       155 a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~--Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn  232 (397)
T KOG4283|consen  155 AMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE--WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN  232 (397)
T ss_pred             hhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE--eccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence             1234788899999999999999999999999999999999  88999999999999999999998753 22222     


Q ss_pred             ---------eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782          437 ---------GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  507 (882)
Q Consensus       437 ---------~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  507 (882)
                               -.+|.+.+..++|+.++. ++++++.|..+++|+...+.....+..+.  ......| -.+. +. +.+..
T Consensus       233 ~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~--~~n~~~~-~~~~-~~-~~~s~  306 (397)
T KOG4283|consen  233 TKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPI--IHNQTTS-FAVH-IQ-SMDSD  306 (397)
T ss_pred             CccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccc--ccccccc-ceEE-Ee-ecccc
Confidence                     236888999999999987 78999999999999988764321111000  0000000 0111 22 33444


Q ss_pred             EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782          508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                      .++---.++.+.++.+-++..+..+.+|...|.|..+-|+-+.+.+|..|+.|..|..
T Consensus       307 vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  307 VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            5555556789999999999999999999999999999999999999999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.6e-22  Score=186.29  Aligned_cols=253  Identities=19%  Similarity=0.411  Sum_probs=199.5

Q ss_pred             eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC----ceEEeeeecccccEEEEEEc-cCCCcEEEEeeCCCeEE
Q 002782          393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK  467 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~s-~~~~~~l~s~~~dg~i~  467 (882)
                      .+|.+-|.++.  +...|++ +++|+.|+++.|||...    -.+....+.|.+.|..+.|. |.-...+++++.|+++.
T Consensus        10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            47888999998  8889998 99999999999999653    34666788999999999995 44445899999999999


Q ss_pred             EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC--CCcEEEEEcCCCcEEEEeCCCceeEE------EEe------
Q 002782          468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVV------TFR------  533 (882)
Q Consensus       468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~la~~s~dg~i~iwd~~~~~~~~------~~~------  533 (882)
                      +|.=...... ..........++......|+.+.|.|  -|-.+|+++.||.++||+..+.-.+.      .+.      
T Consensus        87 iWEE~~~~~~-~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   87 IWEEQEKSEE-AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeecccccc-cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9985422111 11123344555666778999999999  47899999999999999876542222      222      


Q ss_pred             -cccCceEEEEEcCC---CCEEEEeeCC-----CcEEEEecCCCc----eeeEeecCcCCEEEEEEEeCC----CEEEEe
Q 002782          534 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG----AQIVSC  596 (882)
Q Consensus       534 -~h~~~v~~l~~s~~---~~~l~s~~~d-----~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~g----~~l~s~  596 (882)
                       .+..+..|+.|+|.   .++||.|+.+     +.++||....+.    .+.++.+|..+|+.++|.|+-    ..|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence             36677889999974   4678888776     478999866542    356788999999999999963    478999


Q ss_pred             ecCCeEEEEEcCC--------------------CeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          597 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       597 ~~dg~i~iwd~~~--------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      +.|| |+||.++.                    -+.+..+..|+++||.+.|.-.|..|++.|.||++++|+..
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9999 99999872                    13456778999999999999999999999999999999754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.6e-23  Score=216.86  Aligned_cols=286  Identities=20%  Similarity=0.261  Sum_probs=223.0

Q ss_pred             EccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---cee
Q 002782          312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSC  388 (882)
Q Consensus       312 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~  388 (882)
                      ..++..++++ .....+.+|..........-....+..+.-.-.+.++.|..-..+++|+++..|.|.+||+..   ...
T Consensus        47 ~nr~~~qiv~-AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~  125 (839)
T KOG0269|consen   47 VNRDINQIVV-AGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKL  125 (839)
T ss_pred             ecCCcceeEE-ecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchh
Confidence            3344444433 334456666665543221111111222222334567778777889999999999999999987   555


Q ss_pred             eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEE
Q 002782          389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV  468 (882)
Q Consensus       389 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~  468 (882)
                      ...+..|...+.+++  |++....++++|+.||.|++||+.......++.+....|..+.|+|...+.++++...|.+++
T Consensus       126 l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lql  203 (839)
T KOG0269|consen  126 LTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQL  203 (839)
T ss_pred             hhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEE
Confidence            667889999999999  888888889999999999999999998888888999999999999988889999999999999


Q ss_pred             EecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeE--EEEecccCceEEEEEcC
Q 002782          469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV--VTFRGHKRGIWSVEFSP  546 (882)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~  546 (882)
                      ||++...         .....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+..  .++. ...+|..+.|-|
T Consensus       204 WDlRqp~---------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP  273 (839)
T KOG0269|consen  204 WDLRQPD---------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRP  273 (839)
T ss_pred             eeccCch---------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeecc
Confidence            9998642         366777899999999999999999999999999999999866433  3333 457899999999


Q ss_pred             CCCE-EEEee--CCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEcCCC
Q 002782          547 VDQV-VITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTG  610 (882)
Q Consensus       547 ~~~~-l~s~~--~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~  610 (882)
                      ..++ |++++  .|..|+|||+... -+..+|..|...++.++|.. |...|.+++.||.|..-.++++
T Consensus       274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            8764 55554  4788999999754 45678899999999999964 5567899999998766555543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.7e-22  Score=184.40  Aligned_cols=292  Identities=18%  Similarity=0.316  Sum_probs=212.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 002782           63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG  142 (882)
Q Consensus        63 I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~  142 (882)
                      -.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|..||++++||+||+.|+|++.|..|.+||+..|.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCcee
Q 002782          143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC  222 (882)
Q Consensus       143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~  222 (882)
                      ..++|+.+.|+|-.....+++--. .                     ...-+.|++.-..++.-..||.+.         
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~-~---------------------sp~vi~~s~~~h~~Lp~d~d~dln---------  153 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIME-E---------------------SPVVIDFSDPKHSVLPKDDDGDLN---------  153 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEec-C---------------------CcEEEEecCCceeeccCCCccccc---------
Confidence            678999999999755432322111 0                     011122222111111111111000         


Q ss_pred             eeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCC
Q 002782          223 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD  302 (882)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~  302 (882)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (405)
T KOG1273|consen  154 --------------------------------------------------------------------------------  153 (405)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782          303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  382 (882)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  382 (882)
                                                                                         .+           
T Consensus       154 -------------------------------------------------------------------~s-----------  155 (405)
T KOG1273|consen  154 -------------------------------------------------------------------SS-----------  155 (405)
T ss_pred             -------------------------------------------------------------------cc-----------
Confidence                                                                               00           


Q ss_pred             CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc-ccEEEEEEccCCCcEEEEee
Q 002782          383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGS  461 (882)
Q Consensus       383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~l~s~~  461 (882)
                                ..|.      .  +.+.|++ +++|...|.+.++|..+-+++..++-.. ..|..+.++..|. +++.-+
T Consensus       156 ----------as~~------~--fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNt  215 (405)
T KOG1273|consen  156 ----------ASHG------V--FDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINT  215 (405)
T ss_pred             ----------cccc------c--ccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEec
Confidence                      0000      0  4466666 7888888888888888877777766555 7788899998877 889999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcC-CCcEEEEeCCCceeEEEEeccc-C
Q 002782          462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-R  537 (882)
Q Consensus       462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~-dg~i~iwd~~~~~~~~~~~~h~-~  537 (882)
                      .|..|+.|++......... ....+...+  ......-.+++||.+|.+++.++. ...++||.-..|.+++.+.|.+ .
T Consensus       216 sDRvIR~ye~~di~~~~r~-~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE  294 (405)
T KOG1273|consen  216 SDRVIRTYEISDIDDEGRD-GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE  294 (405)
T ss_pred             CCceEEEEehhhhcccCcc-CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence            9999999998743211000 000111111  112234568999999999988774 3569999999999999999987 5


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          538 GIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ....+.|.|-...+++- ..|.|++|...
T Consensus       295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  295 ELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             heeecccccceeeeeec-cCCceEEEEee
Confidence            67889999988888887 66999999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=214.30  Aligned_cols=243  Identities=20%  Similarity=0.306  Sum_probs=207.5

Q ss_pred             eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782          393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      ..|....+.+.  +.++|.. +++++.||.|++|+.... ..-..+..+...|.+++....   .|++|+.+++|.+|.+
T Consensus        10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence            35677766666  8899996 999999999999987765 333333347788888887654   6999999999999999


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEE
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  551 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  551 (882)
                      ..+..          ...+....-++++++|+.+|+++|.|+.|-.|++-++.+......+++|..+|.++.|+|.+.+|
T Consensus        84 ps~~~----------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   84 PSGEE----------DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             CCCCc----------cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence            87642          22233345688999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCceeeEeecC--------cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec--cCCC
Q 002782          552 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--KHED  621 (882)
Q Consensus       552 ~s~~~d~~i~iwd~~~~~~~~~~~~h--------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~  621 (882)
                      |+.+.||.|++||+.++.+..++.+-        ...+..++|+|+|..|+..+.|+.|++|+..+++....+.  .+..
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS  233 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence            99999999999999999888776542        3457789999999999999999999999999999887775  3455


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          622 KIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      .+..+.|+|.|.|||+++.||.|.||+..+
T Consensus       234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            699999999999999999999999999997

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.7e-23  Score=216.74  Aligned_cols=232  Identities=21%  Similarity=0.320  Sum_probs=192.4

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCC---ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM  482 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  482 (882)
                      +..-...+|++++..|.|.+||+..   .+.+..+..|...++++.|++..+++|++|++||+|++||++...       
T Consensus        95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-------  167 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-------  167 (839)
T ss_pred             cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-------
Confidence            4433444699999999999999987   556667889999999999999999999999999999999998653       


Q ss_pred             cccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcE
Q 002782          483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI  560 (882)
Q Consensus       483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  560 (882)
                         ...+.......|..+.|+| .+..++++...|.+.+||++.. .+...+..|.++|.|+.|+|++.+|||||.|+.|
T Consensus       168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence               4445555778899999999 5789999999999999999865 4566788899999999999999999999999999


Q ss_pred             EEEecCCCce--eeEeecCcCCEEEEEEEeCCCE-EEEeec--CCeEEEEEcCCC-eeEEEeccCCCceEEEEEcC-CCC
Q 002782          561 KIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQ-IVSCGA--DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE  633 (882)
Q Consensus       561 ~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~-l~s~~~--dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~  633 (882)
                      +|||+.+++.  +.++. ...+|.++.|-|...+ |++++.  |-.|+|||++.. -+..++..|.+.++.++|.. |..
T Consensus       245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~  323 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI  323 (839)
T ss_pred             EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence            9999987644  33333 3468999999998665 566654  779999999754 56788889999999999965 556


Q ss_pred             EEEEEeCCCCEEEEE
Q 002782          634 MFATGGSDALVNLWH  648 (882)
Q Consensus       634 ~l~s~~~dg~i~iw~  648 (882)
                      .+.+++.||++..-.
T Consensus       324 ~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  324 NLWSCSKDGTVLQHL  338 (839)
T ss_pred             eeEeecCccHHHHhh
Confidence            788999999875433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.7e-20  Score=197.38  Aligned_cols=473  Identities=15%  Similarity=0.184  Sum_probs=309.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCc-cEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782          106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATL  184 (882)
Q Consensus       106 ~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~-~~l~sgs~dg~I~vwd~~~~~~~~~l  184 (882)
                      ..-.||+|+++++... +..|.||...+|.+++.+.+|..+++.+.+.|.... .++++++.||.|++||...+..+.++
T Consensus        20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~   98 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF   98 (792)
T ss_pred             cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence            3456999999888765 578999999999999999999999999999887554 67889999999999999999999988


Q ss_pred             cCcccceEEEEEccC---CCEEE-EEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782          185 DKHFSRVTSMAITSD---GSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  260 (882)
Q Consensus       185 ~~h~~~v~~l~~s~~---~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (882)
                      ..+. ++..+.+.|.   -...+ .+..|..  +..        +....                               
T Consensus        99 ~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~--~~~--------~~s~~-------------------------------  136 (792)
T KOG1963|consen   99 DNNL-PVHALVYKPAQADISANVYVSVEDYS--ILT--------TFSKK-------------------------------  136 (792)
T ss_pred             ecCC-ceeEEEechhHhCccceeEeecccce--eee--------ecccc-------------------------------
Confidence            6553 3444444321   11111 1111111  000        00000                               


Q ss_pred             cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782          261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  340 (882)
Q Consensus       261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  340 (882)
                                 ..+..+-+.+.+-.       .....+...  ......+.. .....+..+..+..+.+|.......  
T Consensus       137 -----------~~~q~~~~~~~t~~-------~~~~d~~~~--~~~~~~I~~-~~~ge~~~i~~~~~~~~~~v~~~~~--  193 (792)
T KOG1963|consen  137 -----------LSKQSSRFVLATFD-------SAKGDFLKE--HQEPKSIVD-NNSGEFKGIVHMCKIHIYFVPKHTK--  193 (792)
T ss_pred             -----------cccceeeeEeeecc-------ccchhhhhh--hcCCccEEE-cCCceEEEEEEeeeEEEEEecccce--
Confidence                       00000000000000       000000000  000111222 2333445555666677777665331  


Q ss_pred             ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                       .......-..|.-.+.+.+++| .+++++++..+|+|.+|.--.    ......+.=|...|.++.  |+++|.+ +.+
T Consensus       194 -~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~-LlS  268 (792)
T KOG1963|consen  194 -HTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAY-LLS  268 (792)
T ss_pred             -eeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE--EecCCce-Eee
Confidence             1111122233444467777776 889999999999999997433    223446677999999999  9999998 999


Q ss_pred             eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC-CcccccchhhhhhcCC
Q 002782          417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGK  495 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~  495 (882)
                      |+..|.+.+|.+.+++ ...+..-.++|..+.++|++. +.+....|+.|.+....+...... ...............+
T Consensus       269 GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  269 GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            9999999999999988 556677789999999999987 567777899999988754421110 0000000000112234


Q ss_pred             CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-----------ccCceEEEEEcCCCCEEEEeeC--------
Q 002782          496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----------HKRGIWSVEFSPVDQVVITASG--------  556 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~~l~s~~~--------  556 (882)
                      -.+.++++|.-+.++..+..|.|.+||+-+...+..+..           +..++++++.+-.|.+++|.-.        
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~  426 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF  426 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence            457788999777888888999999999988766655541           2345788888888999998632        


Q ss_pred             C--CcEEEEecCCCce----ee-EeecCcCCEEEEEEEeC--CCEEEEeecCCeEEEEEcCC----------CeeEEEec
Q 002782          557 D--KTIKIWSISDGSC----LK-TFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT----------GECIATYD  617 (882)
Q Consensus       557 d--~~i~iwd~~~~~~----~~-~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~i~iwd~~~----------~~~~~~~~  617 (882)
                      |  -.+++|-......    .. ....|...+...+|.+.  ...+++++.||.++||-+..          ..|...-.
T Consensus       427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s  506 (792)
T KOG1963|consen  427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS  506 (792)
T ss_pred             CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence            3  3478897654432    22 22358877777777543  23799999999999998832          23444444


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       618 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      .|..++.+++|+.||. +++.+.|++|.+||..+.
T Consensus       507 y~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  507 YHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             cccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence            5889999999999996 555667889999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=3.1e-22  Score=204.35  Aligned_cols=435  Identities=17%  Similarity=0.207  Sum_probs=265.2

Q ss_pred             EEEcC---CCCEEEEEeCCCcEEEEECCCCee------EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782           66 LALSP---DDKLLFSSGHSREIRVWDLSTLKC------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC  136 (882)
Q Consensus        66 l~~sp---d~~~las~~~dg~i~iwd~~~~~~------~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~  136 (882)
                      ..|++   ....||.+..+|.|.++|......      +..+..|...|..+.|-|....|++++.|.++++||+.++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            45554   235789999999999999865432      356778999999999999777899999999999999999988


Q ss_pred             EEE--eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe---------------------------EEEEecCc
Q 002782          137 THY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------------------------CVATLDKH  187 (882)
Q Consensus       137 ~~~--~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~---------------------------~~~~l~~h  187 (882)
                      ...  +.||.+.|.++||.|.. ..++++|+.||.|.|||+.-..                           .+..-..|
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             ecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            876  88999999999999984 5789999999999999985322                           01111223


Q ss_pred             ccceEE---EEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccccc
Q 002782          188 FSRVTS---MAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  263 (882)
Q Consensus       188 ~~~v~~---l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (882)
                      .+.|.+   +.+..|...|+++|. |+.|+|||++...........                                  
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~----------------------------------  259 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR----------------------------------  259 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC----------------------------------
Confidence            344444   555567778888877 888888888765432211100                                  


Q ss_pred             ceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccccee
Q 002782          264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL  343 (882)
Q Consensus       264 ~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~  343 (882)
                                                   ....-........+++.+.....+.+|++.+.|+.|++|++....      
T Consensus       260 -----------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s------  304 (720)
T KOG0321|consen  260 -----------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS------  304 (720)
T ss_pred             -----------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC------
Confidence                                         000000000112344555555555666555556666666554321      


Q ss_pred             eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782          344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  423 (882)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  423 (882)
                                                                ......+.++...-.-+..+.+|++.. +++|+.|...
T Consensus       305 ------------------------------------------~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~a  341 (720)
T KOG0321|consen  305 ------------------------------------------ISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQA  341 (720)
T ss_pred             ------------------------------------------cCchhhccCcccceeeeeeecCCCCce-EeccCCCcce
Confidence                                                      111222333333333333347788887 9999999999


Q ss_pred             EEEeCCCce-EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc----cccchhhhhhcCCCee
Q 002782          424 RLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM----NLKAKAVVAAHGKDIN  498 (882)
Q Consensus       424 ~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~i~  498 (882)
                      ++|.+.+.. ....+.+|.-.|++++|.|..-.-+++++.|.++++|++..+-.......    .......+.+|...+.
T Consensus       342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~  421 (720)
T KOG0321|consen  342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVL  421 (720)
T ss_pred             eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccc
Confidence            999998754 34557799999999999886655689999999999999965532221110    0111222245555554


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC----CCcEEEEecCCCceeeE-
Q 002782          499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG----DKTIKIWSISDGSCLKT-  573 (882)
Q Consensus       499 ~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~-  573 (882)
                      .+.++-.+.+..-.  .+..++|..               ...++-.|++.-...+..    .-.|........+.... 
T Consensus       422 nv~ss~~~t~~~pR--~~~~r~~ss---------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~  484 (720)
T KOG0321|consen  422 NVNSSLRKTYKDPR--EGMNRISSS---------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSR  484 (720)
T ss_pred             cccccccccccchh--hhccccccC---------------ccchhcCcCCcccccCCCcccccccceecchhccCccccc
Confidence            44444333222211  222333321               122333444333332211    11244444333222211 


Q ss_pred             -eecCcCCEEEEEEEeCCCEEEEeec-----------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782          574 -FEGHTSSVLRASFLTRGAQIVSCGA-----------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       574 -~~~h~~~v~~~~~s~~g~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                       -.+|...|....+++.+..+++.+.           ++.++.|............... ....+.|+|-
T Consensus       485 ~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar-~~~r~ifs~~  553 (720)
T KOG0321|consen  485 GSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREAR-KKSRLIFSPG  553 (720)
T ss_pred             cccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccc-cccceeccCc
Confidence             1236667777777777778888887           8889998876554444333222 4555666653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.8e-19  Score=200.97  Aligned_cols=374  Identities=34%  Similarity=0.595  Sum_probs=293.1

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeecCCC-cEEEEEE-ecCCCccEEEE-EeCCCcEE
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVR  171 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~-~~~~~~~h~~-~V~~l~f-~~~~~~~~l~s-gs~dg~I~  171 (882)
                      ..+..|...+..+.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++.. +++. +..|+.+.
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~  137 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVK  137 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEE
Confidence            3456789999999999999999999999999999999887 6777776443 7888887 666552 3444 44499999


Q ss_pred             EEECCC-CeEEEEecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccc
Q 002782          172 VWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS  249 (882)
Q Consensus       172 vwd~~~-~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (882)
                      +||... ......+..|...|..+.|+|++..+++++. |+.+++|+.....                            
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  189 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK----------------------------  189 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc----------------------------
Confidence            999998 8888899999999999999999998888875 8888888865311                            


Q ss_pred             cchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEE
Q 002782          250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL  329 (882)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  329 (882)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (466)
T COG2319         190 --------------------------------------------------------------------------------  189 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC
Q 002782          330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS  409 (882)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  409 (882)
                                                                                ....+.+|...+.+++  +.|+
T Consensus       190 ----------------------------------------------------------~~~~~~~~~~~v~~~~--~~~~  209 (466)
T COG2319         190 ----------------------------------------------------------PLSTLAGHTDPVSSLA--FSPD  209 (466)
T ss_pred             ----------------------------------------------------------eEEeeccCCCceEEEE--EcCC
Confidence                                                                      1112333666677776  5577


Q ss_pred             CCEEEEEeecCCeEEEEeCCCceEEe-eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782          410 GKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  488 (882)
Q Consensus       410 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  488 (882)
                      +..++++++.|+.+++||...+.... .+..|.... ...|++++ .++++++.|+.+++|+......         ...
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---------~~~  278 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---------LLR  278 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---------EEE
Confidence            76436666889999999988777777 678888775 44899998 4788999999999999886532         111


Q ss_pred             hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEe-eCCCcEEEEec
Q 002782          489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSI  565 (882)
Q Consensus       489 ~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~  565 (882)
                      ....|...+.++.|+|++..+++++.|+.+.+|+...........  .|...+..+.|.+++..++.+ ..|+.+.+|++
T Consensus       279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            115678899999999988888889999899999998887777666  788889999994332555555 68899999999


Q ss_pred             CCCceeeEeecCcCCEEEEEEEeCCCEEEE-eecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCE
Q 002782          566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV  644 (882)
Q Consensus       566 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  644 (882)
                      ...........+. .+..+.+.+ ...... +..++.+.+|+............+...+....+++++..+++++.++.+
T Consensus       359 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (466)
T COG2319         359 RTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI  436 (466)
T ss_pred             CCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcE
Confidence            8877333333222 278888888 544444 6889999999999998888777554789999999999999999999999


Q ss_pred             EEEECCC
Q 002782          645 NLWHDST  651 (882)
Q Consensus       645 ~iw~~~~  651 (882)
                      .+|+..+
T Consensus       437 ~~~~~~~  443 (466)
T COG2319         437 RLWDLKT  443 (466)
T ss_pred             EEEeccC
Confidence            9999887

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=183.31  Aligned_cols=287  Identities=17%  Similarity=0.222  Sum_probs=225.1

Q ss_pred             eEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe
Q 002782          356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  435 (882)
Q Consensus       356 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  435 (882)
                      ..++.|++ .+.++|+|..+|.+.+||+.+....+.+.+|..+|.++.  ++++|+. +++++.|..+.+||+..|.++.
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence            56777776 889999999999999999999999999999999999998  9999998 9999999999999999999887


Q ss_pred             eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782          436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  515 (882)
Q Consensus       436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d  515 (882)
                      .+. ..++|+.+.|+|...+..++.--+..-.+-++.......      .+...-........+..|.+.|+++.+|...
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCccccccccccccccCCCCEEEEecCc
Confidence            765 567999999999877766665555545555554321000      0000000011112334688999999999999


Q ss_pred             CcEEEEeCCCceeEEEEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-------c--eeeEeec--CcCCEEE
Q 002782          516 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------S--CLKTFEG--HTSSVLR  583 (882)
Q Consensus       516 g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-------~--~~~~~~~--h~~~v~~  583 (882)
                      |.+.++|..+.+++..++-.. ..|..+.|+..|++|+.-+.|..||.|++..-       +  ..+.+..  ....-.+
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            999999999999999888765 78999999999999999999999999998631       1  1111111  1123456


Q ss_pred             EEEEeCCCEEEEeecC-CeEEEEEcCCCeeEEEeccCC-CceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          584 ASFLTRGAQIVSCGAD-GLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       584 ~~~s~~g~~l~s~~~d-g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      ++|+.+|.|++.++.. ..++||.-..|..+..+.+.. .....+.|.|-...+++- ..|.+.+|.....+.
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence            8999999999887753 589999999999999998877 567788999998888887 778999999776543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=5.2e-21  Score=195.62  Aligned_cols=279  Identities=20%  Similarity=0.294  Sum_probs=204.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 002782           62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK  141 (882)
Q Consensus        62 ~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~  141 (882)
                      .|..++|-|||..|+.+.. ..+.+||...|..+.++++|+..|.+++|+.||+++|+|+.|..|.+|+..-.-.+. + 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y-   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y-   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence            7899999999998877654 479999999999999999999999999999999999999999999999975433222 2 


Q ss_pred             cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782          142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       142 ~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~  221 (882)
                      .|...|.|+.|.|-...  |++++-.. .-+|.........  ......+.+.+|..||++++.|-.+|+|.+-+-....
T Consensus        91 SH~D~IQCMsFNP~~h~--LasCsLsd-FglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQ--LASCSLSD-FGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             ccCCeeeEeecCchHHH--hhhcchhh-ccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence            49999999999997665  88877643 6789865543221  1123578899999999999999999998875422110


Q ss_pred             eeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccC
Q 002782          222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD  301 (882)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~  301 (882)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (1081)
T KOG1538|consen  166 --------------------------------------------------------------------------------  165 (1081)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEE
Q 002782          302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY  381 (882)
Q Consensus       302 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  381 (882)
                                                               .....+..|.+++|.+++|+|..+               
T Consensus       166 -----------------------------------------k~~I~Rpgg~Nspiwsi~~~p~sg---------------  189 (1081)
T KOG1538|consen  166 -----------------------------------------KVKIERPGGSNSPIWSICWNPSSG---------------  189 (1081)
T ss_pred             -----------------------------------------ceEEeCCCCCCCCceEEEecCCCC---------------
Confidence                                                     011122334566777777766332               


Q ss_pred             eCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee
Q 002782          382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  461 (882)
Q Consensus       382 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~  461 (882)
                                                +.....+++.....++.++.+. |+.+..-..-.-...|+.+.++|. +++.|+
T Consensus       190 --------------------------~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGG  241 (1081)
T KOG1538|consen  190 --------------------------EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGG  241 (1081)
T ss_pred             --------------------------CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEcc
Confidence                                      0011125555556666666554 333332233334456888899987 889999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      .|+.+.+|.-...           ...+.......|..++..|+++.++.|+.||+|.-|++
T Consensus       242 sdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  242 SDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCCceEEEeecCe-----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            9999999975532           33344446678999999999999999999999999876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.7e-24  Score=220.55  Aligned_cols=222  Identities=29%  Similarity=0.516  Sum_probs=198.9

Q ss_pred             EEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhc
Q 002782          414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH  493 (882)
Q Consensus       414 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  493 (882)
                      ++.+..+-.+++||...      +..|...+.++..-..+ ..+++|+.|..+-+|.+....          ....+.+|
T Consensus         7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~----------~i~S~~~h   69 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN----------AITSLTGH   69 (825)
T ss_pred             cceeeeeeccccccchh------hhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCc----------hhheeecc
Confidence            44444455677888654      45677888888774444 489999999999999986542          33347889


Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  573 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  573 (882)
                      ..+|.++.|+++..+|++|+.+|+|++||++..+.+.++.+|...+.+++|+|-+.+.+.|+.|+.+++||++...|...
T Consensus        70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~  149 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT  149 (825)
T ss_pred             CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       574 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      +.+|...+..+.|+|+|+++++++.|..++|||+..|+.+..|..|++.+.++.|+|..-++++||.|+++++|++.+-
T Consensus       150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998853

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.8e-21  Score=178.84  Aligned_cols=272  Identities=16%  Similarity=0.299  Sum_probs=193.9

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      .+|..-|.++.|++.|+++|+|+.|++|+|||...    -.+....+.|.+.|..+.|.+..-+..+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            46888999999999999999999999999999643    35777889999999999997766778899999999999996


Q ss_pred             CCC---------CeEEEEecCcccceEEEEEccC--CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCC
Q 002782          175 LLA---------KKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA  243 (882)
Q Consensus       175 ~~~---------~~~~~~l~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (882)
                      -..         .....++....+.|+.+.|.|.  |-.|++++.||.+|+|+..+.-.+                    
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL--------------------  149 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL--------------------  149 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--------------------
Confidence            521         1245577788899999999984  668899999999999987543221                    


Q ss_pred             cccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEE
Q 002782          244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT  323 (882)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  323 (882)
                                                       +-|.+...                      +..+ .           
T Consensus       150 ---------------------------------s~W~Lq~E----------------------i~~~-~-----------  162 (361)
T KOG2445|consen  150 ---------------------------------SQWTLQHE----------------------IQNV-I-----------  162 (361)
T ss_pred             ---------------------------------ccchhhhh----------------------hhhc-c-----------
Confidence                                             11221110                      0000 0           


Q ss_pred             eCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEee
Q 002782          324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD  403 (882)
Q Consensus       324 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~  403 (882)
                                                                                        .....+..+..|+.
T Consensus       163 ------------------------------------------------------------------~pp~~~~~~~~Cvs  176 (361)
T KOG2445|consen  163 ------------------------------------------------------------------DPPGKNKQPCFCVS  176 (361)
T ss_pred             ------------------------------------------------------------------CCcccccCcceEEe
Confidence                                                                              00001222233333


Q ss_pred             eeeecCCCEEEEEeecC-----CeEEEEeCCCc----eEEeeeecccccEEEEEEccCCC---cEEEEeeCCCeEEEEec
Q 002782          404 TCALSSGKILIVTGSKD-----NSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       404 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~---~~l~s~~~dg~i~~wd~  471 (882)
                      ++.+.-...+|+.|+.+     +.+.||....+    ..+..+.+|..+|+.++|.|+-.   .++++++.|| |+||++
T Consensus       177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v  255 (361)
T KOG2445|consen  177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV  255 (361)
T ss_pred             eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence            32222222335555544     35677765432    23455779999999999999643   3799999999 999999


Q ss_pred             CCCC----------CCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782          472 DGLS----------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       472 ~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~  524 (882)
                      ....          ..............+..|.+.|..+.|+--|..|++.+.||.|++|...
T Consensus       256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            8521          1112223444556678899999999999999999999999999999754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=190.21  Aligned_cols=291  Identities=15%  Similarity=0.274  Sum_probs=221.5

Q ss_pred             CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC--CeEEEEecCcccceEEEEEccCCC-EEEEEeCCCeEEEEecCC
Q 002782          143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--KKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~--~~~~~~l~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vwd~~~  219 (882)
                      ..+.|+++.|+|..  .+|++++.||.+++|.+..  ...++.+.-...+|.+.+|.|+|. .++++++...++.||+.+
T Consensus       212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            35789999999964  5699999999999998754  446677766778999999999999 899999999999999977


Q ss_pred             ceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeec
Q 002782          220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE  299 (882)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~  299 (882)
                      .+..+.-+...                                                                     
T Consensus       290 ak~~k~~~~~g---------------------------------------------------------------------  300 (514)
T KOG2055|consen  290 AKVTKLKPPYG---------------------------------------------------------------------  300 (514)
T ss_pred             cccccccCCCC---------------------------------------------------------------------
Confidence            65432211110                                                                     


Q ss_pred             cCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCc-eEEEEEeCCCCcEEEEEEcCCcE
Q 002782          300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE-ILDLKFLGEEEQYLAVATNIEQV  378 (882)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~~~~i  378 (882)
                                                                          +... +.... .++++++++..++.|.|
T Consensus       301 ----------------------------------------------------~e~~~~e~Fe-VShd~~fia~~G~~G~I  327 (514)
T KOG2055|consen  301 ----------------------------------------------------VEEKSMERFE-VSHDSNFIAIAGNNGHI  327 (514)
T ss_pred             ----------------------------------------------------cccchhheeE-ecCCCCeEEEcccCceE
Confidence                                                                0000 00011 12366688889999999


Q ss_pred             EEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccc-cEEEEEEccCCCcEE
Q 002782          379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFL  457 (882)
Q Consensus       379 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~s~~~~~~l  457 (882)
                      .+....+++.+..+.- .+.+..+.  |+.+++. +++.+.+|.|.+||+....++..+....+ .-+++|.++++. ++
T Consensus       328 ~lLhakT~eli~s~Ki-eG~v~~~~--fsSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-yl  402 (514)
T KOG2055|consen  328 HLLHAKTKELITSFKI-EGVVSDFT--FSSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YL  402 (514)
T ss_pred             Eeehhhhhhhhheeee-ccEEeeEE--EecCCcE-EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eE
Confidence            9999998887766653 45666666  8899987 67777789999999999988887764322 345677888877 89


Q ss_pred             EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC--CCcEEEEeCCCceeEEEEecc
Q 002782          458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGH  535 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~--dg~i~iwd~~~~~~~~~~~~h  535 (882)
                      ++|+..|.|.|||.++.....    ..++...+..-...|+++.|+|++++||.+|.  +..+++-.+++......+...
T Consensus       403 A~GS~~GiVNIYd~~s~~~s~----~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~  478 (514)
T KOG2055|consen  403 ATGSDSGIVNIYDGNSCFAST----NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS  478 (514)
T ss_pred             EeccCcceEEEeccchhhccC----CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC
Confidence            999999999999976542211    22344555556678999999999999998875  457999998888777666654


Q ss_pred             c---CceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          536 K---RGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       536 ~---~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      .   +.|+|++|||.+.++|.|..+|.+.+|.+.
T Consensus       479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            3   458999999999999999999999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=9.8e-19  Score=194.98  Aligned_cols=373  Identities=34%  Similarity=0.614  Sum_probs=285.3

Q ss_pred             eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCC-CEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 002782           55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDG-PAIGMAC-HPSGG-LLATAGA-DRKVLVW  129 (882)
Q Consensus        55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h~~-~V~~l~f-s~~~~-~lasg~~-dg~v~vw  129 (882)
                      .+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            466789999999999999999999999999999998887 7777777443 7888888 88888 5555444 8999999


Q ss_pred             ECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeC-CCcEEEEECCCCeEEEEecCcccceEEEEEccCCC-EEEEE
Q 002782          130 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISA  206 (882)
Q Consensus       130 d~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~-dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~-~l~s~  206 (882)
                      |... ......+..|...|..++|+|++.  .+++++. |+.+++|+...+..+..+.+|...|.++.|+|++. .++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            9998 888888999999999999999876  4777775 99999999999999999999999999999999998 55555


Q ss_pred             eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782          207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  286 (882)
Q Consensus       207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~  286 (882)
                      +.|+.+++||.........                                                             
T Consensus       218 ~~d~~i~~wd~~~~~~~~~-------------------------------------------------------------  236 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRS-------------------------------------------------------------  236 (466)
T ss_pred             cCCCcEEEEECCCCcEEee-------------------------------------------------------------
Confidence            8899999986542211100                                                             


Q ss_pred             eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782          287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  366 (882)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (882)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (466)
T COG2319         237 --------------------------------------------------------------------------------  236 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-EeeeecccccEE
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG  445 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~  445 (882)
                                              .+.+|.... ...  +.+++.. +++++.|+.+++|+...... +.....|...+.
T Consensus       237 ------------------------~~~~~~~~~-~~~--~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  288 (466)
T COG2319         237 ------------------------TLSGHSDSV-VSS--FSPDGSL-LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL  288 (466)
T ss_pred             ------------------------ecCCCCcce-eEe--ECCCCCE-EEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence                                    111122211 001  5566644 67888899999999876554 444467889999


Q ss_pred             EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCC
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP  524 (882)
Q Consensus       446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~  524 (882)
                      ++.|.|++. .+++++.|+.+.+|+........       ... ...|...+..+.+.+++..++.+ ..|+.+.+|+..
T Consensus       289 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         289 SVAFSPDGK-LLASGSSDGTVRLWDLETGKLLS-------SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             EEEECCCCC-EEEEeeCCCcEEEEEcCCCceEE-------Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence            999999766 55668888999999876542111       111 34566678999994343455555 688999999998


Q ss_pred             CceeEEEEecccCceEEEEEcCCCCEEEE-eeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEE
Q 002782          525 DLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  603 (882)
Q Consensus       525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~  603 (882)
                      .......... ...+..+.+++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.++
T Consensus       360 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (466)
T COG2319         360 TGKPLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR  437 (466)
T ss_pred             CCceeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence            8773333332 22288999999 544444 68899999999998888777765547888899999999999999999999


Q ss_pred             EEEcCC
Q 002782          604 LWTVRT  609 (882)
Q Consensus       604 iwd~~~  609 (882)
                      +|+..+
T Consensus       438 ~~~~~~  443 (466)
T COG2319         438 LWDLKT  443 (466)
T ss_pred             EEeccC
Confidence            999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=190.88  Aligned_cols=284  Identities=12%  Similarity=0.130  Sum_probs=231.1

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc--eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  429 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  429 (882)
                      ..+.|.++.|.| ....+++++-|+.+++|.+...  ..+..+.-...+|.+..  +.|+|...+++++....++.||+.
T Consensus       212 s~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeecc
Confidence            457899999998 7889999999999999987643  34555555667888877  889999669999999999999999


Q ss_pred             CceEEee--eecc-cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782          430 SRCCVGV--GTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  506 (882)
Q Consensus       430 ~~~~~~~--~~~~-~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  506 (882)
                      +.+....  ..++ ...+....++++++ +++..+..|.|.+....+.           .........+.|..++|+.++
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~-----------eli~s~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTK-----------ELITSFKIEGVVSDFTFSSDS  356 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhh-----------hhhheeeeccEEeeEEEecCC
Confidence            8875543  2233 34577788899987 8999999999999887654           222223355788999999999


Q ss_pred             cEEEEEcCCCcEEEEeCCCceeEEEEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCC------CceeeEeecCcC
Q 002782          507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHTS  579 (882)
Q Consensus       507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~h~~  579 (882)
                      +.|++.+.+|.|.+||++...++..+.... -.-+++|.|+++.+||+|+..|.|.|||..+      .++++++..-..
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence            999999999999999999998888877422 2346788899999999999999999999653      366777777778


Q ss_pred             CEEEEEEEeCCCEEEEeec--CCeEEEEEcCCCeeEEEeccC---CCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          580 SVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       580 ~v~~~~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      .|+.++|++|++.|+.+|.  +..+++-.+.+......+...   -+.|+|++|||.+.+|+.|..+|.+.+|++.
T Consensus       437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999999999988776  568999998888777766543   3678999999999999999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2e-21  Score=191.07  Aligned_cols=291  Identities=21%  Similarity=0.266  Sum_probs=226.4

Q ss_pred             eeecccCCceEEEEEeCCCC-cEEEEEEcCCcEEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782          347 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  421 (882)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  421 (882)
                      ....-+.+.|.++.|.|... .++++|...|+|-+||+.+    ...+..+..|..+|.++.  |+|.+...+++.+.||
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG  257 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence            34445678999999999877 8999999999999999953    233567789999999999  8888877799999999


Q ss_pred             eEEEEeCCCceEEeeeec--ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782          422 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  499 (882)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (882)
                      +|++-|++++..-..+..  ....+..+.|+.+.+. ++.+..=|...+||++....         ......-|...|++
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS  327 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence            999999998754433333  5556777888887764 55666666999999987642         23444568889999


Q ss_pred             EEEcCC-CcEEEEEcCCCcEEEEeCCCce----eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC----CCce
Q 002782          500 LAVAPN-DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC  570 (882)
Q Consensus       500 ~~~s~~-~~~la~~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~----~~~~  570 (882)
                      ++++|. ..++|+++.|++++|||++...    ++.....|...|.+..|||++..|+|.+.|..|+|||..    ....
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence            999995 4689999999999999997642    234445699999999999999889999999999999983    2333


Q ss_pred             eeEeecCcC------CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC-ceEEE-EEcCCCCEEEE-EeCC
Q 002782          571 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWAL-AVGKKTEMFAT-GGSD  641 (882)
Q Consensus       571 ~~~~~~h~~------~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l-~~s~~~~~l~s-~~~d  641 (882)
                      ..++. |..      ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++ ++..
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            44443 332      345578999999999999988999999999998888765543 66665 78998884554 5567


Q ss_pred             CCEEEEECC
Q 002782          642 ALVNLWHDS  650 (882)
Q Consensus       642 g~i~iw~~~  650 (882)
                      |.|.||-..
T Consensus       487 Gki~vft~k  495 (498)
T KOG4328|consen  487 GKIYVFTNK  495 (498)
T ss_pred             ceEEEEecC
Confidence            888888643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.8e-21  Score=197.17  Aligned_cols=216  Identities=17%  Similarity=0.220  Sum_probs=173.5

Q ss_pred             CCeEEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeC---CCeEEEEecCCCCCCCCCcccccchhhhhh
Q 002782          420 DNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  492 (882)
Q Consensus       420 dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  492 (882)
                      ++.+..|.-...    .-+...-.|...|..+.|+..|. +|++...   ...|.+.++....          ....+..
T Consensus       496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~PF~k  564 (733)
T KOG0650|consen  496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQSPFRK  564 (733)
T ss_pred             cccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccCchhh
Confidence            345566654321    11334456889999999999998 6666644   3568888886542          2233444


Q ss_pred             cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-cee
Q 002782          493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL  571 (882)
Q Consensus       493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~  571 (882)
                      ..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|.+++.+|.|.-|+.|+.|+.+..||++-+ ++.
T Consensus       565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy  643 (733)
T KOG0650|consen  565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY  643 (733)
T ss_pred             cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence            5678899999999999998875 67999999988888888778888999999999999999999999999999755 577


Q ss_pred             eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC-------CC--eeEEEeccCCCc----eEEEEEcCCCCEEEEE
Q 002782          572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-------TG--ECIATYDKHEDK----IWALAVGKKTEMFATG  638 (882)
Q Consensus       572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-------~~--~~~~~~~~h~~~----v~~l~~s~~~~~l~s~  638 (882)
                      +++..|...++.++|++.-.++++|+.||.+.|+.-.       +.  -++..+.+|...    |....|+|...+|+++
T Consensus       644 k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA  723 (733)
T KOG0650|consen  644 KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA  723 (733)
T ss_pred             HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec
Confidence            8888999999999999999999999999999998532       11  245677788755    8899999999999999


Q ss_pred             eCCCCEEEE
Q 002782          639 GSDALVNLW  647 (882)
Q Consensus       639 ~~dg~i~iw  647 (882)
                      |.||+|++|
T Consensus       724 GAd~tirlf  732 (733)
T KOG0650|consen  724 GADGTIRLF  732 (733)
T ss_pred             CCCceEEee
Confidence            999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=3.4e-21  Score=189.36  Aligned_cols=306  Identities=17%  Similarity=0.263  Sum_probs=223.4

Q ss_pred             EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----eEEEEecCcccceEEEEEccCC-CEE
Q 002782          129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSDG-STL  203 (882)
Q Consensus       129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~v~~l~~s~~~-~~l  203 (882)
                      .|+..-......+-+.++|++++|+|..+..++++|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.. ..+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            34444455556677899999999999988889999999999999999532    2456778899999999999854 578


Q ss_pred             EEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782          204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  283 (882)
Q Consensus       204 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~  283 (882)
                      ++.+.||+|+.-|++....-..+.                                                        
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s--------------------------------------------------------  274 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLS--------------------------------------------------------  274 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhh--------------------------------------------------------
Confidence            889999999988876432100000                                                        


Q ss_pred             ceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC
Q 002782          284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  363 (882)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (882)
                                                                                                     .
T Consensus       275 -------------------------------------------------------------------------------~  275 (498)
T KOG4328|consen  275 -------------------------------------------------------------------------------L  275 (498)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-Eeeeecccc
Q 002782          364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG  442 (882)
Q Consensus       364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  442 (882)
                      ++.                             ......++  ++.+... ++.+..=|.+.+||..++.. ...+..|..
T Consensus       276 ~~d-----------------------------~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  276 DTD-----------------------------NIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             Ccc-----------------------------ceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence            000                             00011111  4444444 55555556888899887544 666778888


Q ss_pred             cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782          443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  522 (882)
Q Consensus       443 ~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd  522 (882)
                      .|++++++|..+.++++++.|++.++||++.......      +......|...|++..|||.+-.|++.+.|..|+|||
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            9999999999999999999999999999987643222      1344567999999999999888899999999999999


Q ss_pred             CC----CceeEEEEecccC------ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC-CEEE-EEEEeCC
Q 002782          523 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG  590 (882)
Q Consensus       523 ~~----~~~~~~~~~~h~~------~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~-~~~s~~g  590 (882)
                      ..    ...+..++. |+.      ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence            83    344444444 322      234568999999999999988999999988887877654433 4544 4789988


Q ss_pred             CEEEEee-cCCeEEEEEcC
Q 002782          591 AQIVSCG-ADGLVKLWTVR  608 (882)
Q Consensus       591 ~~l~s~~-~dg~i~iwd~~  608 (882)
                      ..+++|+ ..|.|+||.-+
T Consensus       477 ~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  477 DTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cceeccCCccceEEEEecC
Confidence            7555555 46789988644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.7e-20  Score=176.69  Aligned_cols=293  Identities=18%  Similarity=0.252  Sum_probs=221.3

Q ss_pred             eecccCCceEEEEEeC---C-CCcEEEEEEcCCcEEEEeCCCceeeeeee-----CCCcceEEeeeeeecC-CCEEEEEe
Q 002782          348 RLVGYNEEILDLKFLG---E-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVTG  417 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~---~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~l~~~  417 (882)
                      ...+|+.+|.++.|.+   . ..+.+++++ ...+.+|.....-.++.++     .|......++++.... ++.++++|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3456778888888863   2 334444444 4788888866443333332     3555666666655444 56779999


Q ss_pred             ecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCe
Q 002782          418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  497 (882)
Q Consensus       418 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i  497 (882)
                      +.-|.|++.|+.++++...+.+|...|..+.+.|...++++++|.|.+|++|++.+..       -.-...-..+|...|
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-------Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-------CVAVFGGVEGHRDEV  184 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-------EEEEecccccccCcE
Confidence            9999999999999999999999999999999999999999999999999999998652       111233356899999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEEEeCCCcee-------------------------EE---EEecccCceEEEEEcCCCC
Q 002782          498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-------------------------VV---TFRGHKRGIWSVEFSPVDQ  549 (882)
Q Consensus       498 ~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~-------------------------~~---~~~~h~~~v~~l~~s~~~~  549 (882)
                      .++.|+++|.++++++.|.++++|++...+.                         ..   +-.-|...|-|+.|-  |.
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd  262 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD  262 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence            9999999999999999999999999972210                         00   122367777777776  68


Q ss_pred             EEEEeeCCCcEEEEecC-CC-------------ceeeEeecCcCCEEEEEEE--eCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          550 VVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       550 ~l~s~~~d~~i~iwd~~-~~-------------~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                      ++++-|.++.|..|..- -+             ..+..+.-....|+-+.|.  |-++.|+.|...|.|.+||+++.++.
T Consensus       263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence            99999999999999861 11             2234455556677777665  56789999999999999999987763


Q ss_pred             --EEec--cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          614 --ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       614 --~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                        .++.  .....|...+||.||..|+..++|++|--||..
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence              2222  123578889999999999999999999999864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=2.7e-20  Score=175.37  Aligned_cols=315  Identities=21%  Similarity=0.319  Sum_probs=224.1

Q ss_pred             eecCCCccEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---eEEEee--cCCCCEEEEEEcCC----CCEEEEE
Q 002782           55 TIEGGSDTITALALSP-----DDKLLFSSGHSREIRVWDLSTLK---CLRSWK--GHDGPAIGMACHPS----GGLLATA  120 (882)
Q Consensus        55 ~l~~~~~~I~~l~~sp-----d~~~las~~~dg~i~iwd~~~~~---~~~~~~--~h~~~V~~l~fs~~----~~~lasg  120 (882)
                      ..+.|..+|..++|.+     .-..+|+++. ..+.+|.....-   .+.+..  .|......++|+-+    ..+||.|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3456888999999985     2245555554 578888876433   233322  25666777777653    4589999


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe---cCcccceEEEEEc
Q 002782          121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAIT  197 (882)
Q Consensus       121 ~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~~v~~l~~s  197 (882)
                      |.-|.|+|.|+.++++...+.+|.+.|..+.|+|+ +.++++++|.|..|++|++++..|+..+   .+|.+.|.++.|+
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            99999999999999999999999999999999998 5578999999999999999999999887   6799999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEE
Q 002782          198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  277 (882)
Q Consensus       198 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  277 (882)
                      ++|.+++++|.|.++++|++...+....+...     ..+.+++..                                  
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~----------------------------------  231 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTT----------------------------------  231 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCcc----------------------------------
Confidence            99999999999999999999854432221110     111111110                                  


Q ss_pred             EEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceE
Q 002782          278 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL  357 (882)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  357 (882)
                                                 +.+      |.                       ....++......-|...|-
T Consensus       232 ---------------------------~pf------pt-----------------------~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  232 ---------------------------RPF------PT-----------------------PKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ---------------------------CcC------Cc-----------------------cccccccccccccccchHH
Confidence                                       000      00                       0001111112234667778


Q ss_pred             EEEEeCCCCcEEEEEEcCCcEEEEeCCC-cee-------------eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782          358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MSC-------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  423 (882)
Q Consensus       358 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  423 (882)
                      ++.|..   +++++-+.++.|..|.... .+.             ...+.-....+.-+.+.+.+-++. ++.|...|.+
T Consensus       256 Cvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g~v  331 (385)
T KOG1034|consen  256 CVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSGKV  331 (385)
T ss_pred             HHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCCcE
Confidence            888864   5777777888999998721 111             122333445566666667777776 9999999999


Q ss_pred             EEEeCCCceEEe--ee--ecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782          424 RLWDSESRCCVG--VG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       424 ~iwd~~~~~~~~--~~--~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      .+||+.......  ++  ......|...+|+.++. +|+....|++|.-||.
T Consensus       332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence            999998765521  11  12345789999999987 8888999999999985

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.1e-18  Score=182.07  Aligned_cols=580  Identities=13%  Similarity=0.144  Sum_probs=355.7

Q ss_pred             CceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCC------------CCEEEEEeCCCcEEEEECC
Q 002782           23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD------------DKLLFSSGHSREIRVWDLS   90 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd------------~~~las~~~dg~i~iwd~~   90 (882)
                      +++.|+|.| ++|+|++..|.+.|..+.+.++.++.|...|+.+.|.|-            .-+||++...|.|.+||..
T Consensus        19 ~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             cccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            478888877 899999999999999999999999999999999999873            2357888889999999999


Q ss_pred             CCeeEEEeecCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeC
Q 002782           91 TLKCLRSWKGHDGPAIGMACHP---SG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD  166 (882)
Q Consensus        91 ~~~~~~~~~~h~~~V~~l~fs~---~~-~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~  166 (882)
                      .+..+..+..|..+|..++|-+   +. .+|+.-....++.+|+..+|..+...........|+.+.|-+.+.+.+.|+ 
T Consensus        98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-  176 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS-  176 (1062)
T ss_pred             hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc-
Confidence            9999999999999999999976   33 456666677899999999999988877666777889999876655555554 


Q ss_pred             CCcEEEEECC-------CCeEEEEecCccc----------------c---------eEEEEEccCCCEEEEEeCCCeEEE
Q 002782          167 DATVRVWDLL-------AKKCVATLDKHFS----------------R---------VTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       167 dg~I~vwd~~-------~~~~~~~l~~h~~----------------~---------v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      .|.+.+-+.-       .++.++.-..|.+                .         ...++|+|.-+.++.......+.+
T Consensus       177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv  256 (1062)
T KOG1912|consen  177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV  256 (1062)
T ss_pred             CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence            4555555432       2333333333322                0         113567887777777777888999


Q ss_pred             EecCCceeeeeecCcce-eeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc-eeeeecCC
Q 002782          215 WDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS  292 (882)
Q Consensus       215 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~  292 (882)
                      +|++-..++..++.... ..-+.+.|++.                     ...++++..+|.+.+|-.+.. ..+.....
T Consensus       257 ~dle~~~~l~vvpier~~akfv~vlP~~~---------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~  315 (1062)
T KOG1912|consen  257 FDLEYECCLAVVPIERGGAKFVDVLPDPR---------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNA  315 (1062)
T ss_pred             EcchhhceeEEEEeccCCcceeEeccCCC---------------------cceEEEEecCCeEEEEEeeccCccccccch
Confidence            99998888887776543 34445555553                     347899999999999986653 11111100


Q ss_pred             ceeeee------ccCCcCcceeEEEEccC-CCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCC-
Q 002782          293 DVTISF------EMDDSKRGFTAATVLPS-NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE-  364 (882)
Q Consensus       293 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  364 (882)
                      ......      ...-....+......|. ...+.+...+|...+|.+..+.....      ...+..+-+....|... 
T Consensus       316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~------~~s~~iel~~pf~f~~~~  389 (1062)
T KOG1912|consen  316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD------YRSSSIELVLPFDFNLST  389 (1062)
T ss_pred             hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc------cccccccccccccccCce
Confidence            000000      00001112233334455 45566677788888888774321100      00011111111222110 


Q ss_pred             ---CCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC------EEEEEeecCCeEEEEeCCCceEEe
Q 002782          365 ---EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK------ILIVTGSKDNSVRLWDSESRCCVG  435 (882)
Q Consensus       365 ---~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~  435 (882)
                         ....+..-+.||     ...+|.......  ..+-..+.. ..|.++      .+++.|...|+|.++|+.++....
T Consensus       390 ~~v~k~~l~~LS~dg-----~h~sGs~~~~~~--p~p~~t~~~-~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~  461 (1062)
T KOG1912|consen  390 KLVGKTSLISLSDDG-----SHSSGSTCVRMR--PMPELTKVE-NDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA  461 (1062)
T ss_pred             eehhhccccchhhcC-----CCCCCceeeecc--cCcccceee-cCCCCCccceeeeeEEeecCCceEEEEEecchhhhh
Confidence               011111112222     111111111111  111011110 111111      268999999999999999999999


Q ss_pred             eeecccccEEEEEEccCCCcEEEEeeC----------CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782          436 VGTGHMGAVGAVAFSKKLQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  505 (882)
Q Consensus       436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  505 (882)
                      .+..|.+.|.++.|.....  +++.+.          -+.+.+-|++++-..       ...........+|..+..|..
T Consensus       462 ~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-------~fR~l~~~despI~~irvS~~  532 (1062)
T KOG1912|consen  462 SFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-------RFRGLQKPDESPIRAIRVSSS  532 (1062)
T ss_pred             hhcccccceeeeeecccee--EEEeeeccccccccceeeeEEEEEccccccc-------ccccCCCCCcCcceeeeeccc
Confidence            9999999999999986644  444432          244667777766211       122222345678999999999


Q ss_pred             CcEEEEEcCCCcEEEEeCCCceeE----------EEEe----cc------------------------cCce--------
Q 002782          506 DSLVCTGSQDRTACVWRLPDLVSV----------VTFR----GH------------------------KRGI--------  539 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~~~~~----------~~~~----~h------------------------~~~v--------  539 (882)
                      |+|++....+.-+.+||+++..++          ..+.    .|                        ...+        
T Consensus       533 ~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~  612 (1062)
T KOG1912|consen  533 GRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSAL  612 (1062)
T ss_pred             CceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhh
Confidence            999999999999999998543211          1110    01                        0001        


Q ss_pred             -------------------EEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--EeecCcCCEEEEEEEeCCCEEEEeec
Q 002782          540 -------------------WSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGA  598 (882)
Q Consensus       540 -------------------~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~g~~l~s~~~  598 (882)
                                         ..++|  .+..++.|..+|++.+||+....-..  ....|........+.|....++.--.
T Consensus       613 ~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~  690 (1062)
T KOG1912|consen  613 VVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLEL  690 (1062)
T ss_pred             hhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEec
Confidence                               11222  26689999999999999975332211  12223333333444554334444444


Q ss_pred             CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      |+ +-+||.+.-..+..+.+-+..-..+...-++..=..-..|.++++-....
T Consensus       691 d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~~~Rf~~m~m  742 (1062)
T KOG1912|consen  691 DW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDNKERFRVMPM  742 (1062)
T ss_pred             Cc-ceecccccceeeeeeccCCcceEEEEEEecccCceecCCCCceeEEeccc
Confidence            44 78899888888887766555544444433333222223344667655443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=179.94  Aligned_cols=247  Identities=24%  Similarity=0.359  Sum_probs=188.9

Q ss_pred             eecccCCceEEEEEeCC-CCcEEEEEEcCCcEEEEeCCC----------------ceeeeeeeCCCcceEEeeeeeecCC
Q 002782          348 RLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------------MSCSYVLAGHSEIVLCLDTCALSSG  410 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~  410 (882)
                      ...+|.+.+..++..+- +..+.++-+..|.|.||++..                .+.+.++.+|...-+.++  |+|-.
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld--WSp~~  223 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD--WSPIK  223 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee--ccccc
Confidence            34455566666665554 455667778889999999752                345677889998888888  66633


Q ss_pred             CEEEEEeecCCeEEEEeCCCceEEe---eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782          411 KILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       411 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  487 (882)
                      .-.+++|.--+.|++|...++.-..   .+.+|+..|-.++|||....+|++||-||+|+|||++.....        ..
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--------~~  295 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--------AA  295 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--------ce
Confidence            3337888888999999988875432   356799999999999999999999999999999999876321        23


Q ss_pred             hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC---ceeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEE
Q 002782          488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIW  563 (882)
Q Consensus       488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iw  563 (882)
                      ....+|..+|+.+.|+.+-.+||+|+.||+++|||+++   ++++..|+-|..+|++|.|+|. ...|++++.|.+|.+|
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            33488999999999999988999999999999999975   4778899999999999999995 5678889999999999


Q ss_pred             ecCCCce-----------e-----eEeecCc--CCEEEEEEEeC-CCEEEEeecCCeEEEE
Q 002782          564 SISDGSC-----------L-----KTFEGHT--SSVLRASFLTR-GAQIVSCGADGLVKLW  605 (882)
Q Consensus       564 d~~~~~~-----------~-----~~~~~h~--~~v~~~~~s~~-g~~l~s~~~dg~i~iw  605 (882)
                      |+.-..-           +     +-+.-|.  ..+..+.|++. ..+|++.+.|| +.||
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9853211           0     1122242  35666777764 34788888888 4444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=6.4e-20  Score=172.35  Aligned_cols=308  Identities=16%  Similarity=0.219  Sum_probs=217.1

Q ss_pred             cceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC
Q 002782          305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS  384 (882)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~  384 (882)
                      .-...+-++|++..+++.+.++.+.+|+++..--....     ...........+.+..  +         +.|+.+-  
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~r~~e--g---------~tvydy~--  111 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSYRYQE--G---------ETVYDYC--  111 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeEEecc--C---------CEEEEEE--
Confidence            34456779999999999999999999998754211100     0000000111111110  0         0111000  


Q ss_pred             CceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec--ccc---cEEEEEEccCCCcEEEE
Q 002782          385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVS  459 (882)
Q Consensus       385 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~v~~s~~~~~~l~s  459 (882)
                             ...|-   .+    .-|+... +++.+.+.-|.+||.-+|+....+.+  |..   .-.+++|+|||. .| .
T Consensus       112 -------wYs~M---~s----~qP~t~l-~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-ql-f  174 (406)
T KOG2919|consen  112 -------WYSRM---KS----DQPSTNL-FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QL-F  174 (406)
T ss_pred             -------eeecc---cc----CCCccce-eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eE-e
Confidence                   00000   00    2244444 88889999999999999988777654  333   345799999998 34 4


Q ss_pred             eeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcCCCcEEEEeCCCceeEEEEecccCc
Q 002782          460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG  538 (882)
Q Consensus       460 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~  538 (882)
                      ++...+|++||+.........  ......-..+..+-|.+++|+|-. +.+|+|+....+-||.-....++..+-+|.++
T Consensus       175 aGykrcirvFdt~RpGr~c~v--y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG  252 (406)
T KOG2919|consen  175 AGYKRCIRVFDTSRPGRDCPV--YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG  252 (406)
T ss_pred             ecccceEEEeeccCCCCCCcc--hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence            567789999998543211100  000011122335678899999954 59999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEeeC-CCcEEEEecCCC-ceeeEeecCcC-CEEEEEE--EeCCCEEEEeecCCeEEEEEcCC-Cee
Q 002782          539 IWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFEGHTS-SVLRASF--LTRGAQIVSCGADGLVKLWTVRT-GEC  612 (882)
Q Consensus       539 v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~-~~~~~~~~h~~-~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~-~~~  612 (882)
                      |+.++|.++|+.|++|.. |-.|-.||++.. .++..+..|.+ .-.++.|  .|+|++|++|+.||.|++||+++ |..
T Consensus       253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence            999999999999999875 778999999864 56777888876 4455666  58899999999999999999998 887


Q ss_pred             EEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       613 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      +..+..|.+.++.++++|--.+++|++..   ++|...++
T Consensus       333 ~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~d  369 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPKD  369 (406)
T ss_pred             ccccccccccccceecCcccceeeeccCc---eeecCCCc
Confidence            88888899999999999998889888865   55655544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=6.5e-20  Score=181.62  Aligned_cols=211  Identities=15%  Similarity=0.223  Sum_probs=182.2

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-cccEE
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG  445 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~  445 (882)
                      .+++.|+..+.|.|||+....+.+.+.+|...|+++.  +...+.+ +++++..|.|.|..+.++.....+... ...|.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~--YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD--YNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE--ecCCcce-eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            5788888889999999998889999999999999998  7777777 999999999999999988777666654 44566


Q ss_pred             EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCC
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~  524 (882)
                      -+.++|..+.+|.+++.+|.|.+||+.....         .......|..+...++|+|. ..+|++.+.|..|.+||..
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp---------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCc---------ccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            8999999998999999999999999986532         34456789999999999994 5788899999999999998


Q ss_pred             CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC
Q 002782          525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG  590 (882)
Q Consensus       525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g  590 (882)
                      .......+. ...+.++++|+++|.+|+.|...|.|..||++.- .++..+..|...|++++|-+.-
T Consensus       240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            776666655 5678999999999999999999999999999864 5788899999999999997753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=7.6e-21  Score=182.26  Aligned_cols=221  Identities=23%  Similarity=0.408  Sum_probs=176.3

Q ss_pred             eecccccEEEEEEccCCC-cEEEEeeCCCeEEEEecCCCCCC------CCCcccccchhhhhhcCCCeeEEEEcCCC-cE
Q 002782          437 GTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPND-SL  508 (882)
Q Consensus       437 ~~~~~~~v~~v~~s~~~~-~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~  508 (882)
                      ...|.+.+..+..++-++ .+.++-+..|.|++|++...-..      ........+..++.+|...-..++|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            345777777777777643 35666688999999998653111      11113344667778899999999999932 34


Q ss_pred             EEEEcCCCcEEEEeCCCcee---EEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCC---ceeeEeecCcCCE
Q 002782          509 VCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDG---SCLKTFEGHTSSV  581 (882)
Q Consensus       509 la~~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v  581 (882)
                      |++|.--+.|++|...++.-   ...+.+|...|..++|||.. ..+++||.||+|+|||++.+   .++.+ ..|.+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence            77787778899999887633   23466799999999999964 58999999999999999988   45555 7899999


Q ss_pred             EEEEEEeCCCEEEEeecCCeEEEEEcCC---CeeEEEeccCCCceEEEEEcCC-CCEEEEEeCCCCEEEEECCCHHHHHH
Q 002782          582 LRASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAAEREE  657 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~  657 (882)
                      +-+.|+.+-.+|++|+.||.++|||+++   ++++.++..|..+|+++.|+|. ...|+++|.|..|.+||+..+...++
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            9999999888999999999999999974   6789999999999999999985 45788899999999999998766544


Q ss_pred             H
Q 002782          658 A  658 (882)
Q Consensus       658 ~  658 (882)
                      .
T Consensus       386 ~  386 (440)
T KOG0302|consen  386 I  386 (440)
T ss_pred             h
Confidence            3

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=9.7e-20  Score=178.77  Aligned_cols=239  Identities=21%  Similarity=0.297  Sum_probs=187.4

Q ss_pred             CCCcEEEEEEcCCcEEEEeCCCcee---------------------eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          364 EEEQYLAVATNIEQVQVYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       364 ~~~~~l~~~~~~~~i~i~d~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      ..++++|+|+.+..|.|||+.-...                     .....+|++.|..+.  +...-+.+|++|+.|.+
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKT  267 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCce
Confidence            3568999999999999999852111                     011236888888888  66666678999999999


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      |.+||+.++++...+..|.+.|.++.|+|....+|++|+.|++|.+.|++....          ....-...+.|..++|
T Consensus       268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------SGKEWKFDGEVEKVAW  337 (463)
T ss_pred             EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------cCceEEeccceEEEEe
Confidence            999999999999999999999999999999999999999999999999985321          1111224567889999


Q ss_pred             cCCC-cEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCce--eeEeecC
Q 002782          503 APND-SLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC--LKTFEGH  577 (882)
Q Consensus       503 s~~~-~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h  577 (882)
                      .|.. ..+++++.||+++-+|+++. +++.+++.|..+|.++++++.- .+++|++.|+.|++|++..-..  +..-.-.
T Consensus       338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~  417 (463)
T KOG0270|consen  338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK  417 (463)
T ss_pred             cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence            9865 56778889999999999876 8999999999999999999854 5789999999999999865433  2111111


Q ss_pred             cCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCeeEE
Q 002782          578 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIA  614 (882)
Q Consensus       578 ~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~~~~  614 (882)
                      -+...|.++.|+-. .++.||..+.++|||+.++..+.
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            23344556666544 57788888899999998876543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=2.8e-19  Score=173.56  Aligned_cols=161  Identities=24%  Similarity=0.421  Sum_probs=139.8

Q ss_pred             CCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782           59 GSDTITALALSPDDK-LLFSSGHSREIRVWDLSTL---------KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV  128 (882)
Q Consensus        59 ~~~~I~~l~~spd~~-~las~~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v  128 (882)
                      ...+|..+.|.++.. .||+|+.|..|++|-+..+         +.+..+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            356899999999877 9999999999999988543         234567789999999999999999999999999999


Q ss_pred             EECC--------C--------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceE
Q 002782          129 WDVD--------G--------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT  192 (882)
Q Consensus       129 wd~~--------~--------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~  192 (882)
                      |-..        +        ......+++|...|..++|+|++..  +++++.|..+++||+..|.....+..|...+.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~--l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF--LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce--eeeeeccceEEEEEeccceeEeeccccccccc
Confidence            9765        2        2344567799999999999998765  99999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782          193 SMAITSDGSTLISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~  221 (882)
                      .++|.|-++++++-+.|...+.+.+...+
T Consensus       170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             eeecchhhhhhhhhccCcccceeeeeeee
Confidence            99999999999999999877776665433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=5.6e-20  Score=182.06  Aligned_cols=288  Identities=16%  Similarity=0.220  Sum_probs=214.5

Q ss_pred             eCCCcEEEEECCCCeEEEEeecCC--CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--eE--EEEecCcccceEEE
Q 002782          121 GADRKVLVWDVDGGFCTHYFKGHK--GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KC--VATLDKHFSRVTSM  194 (882)
Q Consensus       121 ~~dg~v~vwd~~~~~~~~~~~~h~--~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--~~--~~~l~~h~~~v~~l  194 (882)
                      +....+++||+........+..|.  ..+.+++|.... ...+++.+.|..|++|.-...  +.  +....+.  .-.|+
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv   85 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCV   85 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccc-eEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHH
Confidence            334569999997655443443332  238888887652 244555667888999964332  11  1122222  33444


Q ss_pred             EEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782          195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  274 (882)
Q Consensus       195 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  274 (882)
                      +......++++||..+.|++||++...+                                                    
T Consensus        86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~----------------------------------------------------  113 (673)
T KOG4378|consen   86 ACASQSLYEISGGQSGCVKIWDLRAKLI----------------------------------------------------  113 (673)
T ss_pred             hhhhcceeeeccCcCceeeehhhHHHHH----------------------------------------------------
Confidence            4445557888999999999998863221                                                    


Q ss_pred             eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782          275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  354 (882)
Q Consensus       275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (882)
                                                                                             .+.+.+|..
T Consensus       114 -----------------------------------------------------------------------hr~lkdh~s  122 (673)
T KOG4378|consen  114 -----------------------------------------------------------------------HRFLKDHQS  122 (673)
T ss_pred             -----------------------------------------------------------------------hhhccCCcc
Confidence                                                                                   133445677


Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  433 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  433 (882)
                      .|.++.|.. .+.++|.++..|.|.+..+.++.....+... ...+.-+.  +++..+.+|.+++.+|.|.+||+....+
T Consensus       123 tvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~--ys~skr~lL~~asd~G~VtlwDv~g~sp  199 (673)
T KOG4378|consen  123 TVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR--YSPSKRFLLSIASDKGAVTLWDVQGMSP  199 (673)
T ss_pred             eeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee--cccccceeeEeeccCCeEEEEeccCCCc
Confidence            788888876 6679999999999999999998887777655 34455777  8898999999999999999999998776


Q ss_pred             Eee-eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          434 VGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       434 ~~~-~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                      +.. ...|..+...++|+|....++++.+.|+.|.+||.....           .........+...++|+++|.+|+.|
T Consensus       200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----------s~~~l~y~~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----------STDRLTYSHPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----------ccceeeecCCcceeeecCCceEEEee
Confidence            654 457999999999999999899999999999999987432           11112244578999999999999999


Q ss_pred             cCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC
Q 002782          513 SQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD  548 (882)
Q Consensus       513 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~  548 (882)
                      +..|.|..||++.. .++.++..|...|++++|-|.-
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999865 5677888899999999998754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=9e-20  Score=178.98  Aligned_cols=283  Identities=22%  Similarity=0.342  Sum_probs=208.6

Q ss_pred             EEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeeEEEeecCC----CCEEEEEEcC-------CCCEEEEEeCCCcE
Q 002782           63 ITALALSPDDKLLFSSGHS---R--EIRVWDLSTLKCLRSWKGHD----GPAIGMACHP-------SGGLLATAGADRKV  126 (882)
Q Consensus        63 I~~l~~spd~~~las~~~d---g--~i~iwd~~~~~~~~~~~~h~----~~V~~l~fs~-------~~~~lasg~~dg~v  126 (882)
                      .--+.+-|+.++|+++-.+   .  .|+||+-.... +  +-.|.    ..-.|++|..       .|+|+|.|+.|..|
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-l--YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-L--YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-e--eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            3456677877777776332   2  34555433211 1  11122    2334555532       46799999999999


Q ss_pred             EEEECCCC---eEE------------------EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782          127 LVWDVDGG---FCT------------------HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD  185 (882)
Q Consensus       127 ~vwd~~~~---~~~------------------~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~  185 (882)
                      .|||+.-.   .+.                  ..-.+|+..|..++|... .+.+||+||.|.+|++||+.+++|..++.
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCcceehh
Confidence            99998421   111                  112368888999999877 45789999999999999999999999999


Q ss_pred             CcccceEEEEEccC-CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccc
Q 002782          186 KHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  264 (882)
Q Consensus       186 ~h~~~v~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (882)
                      .|.+.|.++.|+|. ..+|++|+.|++|.+.|.+......                                        
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----------------------------------------  323 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----------------------------------------  323 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------------------------------------
Confidence            99999999999984 5789999999999999987411000                                        


Q ss_pred             eEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceee
Q 002782          265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  344 (882)
Q Consensus       265 ~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~  344 (882)
                                  +-|.                                                                
T Consensus       324 ------------~~wk----------------------------------------------------------------  327 (463)
T KOG0270|consen  324 ------------KEWK----------------------------------------------------------------  327 (463)
T ss_pred             ------------ceEE----------------------------------------------------------------
Confidence                        0011                                                                


Q ss_pred             eeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782          345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  423 (882)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  423 (882)
                             ..+.|-.++|.+.....+.+++.+|.++-+|+++. +++..+..|.++|.+++  +++....++++++.|+.|
T Consensus       328 -------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~--~n~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  328 -------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS--VNIQTPGLLSTASTDKVV  398 (463)
T ss_pred             -------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE--ecCCCCcceeeccccceE
Confidence                   12455666777778889999999999999999865 88999999999999999  777766779999999999


Q ss_pred             EEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          424 RLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       424 ~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      .+|++.....  +..-...-+...|.++.|+-..+++.|+..+.+++||+.+.
T Consensus       399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9999875432  22222233457788888888888999999999999998764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=7.5e-20  Score=167.12  Aligned_cols=306  Identities=20%  Similarity=0.335  Sum_probs=205.1

Q ss_pred             EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec-CcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782          136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      +...+++|.+.|+++.|-.++.   |++|..-|.|++|++.+.+....++ .|...|+.+.-.|+ ..|.+-++|+.+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            4567789999999999987643   9999999999999999999988888 56678999999887 57889999999999


Q ss_pred             EecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCce
Q 002782          215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  294 (882)
Q Consensus       215 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~  294 (882)
                      |++.....+.....  .++.+.|                                                         
T Consensus        82 w~ia~s~~i~i~Si--~~nslgF---------------------------------------------------------  102 (323)
T KOG0322|consen   82 WTIAYSAFISIHSI--VVNSLGF---------------------------------------------------------  102 (323)
T ss_pred             EEccCcceEEEeee--ecccccc---------------------------------------------------------
Confidence            99876432221110  0000000                                                         


Q ss_pred             eeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc
Q 002782          295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  374 (882)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  374 (882)
                                   ...++.+.....      ..+..|.....                            +..+.--+..
T Consensus       103 -------------CrfSl~~~~k~~------eqll~yp~rgs----------------------------de~h~~D~g~  135 (323)
T KOG0322|consen  103 -------------CRFSLVKKPKNS------EQLLEYPSRGS----------------------------DETHKQDGGD  135 (323)
T ss_pred             -------------ccceeccCCCcc------hhheecCCccc----------------------------chhhhhccCc
Confidence                         000000100000      00000000000                            0000000000


Q ss_pred             CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEE----------eeeecccccE
Q 002782          375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV----------GVGTGHMGAV  444 (882)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v  444 (882)
                      .-++++-+-.       -.+..+.+.|..+.+.-....++++|..+|.+.+||+.++..+          .....|..+|
T Consensus       136 ~tqv~i~dd~-------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv  208 (323)
T KOG0322|consen  136 TTQVQIADDS-------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV  208 (323)
T ss_pred             cceeEccCch-------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence            0111111111       1123455666653333344556888999999999999997433          2334689999


Q ss_pred             EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782          445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       445 ~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~  524 (882)
                      .++.+.+.-. .=++|+.+..+..|+++.....      ........-....+..+.+-||++.+|+++.|+.|+||..+
T Consensus       209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~gs------lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  209 LSLDYASSCD-RGISGGADDKLVMYSLNHSTGS------LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             eeeeechhhc-CCcCCCccccceeeeeccccCc------ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            9999986533 3478888888999998754211      11112222234568889999999999999999999999999


Q ss_pred             CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782          525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                      ++.++..++-|...|.+++|+|+..++|+++.|++|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=4.8e-18  Score=165.06  Aligned_cols=160  Identities=22%  Similarity=0.372  Sum_probs=136.4

Q ss_pred             cccccccCCceEEccCCC-EEEEEeCC-eEEEEEcCCCc---------eeeeecCCCccEEEEEEcCCCCEEEEEeCCCc
Q 002782           15 VLQQFYGGGPLVVSSDGS-FIACACGE-SINIVDLSNAS---------IKSTIEGGSDTITALALSPDDKLLFSSGHSRE   83 (882)
Q Consensus        15 ~~~~~y~g~~va~s~dg~-~la~~~~~-~I~i~d~~~~~---------~~~~l~~~~~~I~~l~~spd~~~las~~~dg~   83 (882)
                      ..+|+|.   +.|.+++. .+|+++++ .|+||-++.++         .+..|..|...|+++.|+|+|..||+|+.+|.
T Consensus        12 ~~~pv~s---~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~   88 (434)
T KOG1009|consen   12 DHEPVYS---VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE   88 (434)
T ss_pred             CCCceEE---EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence            4556776   88887776 89998887 89999886432         34567889999999999999999999999999


Q ss_pred             EEEEECC--------C--------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 002782           84 IRVWDLS--------T--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV  147 (882)
Q Consensus        84 i~iwd~~--------~--------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V  147 (882)
                      |.+|-..        +        ....+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+.+|..-|
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv  168 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV  168 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc
Confidence            9999765        2        23456678899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782          148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKK  179 (882)
Q Consensus       148 ~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~  179 (882)
                      ..++|.|-.++  +++-+.|...+.+++...+
T Consensus       169 qgvawDpl~qy--v~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  169 QGVAWDPLNQY--VASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             ceeecchhhhh--hhhhccCcccceeeeeeee
Confidence            99999997665  8888888877777665444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=2.2e-20  Score=196.22  Aligned_cols=283  Identities=20%  Similarity=0.322  Sum_probs=220.4

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      ++.+.||...|.|.+|...|.++++|+.|..++||..+++.++.+..||.+.|+.++.+.++.++|+++.|..|+||.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe-----cCcccceEEEEEccCCCEEEEEe
Q 002782          133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG  207 (882)
Q Consensus       133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-----~~h~~~v~~l~~s~~~~~l~s~~  207 (882)
                      .+.++..+.||++.|++++|+|      ..+.+.||++++||.. ...+...     ......+.++.|...+..+.+++
T Consensus       263 ~~~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCchHHHHhccccceeeeccCc------cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence            9999999999999999999999      4588999999999987 1111111     01123456666666777777777


Q ss_pred             CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceee
Q 002782          208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  287 (882)
Q Consensus       208 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~  287 (882)
                      .|+.-..|.+......                                                                
T Consensus       336 ~d~ea~n~e~~~l~~~----------------------------------------------------------------  351 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWR----------------------------------------------------------------  351 (1113)
T ss_pred             CCcccccchhhHhhhh----------------------------------------------------------------
Confidence            7776666654311000                                                                


Q ss_pred             eecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc
Q 002782          288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ  367 (882)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (882)
                                                  ...+.                                     -+.+.++-..
T Consensus       352 ----------------------------~~~li-------------------------------------f~t~ssd~~~  366 (1113)
T KOG0644|consen  352 ----------------------------SNLLI-------------------------------------FVTRSSDLSS  366 (1113)
T ss_pred             ----------------------------ccceE-------------------------------------EEeccccccc
Confidence                                        00000                                     0000111223


Q ss_pred             EEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEE
Q 002782          368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV  447 (882)
Q Consensus       368 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  447 (882)
                      +.+++-++-.+.+|++.++.....+.+|.+.+..+.  ++|-+..+..+++.||...|||+-.|..+.......+.+...
T Consensus       367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~  444 (1113)
T KOG0644|consen  367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG  444 (1113)
T ss_pred             cceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence            455555667889999999999999999999999999  888888878889999999999999988877765445677788


Q ss_pred             EEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          448 AFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      +||++|.. ++....-|.+.+......
T Consensus       445 kFSqdgts-~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  445 KFSQDGTS-IALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             ccCCCCce-EecCCCCCceEEeccCCC
Confidence            99999884 555566688888766543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=9.1e-20  Score=199.80  Aligned_cols=246  Identities=22%  Similarity=0.357  Sum_probs=200.9

Q ss_pred             ceEEeeeeeecCCCE---EEEEeecCCeEEEEeCCCc------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEE
Q 002782          398 IVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV  468 (882)
Q Consensus       398 ~v~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~  468 (882)
                      ....++  |.+.+..   +++.|..||.|.+||...-      ..+.....|.+.|..+.|++...++|++|+.||.|.|
T Consensus        66 rF~kL~--W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   66 RFNKLA--WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cceeee--ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            455666  4343333   5899999999999997652      3455677899999999999999889999999999999


Q ss_pred             EecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCCCceeEEEEecccC--ceEEEEEc
Q 002782          469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFS  545 (882)
Q Consensus       469 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s  545 (882)
                      ||+..........        .......|.+++|+.. ...||+++.+|.+.|||++..+++..+..|..  .+..++|+
T Consensus       144 WDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh  215 (1049)
T KOG0307|consen  144 WDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH  215 (1049)
T ss_pred             eccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence            9998743211111        2334568999999874 56889999999999999999988887776554  47899999


Q ss_pred             CCC-CEEEEeeCCC---cEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC-CEEEEeecCCeEEEEEcCCCeeEEEeccC
Q 002782          546 PVD-QVVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKH  619 (882)
Q Consensus       546 ~~~-~~l~s~~~d~---~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  619 (882)
                      |++ ..|++++.|.   .|.+||++.- ..++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..+...
T Consensus       216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence            986 3566666553   5999998764 5788899999999999999866 89999999999999999999999999988


Q ss_pred             CCceEEEEEcCCCC-EEEEEeCCCCEEEEECCCHH
Q 002782          620 EDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       620 ~~~v~~l~~s~~~~-~l~s~~~dg~i~iw~~~~~~  653 (882)
                      .+.+..+.|.|... .|+.++-||.|.|+.+....
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            88999999999877 77888999999999887654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=6.5e-18  Score=158.99  Aligned_cols=238  Identities=16%  Similarity=0.262  Sum_probs=180.4

Q ss_pred             CCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--CCcceE-EeeeeeecCCCEEEEEeecCCeEEEEeC-CCceEEee---
Q 002782          364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVL-CLDTCALSSGKILIVTGSKDNSVRLWDS-ESRCCVGV---  436 (882)
Q Consensus       364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~---  436 (882)
                      ++..++++.+.+.-|.+||.-+++....+.+  |.+.++ +...+|+|+|.. |++| ....|++||+ +.|+....   
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaG-ykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAG-YKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eeec-ccceEEEeeccCCCCCCcchhh
Confidence            5677899999999999999999987665543  444332 233349999998 6655 4679999998 44432211   


Q ss_pred             ----eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782          437 ----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  512 (882)
Q Consensus       437 ----~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  512 (882)
                          -.+..+-+.+++|+|.....++.|+...++-++.-....          +...+.+|.+.|+.+.|.++|+.|.+|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~----------pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR----------PLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC----------ceeeecccCCCeeeEEeccCcCeeccc
Confidence                123467899999999888789999999999888766442          666777999999999999999999998


Q ss_pred             cC-CCcEEEEeCCCc-eeEEEEecccC-ceE--EEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeEeecCcCCEEEEEE
Q 002782          513 SQ-DRTACVWRLPDL-VSVVTFRGHKR-GIW--SVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASF  586 (882)
Q Consensus       513 s~-dg~i~iwd~~~~-~~~~~~~~h~~-~v~--~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~  586 (882)
                      .. |-.|..||++.. .++..+..|.. .=.  -....|++++|++|+.||.|++||+++ |..+..+..|...++.+++
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            75 568999999754 55566666654 222  345568999999999999999999998 7778888889999999999


Q ss_pred             EeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          587 LTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       587 s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                      .|--..+++++.......=+-++|+..
T Consensus       349 nP~mpilatssGqr~f~~~~dD~ge~~  375 (406)
T KOG2919|consen  349 NPIMPILATSSGQRIFKYPKDDNGELE  375 (406)
T ss_pred             CcccceeeeccCceeecCCCccccccc
Confidence            999778888776543333333444444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.7e-18  Score=172.40  Aligned_cols=125  Identities=27%  Similarity=0.463  Sum_probs=111.9

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEE
Q 002782           95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVW  173 (882)
Q Consensus        95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vw  173 (882)
                      -..+.||++.|.++.|+.+|.+|++|+.|-.+.|||.-..+.++.+. ||.+.|.++.|.|..+..++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            45678999999999999999999999999999999999888888775 89999999999999888999999999999999


Q ss_pred             ECCCC----------eEEEEecCcccceEEEEEccCC-CEEEEEeCCCeEEEEecCC
Q 002782          174 DLLAK----------KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       174 d~~~~----------~~~~~l~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~  219 (882)
                      |+...          ........|...|..++..|++ ..+.+++.||+++.+|++.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            99852          2444567789999999999988 7889999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.2e-18  Score=184.65  Aligned_cols=245  Identities=18%  Similarity=0.325  Sum_probs=196.9

Q ss_pred             ceEEEEEeCCCCc---EEEEEEcCCcEEEEeCCCc------eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782          355 EILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSM------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  425 (882)
Q Consensus       355 ~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  425 (882)
                      ....++|.+....   +++.|..||.|.+||...-      ..+.....|.+.|..++  |++....++++|+.||.|.|
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCCCcEEE
Confidence            3456666554433   6899999999999998652      23446678999999999  88988877999999999999


Q ss_pred             EeCCCceEEeee--ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC--CCeeEEE
Q 002782          426 WDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLA  501 (882)
Q Consensus       426 wd~~~~~~~~~~--~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~  501 (882)
                      ||+.+-+.-...  ....+.|.+++|+..-.++|++++.+|.+.+||++....          ...+..+.  ..+..++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p----------ii~ls~~~~~~~~S~l~  213 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP----------IIKLSDTPGRMHCSVLA  213 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------ccccccCCCccceeeee
Confidence            999874433222  235678999999998888999999999999999986531          11111122  3578999


Q ss_pred             EcCCC-cEEEEEcCCC---cEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEee
Q 002782          502 VAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFE  575 (882)
Q Consensus       502 ~s~~~-~~la~~s~dg---~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~  575 (882)
                      |+|++ ..+++++.|.   .|.+||++.. .+++.+.+|..+|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+.
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            99986 5566666554   5999998754 5677888999999999999976 899999999999999999999999999


Q ss_pred             cCcCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCe
Q 002782          576 GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE  611 (882)
Q Consensus       576 ~h~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~  611 (882)
                      ...+.+..+.|+|... .++.++-||.|-|+.+..+.
T Consensus       294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            8889999999999766 77888889999999987654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.2e-15  Score=153.08  Aligned_cols=596  Identities=13%  Similarity=0.132  Sum_probs=330.8

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccE-EEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeE
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTI-TALALSP-------DDKLLFSSGHSREIRVWDLSTLKCL   95 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I-~~l~~sp-------d~~~las~~~dg~i~iwd~~~~~~~   95 (882)
                      ++.++.....+.++.+..+.+|+-.+...+..+.-..+-| +.+-.-|       ....++.++.||.+.+-+ ..++.-
T Consensus        19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE   97 (737)
T KOG1524|consen   19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVE   97 (737)
T ss_pred             eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchhh
Confidence            5778888877777777777777654443332222211111 2222211       235688889999999987 577888


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~  175 (882)
                      +...+|.+.|.+-.|+|||.-|++++.||.|++|.-. |-.-.++-....+|.|++|.|+++. ++++.  .+.+.+=.+
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~--g~h~~IKpL  173 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNS-IVFCQ--GGHISIKPL  173 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCc-eEEec--CCeEEEeec
Confidence            8899999999999999999999999999999999954 3333344456778999999999764 44443  355777777


Q ss_pred             CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782          176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT  255 (882)
Q Consensus       176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (882)
                      .....+-..+.|.+-|.++.|++....+++||.|-..++||..........+..-++.++.+.|+.              
T Consensus       174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~--------------  239 (737)
T KOG1524|consen  174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK--------------  239 (737)
T ss_pred             ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecccc--------------
Confidence            777777788999999999999999999999999999999998776666666677788888888873              


Q ss_pred             hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782          256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  335 (882)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  335 (882)
                                 .+..+.-.++|+-..+                     ...+..+++++++.++.+++..|.+.+-...+
T Consensus       240 -----------~~~v~S~nt~R~~~p~---------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  240 -----------DYLLWSYNTARFSSPR---------------------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             -----------ceeeeeeeeeeecCCC---------------------ccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence                       2223333344432222                     25678899999999999999999887754432


Q ss_pred             cccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEE
Q 002782          336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  415 (882)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  415 (882)
                      ..-           .              .++.=++......|.+-|+.++.+ ..+.. ...+....    -.-.+ ++
T Consensus       288 q~l-----------~--------------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~-p~rv~k~s----L~Y~h-Lv  335 (737)
T KOG1524|consen  288 QQL-----------V--------------SGNLKATSKSRKSITVRDVATGVQ-DILEF-PQRVVKFS----LGYGH-LV  335 (737)
T ss_pred             hhh-----------h--------------hccceeEeeccceEEeehhhhhHH-HHhhC-ccceeeee----eceeE-EE
Confidence            210           0              122223334445566666665544 22222 22233222    11112 23


Q ss_pred             EeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782          416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  495 (882)
Q Consensus       416 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  495 (882)
                      ++. ...+++|.-........+.+....+.-+.-..  +.+++.  ...++.+|........... .+  ....     .
T Consensus       336 vaT-s~qvyiys~knwntpiiidgre~tr~lieq~e--k~fli~--dgsSi~lytyegR~~~np~-~P--g~~~-----d  402 (737)
T KOG1524|consen  336 VAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE--KYFLIL--DGSSIWLYTYEGRLHLNPR-YP--GSQI-----D  402 (737)
T ss_pred             EEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh--hheEEe--cCcEEEEEEecCceecCCC-CC--Cccc-----c
Confidence            222 23566765444322222332222221111111  112222  2234455544322100000 00  0000     0


Q ss_pred             CeeEEEEcCCCcEEEEE--cCCCcEEEEeC-CCceeEEE--EecccCceEEEEEc----CCCCEEEEeeCCCcEEEEecC
Q 002782          496 DINSLAVAPNDSLVCTG--SQDRTACVWRL-PDLVSVVT--FRGHKRGIWSVEFS----PVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~--s~dg~i~iwd~-~~~~~~~~--~~~h~~~v~~l~~s----~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ..+.-.+|-....|+.-  .....+.+||. .+++....  +-.|...|..++..    ++++.++.-..++.+.|=.++
T Consensus       403 lL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK  482 (737)
T KOG1524|consen  403 LLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK  482 (737)
T ss_pred             cccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh
Confidence            01111122222234432  23345778887 66655432  22366666666654    355667777777777776665


Q ss_pred             CCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE------EEe-cc----CCCceEEEEEcCCCCEE
Q 002782          567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI------ATY-DK----HEDKIWALAVGKKTEMF  635 (882)
Q Consensus       567 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~------~~~-~~----h~~~v~~l~~s~~~~~l  635 (882)
                      ....-..+..-..-|..++|+.. .-+++|-.|+.+.||-..+--.+      .++ ..    ......-+.|  -|+.+
T Consensus       483 rfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqv  559 (737)
T KOG1524|consen  483 RFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQV  559 (737)
T ss_pred             hcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEE
Confidence            43221222212334666888754 45667888999999977542111      011 00    0001111122  45555


Q ss_pred             EEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHH
Q 002782          636 ATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIE  715 (882)
Q Consensus       636 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  715 (882)
                      ..--.||.+.--.+..-..                -+-+++...++..|++++.-..+. ++...+..+.-........+
T Consensus       560 tirrsdG~LlpisV~py~~----------------iL~e~~sssKWeqavRLCrfv~eq-TMWAtlAa~Av~~~~m~~~E  622 (737)
T KOG1524|consen  560 TIRRSDGALLPISVNPYPE----------------ILHEYLSSSKWEQAVRLCRFVQEQ-TMWATLAAVAVRKHQMQISE  622 (737)
T ss_pred             EEEeccCceEeeeccccHH----------------HHHHHhccchHHHHHHHHHhccch-HHHHHHHHHHHhhccccHHH
Confidence            5555666654444332211                122345556788888887654432 33444443332211111223


Q ss_pred             HHHhccCHHHHHHHHHHHHH
Q 002782          716 KALHALGKEEIRQLLEYVRE  735 (882)
Q Consensus       716 ~~~~~l~~~~~~~ll~~~~~  735 (882)
                      .+-..+.+.+...++..+..
T Consensus       623 iAYaA~~~idKVsyin~iK~  642 (737)
T KOG1524|consen  623 IAYAAALQIDKVSYINHIKA  642 (737)
T ss_pred             HHHHHhhchhhHHHHHHHhc
Confidence            33333334444455555543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=161.07  Aligned_cols=300  Identities=19%  Similarity=0.261  Sum_probs=213.8

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~------~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~  169 (882)
                      .+.+|.+.|.++.||.++++||+|+.|..++||+++.      .+++.... .|...|.|++|....  ..+++|..+++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcce
Confidence            3567999999999999999999999999999999853      34444333 366899999998754  45999999999


Q ss_pred             EEEEECCCCeEEEEecC--cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccc
Q 002782          170 VRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF  247 (882)
Q Consensus       170 I~vwd~~~~~~~~~l~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (882)
                      |...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||.+.....        +.              
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~--------~~--------------  186 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP--------IS--------------  186 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC--------Cc--------------
Confidence            99999999998877743  3458999999999999999999999999998753210        00              


Q ss_pred             cccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782          248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ  327 (882)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  327 (882)
                                                                                             +++..    
T Consensus       187 -----------------------------------------------------------------------~~~~A----  191 (609)
T KOG4227|consen  187 -----------------------------------------------------------------------LVLPA----  191 (609)
T ss_pred             -----------------------------------------------------------------------eeeec----
Confidence                                                                                   00000    


Q ss_pred             EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee-e------eeCCCcceE
Q 002782          328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-V------LAGHSEIVL  400 (882)
Q Consensus       328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~------~~~~~~~v~  400 (882)
                                             .+......+.|.|....++++++..+-+.+||........ .      ++.....-.
T Consensus       192 -----------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M  248 (609)
T KOG4227|consen  192 -----------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM  248 (609)
T ss_pred             -----------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence                                   0112234566777788889999999999999986543321 1      111111112


Q ss_pred             EeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-------cccEEEEEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782          401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG  473 (882)
Q Consensus       401 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~  473 (882)
                      +..  |+|.|.. +.+--....-.+||+.+.++...-..|       ...+.+++|..+.  -+++|+.+-.|.+|.++.
T Consensus       249 ~~~--~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  249 GSL--WSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             hee--eCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCC
Confidence            222  8899988 444444444556787764443222222       2357778887764  389999999999999875


Q ss_pred             CCCCCC-------------CcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          474 LSDDAE-------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       474 ~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      .....-             .........++.+|..-++.+.|+|...+|++.+..+.++||.-
T Consensus       324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            422111             11222345667899999999999999999999999999999974

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-16  Score=164.29  Aligned_cols=551  Identities=16%  Similarity=0.204  Sum_probs=346.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeecCCCcEEEEEEecCCCccEEEEEeC
Q 002782          102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD  166 (882)
Q Consensus       102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~---------------~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~  166 (882)
                      .....|++|+....|+|+||.||.++|-.+.+..               .-+++.||++.|..+.|..+.+.  |-+...
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCC
Confidence            3567899999999999999999999999885431               22467799999999999987655  899999


Q ss_pred             CCcEEEEECCCCeEEEEe--cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCc
Q 002782          167 DATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF  244 (882)
Q Consensus       167 dg~I~vwd~~~~~~~~~l--~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (882)
                      +|.|.||-+-.+.-...+  ....+.|.+++|+.||..+.....||.|.+=.++..                        
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------  147 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------  147 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence            999999998777644433  234467999999999999999999997766444322                        


Q ss_pred             ccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEe
Q 002782          245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA  324 (882)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (882)
                                                      |+|.-+-.                   ......+.++++...++....
T Consensus       148 --------------------------------RIwgKeLk-------------------g~~l~hv~ws~D~~~~Lf~~a  176 (1189)
T KOG2041|consen  148 --------------------------------RIWGKELK-------------------GQLLAHVLWSEDLEQALFKKA  176 (1189)
T ss_pred             --------------------------------eecchhcc-------------------hheccceeecccHHHHHhhhc
Confidence                                            23322111                   012235566777777777888


Q ss_pred             CCeEEEEEecccccccceeeee----eeecccCCceEEEEE-------eCCCCcEEEEEEcCCcEEEEeCCCceeeeeee
Q 002782          325 DQQLLLYTTVEVPEKKMELILS----KRLVGYNEEILDLKF-------LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA  393 (882)
Q Consensus       325 ~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  393 (882)
                      +|...+|+...+-..+......    .........+..+.|       .+++...++++..+|.+.+..-.+......+.
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d  256 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD  256 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence            8888888877654333333222    222222334555555       45788999999999999988765544443333


Q ss_pred             CCCcceEEeeeeeecCCCEEEEEeecC---------CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee---
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKD---------NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS---  461 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~---  461 (882)
                      .. -.+....  |+++|.. ++.++.+         +.|.++.. -|..+..++.....|++++|-..|-.+.++..   
T Consensus       257 tg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfi  331 (1189)
T KOG2041|consen  257 TG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFI  331 (1189)
T ss_pred             cc-cEeecce--ecCCCcE-EEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceE
Confidence            22 4455555  8888887 6665533         24444442 35566777777788888888655432111000   


Q ss_pred             ---------------------------CCCeEEEEecCCCCCCCCCcccccchhhhhhc--------------------C
Q 002782          462 ---------------------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--------------------G  494 (882)
Q Consensus       462 ---------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--------------------~  494 (882)
                                                 ....|.+||..+...................|                    .
T Consensus       332 yfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~  411 (1189)
T KOG2041|consen  332 YFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR  411 (1189)
T ss_pred             EEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence                                       12345667765432111000000000000000                    0


Q ss_pred             C--------------------CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee--------------------------
Q 002782          495 K--------------------DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--------------------------  528 (882)
Q Consensus       495 ~--------------------~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~--------------------------  528 (882)
                      +                    +|.-.-..-++..++.+|.+. +.+|.....+.                          
T Consensus       412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d  490 (1189)
T KOG2041|consen  412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQD  490 (1189)
T ss_pred             cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccccCCCCccchhh
Confidence            0                    111111222566677777654 67775421110                          


Q ss_pred             ------EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeE
Q 002782          529 ------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV  602 (882)
Q Consensus       529 ------~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i  602 (882)
                            ..++.|...+|.+++.+  +++|..+-..|.|.-|++.+......+. -...+.++++..+...++....-|.+
T Consensus       491 ~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~  567 (1189)
T KOG2041|consen  491 RTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV  567 (1189)
T ss_pred             ceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence                  13344567788888887  7899999999999999998887766654 45678889999888899988888999


Q ss_pred             EEEEcC---CCeeEE-EeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHH--------------------H
Q 002782          603 KLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE--------------------A  658 (882)
Q Consensus       603 ~iwd~~---~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------------~  658 (882)
                      .+.|+.   +|+.+. .+......||.+.|..|...|+.-.....+.|++-.++++...                    .
T Consensus       568 tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~I  647 (1189)
T KOG2041|consen  568 TFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKI  647 (1189)
T ss_pred             eeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhH
Confidence            998886   455444 4444567899999988876555444444444444333222111                    0


Q ss_pred             hhhh---------HHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHH
Q 002782          659 FRKE---------EEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQL  729 (882)
Q Consensus       659 ~~~~---------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l  729 (882)
                      ....         +-++...++..+++......+|++.+.+..+| ++..++.+.....-....-++++.++.+..-.+|
T Consensus       648 l~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp-rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~  726 (1189)
T KOG2041|consen  648 LLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP-RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL  726 (1189)
T ss_pred             hcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch-HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH
Confidence            0000         01112234566777788888999988877776 4566665544333334456778888888888888


Q ss_pred             HHHHHHHhcC
Q 002782          730 LEYVREWNTK  739 (882)
Q Consensus       730 l~~~~~~~~~  739 (882)
                      .++++.-..+
T Consensus       727 vkrl~~i~s~  736 (1189)
T KOG2041|consen  727 VKRLRTIHSK  736 (1189)
T ss_pred             HHHhhhhhhH
Confidence            8877665543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=5.8e-17  Score=173.88  Aligned_cols=280  Identities=17%  Similarity=0.188  Sum_probs=202.6

Q ss_pred             CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE--EE----EecCcccceEEEEE
Q 002782          123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VA----TLDKHFSRVTSMAI  196 (882)
Q Consensus       123 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~----~l~~h~~~v~~l~~  196 (882)
                      ++.+.||++.........-.....|.++.|+|.. ..+++.|+.+|.|.+||+..+..  ..    ....|..+++.+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            3579999998763333333367889999999984 46899999999999999987664  22    22468889999999


Q ss_pred             ccCCC--EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782          197 TSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  274 (882)
Q Consensus       197 s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  274 (882)
                      ..+..  -+++++.||.|..|+++...........+...                                         
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-----------------------------------------  338 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-----------------------------------------  338 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence            76544  49999999999999776433211000000000                                         


Q ss_pred             eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782          275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  354 (882)
Q Consensus       275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (882)
                                                                                            ....-.....
T Consensus       339 ----------------------------------------------------------------------~~~~~~~~~~  348 (555)
T KOG1587|consen  339 ----------------------------------------------------------------------HKGQQSSKAV  348 (555)
T ss_pred             ----------------------------------------------------------------------cccccccccc
Confidence                                                                                  0000001123


Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--------eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      .+..+.|.+.+...+++|+..|.|..-+.....        ....+..|.++|.++.  ++|-+..++.+++ |.+++||
T Consensus       349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriW  425 (555)
T KOG1587|consen  349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIW  425 (555)
T ss_pred             ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEec
Confidence            457778888888888888888888874433221        2335567889999999  8888877566666 9999999


Q ss_pred             eCC-CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782          427 DSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  505 (882)
Q Consensus       427 d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  505 (882)
                      ... ...++..+..+...+++++|||....+++++..||.+.+||+......+        ......+....+.+.|+++
T Consensus       426 s~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--------v~s~~~~~~~l~~~~~s~~  497 (555)
T KOG1587|consen  426 SEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--------VLSQKVCSPALTRVRWSPN  497 (555)
T ss_pred             cccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--------cccccccccccceeecCCC
Confidence            988 6677777778888899999999999899999999999999998653222        2222223556778899999


Q ss_pred             CcEEEEEcCCCcEEEEeCCC
Q 002782          506 DSLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       506 ~~~la~~s~dg~i~iwd~~~  525 (882)
                      |+.|++|...|++.+|++..
T Consensus       498 g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2e-16  Score=143.01  Aligned_cols=226  Identities=21%  Similarity=0.330  Sum_probs=174.6

Q ss_pred             eEEccCCCEEEEEeCC-eEEEEEcCC---------Cc-eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782           25 LVVSSDGSFIACACGE-SINIVDLSN---------AS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK   93 (882)
Q Consensus        25 va~s~dg~~la~~~~~-~I~i~d~~~---------~~-~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~   93 (882)
                      -++||.+++++++... .|.+..+++         |+ .+...++|..+|..++|.  ..+|.+|+. |.|+=|.+....
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~   92 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE   92 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence            6789999999998865 888888753         22 344557899999999999  456777765 999999986432


Q ss_pred             e------EEEe--ecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccE
Q 002782           94 C------LRSW--KGHD-----GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL  160 (882)
Q Consensus        94 ~------~~~~--~~h~-----~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~  160 (882)
                      .      +...  .-|.     ..|.+|..+|..+-+++++.|+.+.-||+++|+....++||+.-|.++.--.....  
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q--  170 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ--  170 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc--
Confidence            2      1111  1122     46899999998888888889999999999999999999999999999988433333  


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecC---------cc-cceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782          161 LFSGSDDATVRVWDLLAKKCVATLDK---------HF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       161 l~sgs~dg~I~vwd~~~~~~~~~l~~---------h~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      +++|+.||++|+||..+++++..+..         |. ..|-+++.  +..+|++|+. ..+.+|.++..++...+|...
T Consensus       171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa  247 (325)
T KOG0649|consen  171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPA  247 (325)
T ss_pred             eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEeccc
Confidence            99999999999999999999987743         22 23555554  4558887774 459999999999999999988


Q ss_pred             eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782          231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  283 (882)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~  283 (882)
                      .+..+.|..+                         .++.+|..+.+.-|.+..
T Consensus       248 ~v~~v~F~~d-------------------------~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  248 RVHLVDFVDD-------------------------CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ceeEeeeecc-------------------------eEEEeccccceeeeeecc
Confidence            8887777643                         567777777777776643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.7e-18  Score=175.22  Aligned_cols=259  Identities=19%  Similarity=0.248  Sum_probs=195.5

Q ss_pred             eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC--------ceEEeeeecccccEEEEEEccCCCcEEEEee
Q 002782          390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  461 (882)
Q Consensus       390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~  461 (882)
                      .++..|.+.+..+.  +.+.... +++++.||.+.+|+++.        -+++.++.+|.++|.|+++++++. .+++|+
T Consensus       288 ~tl~s~~d~ir~l~--~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg  363 (577)
T KOG0642|consen  288 FTLRSHDDCIRALA--FHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGG  363 (577)
T ss_pred             eeeecchhhhhhhh--cCCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeec
Confidence            36677888888886  5555555 99999999999999832        246778999999999999999987 799999


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecc--cCce
Q 002782          462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGI  539 (882)
Q Consensus       462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h--~~~v  539 (882)
                      .||+|+.|++..........-.......+.+|...+..+++|+....|++++.||++++|+.....+ .++...  ..-.
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            9999999998843322221122234566789999999999999999999999999999999877666 333322  2233


Q ss_pred             EEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEeecC-------cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe
Q 002782          540 WSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGH-------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  611 (882)
Q Consensus       540 ~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~  611 (882)
                      +++.|-... ...++...-+.-.++++..+..+..+...       ...+..+.+.|.+.+.+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            455554333 12222222233333344444444444321       1346778888999999999999999999999999


Q ss_pred             eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       612 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      .+.....|...++++++.|+|.+|++++.|+.+++|+.....
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            999999999999999999999999999999999999986543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=4.2e-17  Score=174.98  Aligned_cols=277  Identities=18%  Similarity=0.234  Sum_probs=204.6

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE--Ee----eeecccccEEEEEE
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF  449 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~v~~  449 (882)
                      +.+.+|++...............|.|+.  +.|....+++.|+.+|.|.+||+..+..  ..    ....|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            3789999987754444445567888888  7788777899999999999999987654  22    23368899999999


Q ss_pred             ccCCC-cEEEEeeCCCeEEEEecCCCCCCCCCcccccch--hhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCC
Q 002782          450 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       450 s~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~  525 (882)
                      ..+.. .-+++++.||.|..|+++...............  .........+++++|.+ +-..+++|+.+|.|.--....
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            65433 237888889999999887653211111000000  00112234678999988 457789999999887733322


Q ss_pred             c--------eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC-CCceeeEeecCcCCEEEEEEEeCCC-EEEE
Q 002782          526 L--------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS  595 (882)
Q Consensus       526 ~--------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s  595 (882)
                      .        +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||-.. .+++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            2        2233556689999999999988877777779999999987 6777888888888899999999654 6677


Q ss_pred             eecCCeEEEEEcCCC--eeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          596 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       596 ~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      +..||.|.+||+...  +++.+...+......+.|++.|+.|+.|...|.+.+|++.....
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~  520 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA  520 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence            888999999999754  45555555556667788899999999999999999999976543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=7.5e-18  Score=154.17  Aligned_cols=290  Identities=16%  Similarity=0.231  Sum_probs=203.2

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee-CCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      .+.+|...+.++.|-..  .+|..|...|.+.+|++.+......++ .+...|+.+.  ..|+ +. +.+-+.|+.+.+|
T Consensus         9 vLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILW   82 (323)
T ss_pred             Eeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEE
Confidence            34478888888888643  358999999999999999998888888 5677888886  5555 44 8889999999999


Q ss_pred             eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCCCC----CC-CCcccccchhhhhhcCCCeeEE
Q 002782          427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSD----DA-EQPMNLKAKAVVAAHGKDINSL  500 (882)
Q Consensus       427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~  500 (882)
                      ++.-+..+..   |.-.+.++-|.+..   +...+... ..-.++-+....    +. ................+.+.|.
T Consensus        83 ~ia~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   83 TIAYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EccCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            9987554432   33445555554431   22222211 111222111100    00 0000000011112233455666


Q ss_pred             EEcC-CC--cEEEEEcCCCcEEEEeCCCceeE----------EEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782          501 AVAP-ND--SLVCTGSQDRTACVWRLPDLVSV----------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       501 ~~s~-~~--~~la~~s~dg~i~iwd~~~~~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  567 (882)
                      .+.. ++  -++++|-++|.+.+||+.++..+          .....|..+|.++.|.+....=++|+.+..+..|++..
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            5433 22  35667889999999999987433          33346899999999998777777888888899999864


Q ss_pred             C--ce--eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCC
Q 002782          568 G--SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL  643 (882)
Q Consensus       568 ~--~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  643 (882)
                      .  .+  ...+.-..-.|..+.+-||++.++|+|.||.|+||+.++..++..+..|...|++++|+|+...+|+++.|+.
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence            3  22  1222333456788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEC
Q 002782          644 VNLWHD  649 (882)
Q Consensus       644 i~iw~~  649 (882)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=8.4e-18  Score=159.81  Aligned_cols=195  Identities=20%  Similarity=0.328  Sum_probs=154.6

Q ss_pred             CEEEEEeC-CeEEEEEcCCCceeeeecCCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEE--EeecCC-CCE
Q 002782           32 SFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSP--DDKLLFSSGHSREIRVWDLSTLKCLR--SWKGHD-GPA  105 (882)
Q Consensus        32 ~~la~~~~-~~I~i~d~~~~~~~~~l~~~~~~I~~l~~sp--d~~~las~~~dg~i~iwd~~~~~~~~--~~~~h~-~~V  105 (882)
                      ..+|++.. +.|++||..+|+.+..++++...+..++|..  ....+.+|+.||+|++||+.+.....  .+..|. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            45666655 4999999999999999999999999999987  35678899999999999998765544  345555 567


Q ss_pred             EEEEEcCCCCEEEEEe----CCCcEEEEECCCCeE-EEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782          106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFC-THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK  179 (882)
Q Consensus       106 ~~l~fs~~~~~lasg~----~dg~v~vwd~~~~~~-~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~  179 (882)
                      .+++..-.++.+++|.    .+-.|.+||++.... +.. ...|...|++++|+|. +..+|++||.||.|.++|+....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCc
Confidence            7777777888888886    467899999987765 333 3479999999999998 55789999999999999986543


Q ss_pred             E---EEEecCcccceEEEEEccCC-CEEEEEeCCCeEEEEecCCceeeeeec
Q 002782          180 C---VATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       180 ~---~~~l~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      .   +...-.|.+.|..+.|..++ +.+.+.+...+..+|++..+.....++
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            2   22233466789999998776 568888999999999999877544433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=156.62  Aligned_cols=405  Identities=17%  Similarity=0.208  Sum_probs=245.5

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEeecCC
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las-~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      ...|||+|+++|+...-.+.|-|.++-+..+.+.. -+.|.-+.|+.|..++.. ++.++.|.+|++...+-...+....
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            36799999999999999999999998887665543 457888999999887664 5789999999999999888998889


Q ss_pred             CCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc---EEEEECCCC
Q 002782          103 GPAIGMACHPSGGL-LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT---VRVWDLLAK  178 (882)
Q Consensus       103 ~~V~~l~fs~~~~~-lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~---I~vwd~~~~  178 (882)
                      .++.+++|||||+. |.+..-|-.|.||.+.+....+. +-....+..++|+||++.  .+..+.-..   +.+..-...
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f--~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQF--CAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCce--eeeeecccHHHHHHHHhhHHH
Confidence            99999999999965 55566789999999988776543 323455689999999875  444443211   111111122


Q ss_pred             eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhc
Q 002782          179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK  258 (882)
Q Consensus       179 ~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (882)
                      ..+..+....-..+++.|+|||..|+         +||---.-                                     
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Ley-------------------------------------  202 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEY-------------------------------------  202 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEE---------Eecchhhh-------------------------------------
Confidence            23444444555678999999987665         45421000                                     


Q ss_pred             cccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccc
Q 002782          259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE  338 (882)
Q Consensus       259 ~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~  338 (882)
                                      .|..|...                      -+                                
T Consensus       203 ----------------kv~aYe~~----------------------lG--------------------------------  212 (447)
T KOG4497|consen  203 ----------------KVYAYERG----------------------LG--------------------------------  212 (447)
T ss_pred             ----------------eeeeeeec----------------------cc--------------------------------
Confidence                            00000000                      01                                


Q ss_pred             ccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee
Q 002782          339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS  418 (882)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  418 (882)
                                       +..+.|+| .++++++|+.|+.+++.|--+.+..                    ++.+-.+.-
T Consensus       213 -----------------~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f--------------------~eflhl~s~  254 (447)
T KOG4497|consen  213 -----------------LKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPF--------------------GEFLHLCSY  254 (447)
T ss_pred             -----------------eeEEEecc-ccceEEeeccchhhhhhceeeeeeh--------------------hhhccchhc
Confidence                             12223333 4556666666666666554333222                    111111111


Q ss_pred             cCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782          419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  498 (882)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (882)
                      .|.+..+..-++.+.+      .-...++.|.|..-  =+.-.... =.+|.....   .......++..-.......+.
T Consensus       255 ~dp~~~~~~ke~~~~~------ql~~~cLsf~p~~~--~a~~~~~s-e~~YE~~~~---pv~~~~lkp~tD~pnPk~g~g  322 (447)
T KOG4497|consen  255 HDPTLHLLEKETFSIV------QLLHHCLSFTPTDL--EAHIWEES-ETIYEQQMT---PVKVHKLKPPTDFPNPKCGAG  322 (447)
T ss_pred             cCchhhhhhhhhcchh------hhcccccccCCCcc--ccCccccc-hhhhhhhhc---ceeeecccCCCCCCCcccccc
Confidence            1111111110111000      01122344444321  01000000 001111000   000000111111122244677


Q ss_pred             EEEEcCCCcEEEEEcC--CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec
Q 002782          499 SLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  576 (882)
Q Consensus       499 ~~~~s~~~~~la~~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  576 (882)
                      -++|++|..++|+-..  -+.+.+||++..+....+. ...+|....|.|....|+.+.+...+++|......++.. .+
T Consensus       323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~  400 (447)
T KOG4497|consen  323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PK  400 (447)
T ss_pred             eeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CC
Confidence            8999999999998643  3569999998877655554 577899999999999999888888899999865444433 33


Q ss_pred             CcCCEEEEEEEeCCCEEEEeecCC
Q 002782          577 HTSSVLRASFLTRGAQIVSCGADG  600 (882)
Q Consensus       577 h~~~v~~~~~s~~g~~l~s~~~dg  600 (882)
                      ..-.|..++|..+|..++..+.|.
T Consensus       401 ~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  401 KGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             CCceeeeEEecCCCcEEEEEcCCc
Confidence            446799999999999999988886

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=6.1e-19  Score=185.50  Aligned_cols=291  Identities=22%  Similarity=0.314  Sum_probs=232.0

Q ss_pred             eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      ....+.+.||...|.|+.|.. .+.++++|++|..++||..++..+.....||.+.++.++  .+.. +.++++++.|..
T Consensus       180 mk~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdla--vs~~-n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLA--VSSN-NTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhc--cchh-hhhhhhcccCce
Confidence            344567889999999999876 788999999999999999999999999999999999996  4444 445999999999


Q ss_pred             EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782          423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  502 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  502 (882)
                      |++|.+..+.++..+.+|++.|++++|+|-     .+.+.||++++||..-...      ...+.........-+.++.|
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~------~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPR------IYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccccc------ccCCCCCCcccccceeeeec
Confidence            999999999999999999999999999995     3788999999999872110      01111111223355677888


Q ss_pred             cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE
Q 002782          503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  581 (882)
Q Consensus       503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  581 (882)
                      ..++.-+++++.|+....|.+...      ..+...+.-+.++.| ..+.+++-.+..+++|++.+|...+.+.+|...+
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~  398 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEV  398 (1113)
T ss_pred             cccccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccce
Confidence            889999999999999888876432      112222222233322 2466777788899999999999999999999999


Q ss_pred             EEEEEEeCCCE-EEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          582 LRASFLTRGAQ-IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       582 ~~~~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      ..+.++|.... ..+++.||...|||+-.|.++..+.-....+...+||+||..++....-|.+.|.....++.
T Consensus       399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            99999996654 57899999999999999988887765567788889999999999888888888876554443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.2e-16  Score=144.44  Aligned_cols=235  Identities=16%  Similarity=0.253  Sum_probs=177.1

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCC----------ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCC
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  475 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~  475 (882)
                      ++|.+++ +++|..+|.|-+..+.+          ...+...++|.+++..++|..+   +|++|+. |.|+-|..+...
T Consensus        18 ~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~   92 (325)
T KOG0649|consen   18 ISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEE   92 (325)
T ss_pred             hCCcceE-EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccC-ceEEEeeehhhh
Confidence            6788877 99999999999998653          2234455899999999999954   5676664 999999887543


Q ss_pred             CCCCCccccc---chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEE
Q 002782          476 DDAEQPMNLK---AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI  552 (882)
Q Consensus       476 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  552 (882)
                      +.........   +...-...-..|+++...|..+-+..++.|+.++-||+++|+..++++||..-|.++.--.....++
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil  172 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL  172 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence            2111000000   1111112234789999999887777778999999999999999999999999999999866677899


Q ss_pred             EeeCCCcEEEEecCCCceeeEeecCc----------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc
Q 002782          553 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  622 (882)
Q Consensus       553 s~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~  622 (882)
                      +|+.||++|+||.+++++++.++...          ..|.  +..-+..+|+.|+. -.+.+|.+++.++...+. -..+
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~  248 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPAR  248 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCC-CceeEEeccCCCceEEEe-cccc
Confidence            99999999999999999998876422          1243  33445568887664 479999999999988886 4667


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          623 IWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       623 v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      |..+.|  +...++++|....+.-|.+..
T Consensus       249 v~~v~F--~~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  249 VHLVDF--VDDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eeEeee--ecceEEEeccccceeeeeecc
Confidence            778888  455688888888888887664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.1e-17  Score=157.11  Aligned_cols=272  Identities=18%  Similarity=0.275  Sum_probs=196.7

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC-CCEEEEEeecCCeEEEEeCCCceEEeee--eccc-c
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVG--TGHM-G  442 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-~  442 (882)
                      ..++++...|.|++||..+++....+.++...+..+.  +..+ +...+.+++.||+|++||+++......+  ..+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            5788888889999999999999999999998888887  4442 4445999999999999999886554433  3343 4


Q ss_pred             cEEEEEEccCCCcEEEEee----CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCc
Q 002782          443 AVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRT  517 (882)
Q Consensus       443 ~v~~v~~s~~~~~~l~s~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~  517 (882)
                      +..+++..-.++ ++++|.    .+-.|.+||++....        ........|..+|+++.|+|+ .++|++||.||-
T Consensus       119 ~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  119 PFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             cceEeeccCcCC-eEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence            566666654444 667664    467899999986531        134556789999999999995 589999999999


Q ss_pred             EEEEeCCCcee---EEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEeecCc------------CCE
Q 002782          518 ACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SSV  581 (882)
Q Consensus       518 i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~------------~~v  581 (882)
                      |.+||+.....   +...-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+...++...            .-+
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            99999975422   22222377889999999876 458888888999999999998766554321            011


Q ss_pred             EEEEEEeCCCEEEEeec-CCeEEEEEcC---CC---eeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          582 LRASFLTRGAQIVSCGA-DGLVKLWTVR---TG---ECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~-dg~i~iwd~~---~~---~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      .......++..++.++. -|...++-+.   ++   +.+..+.+ |..-|.++.|...+.++.|||.||.+.+|+.
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            11111123445555554 4555554332   22   34556665 6677888889888999999999999999996

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.8e-17  Score=158.01  Aligned_cols=213  Identities=16%  Similarity=0.290  Sum_probs=173.7

Q ss_pred             eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcC
Q 002782          436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQ  514 (882)
Q Consensus       436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~  514 (882)
                      ...+|.++|..++|+|-+.+.+++||.|.+|.+|.+........   ...+...+.+|...|.-++|+|- .+.|++++.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            45689999999999998888999999999999999986532111   12356677899999999999995 478899999


Q ss_pred             CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC-CEEEEEEEeCCCEE
Q 002782          515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQI  593 (882)
Q Consensus       515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l  593 (882)
                      |.+|.+|++.+++.+.++. |...|+++.|+.||.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|..+|..+
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999999999999988 999999999999999999999999999999999999998888876 45667888999844


Q ss_pred             EEee---cCCeEEEEEcCCCe---eEEEeccCCCceEEEEEcCCCCEEEE-EeCCCCEEEEECCCHH
Q 002782          594 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA  653 (882)
Q Consensus       594 ~s~~---~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iw~~~~~~  653 (882)
                      -+|-   .+..+-+||..+-+   ...+++. .+.|.---+.+|...+.. |-.|+.|+.|.+..+.
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            4432   36789999876543   3455553 445555557788877664 5579999999988654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=4.7e-18  Score=172.12  Aligned_cols=267  Identities=21%  Similarity=0.333  Sum_probs=190.6

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR  124 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~--------~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg  124 (882)
                      ..++..|.+.|.+++|.|....|++++.||.|.+|+++        .-+++.+|++|.+||.|+++.+++..+.+|+.||
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            34677899999999999999999999999999999993        2368899999999999999999999999999999


Q ss_pred             cEEEEECC------CC----eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC--cccceE
Q 002782          125 KVLVWDVD------GG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--HFSRVT  192 (882)
Q Consensus       125 ~v~vwd~~------~~----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~--h~~~v~  192 (882)
                      +|+.|++.      ..    .....+.||.+.|+.+++|+..+.  |++++.||+++.|+.....+ .++..  ..+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999653      11    244567899999999999997666  99999999999999876665 33322  223344


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782          193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  272 (882)
Q Consensus       193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (882)
                      ++.+....  ++-...+.....+++.+.+....+..         .+..                              .
T Consensus       444 svd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~---------~~s~------------------------------~  482 (577)
T KOG0642|consen  444 SVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLI---------FESS------------------------------A  482 (577)
T ss_pred             eEeeccch--hHhhhhhcccccccchhhhhhhheee---------cccc------------------------------C
Confidence            45543322  11111222333333332221111100         0000                              0


Q ss_pred             CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782          273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  352 (882)
Q Consensus       273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  352 (882)
                      .+..+                                                                          .
T Consensus       483 ~~~~~--------------------------------------------------------------------------~  488 (577)
T KOG0642|consen  483 SPGPR--------------------------------------------------------------------------R  488 (577)
T ss_pred             CCccc--------------------------------------------------------------------------c
Confidence            00000                                                                          0


Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  432 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  432 (882)
                      ...+.-+...+ +..+.+++..++.|+++|..++..+.....|...+++++  +.|+|.+ +++++.|+.+++|.+....
T Consensus       489 ~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla--i~~ng~~-l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  489 YPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA--IDPNGPY-LMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceeccee--ecCCCce-EEeecCCceeehhhccchh
Confidence            01111122222 556778888899999999999999999999999999999  8898887 9999999999999998887


Q ss_pred             EEeeeeccc
Q 002782          433 CVGVGTGHM  441 (882)
Q Consensus       433 ~~~~~~~~~  441 (882)
                      ++.....|.
T Consensus       565 ~~~es~~~r  573 (577)
T KOG0642|consen  565 CVLESTAHR  573 (577)
T ss_pred             eeecccccc
Confidence            776655554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=6.3e-17  Score=156.52  Aligned_cols=206  Identities=19%  Similarity=0.283  Sum_probs=163.3

Q ss_pred             eeecCCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCC
Q 002782           54 STIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADR  124 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~spd-~~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~-~~lasg~~dg  124 (882)
                      ..+.||.++|..++|+|- ...||+|+.|.+|.||++..+       +++..+.||...|-.++|+|.. +.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            355789999999999994 567899999999999999754       4677889999999999999965 5788999999


Q ss_pred             cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCccc-ceEEEEEccCCCEE
Q 002782          125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTL  203 (882)
Q Consensus       125 ~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~-~v~~l~~s~~~~~l  203 (882)
                      +|.+||+.+|..+.++. |...|.++.|+.||..  +++++.|..|+|||..+++.+..-.+|.+ .-..+.|-.+|..+
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCce--eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            99999999999888888 9999999999998876  99999999999999999999999888877 45566788888844


Q ss_pred             EEEe---CCCeEEEEecCCceee---eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEE
Q 002782          204 ISAG---RDKVVNLWDLRDYSCK---LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  277 (882)
Q Consensus       204 ~s~~---~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  277 (882)
                      -+|-   .+..+-+||....+..   ..+.....+.--.+                      +.+.....++|-.|+.||
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy----------------------D~dt~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY----------------------DPDTSIVYLCGKGDSSIR  289 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeee----------------------cCCCCEEEEEecCCcceE
Confidence            4442   5678999997765432   22222222221111                      122345677888899999


Q ss_pred             EEECCCc
Q 002782          278 MWNADSA  284 (882)
Q Consensus       278 ~w~~~~~  284 (882)
                      .|.+...
T Consensus       290 YyEit~d  296 (472)
T KOG0303|consen  290 YFEITNE  296 (472)
T ss_pred             EEEecCC
Confidence            9998766

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=1.5e-16  Score=147.54  Aligned_cols=268  Identities=21%  Similarity=0.344  Sum_probs=199.7

Q ss_pred             CCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC-------CcEEEEeCCCc---------ee
Q 002782          325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI-------EQVQVYDLSSM---------SC  388 (882)
Q Consensus       325 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~---------~~  388 (882)
                      ++.+.+..+....    .......+..+.++|..++-+|.+..+|+++.++       ....+|.+...         ++
T Consensus        39 dNqVhll~~d~e~----s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~  114 (370)
T KOG1007|consen   39 DNQVHLLRLDSEG----SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC  114 (370)
T ss_pred             cceeEEEEecCcc----chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence            4666666655443    2233455667889999999999999999998773       23678987532         23


Q ss_pred             eeeee-CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-Eeeee-----cccccEEEEEEccCCCcEEEEee
Q 002782          389 SYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGT-----GHMGAVGAVAFSKKLQNFLVSGS  461 (882)
Q Consensus       389 ~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~v~~s~~~~~~l~s~~  461 (882)
                      +..+. .+-+.+.|+.  |.|++.. +++-. |..|.+|++..+.. ...+.     .+....++-+|+|....--+...
T Consensus       115 v~~Ldteavg~i~cve--w~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVE--WEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhcCCHHHhCceeeEE--EcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence            33343 4556889999  7788887 55444 88999999987655 22221     35667888899983332355566


Q ss_pred             CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc-EEEEEcCCCcEEEEeCCCc-eeEEEEecccCce
Q 002782          462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGI  539 (882)
Q Consensus       462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v  539 (882)
                      .|+++..||+++...         ...+..+|+..+..+.|.|+.+ +|++++.||.|+|||.+.. .++..+.+|.-.|
T Consensus       191 ~d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             CCCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence            789999999986532         4455678999999999999875 6789999999999999754 6788899999999


Q ss_pred             EEEEEcCC-CCEEEEeeCCCcEEEEecCCC-----------------------------ceeeEeecCcCCEEEEEEEeC
Q 002782          540 WSVEFSPV-DQVVITASGDKTIKIWSISDG-----------------------------SCLKTFEGHTSSVLRASFLTR  589 (882)
Q Consensus       540 ~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~~~~s~~  589 (882)
                      +++.|+|. ++++++|+.|..|.+|....-                             ..+.++..|..+|.+++||.-
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA  341 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence            99999994 678999999999999975321                             123467789999999999876


Q ss_pred             CCE-EEEeecCCeEEEEEcCC
Q 002782          590 GAQ-IVSCGADGLVKLWTVRT  609 (882)
Q Consensus       590 g~~-l~s~~~dg~i~iwd~~~  609 (882)
                      ..+ +++-+.||.+.|=.+..
T Consensus       342 dPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  342 DPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             CCeeEEEeccCceEEeecCCh
Confidence            665 57889999998876643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.7e-17  Score=155.21  Aligned_cols=248  Identities=17%  Similarity=0.188  Sum_probs=181.8

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  429 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  429 (882)
                      |...|.++.|.. ....+.+|.++++|...|+++.+.+..+..  ..+.|+.++  .+|.++. +++.+.++.|.+||..
T Consensus       104 H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~--~~P~DN~-~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  104 HRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMD--QHPTDNT-LIVVTRAKLVSFIDNR  179 (609)
T ss_pred             cccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecc--cCCCCce-EEEEecCceEEEEecc
Confidence            556788888876 667888999999999999999988766543  335899998  8888776 9999999999999987


Q ss_pred             Cce-EE--eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782          430 SRC-CV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  506 (882)
Q Consensus       430 ~~~-~~--~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  506 (882)
                      ... ..  ..+.........+.|+|..+.++++.+..+-+-+||..........   ......+......-.++.|+|+|
T Consensus       180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~---~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ---RSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh---hhccccCcccchhhhheeeCCCC
Confidence            654 11  1222344567788999998989999999999999998764321100   00011111112233578899999


Q ss_pred             cEEEEEcCCCcEEEEeCCCceeEEEEecccC-------ceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------
Q 002782          507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDG-----------  568 (882)
Q Consensus       507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-----------  568 (882)
                      +.+.+--....-.+||+.+..+..--..|+.       .+.+++|..| ..+++|+.+-.|++|.+...           
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCc
Confidence            9988876666677888877443322222332       4677888754 45999999999999987521           


Q ss_pred             ------------ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          569 ------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       569 ------------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                                  ..+..+.||..-+..+.|+|...+|++.+-...+++|.-
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                        123567899999999999999999999999999999974

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=2.3e-16  Score=173.50  Aligned_cols=180  Identities=21%  Similarity=0.234  Sum_probs=137.0

Q ss_pred             EEcCCCceeeeecCCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCCCE
Q 002782           45 VDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSGGL  116 (882)
Q Consensus        45 ~d~~~~~~~~~l~~~~~~I~~l~~spd~-~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~~~  116 (882)
                      |++ .|..+..+..|+..|..++.++.. .++++|+.||+|++||...-       +...++..-.+++.++.+.+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 577888898899999999988766 99999999999999998531       233344445789999999999999


Q ss_pred             EEEEeCCCcEEEEECCCC--e-----EEEEe--ecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec--
Q 002782          117 LATAGADRKVLVWDVDGG--F-----CTHYF--KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--  185 (882)
Q Consensus       117 lasg~~dg~v~vwd~~~~--~-----~~~~~--~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~--  185 (882)
                      +|+++.||.|.+.+++..  .     +....  +.....|..-+|........++.+..-+.|..||+.......+++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999999752  1     11111  122233445555544333478888899999999998876555543  


Q ss_pred             CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782          186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  225 (882)
Q Consensus       186 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~  225 (882)
                      ...+.|++++.+|.+.++++|+..|.+.+||++-...+..
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS 1232 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec
Confidence            3457899999999999999999999999999986654433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.75  E-value=8e-15  Score=159.82  Aligned_cols=186  Identities=24%  Similarity=0.362  Sum_probs=153.8

Q ss_pred             CCCEEE-EEeCCeEEEEEcCCCceeeeecCCCcc----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCC
Q 002782           30 DGSFIA-CACGESINIVDLSNASIKSTIEGGSDT----ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP  104 (882)
Q Consensus        30 dg~~la-~~~~~~I~i~d~~~~~~~~~l~~~~~~----I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~  104 (882)
                      +.+.++ ..+.+.+.|||...+.....+......    ..-+.++++.-++++|+.-+.|.+|++..-..-..+.||.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            344444 445568999999988877766654332    223345778889999999999999999744444468999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEE
Q 002782          105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT  183 (882)
Q Consensus       105 V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~  183 (882)
                      |..+.++.||.++++.|.|.++++|++++++... ..-+|+..|+.++|+|+    .+++++.|.+.++|+. .+..+..
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~-~~~~l~~  252 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGV-NGTQLEV  252 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEEeccceEEEEEec-ccceehh
Confidence            9999999999999999999999999999988765 66689999999999996    3999999999999975 4555668


Q ss_pred             ecCccc-ceEEEEEccCCCEEEEEeCCCeEEEEecCCc
Q 002782          184 LDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       184 l~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~  220 (882)
                      +.+|.+ .++.++..++...+++++.|+.+++|++...
T Consensus       253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            888875 7999999999999999999999999998654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=5.1e-16  Score=144.05  Aligned_cols=281  Identities=22%  Similarity=0.320  Sum_probs=200.9

Q ss_pred             CCCcEEEEECCCC--eEE-EEeecCCCcEEEEEEecCCCccEEEEEeCC-------CcEEEEECCCC---------eEEE
Q 002782          122 ADRKVLVWDVDGG--FCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLAK---------KCVA  182 (882)
Q Consensus       122 ~dg~v~vwd~~~~--~~~-~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d-------g~I~vwd~~~~---------~~~~  182 (882)
                      .|+.|.+-+++.+  ... ..|..|.+.|+.++-+|-.. .+|+++..+       ..+.||.+...         +++.
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            4577777666443  222 34566889999999999754 567776542       24779987542         3455


Q ss_pred             Eec-CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCcee-eeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782          183 TLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  260 (882)
Q Consensus       183 ~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (882)
                      .+. .+.+.|.++.|.|++..+++-. |..|.+|++..... +..++....                             
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s-----------------------------  166 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES-----------------------------  166 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-----------------------------
Confidence            554 5667999999999999998887 78899999876543 111111000                             


Q ss_pred             cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782          261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  340 (882)
Q Consensus       261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  340 (882)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (370)
T KOG1007|consen  167 --------------------------------------------------------------------------------  166 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeeeeeecccCCceEEEEEeCC-CCcEEEEEEcCCcEEEEeCCCceeeeeee-CCCcceEEeeeeeecCCCEEEEEee
Q 002782          341 MELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGS  418 (882)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~  418 (882)
                               .++.....+-+|+|. +++.++ .++++.+..||+.+..+...+. .|...+..++  +.|+...++++|+
T Consensus       167 ---------~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~g  234 (370)
T KOG1007|consen  167 ---------AEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCG  234 (370)
T ss_pred             ---------ccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcC
Confidence                     001122233445552 444444 4556999999999988776654 6888999999  9999999999999


Q ss_pred             cCCeEEEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCC-------------------
Q 002782          419 KDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-------------------  478 (882)
Q Consensus       419 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~-------------------  478 (882)
                      +||.|++||.+. ..++..+.+|...|+++.|+|....++++|+.|..|.+|.........                   
T Consensus       235 DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer  314 (370)
T KOG1007|consen  235 DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER  314 (370)
T ss_pred             CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence            999999999875 457888999999999999999888899999999999999865432110                   


Q ss_pred             CCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcCCCcEEEEeCCC
Q 002782          479 EQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~  525 (882)
                      ..+..-....+...|...|.+++||.-. =++|+-+.||.+.|=.+..
T Consensus       315 ~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  315 VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            0111122334667899999999998744 5678889999998876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2.2e-16  Score=148.99  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=114.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeecCC
Q 002782           66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHK  144 (882)
Q Consensus        66 l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg-~~dg~v~vwd~~~~~~~~~~~~h~  144 (882)
                      ..|||+|+++|++++- .+.|-|..+.+..+.+.- -..|.-+.|..|.-++..+ ..|+.|.+|++...+-...+...+
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            5799999999999876 888889888776655543 3567788999988876654 578899999999998888899889


Q ss_pred             CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       145 ~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      .++..++|+|||+ .+|.+..-+-.|.||.+.+.++... +.....+..++|+|||++.+.+++-
T Consensus        92 agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   92 AGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             CcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc
Confidence            9999999999976 4677888899999999998886643 3333456899999999999888754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=1.2e-15  Score=153.18  Aligned_cols=437  Identities=13%  Similarity=0.211  Sum_probs=260.6

Q ss_pred             CEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEc
Q 002782           32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH  111 (882)
Q Consensus        32 ~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs  111 (882)
                      .++++..++.+.|.+ +.|+..+.+..|.+.|.|-.|+|||.-|++++.||.|++|. .+|-+..++-....+|.|++|.
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence            356666666777777 57888889999999999999999999999999999999998 4555444555567899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccce
Q 002782          112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV  191 (882)
Q Consensus       112 ~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v  191 (882)
                      |+..-++.+- .+.+.|=.+.-...+-..+.|.+-|.++.|++..+.  +++|+.|-..++||- .|..+..-..|.-+|
T Consensus       155 p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  155 PNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             CCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc--eeecCCceeEEeecc-cCcccccCChhccce
Confidence            9988777653 467888788777777889999999999999997654  999999999999995 677777888899999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEc
Q 002782          192 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  271 (882)
Q Consensus       192 ~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (882)
                      ++++|.|+ +.++.++ -+++++          .-|....+..+.++++|.                       .+.++.
T Consensus       231 TSva~npd-~~~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGT-----------------------Q~a~gt  275 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWS-YNTARF----------SSPRVGSIFNLSWSADGT-----------------------QATCGT  275 (737)
T ss_pred             eeeeeccc-cceeeee-eeeeee----------cCCCccceEEEEEcCCCc-----------------------eeeccc
Confidence            99999999 4444444 334442          234445677788888875                       556666


Q ss_pred             CCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecc
Q 002782          272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  351 (882)
Q Consensus       272 ~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  351 (882)
                      ..|.+.+=-+-...+                           ..+..-++......+.+-+.......         ...
T Consensus       276 ~~G~v~~A~~ieq~l---------------------------~~~n~~~t~~~r~~I~vrdV~~~v~d---------~LE  319 (737)
T KOG1524|consen  276 STGQLIVAYAIEQQL---------------------------VSGNLKATSKSRKSITVRDVATGVQD---------ILE  319 (737)
T ss_pred             cCceEEEeeeehhhh---------------------------hhccceeEeeccceEEeehhhhhHHH---------Hhh
Confidence            666654422211100                           00111122222333333332221110         011


Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      ....+.....   .-.+|++++. ..+++|+-........+.+....+.-+.    ...+.+++  .+..++.+|.....
T Consensus       320 ~p~rv~k~sL---~Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lie----q~ek~fli--~dgsSi~lytyegR  389 (737)
T KOG1524|consen  320 FPQRVVKFSL---GYGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIE----QGEKYFLI--LDGSSIWLYTYEGR  389 (737)
T ss_pred             Cccceeeeee---ceeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhh----hhhhheEE--ecCcEEEEEEecCc
Confidence            1222222221   2224555544 5788887766665555555544442221    11122122  22334555544432


Q ss_pred             eEEee-eeccc-ccE--EEEEEccCCCcEEEEe--eCCCeEEEEec-CCCCCCCCCcccccchhhhhhcCCCeeEEEEc-
Q 002782          432 CCVGV-GTGHM-GAV--GAVAFSKKLQNFLVSG--SSDHTIKVWSF-DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA-  503 (882)
Q Consensus       432 ~~~~~-~~~~~-~~v--~~v~~s~~~~~~l~s~--~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-  503 (882)
                      ..... +.+.. ...  ..+....+   .|+.-  .....+.+||. .++.....        .....|...|..++.. 
T Consensus       390 ~~~np~~Pg~~~dlL~~rtlsLand---tLaird~ad~kvlhlFd~istgk~qgD--------gk~L~hk~~IveIAldq  458 (737)
T KOG1524|consen  390 LHLNPRYPGSQIDLLTWRTLSLAND---TLAIRDNADPKVLHLFDLISTGKRQGD--------GKSLRHKQQIVEIALDQ  458 (737)
T ss_pred             eecCCCCCCcccccccceeeecccc---eEEeecCCCCeeEEeccCCCCCcccCC--------ccccchhhhHHHhHhhc
Confidence            21110 11100 000  12222222   23322  22345677777 44322111        1112244555555543 


Q ss_pred             ---CCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782          504 ---PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       504 ---~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  567 (882)
                         ++++.++.-...+.+.|-...+......+.--...|..++|+.. .-+++|-.|+.+.||-..+
T Consensus       459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn  524 (737)
T KOG1524|consen  459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPN  524 (737)
T ss_pred             cCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCC
Confidence               45667777777777777666543222222223455788899854 4466788899999998754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.2e-16  Score=170.77  Aligned_cols=192  Identities=20%  Similarity=0.253  Sum_probs=145.1

Q ss_pred             CCCEEEEEeecCCeEEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782          409 SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       409 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  487 (882)
                      .... ++++++-..|+|||.....++..+. +....++++.-+....+++++|..||.|++||.+.....       ...
T Consensus      1176 ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------s~v 1247 (1387)
T KOG1517|consen 1176 QSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------SLV 1247 (1387)
T ss_pred             hCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------ccc
Confidence            3344 4445557889999998877766544 455567777776655669999999999999998765322       244


Q ss_pred             hhhhhcCCC--eeEEEEcCCCc-EEEEEcCCCcEEEEeCCCcee--EEEEeccc--C-ceEEEEEcCCCCEEEEeeCCCc
Q 002782          488 AVVAAHGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVS--VVTFRGHK--R-GIWSVEFSPVDQVVITASGDKT  559 (882)
Q Consensus       488 ~~~~~~~~~--i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~~~--~~~~~~h~--~-~v~~l~~s~~~~~l~s~~~d~~  559 (882)
                      ...+.|...  |..+.+-++|- .|++|+.||.|++||++....  ..++..|.  + ..+++..+++...+|+|+. +.
T Consensus      1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred             eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence            556677776  99999998775 499999999999999987422  22233333  3 4999999999999999999 99


Q ss_pred             EEEEecCCCceeeEeec-------CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC
Q 002782          560 IKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  610 (882)
Q Consensus       560 i~iwd~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~  610 (882)
                      |+||++. |+.+..+..       ..+++.+++|+|.-.+|+.|+.|..|.||....+
T Consensus      1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999984 555544432       2357899999999999999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=3.6e-15  Score=157.98  Aligned_cols=269  Identities=12%  Similarity=0.188  Sum_probs=177.7

Q ss_pred             EEEEcCCcEEEEeCCC-ce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-CceE--Eeeeeccccc
Q 002782          370 AVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMGA  443 (882)
Q Consensus       370 ~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~~  443 (882)
                      ++...++.|.+|++.+ +.  ....+.. .+....+.  ++|+++.+.+++..++.|.+|++. ++..  +... ...+.
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~   81 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS   81 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence            3445679999999964 32  3344432 34455565  789999855666678999999986 3332  2222 12345


Q ss_pred             EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEe
Q 002782          444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWR  522 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd  522 (882)
                      ...++++|+++.++++...++.|.+|++........      ..... .+.....+++++|+|++++++ ..++.|.+||
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence            678999999985555555689999999864211000      11111 122346778999999888654 4568999999


Q ss_pred             CCCceeEEE-----Ee-cccCceEEEEEcCCCCEEEEeeC-CCcEEEEecCC--C--ceeeEeecCc------CCEEEEE
Q 002782          523 LPDLVSVVT-----FR-GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--G--SCLKTFEGHT------SSVLRAS  585 (882)
Q Consensus       523 ~~~~~~~~~-----~~-~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~--~--~~~~~~~~h~------~~v~~~~  585 (882)
                      +.+...+..     .. ........+.|+|++++++++.. +++|.+|++..  +  +.+..+..+.      .....+.
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            976332210     11 12344678999999999988876 89999999973  3  3344443221      1234588


Q ss_pred             EEeCCCEEEEeec-CCeEEEEEcCCCe----eEEEeccCCCceEEEEEcCCCCEEEEEeC-CCCEEEEECC
Q 002782          586 FLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS  650 (882)
Q Consensus       586 ~s~~g~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw~~~  650 (882)
                      |+|+|++|+++.. ++.|.+|++....    .+..... ....+.+.++|||++|+++.. ++.|.+|++.
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999999988865 6899999986533    2232222 124567899999999998775 8999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=9e-16  Score=166.12  Aligned_cols=301  Identities=23%  Similarity=0.333  Sum_probs=195.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-CC
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AK  178 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-~~  178 (882)
                      .+-..+.|+|=...++++...-.|+|||++.++++..|..+   ...|+.+.+..+.+..++++|+.||.|+||+-- .+
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            35567889998888999887789999999999998887644   456999999988888899999999999999642 21


Q ss_pred             ----eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782          179 ----KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ  254 (882)
Q Consensus       179 ----~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (882)
                          +.+...            ++=...+-+...-|.|.-|.-.                                    
T Consensus      1145 ~~~~eLVTaw------------~~Ls~~~~~~r~~~~v~dWqQ~------------------------------------ 1176 (1387)
T KOG1517|consen 1145 WKKPELVTAW------------SSLSDQLPGARGTGLVVDWQQQ------------------------------------ 1176 (1387)
T ss_pred             cCCceeEEee------------ccccccCccCCCCCeeeehhhh------------------------------------
Confidence                222211            1111111111111222222211                                    


Q ss_pred             hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782          255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  334 (882)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  334 (882)
                               ..+++++|+-..|++||.........                                             
T Consensus      1177 ---------~G~Ll~tGd~r~IRIWDa~~E~~~~d--------------------------------------------- 1202 (1387)
T KOG1517|consen 1177 ---------SGHLLVTGDVRSIRIWDAHKEQVVAD--------------------------------------------- 1202 (1387)
T ss_pred             ---------CCeEEecCCeeEEEEEecccceeEee---------------------------------------------
Confidence                     12344444455555555443311100                                             


Q ss_pred             ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcc--eEEeeeeeecC
Q 002782          335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEI--VLCLDTCALSS  409 (882)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~--v~~~~~~~~~~  409 (882)
                                   ...+.+..++.+......++.+++|..||.+++||....   ..+...+.|...  |..+.  +.+.
T Consensus      1203 -------------iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s--lq~~ 1267 (1387)
T KOG1517|consen 1203 -------------IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS--LQRQ 1267 (1387)
T ss_pred             -------------cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE--eecC
Confidence                         000112223333333346789999999999999997643   345567778877  87777  5554


Q ss_pred             CCEEEEEeecCCeEEEEeCCCceEEee--eeccc--c-cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782          410 GKILIVTGSKDNSVRLWDSESRCCVGV--GTGHM--G-AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  484 (882)
Q Consensus       410 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~--~-~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  484 (882)
                      |-.-+++|+.+|.|++||+........  ...|.  + ..+++.+++..+ ++++|+. +.|++|++..........   
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~--- 1342 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKY--- 1342 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccccc---
Confidence            443499999999999999987422222  22222  3 599999999877 7888888 999999987653211110   


Q ss_pred             cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782          485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  526 (882)
Q Consensus       485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~  526 (882)
                       ...........+.|++|+|..-++|+|+.|.+|.||.....
T Consensus      1343 -n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1343 -NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             -CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence             11112223456799999999999999999999999986654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5e-17  Score=161.51  Aligned_cols=314  Identities=17%  Similarity=0.289  Sum_probs=237.8

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLVW  129 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~fs~--~~~~lasg~~dg~v~vw  129 (882)
                      ...|.+|.+.|..+.|...|..|++|+.|..|.+|||..++....+ .||...|....|-|  +...+++++.||.|++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            4567889999999999999999999999999999999999887777 46999999989988  34579999999999998


Q ss_pred             ECC-CCeE--EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe---cCccc---ceEEEEEccCC
Q 002782          130 DVD-GGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFS---RVTSMAITSDG  200 (882)
Q Consensus       130 d~~-~~~~--~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~---~v~~l~~s~~~  200 (882)
                      .+. ++.+  +..+..|.++|..++.-|+.. .-|.+++.|+.+.-.|+..+.+...+   ..+..   ...+++..|..
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            874 3333  345667999999999998854 56899999999999999877654333   22333   46778888866


Q ss_pred             C-EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEE
Q 002782          201 S-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW  279 (882)
Q Consensus       201 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w  279 (882)
                      . .+++++.|..+++||.+.......-   ..+.  .+.|.                                       
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~--~f~p~---------------------------------------  329 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENN---GVLD--KFCPH---------------------------------------  329 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhcccc---chhh--hcCCc---------------------------------------
Confidence            5 7889999999999997643211000   0000  00000                                       


Q ss_pred             ECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc-----ceeeeeee-ecccC
Q 002782          280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK-----MELILSKR-LVGYN  353 (882)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~-~~~~~  353 (882)
                                        ....+..-.|+.+.++.++..+++..+|-.|++++........     ..-..... ..||.
T Consensus       330 ------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr  391 (559)
T KOG1334|consen  330 ------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR  391 (559)
T ss_pred             ------------------cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccc
Confidence                              0011233567888999899999999999999999554432211     00112222 56665


Q ss_pred             C--ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          354 E--EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       354 ~--~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      +  .|-.+.|.++...++++|+.-|.|.+|+-.+++.+..+.+....|.|+.  ..|--.. ||+.+-|..|+||-..+.
T Consensus       392 N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE--pHP~~Pv-LAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  392 NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE--PHPHLPV-LASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC--CCCCCch-hhccCCccceeeecCCcc
Confidence            3  5888999999999999999999999999999999999999888999998  7777776 999999999999987544


Q ss_pred             e
Q 002782          432 C  432 (882)
Q Consensus       432 ~  432 (882)
                      .
T Consensus       469 e  469 (559)
T KOG1334|consen  469 E  469 (559)
T ss_pred             c
Confidence            3

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=5e-14  Score=147.99  Aligned_cols=327  Identities=17%  Similarity=0.152  Sum_probs=203.0

Q ss_pred             CEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782           32 SFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA  109 (882)
Q Consensus        32 ~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~  109 (882)
                      +++++..  .+.|.+.|..+.+.+..+......-..++|+|||+++.+++.||.|.++|+.+++.+.+++... ...+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence            4444444  4589999999999999998765554567899999999999999999999999999999998654 457899


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecC-------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782          110 CHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGH-------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       110 fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~  181 (882)
                      +|+||++++++. .++.+.|+|.++.+.+..+...       ...+..+..+|... .++++.-+.+.|.+-|....+.+
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEecccccc
Confidence            999999998876 6799999999999998887632       34678888888744 34555555688888898765533


Q ss_pred             E-EecCcccceEEEEEccCCCEEEEE-eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcc
Q 002782          182 A-TLDKHFSRVTSMAITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK  259 (882)
Q Consensus       182 ~-~l~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (882)
                      . .............|+|++++++.+ ..++.|-++|..+.+....+........                         
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~-------------------------  218 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP-------------------------  218 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE-------------------------
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccc-------------------------
Confidence            2 222233456788999999987765 4677899999887765543322110000                         


Q ss_pred             ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccc
Q 002782          260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK  339 (882)
Q Consensus       260 ~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~  339 (882)
                                                                   .. ..-..+|...           .+|....    
T Consensus       219 ---------------------------------------------~~-~~~~php~~g-----------~vw~~~~----  237 (369)
T PF02239_consen  219 ---------------------------------------------GP-GANFPHPGFG-----------PVWATSG----  237 (369)
T ss_dssp             ---------------------------------------------TT-EEEEEETTTE-----------EEEEEEB----
T ss_pred             ---------------------------------------------cc-cccccCCCcc-----------eEEeecc----
Confidence                                                         00 0000001000           0111100    


Q ss_pred             cceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE---
Q 002782          340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT---  416 (882)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~---  416 (882)
                                               .+...+..-....+.+|+..+.+.+..+...... ..+.  .+|+++++.+.   
T Consensus       238 -------------------------~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~--thP~s~~vwvd~~~  289 (369)
T PF02239_consen  238 -------------------------LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK--THPDSRYVWVDTFL  289 (369)
T ss_dssp             -------------------------SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE----TT-SEEEEE-TT
T ss_pred             -------------------------ccceecccccCCccccchhhcCeEEEEEECCCCc-ceee--cCCCCccEEeeccC
Confidence                                     1111212222245667888888888888877666 5555  78999984444   


Q ss_pred             eecCCeEEEEeCCCceEEeeeeccc-ccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCC
Q 002782          417 GSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGL  474 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~  474 (882)
                      +...++|.++|..+.+.+..+.... ..+..+.|+++|....+|.-..+ .|.+||..+.
T Consensus       290 ~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  290 NPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             -SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             CCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence            3566899999999987776664332 35889999999998777776655 8999998765

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.8e-17  Score=161.07  Aligned_cols=301  Identities=23%  Similarity=0.275  Sum_probs=233.8

Q ss_pred             eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee-eCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKD  420 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d  420 (882)
                      .+.+...+.+|.+.+..+.|.. .+..+++++.+..+.+||..++.....+ .+|...|....+..+.+... +++++.|
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~d  208 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRD  208 (559)
T ss_pred             HhhhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceecccc
Confidence            4455667888999999999987 7889999999999999999888776554 47888887777445555666 9999999


Q ss_pred             CeEEEEeCCC-ceEE--eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC--
Q 002782          421 NSVRLWDSES-RCCV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--  495 (882)
Q Consensus       421 g~i~iwd~~~-~~~~--~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--  495 (882)
                      |.+++-.+.. +.+.  ..+..|.++|..++.-|+...-|.+++.|+.+.-+|+.......       .......+..  
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~  281 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKER  281 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCccc
Confidence            9999976543 3222  34557999999999999999899999999999999988653211       1112222333  


Q ss_pred             -CeeEEEEcCCC-cEEEEEcCCCcEEEEeCCCcee------EEEEec------ccCceEEEEEcCCCCEEEEeeCCCcEE
Q 002782          496 -DINSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIK  561 (882)
Q Consensus       496 -~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~~~~------~~~~~~------h~~~v~~l~~s~~~~~l~s~~~d~~i~  561 (882)
                       ....++..|.. ..+|+|+.|-.+++||.+....      +..+-.      ..-.|++++|+.++.-|+++..|-.|+
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY  361 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY  361 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence             56788999965 4899999999999999864322      222222      234699999998888888888899999


Q ss_pred             EEecC--CC----------ceeeE-eecCcC--CEEEEEE-EeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEE
Q 002782          562 IWSIS--DG----------SCLKT-FEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA  625 (882)
Q Consensus       562 iwd~~--~~----------~~~~~-~~~h~~--~v~~~~~-s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  625 (882)
                      ++.-.  .|          ..++. ++||.+  .|..+-| -|...|+++|+.-|.|.||+-++++.+..+.+...-|+|
T Consensus       362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC  441 (559)
T KOG1334|consen  362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC  441 (559)
T ss_pred             EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence            99532  23          22333 788875  4666765 578899999999999999999999999988887779999


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          626 LAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       626 l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      |.-+|--..||++|-|..|+||--.+
T Consensus       442 LEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  442 LEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             cCCCCCCchhhccCCccceeeecCCc
Confidence            99999999999999999999997543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.2e-14  Score=152.41  Aligned_cols=471  Identities=14%  Similarity=0.121  Sum_probs=289.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCC------------CEEEEEeCCCcEEE
Q 002782           61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG------------GLLATAGADRKVLV  128 (882)
Q Consensus        61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~------------~~lasg~~dg~v~v  128 (882)
                      ..-.++.|+|.| ++|-|+. ..|.+-|..+.+.+.++.-|...|+.+.|.|-.            -+||++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            346788999988 4566654 589999999999999999999999999997721            25677777899999


Q ss_pred             EECCCCeEEEEeecCCCcEEEEEEecC--CCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEcc-CCCEEEE
Q 002782          129 WDVDGGFCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLIS  205 (882)
Q Consensus       129 wd~~~~~~~~~~~~h~~~V~~l~f~~~--~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~-~~~~l~s  205 (882)
                      ||...+..+..+..|..++..++|.+.  ..+.+|+.-....+|.+|+..+|+.+...........++.+.| |.+.+..
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            999999999899999999999999764  2335677777788999999999998887776666777888888 5566666


Q ss_pred             EeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce
Q 002782          206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC  285 (882)
Q Consensus       206 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~  285 (882)
                      .+..|.+.+-+.-..+..     ..+...+....+.+..                                         
T Consensus       174 l~s~g~vl~~~~l~~sep-----~~pgk~~qI~sd~Sdl-----------------------------------------  207 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEP-----DVPGKEFQITSDHSDL-----------------------------------------  207 (1062)
T ss_pred             EccCceEEEEeccCCCCC-----CCCceeEEEecCccch-----------------------------------------
Confidence            677776666543221100     0000000000000000                                         


Q ss_pred             eeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCC
Q 002782          286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE  365 (882)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (882)
                                                   ......+.+.+       ..+.      ......+.   .....++|+|.-
T Consensus       208 -----------------------------~~lere~at~n-------s~ts------~~~sa~fi---ty~a~faf~p~~  242 (1062)
T KOG1912|consen  208 -----------------------------AHLERETATGN-------STTS------TPASAYFI---TYCAQFAFSPHW  242 (1062)
T ss_pred             -----------------------------hhhhhhhhccc-------cccC------CCcchhHH---HHHHhhhcChhh
Confidence                                         00000000000       0000      00000000   001234556655


Q ss_pred             CcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc--------------
Q 002782          366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--------------  431 (882)
Q Consensus       366 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------  431 (882)
                      .+++..... ..+.++|++-..+.....-..+.+.-+++...+.... +++...||.+.+|-....              
T Consensus       243 rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~-LfclH~nG~ltirvrk~~~~~f~~~~~~l~~d  320 (1062)
T KOG1912|consen  243 RNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA-LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMD  320 (1062)
T ss_pred             hceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce-EEEEecCCeEEEEEeeccCccccccchhhccc
Confidence            555555554 6788899888888777776666666666334444444 888999999999964431              


Q ss_pred             --eEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC---
Q 002782          432 --CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---  505 (882)
Q Consensus       432 --~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---  505 (882)
                        ....... ..+-.....+..|..++.++.--.+|.+.+|.+..+........         .....+..+.|.-.   
T Consensus       321 l~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s---------~~iel~~pf~f~~~~~~  391 (1062)
T KOG1912|consen  321 LGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS---------SSIELVLPFDFNLSTKL  391 (1062)
T ss_pred             cccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc---------ccccccccccccCceee
Confidence              1111110 11112222333444344455556778889999875421110000         00001111111111   


Q ss_pred             --CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEc-----------CCC-------CEEEEeeCCCcEEEEec
Q 002782          506 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS-----------PVD-------QVVITASGDKTIKIWSI  565 (882)
Q Consensus       506 --~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-----------~~~-------~~l~s~~~d~~i~iwd~  565 (882)
                        ...+..-+.||                 +|..+.++....           |.+       .++|.|...|+|.++|+
T Consensus       392 v~k~~l~~LS~dg-----------------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv  454 (1062)
T KOG1912|consen  392 VGKTSLISLSDDG-----------------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV  454 (1062)
T ss_pred             hhhccccchhhcC-----------------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence              11222333343                 122222222211           212       37889999999999999


Q ss_pred             CCCceeeEeecCcCCEEEEEEEeCCCEEEE---------eecCCeEEEEEcCCCeeEE--Eec-cCCCceEEEEEcCCCC
Q 002782          566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVS---------CGADGLVKLWTVRTGECIA--TYD-KHEDKIWALAVGKKTE  633 (882)
Q Consensus       566 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s---------~~~dg~i~iwd~~~~~~~~--~~~-~h~~~v~~l~~s~~~~  633 (882)
                      .++...+.|..|...|.++.|.....++-.         ++.-+.+.+-|+++|....  -++ ..+.+|..+..|..|+
T Consensus       455 st~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~  534 (1062)
T KOG1912|consen  455 STNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGR  534 (1062)
T ss_pred             cchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCc
Confidence            999999999999999999999866544322         2223457888999986443  223 3458899999999999


Q ss_pred             EEEEEeCCCCEEEEECCCH
Q 002782          634 MFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       634 ~l~s~~~dg~i~iw~~~~~  652 (882)
                      ||+..-.|.-+.+||+.+-
T Consensus       535 yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  535 YLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             eEEEEecccchHHHhhccc
Confidence            9999999999999998554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.6e-16  Score=159.77  Aligned_cols=166  Identities=23%  Similarity=0.432  Sum_probs=136.1

Q ss_pred             eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 002782           52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLV  128 (882)
Q Consensus        52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~fs~--~~~~lasg~~dg~v~v  128 (882)
                      +.+.|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..++++.+ .||.+.|.++.|-|  ++..+++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45678999999999999999999999999999999999988888887 57999999999999  5568899999999999


Q ss_pred             EECCC----------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe-E------EEEe---cCcc
Q 002782          129 WDVDG----------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-C------VATL---DKHF  188 (882)
Q Consensus       129 wd~~~----------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~-~------~~~l---~~h~  188 (882)
                      +|+..          ...++.+..|...|..++-.|++. ..+.+++.||+|+-+|+.... |      ...+   ....
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99974          234556678999999999998863 569999999999999997632 1      1111   1122


Q ss_pred             cceEEEEEccCC-CEEEEEeCCCeEEEEecC
Q 002782          189 SRVTSMAITSDG-STLISAGRDKVVNLWDLR  218 (882)
Q Consensus       189 ~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~  218 (882)
                      -...++.++|.. .+|+.|+.|--.++||.+
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            356788899865 578889999999999953

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=2.5e-14  Score=133.13  Aligned_cols=291  Identities=18%  Similarity=0.268  Sum_probs=204.0

Q ss_pred             eeEEEeecCCCCEEEEEEcC---CCCEEEEEeC----CCcEEEEEC--CCCeEEEEe-ecCCCcEEEEEEecCCCc---c
Q 002782           93 KCLRSWKGHDGPAIGMACHP---SGGLLATAGA----DRKVLVWDV--DGGFCTHYF-KGHKGVVSSILFHPDTDK---S  159 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~---~~~~lasg~~----dg~v~vwd~--~~~~~~~~~-~~h~~~V~~l~f~~~~~~---~  159 (882)
                      +.+..+..+ -++.++.|+.   ...+||.|+.    .+.|.|-.+  ++++.+..- ..|..+++.+.|.|+...   .
T Consensus        36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence            444555543 6788888884   3347888872    355655544  455544322 258999999999998631   2


Q ss_pred             EEEEEeCCCcEEEEECCC--Ce--EEEEe-----cCcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782          160 LLFSGSDDATVRVWDLLA--KK--CVATL-----DKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY  229 (882)
Q Consensus       160 ~l~sgs~dg~I~vwd~~~--~~--~~~~l-----~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  229 (882)
                      +|++. . ..+|+|.+..  .+  +...+     ..+.++++++.|+. +-+++.+++-|-+..+||+.++.        
T Consensus       115 lLATs-~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--------  184 (364)
T KOG0290|consen  115 LLATS-S-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--------  184 (364)
T ss_pred             hhhcc-c-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc--------
Confidence            34443 3 3599999873  22  11112     23456899999986 56788889999999999987541        


Q ss_pred             ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeE
Q 002782          230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA  309 (882)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (882)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (364)
T KOG0290|consen  185 --------------------------------------------------------------------------------  184 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee
Q 002782          310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS  389 (882)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~  389 (882)
                                                      ......++..|..+|.+++|.....+.+++.+.||.+++||+......
T Consensus       185 --------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS  232 (364)
T KOG0290|consen  185 --------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS  232 (364)
T ss_pred             --------------------------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence                                            001123556788999999999988899999999999999999877655


Q ss_pred             eeeeC---CCcceEEeeeeeecCCCEEEEEeecC-CeEEEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCC
Q 002782          390 YVLAG---HSEIVLCLDTCALSSGKILIVTGSKD-NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH  464 (882)
Q Consensus       390 ~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg  464 (882)
                      ..+..   ...+...++  +.+.+..++++-..| ..|.|.|++. ...+..+.+|.+.|.+++|.|.....+++++.|.
T Consensus       233 TIIYE~p~~~~pLlRLs--wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLS--WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             eEEecCCCCCCcceeec--cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            44432   244566666  666666657765544 5788999886 4577889999999999999999988999999999


Q ss_pred             eEEEEecCCCCC-CCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcC
Q 002782          465 TIKVWSFDGLSD-DAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ  514 (882)
Q Consensus       465 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~  514 (882)
                      .+-+||+..... ....     +. .....+..|+.+.|++ .+..++.+..
T Consensus       311 qaliWDl~q~~~~~~~d-----Pi-lay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  311 QALIWDLQQMPRENGED-----PI-LAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eEEEEecccccccCCCC-----ch-hhhhccceeeeeeecccCCCEEEEEec
Confidence            999999987643 1111     11 1122567899999996 5678887764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.2e-13  Score=140.64  Aligned_cols=378  Identities=19%  Similarity=0.237  Sum_probs=230.7

Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCC---CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782           33 FIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA  109 (882)
Q Consensus        33 ~la~~~~~~I~i~d~~~~~~~~~l~~~---~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~  109 (882)
                      .+++-+...+.+|...........-.+   ..+....++|++|+++|.+. +..+.|++..++..+.+....  .+.++.
T Consensus         4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~   80 (566)
T KOG2315|consen    4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLL   80 (566)
T ss_pred             eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeee
Confidence            345555667888887654433322222   44578899999999888765 468999999998655444432  899999


Q ss_pred             EcCCCCEEEEEe-----C-----CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782          110 CHPSGGLLATAG-----A-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK  179 (882)
Q Consensus       110 fs~~~~~lasg~-----~-----dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~  179 (882)
                      |||-|.+|.+--     .     .-.+.+|+++++.....+......-++..|++|..   +++--..+.+.+|++.+.+
T Consensus        81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~  157 (566)
T KOG2315|consen   81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFK  157 (566)
T ss_pred             ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh---hhhhhhcceEEEEecCCcc
Confidence            999999998731     1     24578999999665555543333337899999865   5555556789999988743


Q ss_pred             EEEEecCcccceEEEEEccCCC--EEEE-----EeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccch
Q 002782          180 CVATLDKHFSRVTSMAITSDGS--TLIS-----AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN  252 (882)
Q Consensus       180 ~~~~l~~h~~~v~~l~~s~~~~--~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (882)
                      .+ .-.-|...|+.+.+||.+.  .+++     .|.-+.|++|..........+...      .|               
T Consensus       158 ~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k------sF---------------  215 (566)
T KOG2315|consen  158 TI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK------SF---------------  215 (566)
T ss_pred             ce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc------cc---------------
Confidence            22 2233667889999998743  2222     233345555544311100000000      00               


Q ss_pred             hhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEE
Q 002782          253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT  332 (882)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~  332 (882)
                                                                                           .-.|.      
T Consensus       216 ---------------------------------------------------------------------Fkadk------  220 (566)
T KOG2315|consen  216 ---------------------------------------------------------------------FKADK------  220 (566)
T ss_pred             ---------------------------------------------------------------------cccce------
Confidence                                                                                 00000      


Q ss_pred             ecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE
Q 002782          333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI  412 (882)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  412 (882)
                                              ..+.|...+..+|+.++.       |                       +...+. 
T Consensus       221 ------------------------vqm~WN~~gt~LLvLast-------d-----------------------VDktn~-  245 (566)
T KOG2315|consen  221 ------------------------VQMKWNKLGTALLVLAST-------D-----------------------VDKTNA-  245 (566)
T ss_pred             ------------------------eEEEeccCCceEEEEEEE-------e-----------------------ecCCCc-
Confidence                                    111111111112222111       0                       111111 


Q ss_pred             EEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEe-eCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                         +-....++++.+++...+ ..--...++|.++.|++++..+.++- -.--++.++|++..             ....
T Consensus       246 ---SYYGEq~Lyll~t~g~s~-~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-------------~v~d  308 (566)
T KOG2315|consen  246 ---SYYGEQTLYLLATQGESV-SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-------------PVFD  308 (566)
T ss_pred             ---cccccceEEEEEecCceE-EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------------EeEe
Confidence               111233555666552222 22233578999999999998765544 45678889988743             2333


Q ss_pred             hcCCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC------CCcEEE
Q 002782          492 AHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKI  562 (882)
Q Consensus       492 ~~~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d~~i~i  562 (882)
                      -..++-+++-|+|.|++++.++-+   |.+-+||+.+.+++..+...  .-+-+.|+|||++++|+..      |+.++|
T Consensus       309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki  386 (566)
T KOG2315|consen  309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKI  386 (566)
T ss_pred             CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence            345677899999999999987754   78999999998888887753  3456899999999999876      678999


Q ss_pred             EecCCCceeeEeecCcCCEEEEEEEeC
Q 002782          563 WSISDGSCLKTFEGHTSSVLRASFLTR  589 (882)
Q Consensus       563 wd~~~~~~~~~~~~h~~~v~~~~~s~~  589 (882)
                      |+. +|..+....-. .....+.|-|.
T Consensus       387 why-tG~~l~~~~f~-sEL~qv~W~P~  411 (566)
T KOG2315|consen  387 WHY-TGSLLHEKMFK-SELLQVEWRPF  411 (566)
T ss_pred             EEe-cCceeehhhhh-HhHhheeeeec
Confidence            997 56555432211 15667778764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=1.6e-13  Score=144.16  Aligned_cols=324  Identities=15%  Similarity=0.084  Sum_probs=203.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecC
Q 002782          160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP  239 (882)
Q Consensus       160 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  239 (882)
                      ++++-..+|.|.+.|..+.+.+..+......-..+.|+|||++++++++||.|.++|+.+.+.+.+++.......+.+  
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~--   85 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV--   85 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE--
Confidence            456667889999999999999999976655455678999999999999999999999999887776655443333333  


Q ss_pred             CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782          240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL  319 (882)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  319 (882)
                                                                                                      
T Consensus        86 --------------------------------------------------------------------------------   85 (369)
T PF02239_consen   86 --------------------------------------------------------------------------------   85 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE-EcCCcEEEEeCCCceeeeeeeCC---
Q 002782          320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLSSMSCSYVLAGH---  395 (882)
Q Consensus       320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~---  395 (882)
                                                                ++ ++++++++ ...+.+.++|..+.+.+..+...   
T Consensus        86 ------------------------------------------s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   86 ------------------------------------------SP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             ---------------------------------------------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             ------------------------------------------cC-CCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence                                                      22 33344433 34677888888887777766533   


Q ss_pred             ----CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe-eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782          396 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  470 (882)
Q Consensus       396 ----~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd  470 (882)
                          ...+..+.  .++....++++--+.+.|.+.|+.....+. .............|+|+++.++++...+..|-++|
T Consensus       123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence                23445554  667777645555556888888987654332 22233455677899999987777777788999999


Q ss_pred             cCCCCCCCCCcccccchhhhhhcCCCeeEEE-------E--cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782          471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLA-------V--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS  541 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~--s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  541 (882)
                      ..+......      ...-...|..+...+-       |  ...+...++.-....+.+||..+.+.+..+.....+ .-
T Consensus       201 ~~~~k~v~~------i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF  273 (369)
T PF02239_consen  201 TKTGKLVAL------IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF  273 (369)
T ss_dssp             TTTTEEEEE------EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred             eccceEEEE------eeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence            775421100      0000112222222221       1  222333322223345678999999999999987777 78


Q ss_pred             EEEcCCCCEEEEe----eCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEEEEeecC--CeEEEEEcCCCeeEE
Q 002782          542 VEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIA  614 (882)
Q Consensus       542 l~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d--g~i~iwd~~~~~~~~  614 (882)
                      +..+|+++++.+.    ...++|.++|..+.+.+.++.... ..+..+.|+++|+++..+..+  |.|.+||.++.+.+.
T Consensus       274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence            8889999999998    455899999999998888775332 358899999999987555443  379999999999998


Q ss_pred             Eec
Q 002782          615 TYD  617 (882)
Q Consensus       615 ~~~  617 (882)
                      .+.
T Consensus       354 ~i~  356 (369)
T PF02239_consen  354 RIP  356 (369)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=9.4e-14  Score=147.17  Aligned_cols=244  Identities=13%  Similarity=0.200  Sum_probs=155.9

Q ss_pred             eEEEEEeCCCCcEEEEE-EcCCcEEEEeCC-Ccee--eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-
Q 002782          356 ILDLKFLGEEEQYLAVA-TNIEQVQVYDLS-SMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-  430 (882)
Q Consensus       356 i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-  430 (882)
                      ...+.++| ++++|+++ ..++.|.+|++. ++..  ..... ..+....+.  ++|+++.++++...++.|.+|++.+ 
T Consensus        37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            34455555 55555544 446888888886 3322  11121 222344555  8899998666666789999999864 


Q ss_pred             ce---EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782          431 RC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  507 (882)
Q Consensus       431 ~~---~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  507 (882)
                      +.   .+.... +.....+++++|+++.++++...++.|.+||+..........    ..............++|+|+|+
T Consensus       113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----~~~~~~~~g~~p~~~~~~pdg~  187 (330)
T PRK11028        113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----PAEVTTVEGAGPRHMVFHPNQQ  187 (330)
T ss_pred             CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC----CCceecCCCCCCceEEECCCCC
Confidence            22   222222 223466788999998666777788999999997532100000    0000011234467899999999


Q ss_pred             EEEEEcC-CCcEEEEeCCC--c--eeEEEEecc------cCceEEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeEee
Q 002782          508 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGH------KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE  575 (882)
Q Consensus       508 ~la~~s~-dg~i~iwd~~~--~--~~~~~~~~h------~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~  575 (882)
                      +++++.. +++|.+|++..  +  +.+..+..+      ......+.|+|++++++++.. ++.|.+|++.......++.
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~  267 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE  267 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence            9988776 89999999973  2  333343322      112346889999999998854 7899999996543222222


Q ss_pred             cCc---CCEEEEEEEeCCCEEEEeec-CCeEEEEEcC
Q 002782          576 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR  608 (882)
Q Consensus       576 ~h~---~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~  608 (882)
                      ++.   .....+.|+|+|++|+++.. ++.|.+|+++
T Consensus       268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            221   24457899999999988776 8899999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=2.1e-14  Score=138.56  Aligned_cols=229  Identities=11%  Similarity=0.213  Sum_probs=167.9

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMN  483 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~  483 (882)
                      +..+.. ++..|+.||. ++|+................|--+-|+..   +++..+.+  +.+++.++....        
T Consensus        13 ~Nqd~~-~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~--------   79 (391)
T KOG2110|consen   13 FNQDST-LLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT--------   79 (391)
T ss_pred             ecccee-EEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc--------
Confidence            444444 3778888874 66766543332222233345666667654   45555444  448888876431        


Q ss_pred             ccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCCCEEEEee--CCC
Q 002782          484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDK  558 (882)
Q Consensus       484 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~--~d~  558 (882)
                         .........+|.++.+..  +.|++.-.+ .|+|||+.+.+.+.++..   +..++.++.+++.+.+|+.-+  ..|
T Consensus        80 ---~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G  153 (391)
T KOG2110|consen   80 ---TICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG  153 (391)
T ss_pred             ---eEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence               111112345677777754  455555544 499999999999888764   455677777777777888643  468


Q ss_pred             cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC-eEEEEEcCCCeeEEEeccC--CCceEEEEEcCCCCEE
Q 002782          559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMF  635 (882)
Q Consensus       559 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l  635 (882)
                      .|.+||+.+-+.+..+..|.+++.+++|+++|.+|||++..| .|||+.+.+|+.+.+|..-  .-.|.+++|+||+++|
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            899999999999999999999999999999999999999999 5799999999999999732  3568899999999999


Q ss_pred             EEEeCCCCEEEEECCCHH
Q 002782          636 ATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       636 ~s~~~dg~i~iw~~~~~~  653 (882)
                      ++.+..++|.+|++....
T Consensus       234 ~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEecCCCeEEEEEecccc
Confidence            999999999999988643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-14  Score=159.35  Aligned_cols=357  Identities=19%  Similarity=0.248  Sum_probs=217.5

Q ss_pred             EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC-------eEEEEecCcccceEEEEEccCCC
Q 002782          129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGS  201 (882)
Q Consensus       129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~-------~~~~~l~~h~~~v~~l~~s~~~~  201 (882)
                      |++ .|..+..+..|...|..++.+++. ..++++||.||+|++||+..-       ++..++....+.+..+.+.+.+.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            554 467788888999999999998764 357999999999999998531       23334444567888999999999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782          202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA  281 (882)
Q Consensus       202 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~  281 (882)
                      .++.++.||.|.+.+++.....+.....                                              +++   
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~----------------------------------------------~ri--- 1142 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQ----------------------------------------------VRI--- 1142 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeee----------------------------------------------eec---
Confidence            9999999999999988653111000000                                              000   


Q ss_pred             CCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEE-EE
Q 002782          282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD-LK  360 (882)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~  360 (882)
                                                      |+.                                 . ..+.+.+ -+
T Consensus      1143 --------------------------------~n~---------------------------------~-~~g~vv~m~a 1156 (1431)
T KOG1240|consen 1143 --------------------------------PNL---------------------------------K-KDGVVVSMHA 1156 (1431)
T ss_pred             --------------------------------ccc---------------------------------c-CCCceEEeec
Confidence                                            000                                 0 0011111 12


Q ss_pred             EeCCCCc-EEEEEEcCCcEEEEeCCCceeeeeee--CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee
Q 002782          361 FLGEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG  437 (882)
Q Consensus       361 ~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  437 (882)
                      |...... .++.++..+.|..||+........++  ...+.|+++.  ..|.+.+ +++|+..|.+.+||++-+.++...
T Consensus      1157 ~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~--idp~~~W-lviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1157 FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV--IDPWCNW-LVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE--ecCCceE-EEEecCCceEEEEEeecCceeecc
Confidence            2222333 77888888999999998776655443  4557788887  8888887 999999999999999988777664


Q ss_pred             e-cccccEEEEEEccCCC--cEEEEee--CCCeEEEEecCCCCCCCC-----Ccccccchhhh----hhcCCCeeEEEEc
Q 002782          438 T-GHMGAVGAVAFSKKLQ--NFLVSGS--SDHTIKVWSFDGLSDDAE-----QPMNLKAKAVV----AAHGKDINSLAVA  503 (882)
Q Consensus       438 ~-~~~~~v~~v~~s~~~~--~~l~s~~--~dg~i~~wd~~~~~~~~~-----~~~~~~~~~~~----~~~~~~i~~~~~s  503 (882)
                      . .+..++..+..+|-.+  ...++++  ..+.|.+|++.++.....     ....+......    ..+.-......+.
T Consensus      1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred             cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence            4 4557788887776544  3444444  578899999987632110     00000000000    1222233344454


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCceeE-EEEecccCceEEEEEcCCCCEEEEeeCCCcEEE-EecCCC-----ceee----
Q 002782          504 PNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI-WSISDG-----SCLK----  572 (882)
Q Consensus       504 ~~~~~la~~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i-wd~~~~-----~~~~----  572 (882)
                      ..+..+.+|+.|..|+.||....... ....+..........+. +.-++.++.--...+ .....+     ....    
T Consensus      1314 ~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~-~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~ 1392 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY-DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRP 1392 (1431)
T ss_pred             cCCceeeecCCccceeeccCCCcccccccccCccccccccchhc-cccccCCCccchhhhhhhhhcCchhhccccccccc
Confidence            55668899999999999998765443 22222222233333322 122222221100000 000000     0011    


Q ss_pred             ----EeecCcCCEEEEEEEeC-CCEEEEeecCCeEEEEE
Q 002782          573 ----TFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWT  606 (882)
Q Consensus       573 ----~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd  606 (882)
                          .-..|..+|+.+++... ..+|++++.||.|+||.
T Consensus      1393 ~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1393 GPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                11258889999988654 45889999999999993

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.8e-14  Score=135.35  Aligned_cols=302  Identities=21%  Similarity=0.218  Sum_probs=187.6

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCC-CccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----ee--
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGG-SDTITALALSPDD-KLLFSSGHSREIRVWDLSTL----KC--   94 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~-~~~I~~l~~spd~-~~las~~~dg~i~iwd~~~~----~~--   94 (882)
                      -+||++--.-+|++..+ .|+|||-.. .....++.. ...|+|++|-|.+ +-|++|.. +-|.+|.....    ..  
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~  180 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR  180 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc
Confidence            47777754445555544 899999766 555556543 4579999999965 56777776 46999987421    11  


Q ss_pred             --------EEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782           95 --------LRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus        95 --------~~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs  165 (882)
                              +..-++| .+|++|.|.+||..|++++ .|..|.|||++++..+.......+.++-+.|+||++.  |++++
T Consensus       181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~--lfaAt  257 (445)
T KOG2139|consen  181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV--LFAAT  257 (445)
T ss_pred             cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE--EEEec
Confidence                    1122345 7999999999999999988 5688999999999877666556788999999999876  99999


Q ss_pred             CCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782          166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD  245 (882)
Q Consensus       166 ~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (882)
                      -|+..++|+..............+.|...+|+|+|++|+.++. |.=++|.+.-............+..+..        
T Consensus       258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll--------  328 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL--------  328 (445)
T ss_pred             ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee--------
Confidence            9999999965443322223333458999999999998776653 3334454432111111100111111111        


Q ss_pred             cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782          246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD  325 (882)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (882)
                                                      +-|+..-          .......-...+...+++.|.+.++++....
T Consensus       329 --------------------------------iaDL~e~----------ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  329 --------------------------------IADLQEV----------TICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             --------------------------------eccchhh----------hhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence                                            1111000          0000001112556778889999999887766


Q ss_pred             Ce--------EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC
Q 002782          326 QQ--------LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL  383 (882)
Q Consensus       326 ~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~  383 (882)
                      +.        +..|+....  ...++.......+......+..+.-.++.+|.++-+.|.+.-|++
T Consensus       367 ~~~v~~~k~~i~~fdtr~s--p~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  367 QSFVLLCKLHISRFDTRKS--PPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             Cchhhhhhhhhhhhccccc--CceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            55        333443322  222333334444444444455555567778888888788877765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.66  E-value=3.6e-13  Score=147.15  Aligned_cols=225  Identities=17%  Similarity=0.263  Sum_probs=167.4

Q ss_pred             CEEEEEeCCeEEEEEcCCCceeeee------cCC----------CccEEEEEE-------------------------cC
Q 002782           32 SFIACACGESINIVDLSNASIKSTI------EGG----------SDTITALAL-------------------------SP   70 (882)
Q Consensus        32 ~~la~~~~~~I~i~d~~~~~~~~~l------~~~----------~~~I~~l~~-------------------------sp   70 (882)
                      .||.++.+..|.+||+..+..+..+      +.|          ..-|++..+                         .-
T Consensus        18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~   97 (967)
T KOG0974|consen   18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE   97 (967)
T ss_pred             ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence            7899999999999999887644322      223          112333333                         23


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 002782           71 DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG----PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV  146 (882)
Q Consensus        71 d~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~----~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~  146 (882)
                      +.+.++.++.++.+.+||+..+...........    ...-+.++++.-++++|+.-+.|.+|++.....-..+.||.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            457788888889999999988877766553221    2233456778889999999999999999754444478999999


Q ss_pred             EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE-EecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782          147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  225 (882)
Q Consensus       147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~  225 (882)
                      |..+.|+.|+.+  +++.|+|.++++|++++++... +.-+|+..|+.++|.|.  .+++++.|-+.++|+....+.. .
T Consensus       178 iF~i~~s~dg~~--i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~  252 (967)
T KOG0974|consen  178 IFSIVTSLDGRY--IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-V  252 (967)
T ss_pred             eEEEEEccCCcE--EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-h
Confidence            999999998766  9999999999999999998776 77899999999999998  9999999999999966543322 1


Q ss_pred             ecC--cceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc
Q 002782          226 VPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA  284 (882)
Q Consensus       226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~  284 (882)
                      +..  ...+..+...+                       .....+++|.||.+++|+....
T Consensus       253 y~~h~g~~iw~~~~~~-----------------------~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  253 YDEHSGKGIWKIAVPI-----------------------GVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhhhhhcceeEEEEcC-----------------------CceEEEeeccCcchhhhhhhcc
Confidence            111  11222222221                       2357899999999999998654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.7e-15  Score=159.33  Aligned_cols=235  Identities=16%  Similarity=0.191  Sum_probs=164.7

Q ss_pred             CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec---CCeEEEEeCCCceE--EeeeecccccEEEEEE
Q 002782          375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCC--VGVGTGHMGAVGAVAF  449 (882)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~  449 (882)
                      +..|.+||..... ...+..|...+....  ++|+|+. ++..+.   +..|++||+.++..  +..+.+|   ...++|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence            3689999986655 445677777888888  9999998 454443   24799999988754  3323333   346899


Q ss_pred             ccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc-CCCcEEEEeCCCc-e
Q 002782          450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-V  527 (882)
Q Consensus       450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s-~dg~i~iwd~~~~-~  527 (882)
                      +|+|+.++++.+.+|.+.+|.++....         ....+..+...+.+..|+|||+.|+.++ .++...||+++.. .
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            999985555556788777765442211         1112233555678899999999777554 5778888876432 2


Q ss_pred             eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      ....+ ++..  ....|+|||+.|+.++.++ +.+||+.++........+  ....+.|+|||++|+.++.+|.+.+|.+
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            22222 3433  4678999999999888765 666999888764333222  2345789999999999999998888876


Q ss_pred             --CCCeeEEEeccCCCceEEEEEcCC
Q 002782          608 --RTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       608 --~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                        .+|..+..+..|.+.+...+|+|-
T Consensus       401 ~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        401 VSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EECCCCceEEccCCCCCCCCcccCCC
Confidence              368888899888888999999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.7e-15  Score=147.52  Aligned_cols=195  Identities=17%  Similarity=0.222  Sum_probs=156.5

Q ss_pred             EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782          445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       445 ~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~  524 (882)
                      .+++|+.+|. .+++++.||++++|+++...          .......|...|.++.|||||++|++-+.| ..+||+..
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~----------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML----------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcch----------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence            7889999977 79999999999999987542          455567899999999999999999999999 89999999


Q ss_pred             CceeEEEEec--ccCceEEEEEcCCC-----CEEEEeeCCCcEEEEecCCCce-----eeEeecCcCCEEEEEEEeCCCE
Q 002782          525 DLVSVVTFRG--HKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSC-----LKTFEGHTSSVLRASFLTRGAQ  592 (882)
Q Consensus       525 ~~~~~~~~~~--h~~~v~~l~~s~~~-----~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~s~~g~~  592 (882)
                      ++..+.....  -......+.|+.|+     .+.+....-+.|+.|++....-     .++...-...|.+++.+++|++
T Consensus       216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence            9966665542  23346778888877     3333444556677777643321     1222223458999999999999


Q ss_pred             EEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          593 IVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       593 l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      ++.|+.||.|-|++..+-++++-.+ .|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus       296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999999988877664 7999999999999999999999999999887664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=6.8e-15  Score=148.24  Aligned_cols=221  Identities=15%  Similarity=0.212  Sum_probs=166.2

Q ss_pred             cCCCEEEEEeecCCeEEEEeCCCceEEeee----ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccc
Q 002782          408 SSGKILIVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN  483 (882)
Q Consensus       408 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  483 (882)
                      +.+-. +..|-..|.+.+.|....+....+    .-....++++.|-|.+...++.+-.+|.+.+||.......      
T Consensus       183 ~~g~d-llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------  255 (636)
T KOG2394|consen  183 PKGLD-LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------  255 (636)
T ss_pred             CCCcc-eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence            45555 778888899999887653222111    1234789999999988888999999999999986422100      


Q ss_pred             ccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782          484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW  563 (882)
Q Consensus       484 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw  563 (882)
                                  .-.+-...+++..++....-+.      .+..++..+.-....|...+|+|||++||+.+.||.+|||
T Consensus       256 ------------t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF  317 (636)
T KOG2394|consen  256 ------------TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF  317 (636)
T ss_pred             ------------CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence                        0011122235555554322111      1113444444455689999999999999999999999999


Q ss_pred             ecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC-------------
Q 002782          564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-------------  630 (882)
Q Consensus       564 d~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-------------  630 (882)
                      |..+.+++..+...-+..+|++|||||+||++|++|..|.||.+...+.+..-++|.+.|..++|.|             
T Consensus       318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~  397 (636)
T KOG2394|consen  318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG  397 (636)
T ss_pred             eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence            9999988888877788999999999999999999999999999999999999999999999999972             


Q ss_pred             ------------------C----C-------------CEEEEEeCCCCEEEEECCCHH
Q 002782          631 ------------------K----T-------------EMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       631 ------------------~----~-------------~~l~s~~~dg~i~iw~~~~~~  653 (882)
                                        +    +             -.|.+.|.|-.+.+||+....
T Consensus       398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                              0    1             147788999999999987543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.65  E-value=4.9e-09  Score=122.64  Aligned_cols=446  Identities=17%  Similarity=0.131  Sum_probs=256.3

Q ss_pred             CceEEccCCCEEEEEeCC--e---EEEEEcCCCc---eeeeec-----CCCccEEEEEEcCCCCEEEEEeCCCcEEEE--
Q 002782           23 GPLVVSSDGSFIACACGE--S---INIVDLSNAS---IKSTIE-----GGSDTITALALSPDDKLLFSSGHSREIRVW--   87 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~--~---I~i~d~~~~~---~~~~l~-----~~~~~I~~l~~spd~~~las~~~dg~i~iw--   87 (882)
                      .+.++.++...++++.+.  .   |.+-......   .+..+.     .....|.++.+-++..-|+.+..+|.|.+.  
T Consensus        25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~  104 (928)
T PF04762_consen   25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVRE  104 (928)
T ss_pred             ceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEc
Confidence            356777777666665553  1   2333222221   333333     235689999999999999999999999999  


Q ss_pred             --ECCCC--eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C---------C----------eEEEEe
Q 002782           88 --DLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD----G---------G----------FCTHYF  140 (882)
Q Consensus        88 --d~~~~--~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~----~---------~----------~~~~~~  140 (882)
                        +..+.  +.+..   -...|.+++||||+..||.++.++++.+-+-.    .         |          +.-..|
T Consensus       105 ~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF  181 (928)
T PF04762_consen  105 DPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF  181 (928)
T ss_pred             cCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence              54443  33333   35889999999999999999988888875321    0         0          100111


Q ss_pred             ec------------------------CCCcEEEEEEecCCCccEEEEEeC------CCcEEEEECCCCeEEEEecCcccc
Q 002782          141 KG------------------------HKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCVATLDKHFSR  190 (882)
Q Consensus       141 ~~------------------------h~~~V~~l~f~~~~~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~h~~~  190 (882)
                      +|                        +...-..++|-.||..  +|+.+.      -..++||+-+ |....+...-.+-
T Consensus       182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y--FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL  258 (928)
T PF04762_consen  182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY--FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL  258 (928)
T ss_pred             CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE--EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence            11                        1223456778887765  776654      2579999954 7666555555555


Q ss_pred             eEEEEEccCCCEEEEEeC---CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEE
Q 002782          191 VTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  267 (882)
Q Consensus       191 v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (882)
                      -.+++|.|.|+++++..+   ...|.+|.-...+. ..+.                                        
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~----------------------------------------  297 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFT----------------------------------------  297 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEe----------------------------------------
Confidence            668899999999988764   22333333221110 0000                                        


Q ss_pred             EEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeee
Q 002782          268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  347 (882)
Q Consensus       268 ~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  347 (882)
                                                    .........+..+.|++++.-|++...+. +.+|....-.     .-+..
T Consensus       298 ------------------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-----WYLKq  341 (928)
T PF04762_consen  298 ------------------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-----WYLKQ  341 (928)
T ss_pred             ------------------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-----EEEEE
Confidence                                          00011223456777877777777766444 8888776431     11111


Q ss_pred             eec-ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          348 RLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       348 ~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      .+. .....+..+.|.+.+...|.+.+.+|.+..++..-....    +..         ..|++.. .+..-+...+.+-
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~---------~~~~D~g-~vaVIDG~~lllT  407 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPG---------SSPNDNG-TVAVIDGNKLLLT  407 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCC---------CCccCce-EEEEEeCCeEEEe
Confidence            111 222334558999998999999998888877664211100    000         1111222 1111122244444


Q ss_pred             eCCCceE-----EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh--------hhhhc
Q 002782          427 DSESRCC-----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA--------VVAAH  493 (882)
Q Consensus       427 d~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--------~~~~~  493 (882)
                      .+.....     ...+ .-..+|.+++|++++. .+++-..||.+.+|...................        .....
T Consensus       408 pf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (928)
T PF04762_consen  408 PFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP  485 (928)
T ss_pred             cccccCCCchHhceEE-cCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence            4443211     1112 2346899999999876 488889999999998765432210000000000        11122


Q ss_pred             CCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCce---eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782          494 GKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  567 (882)
                      ...+..++|..+..+++....+   ..+.++++....   .......-...+..+...++...++.-..+|.+...+...
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence            3457788888888777766654   568888774332   2333333445566666666655566667788888666543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=4.8e-16  Score=153.66  Aligned_cols=199  Identities=19%  Similarity=0.275  Sum_probs=176.3

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      .+.++.+|++|+.++.. .|..+|..++.+...+.. .+.|..+.|-.+.+++|++-. ..++||| ..|..++-++.| 
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk~~-  209 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLKRH-  209 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehhhc-
Confidence            48899999999988765 899999999998887764 568899999999999998865 5899999 567778888765 


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA  182 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~  182 (882)
                      .+|..+.|-|..-+|++++..|.+.--|+.+|+.+..+....+.+..++-+|-.  .++-+|...|+|.+|...+.+++.
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N--aVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN--AVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc--ceEEEcCCCceEEecCCCCcchHH
Confidence            789999999999999999999999999999999999999889999999998853  458889999999999999999999


Q ss_pred             EecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecC
Q 002782          183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT  228 (882)
Q Consensus       183 ~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  228 (882)
                      .+-.|.++|.++++.++|.+++|.|.|..++|||++....+.++..
T Consensus       288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            9999999999999999999999999999999999998765554443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.64  E-value=7.6e-14  Score=129.99  Aligned_cols=269  Identities=16%  Similarity=0.210  Sum_probs=189.0

Q ss_pred             CCcEEEEEEc----CCcEEEEeC--CCceeeeee-eCCCcceEEeeeeeecCCC----EEEEEeecCCeEEEEeCCC--c
Q 002782          365 EEQYLAVATN----IEQVQVYDL--SSMSCSYVL-AGHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSES--R  431 (882)
Q Consensus       365 ~~~~l~~~~~----~~~i~i~d~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~--~  431 (882)
                      ...++++|+-    .+.|.+..+  .+++.+..- ..|.-+++.+.  |.|+..    .++++.  +..+|+|.+..  .
T Consensus        58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~--wiPd~~g~~pdlLATs--~D~LRlWri~~ee~  133 (364)
T KOG0290|consen   58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLM--WIPDSKGVYPDLLATS--SDFLRLWRIGDEES  133 (364)
T ss_pred             cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceE--ecCCccccCcchhhcc--cCeEEEEeccCcCC
Confidence            3445666543    244555443  333333221 25777788887  555542    235554  44799998773  2


Q ss_pred             eEE--e-----eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          432 CCV--G-----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       432 ~~~--~-----~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      ...  .     .-..+..++++..|..-..+++.+.+-|-+..+||+..+.       .......+.+|.+.|..++|..
T Consensus       134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~  206 (364)
T KOG0290|consen  134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLK  206 (364)
T ss_pred             ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEecc
Confidence            211  1     1224667999999998888899999999999999998751       2224556678999999999998


Q ss_pred             CC-cEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCC-CEEEEeeCC-CcEEEEecCCC-ceeeEeecC
Q 002782          505 ND-SLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVD-QVVITASGD-KTIKIWSISDG-SCLKTFEGH  577 (882)
Q Consensus       505 ~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~-~~l~s~~~d-~~i~iwd~~~~-~~~~~~~~h  577 (882)
                      .+ +.+|+.+.||.+++||++..+....+..   ...+...++|++.+ +++|+-..| ..|.|.|++.. ..+..+++|
T Consensus       207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H  286 (364)
T KOG0290|consen  207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH  286 (364)
T ss_pred             CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence            65 6889999999999999998765444432   24578889998855 567776554 46999999864 678899999


Q ss_pred             cCCEEEEEEEeC-CCEEEEeecCCeEEEEEcCCCe------eEEEeccCCCceEEEEEcCC-CCEEEEEeCCCCEEE
Q 002782          578 TSSVLRASFLTR-GAQIVSCGADGLVKLWTVRTGE------CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNL  646 (882)
Q Consensus       578 ~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i  646 (882)
                      .+.|+.++|.|. ...|.++|.|..+.+||+..--      ++..+. -.++|..+.|++. ..+++.+. +..+.+
T Consensus       287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999999999985 5689999999999999997532      222333 4678999999965 44565554 344444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.64  E-value=3.7e-13  Score=135.35  Aligned_cols=365  Identities=15%  Similarity=0.194  Sum_probs=228.5

Q ss_pred             ccccccccc-ccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------
Q 002782            9 SYGCEPVLQ-QFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------   81 (882)
Q Consensus         9 ~~~~~~~~~-~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------   81 (882)
                      +|.....++ .-+....+.+||.|.+|++.....|.+|+-..+..+..+..  ..|.-+.|||.++||.+-+..      
T Consensus        21 s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          21 SEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cccccccccccCcchhheeecCcchheehhhccceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChh
Confidence            344455555 44555679999999999999999999999888776666653  468999999999999986543      


Q ss_pred             ---------CcEEEEECCCCeeEEEeecCCCC--EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEE
Q 002782           82 ---------REIRVWDLSTLKCLRSWKGHDGP--AI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVS  148 (882)
Q Consensus        82 ---------g~i~iwd~~~~~~~~~~~~h~~~--V~-~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~  148 (882)
                               +.+.+||+.+|..+..+.+...+  .. -+.|+-+.+|+|-. ....+.|+++...-..+.+..- ...|.
T Consensus        99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~  177 (561)
T COG5354          99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGIL  177 (561)
T ss_pred             hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcccccee
Confidence                     35999999999999999987766  55 68899999888765 3466999997222211112111 35678


Q ss_pred             EEEEecCCCccEEEE-----EeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceee
Q 002782          149 SILFHPDTDKSLLFS-----GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK  223 (882)
Q Consensus       149 ~l~f~~~~~~~~l~s-----gs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~  223 (882)
                      ...|+|.+++..|+.     ++.++++++|.+..++.+.+-.--.-.=..+.|.+.|++|+.-..               
T Consensus       178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~---------------  242 (561)
T COG5354         178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM---------------  242 (561)
T ss_pred             eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE---------------
Confidence            888888765533332     234455566655443333221111111112223333322221100               


Q ss_pred             eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCc
Q 002782          224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS  303 (882)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  303 (882)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (561)
T COG5354         243 --------------------------------------------------------------------------------  242 (561)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC
Q 002782          304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL  383 (882)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~  383 (882)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (561)
T COG5354         243 --------------------------------------------------------------------------------  242 (561)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEE-eeC
Q 002782          384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSS  462 (882)
Q Consensus       384 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s-~~~  462 (882)
                                .|          + ..++.++    ....++|+++....+ .....-.++|...+|.|.+..+.+. |-.
T Consensus       243 ----------t~----------~-ksnKsyf----gesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~  296 (561)
T COG5354         243 ----------TH----------T-KSNKSYF----GESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYM  296 (561)
T ss_pred             ----------Ee----------e-eccccee----ccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEeccc
Confidence                      00          0 0000001    012334444432221 1222446788889998887765433 356


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCceeEE-EEecccCc
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRG  538 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~~~~-~~~~h~~~  538 (882)
                      +..+.++|++..             .........=+.+.|+|.++++++++-|   |.+-+||........ .+.+.  .
T Consensus       297 pa~~s~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n  361 (561)
T COG5354         297 PASVSVFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--N  361 (561)
T ss_pred             ccceeecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--C
Confidence            778888888753             1112223344678899999999997765   579999987765444 56543  3


Q ss_pred             eEEEEEcCCCCEEEEeeC------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC
Q 002782          539 IWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  600 (882)
Q Consensus       539 v~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg  600 (882)
                      ..-+.|+||++++.+...      |..|+|||+.....-        ..+.+.|.|.|++.-+.+.+.
T Consensus       362 ~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         362 TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence            455789999999988743      778999998543321        455688989888877776654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=2.2e-14  Score=135.56  Aligned_cols=203  Identities=21%  Similarity=0.250  Sum_probs=166.8

Q ss_pred             ccccccccCCceEEccCCCEEEEEeCC-eEEEEEcCCCc---eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782           14 PVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL   89 (882)
Q Consensus        14 ~~~~~~y~g~~va~s~dg~~la~~~~~-~I~i~d~~~~~---~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~   89 (882)
                      ..++|+|.   -||++|+..+|++..+ .|.||......   ..+++..|...|+++.|+|..+.|++++.|..-++|..
T Consensus         8 ~~~~pitc---hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    8 RLLEPITC---HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eccCceee---eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            34567776   9999999999999887 89999876554   67899999999999999999999999999999999998


Q ss_pred             -CCC--eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEeecCCCcEEEEEEecCCCccEEE
Q 002782           90 -STL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDTDKSLLF  162 (882)
Q Consensus        90 -~~~--~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~----~~~~~~h~~~V~~l~f~~~~~~~~l~  162 (882)
                       ..+  ++.-.+.-++..++++.|+|.++.+|+|+....|.||-.+...-    .+.-+.+.+.|+++.|+|+.  .+|+
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--VLla  162 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--VLLA  162 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--ceec
Confidence             333  45555666889999999999999999999999999998865532    22334678889999999964  5699


Q ss_pred             EEeCCCcEEEEECC-----C-------------CeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782          163 SGSDDATVRVWDLL-----A-------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       163 sgs~dg~I~vwd~~-----~-------------~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~  221 (882)
                      +|+.|+..+|+..-     +             |..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999999652     1             12223333456789999999999999999999999998877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=5.9e-13  Score=128.69  Aligned_cols=197  Identities=12%  Similarity=0.181  Sum_probs=146.8

Q ss_pred             eEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEeecCC
Q 002782           25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        25 va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~~~~~h~  102 (882)
                      +.|..|+..|..|..+...+|+.+.-............|.-+-||.  .++|..+.+  ..+++.+.+.+..+..+. -.
T Consensus        11 ~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp   87 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FP   87 (391)
T ss_pred             eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence            3388899999999999999999876655333333445677777874  456655443  459999999888888776 34


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCccEEEE--EeCCCcEEEEECCCCe
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLAKK  179 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~f~~~~~~~~l~s--gs~dg~I~vwd~~~~~  179 (882)
                      .+|.++.++.+  +|+++-.+. |.|||+.+.+.++++..- ..+---++++|+....+++-  ....|.|.+||+.+-+
T Consensus        88 t~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            78999988754  577765544 999999999999988754 22222344444433333443  3346999999999999


Q ss_pred             EEEEecCcccceEEEEEccCCCEEEEEeCCCe-EEEEecCCceeeeeec
Q 002782          180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVP  227 (882)
Q Consensus       180 ~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~  227 (882)
                      .+..+..|.+.+.+++|+++|.+|++++..|+ |||+.+.+++.+..+.
T Consensus       165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            99999999999999999999999999998885 6788887776665543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4e-15  Score=146.35  Aligned_cols=194  Identities=20%  Similarity=0.184  Sum_probs=155.7

Q ss_pred             CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-
Q 002782           23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-  100 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~-  100 (882)
                      ..+||++||..|++++.+ .++||+.++...+.....|...|.++.|||||++||+.+.| ..+||+..+|..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            389999999999999766 89999988888888888899999999999999999999999 999999999977776653 


Q ss_pred             -CCCCEEEEEEcCCC---CEE--EEEeCCCcEEEEECCCCeE-----EEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782          101 -HDGPAIGMACHPSG---GLL--ATAGADRKVLVWDVDGGFC-----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus       101 -h~~~V~~l~fs~~~---~~l--asg~~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~  169 (882)
                       .+.....+.|+.|+   .+.  +....-+.|+.||+.....     ......-...|++++.+++|+.  ++.|+.||.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~AlGT~dGs  304 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LALGTMDGS  304 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EEEeccCCc
Confidence             33466778898887   332  2333446677766632211     1111123457999999998765  999999999


Q ss_pred             EEEEECCCCeEEEEe-cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782          170 VRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       170 I~vwd~~~~~~~~~l-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~  219 (882)
                      |-+++..+.++++.. +.|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999998887766 67999999999999999999999999888877653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=7.6e-13  Score=125.38  Aligned_cols=278  Identities=19%  Similarity=0.257  Sum_probs=180.9

Q ss_pred             EEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC------CeEEEEeCCC
Q 002782          357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSES  430 (882)
Q Consensus       357 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~  430 (882)
                      ..++|.. +..-+++|.. .-.++|+.+..+.....+.+.+.+.-+. ... ..+.+.++|+.+      ..+.|||-..
T Consensus         9 lsvs~NQ-D~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve-MLf-R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    9 LSVSFNQ-DHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE-MLF-RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eEEEEcc-CCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh-Hhh-hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            3455554 5667777777 4588998876443322222222211111 112 223334445433      4799999777


Q ss_pred             ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782          431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  510 (882)
Q Consensus       431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la  510 (882)
                      .+++..+. ...+|.++.+.++   .+++. ..+.|.+|.+.....      ...... .....+..-+++-..+..+||
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k------~l~~~e-t~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK------LLHVIE-TRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh------heeeee-cccCCCceEeecCCCCceEEE
Confidence            77776654 5678999999987   34433 467899999874311      000111 111122233333333445555


Q ss_pred             E-EcCCCcEEEEeCCCcee--EEEEecccCceEEEEEcCCCCEEEEeeCCCc-EEEEecCCCceeeEeec--CcCCEEEE
Q 002782          511 T-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLRA  584 (882)
Q Consensus       511 ~-~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~--h~~~v~~~  584 (882)
                      . |-.-|.|.|-|+...+.  ...+..|...|.|++.+.+|..+||+|..|+ |||||..+|+.+..++.  ....|.++
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            4 44568999999987655  5778899999999999999999999999998 79999999999999874  34579999


Q ss_pred             EEEeCCCEEEEeecCCeEEEEEcCCCe---e---------------------EEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782          585 SFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGGS  640 (882)
Q Consensus       585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~---~---------------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~  640 (882)
                      +|||++.+|+.+|.-|++.|+.++...   .                     +..+.-..+...-++|..+.+.++..+.
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~  312 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICA  312 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEe
Confidence            999999999999999999999887532   1                     0111122334445566666566666777


Q ss_pred             CCCEEEEECC
Q 002782          641 DALVNLWHDS  650 (882)
Q Consensus       641 dg~i~iw~~~  650 (882)
                      ||...-+...
T Consensus       313 Dgsy~k~~f~  322 (346)
T KOG2111|consen  313 DGSYYKFKFD  322 (346)
T ss_pred             CCcEEEEEec
Confidence            7775544443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.62  E-value=1.2e-10  Score=116.10  Aligned_cols=177  Identities=13%  Similarity=0.085  Sum_probs=128.4

Q ss_pred             EeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC-eEEEEeCCCceEEeeeec
Q 002782          361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVRLWDSESRCCVGVGTG  439 (882)
Q Consensus       361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  439 (882)
                      |...++++++..+. |+..+.+...+-.+.  -+|.+.|.-..  ...+++. ++.|..|| .+-++|..+++.. .+..
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r--~~~~~e~-~vigt~dgD~l~iyd~~~~e~k-r~e~  399 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRR--IQVDPEG-DVIGTNDGDKLGIYDKDGGEVK-RIEK  399 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEE--EccCCcc-eEEeccCCceEEEEecCCceEE-EeeC
Confidence            34557888888887 777777765554332  24555566655  4455555 88899998 8999999988654 3456


Q ss_pred             ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC---
Q 002782          440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---  516 (882)
Q Consensus       440 ~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg---  516 (882)
                      .-+.|.++..+++|+ +++.+.....+.+.|+.++.          ....-....+-|+.++|+|+++++|.+--+|   
T Consensus       400 ~lg~I~av~vs~dGK-~~vvaNdr~el~vididngn----------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t  468 (668)
T COG4946         400 DLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGN----------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT  468 (668)
T ss_pred             CccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCC----------eeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence            778899999999988 67888888888888988763          2223334556799999999999999987776   


Q ss_pred             -cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782          517 -TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  556 (882)
Q Consensus       517 -~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  556 (882)
                       .|+++|+.+++...... ....-.+-+|.||+++|.--+.
T Consensus       469 q~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         469 QSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             eeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence             58999999887655433 3333455678889998775543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3e-14  Score=155.48  Aligned_cols=211  Identities=14%  Similarity=0.083  Sum_probs=147.7

Q ss_pred             CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC---CeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782          420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  496 (882)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (882)
                      +..|.+||..... ...+..|...+...+|+|+|+. ++.++.+   ..|.+||+.++..        .......   ..
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~---g~  249 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGAR--------KVVASFR---GH  249 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCce--------EEEecCC---Cc
Confidence            4689999987655 4456677888999999999985 5554432   4799999875421        0111112   22


Q ss_pred             eeEEEEcCCCcEEEEEc-CCCcEEEE--eCCCceeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEEecCCC-cee
Q 002782          497 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL  571 (882)
Q Consensus       497 i~~~~~s~~~~~la~~s-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~-~~~  571 (882)
                      ...++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+.+..|+|||+.|+.++ .++...||++... ...
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999888764 67765554  666554 445666777788999999999777554 5788888876532 222


Q ss_pred             eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      ..+ ++..  ....|+|||++|+.++.++ +.+||+.+++.......+  ...++.|+|||++|+.++.++...+|.+.
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            223 3433  4578999999998888766 555999988765333322  23567899999999999999998888764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=1.3e-14  Score=146.30  Aligned_cols=193  Identities=22%  Similarity=0.353  Sum_probs=150.7

Q ss_pred             ccCCCEEEEEe-CCeEEEEEcCCCceeeeecC----CCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC----------
Q 002782           28 SSDGSFIACAC-GESINIVDLSNASIKSTIEG----GSDTITALALSPDDK-LLFSSGHSREIRVWDLST----------   91 (882)
Q Consensus        28 s~dg~~la~~~-~~~I~i~d~~~~~~~~~l~~----~~~~I~~l~~spd~~-~las~~~dg~i~iwd~~~----------   91 (882)
                      .|.|--|..+. .+.|.+.|....+..+.+..    ....|+|+.|-|.+. .+.++..+|.++++|..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            35554444444 45888888766333222221    346899999999664 445567789999997631          


Q ss_pred             ------------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe
Q 002782           92 ------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH  153 (882)
Q Consensus        92 ------------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~  153 (882)
                                        ..++..|.-..++|...+|+|||++||+.+.||.++|+|..+.+++..++..-+...|++|+
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                              12233343445688999999999999999999999999999999888888888999999999


Q ss_pred             cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccC----------------------------------
Q 002782          154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD----------------------------------  199 (882)
Q Consensus       154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~----------------------------------  199 (882)
                      ||+++  +++|+.|-.|.||.+..++.+..-++|.+.|..++|.|-                                  
T Consensus       342 PDGKy--IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~  419 (636)
T KOG2394|consen  342 PDGKY--IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA  419 (636)
T ss_pred             CCccE--EEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence            99876  999999999999999999999999999999999999830                                  


Q ss_pred             -C-------------CEEEEEeCCCeEEEEecCCcee
Q 002782          200 -G-------------STLISAGRDKVVNLWDLRDYSC  222 (882)
Q Consensus       200 -~-------------~~l~s~~~dg~i~vwd~~~~~~  222 (882)
                       +             -++-+.+.|..+.+||+.....
T Consensus       420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence             1             2467888999999999976543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=1e-13  Score=131.12  Aligned_cols=235  Identities=15%  Similarity=0.160  Sum_probs=184.8

Q ss_pred             CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce---EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782          395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       395 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~  471 (882)
                      -..+|+|.+  +.+++.. ++.+..+..+.||......   ...++..|...|+.+.|+|..+ .+++++.|..-++|..
T Consensus         9 ~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcccccc
Confidence            356888988  8888887 9999999999999887654   6678889999999999999976 6999999999999998


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeE----EEEecccCceEEEEEcCC
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV----VTFRGHKRGIWSVEFSPV  547 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~s~~  547 (882)
                      ..+.       ..++...+..++...+++.|+|.++.+|+|+..+.|.||-++....-    ..-+.+.+.|++++|+|+
T Consensus        85 ~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn  157 (361)
T KOG1523|consen   85 PSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN  157 (361)
T ss_pred             CCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence            5332       34456666778899999999999999999999999999987654322    122346788999999999


Q ss_pred             CCEEEEeeCCCcEEEEecC------------------CCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782          548 DQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  609 (882)
Q Consensus       548 ~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~  609 (882)
                      +-+|++|+.|+..||+..-                  -|.++..+....+.+..+.|+|+|..|+-.+.|+.+.+=|...
T Consensus       158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            9999999999999999741                  1233444545667899999999999999999999999999766


Q ss_pred             Ce-eEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782          610 GE-CIATYDKHEDKIWALAVGKKTEMFATGGSD  641 (882)
Q Consensus       610 ~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  641 (882)
                      .. .+.......-+..++.|-.+. .++.++.|
T Consensus       238 p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  238 PSERVQSVATAQLPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             CchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence            54 344444344667777776444 34455555

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.60  E-value=9.5e-13  Score=135.51  Aligned_cols=415  Identities=16%  Similarity=0.148  Sum_probs=245.2

Q ss_pred             CCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC---CcceEEeeeeee-----------------cCCCEEEEEeecCCe
Q 002782          363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH---SEIVLCLDTCAL-----------------SSGKILIVTGSKDNS  422 (882)
Q Consensus       363 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~-----------------~~~~~~l~~~~~dg~  422 (882)
                      |+...++|..+.+|.+++|+...++....+...   ++...+..|...                 ..+..+++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            446678999999999999999988776655431   222223222211                 123446888999999


Q ss_pred             EEEEeCCCceEEeeee--cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782          423 VRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  500 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  500 (882)
                      |.+|+...++....+.  .|.+.|.++.++.+-. .+.+++.|+.+..|+.....          ...........+.++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~----------~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV----------IIRIWKEQKPLVSSL  150 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce----------eeeeeccCCCccceE
Confidence            9999999999887766  6999999999888765 79999999999999987542          444455566778999


Q ss_pred             EEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC-----CCEEEE-eeCCCcEEEEecCCC----ce
Q 002782          501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVIT-ASGDKTIKIWSISDG----SC  570 (882)
Q Consensus       501 ~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s-~~~d~~i~iwd~~~~----~~  570 (882)
                      +++|||..+++++  ++|++||+++.+.+..|.||.++|.++.|..+     |.++++ ...+..+.+|-+...    ..
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~  228 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSL  228 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchh
Confidence            9999999999987  78999999999999999999999999999877     555554 455666788876542    22


Q ss_pred             eeEeecCcCCEEEEEE-EeCCC---EEEEeecCCeEEEEEcCCCeeE-EEeccCCCceEEEEEcCCC-------------
Q 002782          571 LKTFEGHTSSVLRASF-LTRGA---QIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKT-------------  632 (882)
Q Consensus       571 ~~~~~~h~~~v~~~~~-s~~g~---~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~-------------  632 (882)
                      ...+....-++..=.+ ..++.   .+++...+|.+..+-..-.... ..+..+.   ..++++.++             
T Consensus       229 ~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~---~~~~~~s~g~~a~~~~~~~~~~  305 (541)
T KOG4547|consen  229 SCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVN---GYNADSSKGFLAALFGIDKAHA  305 (541)
T ss_pred             heeeccCCCCeEeccccccccccceEEeeeccCceeeeccccHHHHhcCcccccc---ceeeecccchhhhhcccchhhh
Confidence            2333333333322222 22333   2344444555444322100000 0000000   001111111             


Q ss_pred             --------------------CEE--EEEeCC--CCEEEEECCCHHHHH--HHh-hh-hHHHHhccchHHH----hh---h
Q 002782          633 --------------------EMF--ATGGSD--ALVNLWHDSTAAERE--EAF-RK-EEEAVLRGQELEN----AV---L  677 (882)
Q Consensus       633 --------------------~~l--~s~~~d--g~i~iw~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~----~~---~  677 (882)
                                          +.+  .+-..+  +.+.+.-..++..+.  ... .. .++.+..+....+    ..   .
T Consensus       306 ~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~~~k~~~rqv~~n~~~k~~~~~~~q~~~p~~~~l~v~~~~g~  385 (541)
T KOG4547|consen  306 LLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLVTSKEGKRQVVLNSVAKLGEAEVIQEEPPLTEDLPVLTKGGD  385 (541)
T ss_pred             hhhcccccCchhhhhhhhhcchhhhhhhhccCCcccceeeeecccceeecchhhhhcchhhhcccCcchhcchhhhcCCc
Confidence                                000  000000  001111101100000  000 00 0000000000000    00   0


Q ss_pred             ccchHHHHHHHhhcCCchh-----HH-----HHHHHHH-----------hcchhHHHHHHHHhccCHHHHHHHHHHHHHH
Q 002782          678 DADYTKAIQVAFELRRPHK-----LF-----ELFASVC-----------RKREAELQIEKALHALGKEEIRQLLEYVREW  736 (882)
Q Consensus       678 ~~~~~~a~~~a~~~~~~~~-----~~-----~~~~~~~-----------~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~  736 (882)
                      .+-+.+|...+++.+....     ..     ..+.+.+           .....+..++.++.+++++.+.++++-+...
T Consensus       386 iEv~~earl~~l~i~~~~~~~k~~~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~r  465 (541)
T KOG4547|consen  386 IEVSTEARLSALDINLTSNADKSDESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPR  465 (541)
T ss_pred             ceeeehhhhhhcccccccccchhhhhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhh
Confidence            0011122222222111100     00     0111111           1223356789999999999999999987654


Q ss_pred             -hcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhh
Q 002782          737 -NTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTF  794 (882)
Q Consensus       737 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~  794 (882)
                       .++......+..|+++++..|+ ..+.+.|+....+..++.-..|.++.+.+++....
T Consensus       466 lq~~~~~~~~~l~w~k~~l~~h~-~yl~sv~~~~~~l~~~~~~~~~~ae~~~~~la~~~  523 (541)
T KOG4547|consen  466 LQSRASRGRILLVWLKTRLTSHN-SYLSSVPDQLETLSGKMQKDLRTAEQLGHLLAMEL  523 (541)
T ss_pred             hccccccCchhhhhhhhhhhccc-ceeecCcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             4777888999999999999999 89999998888888888888888888887774433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=1.3e-13  Score=134.21  Aligned_cols=270  Identities=13%  Similarity=0.159  Sum_probs=189.9

Q ss_pred             CceEEEEEeCCCCcEEEEEE-cCCcEEEEeCCCceeeee------eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          354 EEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       354 ~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      ..+..++|..++..-+..+. .+..+..+......+...      ......+|..+.   ..++ . +++|-.+|.+.+|
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~---~~dg-~-Litc~~sG~l~~~  130 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK---LADG-T-LITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh---hcCC-E-EEEEecCCcEEEE
Confidence            34455555443333333333 445555555554443332      334455566553   2333 3 8888999999999


Q ss_pred             eCCCce----EEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782          427 DSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  500 (882)
Q Consensus       427 d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  500 (882)
                      ....+.    .+..+.. ...+..+.-++..++++++|+..  ..+++||+....+.-. ..+.+.-..-..-.-.++++
T Consensus       131 ~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-AKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             eccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-ccCCCCccccceeeeeeccc
Confidence            887432    1222222 25566677777777788889999  8999999987622110 00111111111122356788


Q ss_pred             EEcCC--CcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE-eec
Q 002782          501 AVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEG  576 (882)
Q Consensus       501 ~~s~~--~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~  576 (882)
                      .|-+.  ...||+++.-+.+++||...+ .++..+.-...+++++...|+++++++|..-+.+..||++.++.+.. +.+
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence            89887  889999999999999999865 67778888889999999999999999999999999999999998877 889


Q ss_pred             CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782          577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       577 h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                      -.++|.++..+|.+.+|+++|-|..|+|+|+++.+++.... -...++++-+.++
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            99999999999999999999999999999999977665543 2445566666543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.59  E-value=4.7e-12  Score=127.54  Aligned_cols=376  Identities=16%  Similarity=0.233  Sum_probs=227.6

Q ss_pred             CeEE-EEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEE
Q 002782           40 ESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA  118 (882)
Q Consensus        40 ~~I~-i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~la  118 (882)
                      ..|. .|+..+...-..+.....++...++||.|.+|++.... .|.+|+-+.+..+..+. | ..|..+.|||.++||.
T Consensus        11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~   87 (561)
T COG5354          11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLV   87 (561)
T ss_pred             ceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceee
Confidence            3444 45555555555555577899999999999999987664 69999998887666665 3 6799999999999999


Q ss_pred             EEeC---------------CCcEEEEECCCCeEEEEeecCCCc--EE-EEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782          119 TAGA---------------DRKVLVWDVDGGFCTHYFKGHKGV--VS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKKC  180 (882)
Q Consensus       119 sg~~---------------dg~v~vwd~~~~~~~~~~~~h~~~--V~-~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~  180 (882)
                      +-+.               +..+.|||+.+|..+..+.+-..+  .+ -+.|+-++.+  ++-. ....++|+++ ++..
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~n~  163 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TDNI  163 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CCcc
Confidence            9653               235999999999999998876666  55 7788887654  3322 3345888886 3321


Q ss_pred             ----EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782          181 ----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  256 (882)
Q Consensus       181 ----~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (882)
                          ...++  ...|....|+|.++       ...+..|-.+.                                     
T Consensus       164 ~~~p~~~lr--~~gi~dFsisP~~n-------~~~la~~tPEk-------------------------------------  197 (561)
T COG5354         164 EEHPFKNLR--PVGILDFSISPEGN-------HDELAYWTPEK-------------------------------------  197 (561)
T ss_pred             ccCchhhcc--ccceeeEEecCCCC-------CceEEEEcccc-------------------------------------
Confidence                11111  23466666666541       11133332211                                     


Q ss_pred             hccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccc
Q 002782          257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  336 (882)
Q Consensus       257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  336 (882)
                                   .+..+.+++|.                                                        
T Consensus       198 -------------~~kpa~~~i~s--------------------------------------------------------  208 (561)
T COG5354         198 -------------LNKPAMVRILS--------------------------------------------------------  208 (561)
T ss_pred             -------------CCCCcEEEEEE--------------------------------------------------------
Confidence                         11112222222                                                        


Q ss_pred             ccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782          337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                                                                    +..+..+..-.-.  .+..+..-+.+.|+.+++ 
T Consensus       209 ----------------------------------------------Ip~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~-  239 (561)
T COG5354         209 ----------------------------------------------IPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLV-  239 (561)
T ss_pred             ----------------------------------------------ccCCCeeeeeeeE--eecccEEEEecCCceEEE-
Confidence                                                          2211111000000  000000003334433111 


Q ss_pred             eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782          417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  496 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (882)
                                         ....|.         ..++.++    ....+.++++...           .........++
T Consensus       240 -------------------l~~t~~---------ksnKsyf----gesnLyl~~~~e~-----------~i~V~~~~~~p  276 (561)
T COG5354         240 -------------------LVMTHT---------KSNKSYF----GESNLYLLRITER-----------SIPVEKDLKDP  276 (561)
T ss_pred             -------------------EEEEee---------eccccee----ccceEEEEeeccc-----------ccceecccccc
Confidence                               111111         0111111    1234566666532           11111244678


Q ss_pred             eeEEEEcCCCcEEEEEc--CCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCC-ce
Q 002782          497 INSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDG-SC  570 (882)
Q Consensus       497 i~~~~~s~~~~~la~~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~-~~  570 (882)
                      |...+|.|.++.+++.+  .+..+.++|++..   ..+......=..+.|+|.+++++.++-|   |.|-+||.... .+
T Consensus       277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             ceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            99999999988877654  6778999998876   3334445556778899999999998765   67999997655 44


Q ss_pred             eeEeecCcCCEEEEEEEeCCCEEEEeec------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782          571 LKTFEGHTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  642 (882)
Q Consensus       571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  642 (882)
                      +..+.+....  .+.|+|||.++.+...      |..|+|||+......        ..+.+.|.|.|++..+.+.+.
T Consensus       354 ~~~~~~~n~s--~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         354 AGAFNGLNTS--YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             EEEeecCCce--EeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence            5577665443  3789999998876543      778999998543322        455677888788777766554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=3.5e-15  Score=147.67  Aligned_cols=232  Identities=17%  Similarity=0.209  Sum_probs=191.7

Q ss_pred             eEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCC
Q 002782          399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  478 (882)
Q Consensus       399 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~  478 (882)
                      ...+.  +..+|+. ++.|+..|.+-.+|..++.+...+.. ...|..+.|-.+.+  +++..+...+.+||-...    
T Consensus       132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt----  201 (545)
T KOG1272|consen  132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT----  201 (545)
T ss_pred             Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence            34455  7788988 88888999999999999988776543 35678888887755  455567788999986542    


Q ss_pred             CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCC
Q 002782          479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK  558 (882)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  558 (882)
                             ....+.. ...|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+.+..++-+|-...+-+|...|
T Consensus       202 -------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  202 -------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             -------EEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence                   2222222 34788999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEE
Q 002782          559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  638 (882)
Q Consensus       559 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  638 (882)
                      +|.+|.....+++..+-.|.++|.++++.++|+|++|+|.|..++|||+++...+.++.. ..+...+++|..|  +++.
T Consensus       274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~  350 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL  350 (545)
T ss_pred             eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence            999999999999988889999999999999999999999999999999999887777764 5567788888666  3344


Q ss_pred             eCCCCEEEEECCC
Q 002782          639 GSDALVNLWHDST  651 (882)
Q Consensus       639 ~~dg~i~iw~~~~  651 (882)
                      +....+.||...-
T Consensus       351 ~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  351 SYGDHVQIWKDAL  363 (545)
T ss_pred             ecCCeeeeehhhh
Confidence            4445689997653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.5e-12  Score=141.68  Aligned_cols=236  Identities=11%  Similarity=0.072  Sum_probs=159.4

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      ..|.++|....... .+..+...+....  ++|+|+.++++..  .+..+.+|++.+++..... ...+.+....|+|+|
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC
Confidence            37888888765543 3444556777777  9999998444432  3457999999887543322 223334568999999


Q ss_pred             CcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC-C--cEEEEeCCCcee
Q 002782          454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVS  528 (882)
Q Consensus       454 ~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d-g--~i~iwd~~~~~~  528 (882)
                      +.++++.+.+|  .|.+||+.+..          . ..+..+...+....|+|||+.|+..+.+ +  .|+++|+.++..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~----------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQ----------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCC----------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            86665656555  48888886542          1 1112233456789999999988776654 4  455557766644


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCe---E
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V  602 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~---i  602 (882)
                       ..+..+........|+|||++|+..+.+   ..|.+||+.++... .+... .......|+|||++|+.++.++.   +
T Consensus       324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence             3334344456678999999998876543   35889999887643 33221 22345789999999999988764   6


Q ss_pred             EEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          603 KLWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       603 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                      .++++ +|.....+.+|.+.+...+|+|
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            77776 5666777878888888889987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=4.7e-12  Score=121.90  Aligned_cols=291  Identities=18%  Similarity=0.202  Sum_probs=183.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--
Q 002782          102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--  178 (882)
Q Consensus       102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--  178 (882)
                      ...+..++|++.-.-+|++..|-.|++||-.. ++...++ ..+..|++++|-|.+.. .|+.|+..| |.+|.....  
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeeeeecce-eEEEEcCcccc
Confidence            35677889999777788999999999999877 4444444 34667999999998654 577777766 999976421  


Q ss_pred             --eE----------EEEecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782          179 --KC----------VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD  245 (882)
Q Consensus       179 --~~----------~~~l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (882)
                        ..          +..-.+| .+|++|.|.+||..+++++. |..|.+||.+++..+.-                    
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------------------  233 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------------------  233 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------------------
Confidence              11          1122344 68999999999999988874 56777777765432210                    


Q ss_pred             cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782          246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD  325 (882)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (882)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (445)
T KOG2139|consen  234 --------------------------------------------------------------------------------  233 (445)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeee
Q 002782          326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC  405 (882)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  405 (882)
                                                                                        .....+.+.-+.  
T Consensus       234 ------------------------------------------------------------------~~~glgg~slLk--  245 (445)
T KOG2139|consen  234 ------------------------------------------------------------------IPKGLGGFSLLK--  245 (445)
T ss_pred             ------------------------------------------------------------------cccCCCceeeEE--
Confidence                                                                              001111222233  


Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc---
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM---  482 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---  482 (882)
                      ++|++.. +++++-|+..++|+..............+.|...+|+|.|..+|++.+..-.+.-..+.........+.   
T Consensus       246 wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k  324 (445)
T KOG2139|consen  246 WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK  324 (445)
T ss_pred             EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence            8899998 778888999999965433222222334459999999999998888887665554443333211111111   


Q ss_pred             ------cccchhhhh---hcCCCeeEEEEcCCCcEEEEEcCCCc--------EEEEeCCCceeEEEEe-c--ccCceEEE
Q 002782          483 ------NLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRT--------ACVWRLPDLVSVVTFR-G--HKRGIWSV  542 (882)
Q Consensus       483 ------~~~~~~~~~---~~~~~i~~~~~s~~~~~la~~s~dg~--------i~iwd~~~~~~~~~~~-~--h~~~v~~l  542 (882)
                            .+....+..   --.+.+.+++|.|.|.++|+.-..+.        |.+||....-.+.-.. +  .......+
T Consensus       325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I  404 (445)
T KOG2139|consen  325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI  404 (445)
T ss_pred             eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence                  111111111   12567899999999999998755433        6667765543322211 1  11224556


Q ss_pred             EEcC---CCCEEEEeeCCCcEEEEec
Q 002782          543 EFSP---VDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       543 ~~s~---~~~~l~s~~~d~~i~iwd~  565 (882)
                      +|+|   ++.+|..+=..|.+.-|++
T Consensus       405 sF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  405 SFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EeeecccCCcEEEEEeccCceEeeee
Confidence            6665   4566666666677777765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=1.3e-12  Score=124.76  Aligned_cols=193  Identities=18%  Similarity=0.245  Sum_probs=119.6

Q ss_pred             ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCC------CCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782          442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  515 (882)
Q Consensus       442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d  515 (882)
                      .-|++..|+|..-++++-.+..|+|++.|++...      ...+.+........+..--..|..+.|+++|+++++-+. 
T Consensus       214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-  292 (433)
T KOG1354|consen  214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-  292 (433)
T ss_pred             HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-
Confidence            4566777777766677777777888888776321      011111122233333444567899999999999998654 


Q ss_pred             CcEEEEeC-CCceeEEEEeccc------------Cce---EEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeEeecCc
Q 002782          516 RTACVWRL-PDLVSVVTFRGHK------------RGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFEGHT  578 (882)
Q Consensus       516 g~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~  578 (882)
                      -+|++||+ ...+++.++.-|.            ..|   ..++|+.++..++||+....+++|++..|.. -.+++...
T Consensus       293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr  372 (433)
T KOG1354|consen  293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASR  372 (433)
T ss_pred             ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccc
Confidence            58999999 5667777777663            222   4578999999999999999999999877643 23333222


Q ss_pred             CC--EEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782          579 SS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  647 (882)
Q Consensus       579 ~~--v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  647 (882)
                      ..  ...+   ..-+.+.+++......+|       +..++ ....+...+|+|..+.+|.+..+. +.++
T Consensus       373 ~~~~~~~~---~k~~~V~~~g~r~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  373 KNMKPRKV---LKLRLVSSSGKRKRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             cCCccccc---ccceeeecCCCccccccc-------cchhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            11  1110   111233444443332221       11122 345567778999999999887765 4444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.4e-12  Score=132.88  Aligned_cols=290  Identities=16%  Similarity=0.148  Sum_probs=201.8

Q ss_pred             CCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782           59 GSDTITALALSPDDKLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT  137 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~  137 (882)
                      +...-+.|..||||+|+ |+|..-..|++||+.+..+-..-.-....|.-.-.+.|-..++.-..|.+|-+..--+-...
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~  129 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR  129 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence            56677999999999986 56777899999999876654433323456666666777666776677777765543222111


Q ss_pred             EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                      ..+.   ..-..++++.-...  |+.++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|-+||.
T Consensus       130 ~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  130 TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            1111   12234445433333  666666677999999999999999888899999999999999999999999999999


Q ss_pred             CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782          218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS  297 (882)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~  297 (882)
                      ++.+.+.++.....+.+..                                                             
T Consensus       205 R~ksrv~~l~~~~~v~s~p-------------------------------------------------------------  223 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHP-------------------------------------------------------------  223 (703)
T ss_pred             hhhhhheeeecccccCCCc-------------------------------------------------------------
Confidence            8877665554433221100                                                             


Q ss_pred             eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782          298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ  377 (882)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  377 (882)
                        .......++++.|..++-.+.+++.+|.+++|++...      .+....-.++.-+|..+.|.+.+..--++......
T Consensus       224 --g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~  295 (703)
T KOG2321|consen  224 --GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI  295 (703)
T ss_pred             --cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC------CceeecccCCccceeeecccccCCCceEEecchHH
Confidence              0112245677778777888888999999999988753      22334445566788889998776666666666689


Q ss_pred             EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782          378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  426 (882)
Q Consensus       378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw  426 (882)
                      ++|||-.+++....+....+ +..+.  +.|++.. ++++..++.+..|
T Consensus       296 ~kiWd~~~Gk~~asiEpt~~-lND~C--~~p~sGm-~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  296 LKIWDECTGKPMASIEPTSD-LNDFC--FVPGSGM-FFTANESSKMHTY  340 (703)
T ss_pred             hhhcccccCCceeeccccCC-cCcee--eecCCce-EEEecCCCcceeE
Confidence            99999999998877665443 55444  7788876 7777766655444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=3.3e-12  Score=130.19  Aligned_cols=281  Identities=15%  Similarity=0.177  Sum_probs=191.9

Q ss_pred             ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC
Q 002782          351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  430 (882)
Q Consensus       351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  430 (882)
                      ++......+..++++.-.+++|.....|++||+.+......-......|.-.-  .+.+-.. ++.-..|.+|.+-....
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK-~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSK-SVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhh-heEeecCceeeehhhcC
Confidence            45566678888887777888999999999999988765433322233333221  2222222 44445566665533221


Q ss_pred             ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782          431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  510 (882)
Q Consensus       431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la  510 (882)
                      ......+.   ..-..++++.-.-. |..++....|+-+++..+.          ....+......++++.+++...+|+
T Consensus       126 ~hy~~RIP---~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  126 RHYRTRIP---KFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             eeeeeecC---cCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence            11100111   11223444332222 4445555567777777653          3333344457899999999999999


Q ss_pred             EEcCCCcEEEEeCCCceeEEEEec------ccC-----ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-cCc
Q 002782          511 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHT  578 (882)
Q Consensus       511 ~~s~dg~i~iwd~~~~~~~~~~~~------h~~-----~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~  578 (882)
                      +|+.+|.|..||.++...+.++..      |..     .|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +..
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e  271 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE  271 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence            999999999999988766666553      222     49999999999999999999999999999887765443 334


Q ss_pred             CCEEEEEEEeCC--CEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          579 SSVLRASFLTRG--AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       579 ~~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      -+|..+.|.+.+  ..++|.. ...++|||-.+|+....+. ....+..+++-|++.+++++-.++.+..|-+.
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             cceeeecccccCCCceEEecc-hHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            578888887653  4455443 3689999999999998887 45569999999999999999999888776554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=2.9e-11  Score=114.81  Aligned_cols=104  Identities=21%  Similarity=0.252  Sum_probs=82.1

Q ss_pred             EEEeecCCeEEEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCe-EEEEecCCCCCCCCCcccccchhhh
Q 002782          414 IVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKAKAVV  490 (882)
Q Consensus       414 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~  490 (882)
                      ..-|-.-|.|+|-|+...+.  .....+|.+.|.|++.+.+|. ++|++|..|+ |++||..++....+        ...
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E--------~RR  222 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQE--------LRR  222 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeee--------eec
Confidence            34455679999999886655  366789999999999999987 8999999998 78999887642111        111


Q ss_pred             hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782          491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  526 (882)
Q Consensus       491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~  526 (882)
                      ......|.+++|||+..+||++|..|++.||.+...
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            123357999999999999999999999999998653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.7e-12  Score=139.95  Aligned_cols=239  Identities=13%  Similarity=0.081  Sum_probs=156.2

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      ..|.++|... .....+..+...+.+..  ++|+|+.++++...+  ..|.+||+.+++.... ....+.+.+.+|+|+|
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence            4677777643 33344556667777777  899999844443332  4699999998865433 3334556789999999


Q ss_pred             CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCcEEEEe--CCCceeEE
Q 002782          454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWR--LPDLVSVV  530 (882)
Q Consensus       454 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~i~iwd--~~~~~~~~  530 (882)
                      +.++++.+.++...+|.++....         ....+..+........|+|||+.|+..+. ++...+|.  +.++....
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence            87666788888888877653211         11112223344567889999998876654 45556664  44443322


Q ss_pred             EEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC---eEEE
Q 002782          531 TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKL  604 (882)
Q Consensus       531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i~i  604 (882)
                       +..+........|||||++|+..+.++   .|.+||+.+++...... + .......|+|||++|+.++.++   .+.+
T Consensus       323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence             222223345678999999998876654   69999998876543322 2 2345689999999998877654   3555


Q ss_pred             EEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782          605 WTVRTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       605 wd~~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                      .++ +|.....+..+.+.+...+|+|-
T Consensus       400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        400 VSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEC-CCCceEEeecCCCCCCCCccCCC
Confidence            566 56666666667777777888773

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=3e-12  Score=121.92  Aligned_cols=151  Identities=19%  Similarity=0.322  Sum_probs=112.5

Q ss_pred             ceEEccCCCEEEEEeCC-----------eEEEEEc--CCCceeeeecC-CCccEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 002782           24 PLVVSSDGSFIACACGE-----------SINIVDL--SNASIKSTIEG-GSDTITALALSPDDKLLFSS--GHSREIRVW   87 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-----------~I~i~d~--~~~~~~~~l~~-~~~~I~~l~~spd~~~las~--~~dg~i~iw   87 (882)
                      .+.|+|+|++|++-...           ...+|.+  ... ....+.- ..++|.+++|+|+|+.+|+.  ..++.|.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            57899999998876551           2444444  333 3444433 34579999999999987665  356799999


Q ss_pred             ECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782           88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG  164 (882)
Q Consensus        88 d~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~---dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg  164 (882)
                      |++ ++.+..+.  ..++..+.|+|+|++|++|+.   .|.|.+||+.+.+.+.... | ..++.++|+|+|+.  ++++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~--~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY--LATA  161 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE--EEEE
Confidence            996 66666664  578889999999999999874   3679999999988887765 3 34789999999876  6655


Q ss_pred             e------CCCcEEEEECCCCeEEEE
Q 002782          165 S------DDATVRVWDLLAKKCVAT  183 (882)
Q Consensus       165 s------~dg~I~vwd~~~~~~~~~  183 (882)
                      +      .|+.++||+.. |+.+..
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EeccceeccccEEEEEec-CeEeEe
Confidence            4      37889999984 555544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=3.8e-11  Score=122.79  Aligned_cols=317  Identities=14%  Similarity=0.184  Sum_probs=195.9

Q ss_pred             CCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-----eC-----CCcEEEEECCC
Q 002782           22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-----GH-----SREIRVWDLST   91 (882)
Q Consensus        22 g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-----~~-----dg~i~iwd~~~   91 (882)
                      ....++|++|+++|++.++.|.|++..++..+.+...-  .+.++.|||-|.+|.+-     ..     ...+.+|++++
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet  114 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET  114 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence            34688999999999999999999999998655544432  78999999999999863     11     34688999999


Q ss_pred             CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEE-----EeC
Q 002782           92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-----GSD  166 (882)
Q Consensus        92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~s-----gs~  166 (882)
                      +.....+......-++..|++|..+.|-- ..+.+.+|+..+-... .-+-|...|+.+.++|.+....+++     ++.
T Consensus       115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  115 GVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             ceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence            66555554322222689999998754432 3477999999773322 2233678899999999866555554     355


Q ss_pred             CCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEE-Ee--CCC---------eEEEEecCCceeeeeecCcce
Q 002782          167 DATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLIS-AG--RDK---------VVNLWDLRDYSCKLTVPTYEM  231 (882)
Q Consensus       167 dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s-~~--~dg---------~i~vwd~~~~~~~~~~~~~~~  231 (882)
                      -+.|++|.+.....-..+.   -....=..+.|++-|.-|+. ++  -|.         ++++.++...++...+.    
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----  268 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----  268 (566)
T ss_pred             CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----
Confidence            6789999876322111110   01112234667766653332 22  122         12222222111111111    


Q ss_pred             eeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEE
Q 002782          232 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT  311 (882)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (882)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (566)
T KOG2315|consen  269 --------------------------------------------------------------------------------  268 (566)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE-EEcCCcEEEEeCCCceeee
Q 002782          312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSY  390 (882)
Q Consensus       312 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~  390 (882)
                                                              ..++|.++.|++....+.++ |..-..+.+||+...-.  
T Consensus       269 ----------------------------------------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--  306 (566)
T KOG2315|consen  269 ----------------------------------------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--  306 (566)
T ss_pred             ----------------------------------------CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--
Confidence                                                    13455566665543333332 23345566666543322  


Q ss_pred             eeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee-C-----
Q 002782          391 VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-S-----  462 (882)
Q Consensus       391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~-~-----  462 (882)
                       +.-..++-.++-  ++|.|+.++++|-.  .|.|-+||..+.+++..+....  -+-+.|+|+|+ ++++++ .     
T Consensus       307 -~df~egpRN~~~--fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe-~flTATTaPRlrv  380 (566)
T KOG2315|consen  307 -FDFPEGPRNTAF--FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGE-YFLTATTAPRLRV  380 (566)
T ss_pred             -EeCCCCCccceE--ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCc-EEEEEeccccEEe
Confidence             222233344444  88999986666644  4899999999988887766544  35578999999 455554 2     


Q ss_pred             CCeEEEEecCCC
Q 002782          463 DHTIKVWSFDGL  474 (882)
Q Consensus       463 dg~i~~wd~~~~  474 (882)
                      |+.++||+....
T Consensus       381 dNg~KiwhytG~  392 (566)
T KOG2315|consen  381 DNGIKIWHYTGS  392 (566)
T ss_pred             cCCeEEEEecCc
Confidence            788999998753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.2e-12  Score=139.93  Aligned_cols=235  Identities=16%  Similarity=0.100  Sum_probs=157.2

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee---cCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  452 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~  452 (882)
                      ..|.+||..... ...+..+...+.+..  ++|+|+. ++..+   .+..|++||+.+++.... ....+...+..|+|+
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~--wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPA--WSPDGKK-LAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCcccccc--CCCCCCE-EEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence            368888875443 344555666777777  8999998 55444   234699999988765433 333445567899999


Q ss_pred             CCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCc--EEEEeCCCce
Q 002782          453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLV  527 (882)
Q Consensus       453 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~--i~iwd~~~~~  527 (882)
                      |+.++++.+.+|  .|.+||+.++.           ...+..+.......+|+|||+.|+..+. +|.  |+++++.+++
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            987666766666  58888886542           1112223334567899999998887663 444  7777777665


Q ss_pred             eEEEEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---Ce
Q 002782          528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GL  601 (882)
Q Consensus       528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~  601 (882)
                      ... +..+.......+|+|||+.|+..+.++   .|.+||+.++... .+. +........|+|||++++..+.+   +.
T Consensus       328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            432 222333455789999999998765443   6999999887654 333 22234567999999998777664   36


Q ss_pred             EEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          602 VKLWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       602 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                      |.++++. |.....+..+.+.+...+|+|
T Consensus       405 L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            8888874 455566665667777778876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=2.2e-12  Score=122.80  Aligned_cols=149  Identities=19%  Similarity=0.281  Sum_probs=112.9

Q ss_pred             eEEEEcCCCcEEEEEcC----------CCcEEEEeCCC-ceeEEEEec-ccCceEEEEEcCCCCEEEEe--eCCCcEEEE
Q 002782          498 NSLAVAPNDSLVCTGSQ----------DRTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW  563 (882)
Q Consensus       498 ~~~~~s~~~~~la~~s~----------dg~i~iwd~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~--~~d~~i~iw  563 (882)
                      ..+.|+|+|.+|++-..          -+...+|.++. ......+.- ..++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988776443          12355555522 233334432 34579999999999987654  456799999


Q ss_pred             ecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782          564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  640 (882)
Q Consensus       564 d~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  640 (882)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.|.+||+++.+++.+.. |. .+..++|+|||++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEe
Confidence            996 67777764  5677889999999999998754   679999999999998876 33 4789999999999999874


Q ss_pred             ------CCCEEEEECCC
Q 002782          641 ------DALVNLWHDST  651 (882)
Q Consensus       641 ------dg~i~iw~~~~  651 (882)
                            |..++||+...
T Consensus       164 ~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ccceeccccEEEEEecC
Confidence                  78899999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=6.7e-12  Score=136.62  Aligned_cols=189  Identities=17%  Similarity=0.150  Sum_probs=132.0

Q ss_pred             ceEEccCCCEEEEEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeeEE
Q 002782           24 PLVVSSDGSFIACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSR--EIRVWDLSTLKCLR   96 (882)
Q Consensus        24 ~va~s~dg~~la~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~dg--~i~iwd~~~~~~~~   96 (882)
                      ..+|||||+.|++...    ..|.+||+.+|+..... .....+.+++|||||+.|+.. +.+|  .|.+||+.+++..+
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            6899999999998642    27999999988644322 222334578999999988865 4444  59999999887654


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CC--CcE
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGAD-R--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DD--ATV  170 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~d-g--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~d--g~I  170 (882)
                      . ..+...+....|+|||+.|+..+.+ +  .|.++|+.++.. ..+..+........|+||++.  ++..+ .+  ..|
T Consensus       282 l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~--Ia~~~~~~g~~~I  357 (429)
T PRK03629        282 V-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKF--MVMVSSNGGQQHI  357 (429)
T ss_pred             c-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCE--EEEEEccCCCceE
Confidence            4 4445677889999999999887754 3  455557777654 344444455677899999875  44433 33  358


Q ss_pred             EEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe---EEEEecCC
Q 002782          171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV---VNLWDLRD  219 (882)
Q Consensus       171 ~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~---i~vwd~~~  219 (882)
                      .+||+.++... .+... .......|+|||+.|+.++.++.   +.+++++.
T Consensus       358 ~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        358 AKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            88999888644 33322 23446789999999999987764   66777643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=5.1e-12  Score=123.18  Aligned_cols=211  Identities=16%  Similarity=0.187  Sum_probs=159.1

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce----eeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--C
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N  421 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g  421 (882)
                      ...+....|..+..   .+..|+++..+|.+.+|....+.    ....+..+ ..+..+.  -.+....++++|+..  .
T Consensus       100 ~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r--~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVR--QTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccccccccchhh---cCCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeeec--cCCCCCceEecCchhccc
Confidence            34445556666655   34578888999999999988443    22233333 3333443  445666668889998  8


Q ss_pred             eEEEEeCCCceEEeeeecc---------cccEEEEEEccC-CCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          422 SVRLWDSESRCCVGVGTGH---------MGAVGAVAFSKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~---------~~~v~~v~~s~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                      .+.+||+...+.+.....-         .-.++++.|.+. ....|++++.-+.+++||......         +...+.
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---------PV~~fd  244 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---------PVAQFD  244 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---------ceeEec
Confidence            8999999988655443321         124566777665 234799999999999999885432         333344


Q ss_pred             hcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE-EecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce
Q 002782          492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  570 (882)
Q Consensus       492 ~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  570 (882)
                      ....+++++...|+|+++++|..-|.+..||++.++.... +.+-.+.|.++..+|..++|++++-|..|||+|+++.++
T Consensus       245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            4577899999999999999999999999999999999887 888999999999999999999999999999999998666


Q ss_pred             eeE
Q 002782          571 LKT  573 (882)
Q Consensus       571 ~~~  573 (882)
                      +..
T Consensus       325 l~k  327 (412)
T KOG3881|consen  325 LHK  327 (412)
T ss_pred             hhh
Confidence            543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-11  Score=134.97  Aligned_cols=235  Identities=12%  Similarity=0.009  Sum_probs=157.4

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      ..|.++|.... ....+..|...+.+..  ++|+|+.++.+..  .+..|.+||+.++... .+..+.+.+...+|+|+|
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence            47888887544 3445667777888888  9999998444432  3468999999888654 344556677889999999


Q ss_pred             CcEEEEeeCCCe--EEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCcee
Q 002782          454 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS  528 (882)
Q Consensus       454 ~~~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~  528 (882)
                      +.++++.+.++.  |.+||+.+..           ...+..+........|+|||+.|+..+. +|  .|+++|+.++..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            877777777766  5556765432           1112224445667899999998887663 33  688889876654


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC------
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------  599 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------  599 (882)
                      . .+..+...+....|+|||+.|+..+.+   ..|.+||+..+.. +.+. ....+....|+|||++|+..+.+      
T Consensus       327 ~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~  403 (435)
T PRK05137        327 R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA  403 (435)
T ss_pred             E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence            3 333345556778999999999877643   3688889865543 3332 22346678999999998776543      


Q ss_pred             CeEEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          600 GLVKLWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                      ..+.++|+..+.. ..+. ..+.+...+|+|
T Consensus       404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             ceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence            2577788765544 3444 244566667766

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.1e-10  Score=118.75  Aligned_cols=157  Identities=12%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             EEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEe
Q 002782           42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG  121 (882)
Q Consensus        42 I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~  121 (882)
                      ...|+.........-...+-.-+-+.|||-|.||++-...| |.+|--++...++.|. | ..|.-+.|||..+||+|-+
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s  268 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYS  268 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEec
Confidence            55676554432222222334568899999999999987754 8899877777777775 4 5688999999999999976


Q ss_pred             C-----------CCcEEEEECCCCeEEEEeecC--CCcE-EEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 002782          122 A-----------DRKVLVWDVDGGFCTHYFKGH--KGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH  187 (882)
Q Consensus       122 ~-----------dg~v~vwd~~~~~~~~~~~~h--~~~V-~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h  187 (882)
                      .           ...++|||+.+|.....|...  ...+ .-..||.|+.+  +|.-.. ..|.||+..+..++..-.-.
T Consensus       269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy--~Arm~~-~sisIyEtpsf~lld~Kslk  345 (698)
T KOG2314|consen  269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY--FARMTG-NSISIYETPSFMLLDKKSLK  345 (698)
T ss_pred             CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce--eEEecc-ceEEEEecCceeeecccccC
Confidence            2           257999999999988877652  2222 34678988765  665555 45999987765544333334


Q ss_pred             ccceEEEEEccCCCEEE
Q 002782          188 FSRVTSMAITSDGSTLI  204 (882)
Q Consensus       188 ~~~v~~l~~s~~~~~l~  204 (882)
                      .+.|....|+|.+..|+
T Consensus       346 i~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  346 ISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             CccccCcccCCCcceEE
Confidence            56788899999866554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3e-10  Score=118.81  Aligned_cols=496  Identities=16%  Similarity=0.195  Sum_probs=266.9

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCc---------------eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNAS---------------IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW   87 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~---------------~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iw   87 (882)
                      +++|+....|+|+|+.+ -+.+..+.+..               .-++++||.+.|.-+.|..+.+.|-+...+|.|.+|
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence            68999999999999876 56676654321               225788999999999999999999999999999999


Q ss_pred             ECCCCeeEEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEecCC--------
Q 002782           88 DLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDT--------  156 (882)
Q Consensus        88 d~~~~~~~~~~~--~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~f~~~~--------  156 (882)
                      -+-.|.-.....  -.++.|.+|+|..||+.++....||.|.|=.+++.+.-. .+++  .....+.|++|.        
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~a  176 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKA  176 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhc
Confidence            987775433322  245789999999999999999999988876665443110 0110  011122333332        


Q ss_pred             ---------------------------------------------------CccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782          157 ---------------------------------------------------DKSLLFSGSDDATVRVWDLLAKKCVATLD  185 (882)
Q Consensus       157 ---------------------------------------------------~~~~l~sgs~dg~I~vwd~~~~~~~~~l~  185 (882)
                                                                         ++..|+.+...|.+.+-.-.+......+.
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d  256 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD  256 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence                                                               22345555555555554332221111111


Q ss_pred             CcccceEEEEEccCCCEEEEEeCCC---------eEEEEecCCceeeeeecCcc-eeeEEEecCCCCCcccccccchhhh
Q 002782          186 KHFSRVTSMAITSDGSTLISAGRDK---------VVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQT  255 (882)
Q Consensus       186 ~h~~~v~~l~~s~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  255 (882)
                       ..-.+....|+++|..|+.+|.+.         .|.++.. -+....++..+. .+.++++-..+-.++-...++--..
T Consensus       257 -tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfa  334 (1189)
T KOG2041|consen  257 -TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFA  334 (1189)
T ss_pred             -cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEE
Confidence             113577889999999999998653         2333322 222333333222 3444444333322211111110000


Q ss_pred             hhccccc-----cceEEEEEcCC---CeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782          256 IKKKRRS-----LEIHFITVGER---GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ  327 (882)
Q Consensus       256 ~~~~~~~-----~~~~~~~~~~~---g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  327 (882)
                      ..+..-.     ....++-.+.+   -.|.+||..+..-+...             -..+..+++..+.--++.-..++.
T Consensus       335 nIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~-------------V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  335 NIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT-------------VTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             eecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh-------------hcceeehheecccEEEEeccccCC
Confidence            0000000     00011111111   12445554443110000             011122222222222222233344


Q ss_pred             EEEEEecccccccceeeeeeeec-ccCCceEE--EEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC---CCcceEE
Q 002782          328 LLLYTTVEVPEKKMELILSKRLV-GYNEEILD--LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---HSEIVLC  401 (882)
Q Consensus       328 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~--~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~v~~  401 (882)
                      +.-++..+.......+.+...+. ......++  -.|..-++..++.++. ..+.+|.....+....+.+   |...-..
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~-e~~~iWhy~~pK~~s~l~~~k~rkegr~h  480 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE-ERYFIWHYVLPKFNSVLAGVKIRKEGRFH  480 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc-ccEEEEEEeccchhhhhhhhhhccccccc
Confidence            44332222211111111111110 01111122  2344445666666666 6788888765544433332   1111111


Q ss_pred             eeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782          402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  481 (882)
Q Consensus       402 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  481 (882)
                      .+  .       .-+|+.|+.+.   ..    ..++.+...+|.+++.+..   ++..+-..|.|.-+.++...      
T Consensus       481 ~D--d-------tp~ga~d~~l~---ys----~kt~~G~~DpICAl~~sdk---~l~vareSG~I~rySl~nv~------  535 (1189)
T KOG2041|consen  481 GD--D-------TPEGAQDRTLE---YS----TKTLLGSKDPICALCISDK---FLMVARESGGIYRYSLNNVV------  535 (1189)
T ss_pred             CC--C-------Cccchhhceee---cc----ceeeccCCCcceeeeecce---EEEEEeccCceEEEEeccee------
Confidence            11  1       23344454432   22    2345677889999998864   89999999999999987642      


Q ss_pred             ccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC---CceeEE-EEecccCceEEEEEcCCCCEEEEeeCC
Q 002782          482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGD  557 (882)
Q Consensus       482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~---~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~d  557 (882)
                           ......-...+.++++.-+...+|.-..-|.+.+.|+.   ++..+. .+......||.+.|..|...+++--.-
T Consensus       536 -----l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeK  610 (1189)
T KOG2041|consen  536 -----LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEK  610 (1189)
T ss_pred             -----eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhh
Confidence                 11112234567888888888889988888889988876   334433 444567789999999988777766665


Q ss_pred             CcEEEEecCC
Q 002782          558 KTIKIWSISD  567 (882)
Q Consensus       558 ~~i~iwd~~~  567 (882)
                      ..+.|++-.+
T Consensus       611 trmyifrgnd  620 (1189)
T KOG2041|consen  611 TRMYIFRGND  620 (1189)
T ss_pred             ceEEEecCcC
Confidence            6677776433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.2e-11  Score=132.32  Aligned_cols=215  Identities=9%  Similarity=-0.026  Sum_probs=146.5

Q ss_pred             CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee--CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782          421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  498 (882)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (882)
                      ..|.++|..... ...+..|...+.+.+|+|+|+.++.+..  .+..|.+||+.++..           ..+..+...+.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----------~~l~~~~g~~~  249 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----------ELVGNFPGMTF  249 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------EEeecCCCccc
Confidence            378888886543 3445677889999999999985444332  346899999876521           11223445667


Q ss_pred             EEEEcCCCcEEE-EEcCCCc--EEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC-C--CcEEEEecCCCceee
Q 002782          499 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLK  572 (882)
Q Consensus       499 ~~~~s~~~~~la-~~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d--~~i~iwd~~~~~~~~  572 (882)
                      +.+|+|||+.|+ +.+.++.  |++||+.++.. ..+..+........|+|||+.|+..+. +  ..|++||+.++... 
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-  327 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-  327 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence            889999998776 4555554  77789887755 445556666778999999998887664 3  36888898766543 


Q ss_pred             EeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC------CC
Q 002782          573 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL  643 (882)
Q Consensus       573 ~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~  643 (882)
                      .+..+...+....|+|||++|+..+.+   ..|.+||+..+.. ..+. ....+..+.|+|||++|+..+.+      ..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            333344556678899999999887653   3688889765543 3333 22346778999999988765543      24


Q ss_pred             EEEEECCC
Q 002782          644 VNLWHDST  651 (882)
Q Consensus       644 i~iw~~~~  651 (882)
                      |.++++..
T Consensus       406 L~~~dl~g  413 (435)
T PRK05137        406 LYTVDLTG  413 (435)
T ss_pred             EEEEECCC
Confidence            66666654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=8.7e-12  Score=128.53  Aligned_cols=208  Identities=11%  Similarity=0.186  Sum_probs=163.1

Q ss_pred             EEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhh
Q 002782          413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  492 (882)
Q Consensus       413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  492 (882)
                      ++|....||.+++|+..+++....+.            |.     +..+..++-..|.+....    .+.....  ... 
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~----s~~k~~~--~~~-   62 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFA------------PI-----ASLSGTCTYTKWGLSADY----SPMKWLS--LEK-   62 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeec------------cc-----hhccCcceeEEEEEEecc----chHHHHh--HHH-
Confidence            48999999999999999887765543            21     223333445566643221    0111111  111 


Q ss_pred             cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce
Q 002782          493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  570 (882)
Q Consensus       493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  570 (882)
                            ....+.+-..++-|...|.|.+|+...++....+.  .|.++|.++.++.+-.+|.+++.|+.+..|+..++..
T Consensus        63 ------~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   63 ------AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             ------HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence                  11123455678889999999999999999888877  4999999999999999999999999999999999999


Q ss_pred             eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC-----CCEEEE-EeCCCCE
Q 002782          571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSDALV  644 (882)
Q Consensus       571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s-~~~dg~i  644 (882)
                      ++.+.+....+..++.+|||..|++++  +.|++||+.+++.+.+|.+|.++|.++.|..+     |.++.+ ...+..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            999999999999999999999999887  68999999999999999999999999999877     566554 5566778


Q ss_pred             EEEECCCH
Q 002782          645 NLWHDSTA  652 (882)
Q Consensus       645 ~iw~~~~~  652 (882)
                      .+|....+
T Consensus       215 ~~w~v~~~  222 (541)
T KOG4547|consen  215 TVWVVEKE  222 (541)
T ss_pred             eEEEEEcc
Confidence            99987754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.4e-11  Score=134.42  Aligned_cols=206  Identities=12%  Similarity=0.071  Sum_probs=133.7

Q ss_pred             CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782          421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  498 (882)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (882)
                      ..+.++|.... ....+..+...+.+.+|+|+|+.++++...+  ..|.+||+.++..           ..+......+.
T Consensus       176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g~~~  243 (427)
T PRK02889        176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKGSNS  243 (427)
T ss_pred             cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCCCcc
Confidence            45777777443 3334456777899999999998544433222  4599999876521           11111233456


Q ss_pred             EEEEcCCCcEEE-EEcCCCcEEEEe--CCCceeEEEEecccCceEEEEEcCCCCEEEEeeC-CCcEEEEec--CCCceee
Q 002782          499 SLAVAPNDSLVC-TGSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI--SDGSCLK  572 (882)
Q Consensus       499 ~~~~s~~~~~la-~~s~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~--~~~~~~~  572 (882)
                      +.+|+|||+.|+ +.+.++...||.  +.++. ...+..+........|+|||+.|+..+. ++...+|.+  .++....
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence            899999998887 466777766654  44443 4445545555677899999998876654 455666654  4444322


Q ss_pred             EeecCcCCEEEEEEEeCCCEEEEeecCC---eEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782          573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  642 (882)
Q Consensus       573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  642 (882)
                       +..+........|+|||++|+..+.++   .|.+||+.+++......  ........|+|||++|+.++.++
T Consensus       323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC
Confidence             222223344578999999998877654   69999998887543322  22346789999999988776554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.8e-11  Score=130.71  Aligned_cols=195  Identities=21%  Similarity=0.205  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL  117 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l  117 (882)
                      .|.+||...+. .+.+..+...+.+.+|||||+.|+.++.   +..|.+||+.+++... +..+.+...+.+|+|||+.|
T Consensus       185 ~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            58999986544 4455567778999999999999998763   3479999998887543 33344556688999999987


Q ss_pred             EE-EeCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CCCc--EEEEECCCCeEEEEecCcccce
Q 002782          118 AT-AGADR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DDAT--VRVWDLLAKKCVATLDKHFSRV  191 (882)
Q Consensus       118 as-g~~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~dg~--I~vwd~~~~~~~~~l~~h~~~v  191 (882)
                      +. .+.+|  .|.+||+.++... .+..+.......+|+||++.  ++.++ .+|.  |.++|+.+++... +..+....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~  338 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYN  338 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE-eecCCCCc
Confidence            64 44444  5999999988753 45556666678899999765  44444 4454  6677777765432 22233345


Q ss_pred             EEEEEccCCCEEEEEeCCC---eEEEEecCCceeeeeecCcceeeEEEecCCCC
Q 002782          192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS  242 (882)
Q Consensus       192 ~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (882)
                      ...+|+|+|++++..+.++   .|.+||+.++... .+..........+.+++.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~  391 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGS  391 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCC
Confidence            5789999999998776443   6999999776543 222222233445666654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.9e-10  Score=114.87  Aligned_cols=260  Identities=10%  Similarity=0.107  Sum_probs=161.0

Q ss_pred             CcEEEEeCCCceeeeeeeCC--CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          376 EQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      ..+.|||+.+|...+.+...  ...+..+ +-++.++++ +|.-.. .+|.||+..+-.++..-.-.-..|....|+|.+
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frWS~DdKy-~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~  358 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRWSHDDKY-FARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS  358 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccce-EEeccCCce-eEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc
Confidence            57899999999988877763  2233332 126778876 555444 578999988765554444455678888999986


Q ss_pred             CcEEEEeeCC-----CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc----------CCCcE
Q 002782          454 QNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS----------QDRTA  518 (882)
Q Consensus       454 ~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s----------~dg~i  518 (882)
                      . +|+--...     ..+.+-.++...          ...+..-+.-.=..+-|-.+|.+|+.--          .-..+
T Consensus       359 ~-llAYwtpe~~~~parvtL~evPs~~----------~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  359 N-LLAYWTPETNNIPARVTLMEVPSKR----------EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             c-eEEEEcccccCCcceEEEEecCccc----------eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence            5 44432211     223333333221          1111122222223456667888887532          11235


Q ss_pred             EEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC---CCcEEEEecCC----CceeeEeecCcCCEEEEEEEeCCC
Q 002782          519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISD----GSCLKTFEGHTSSVLRASFLTRGA  591 (882)
Q Consensus       519 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~~s~~g~  591 (882)
                      .|+.++..........-...|...+|-|.|..+++-+.   ..++.+|.+.+    .+.+..+..  ...+.+.|+|.|+
T Consensus       428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~  505 (698)
T KOG2314|consen  428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR  505 (698)
T ss_pred             EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc
Confidence            56666554333333335678999999999987776654   35788998773    234455543  4566789999999


Q ss_pred             EEEEee---cCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC------CCCEEEEECCC
Q 002782          592 QIVSCG---ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST  651 (882)
Q Consensus       592 ~l~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------dg~i~iw~~~~  651 (882)
                      +++.+.   ..|.+.++|.....+..+-.......+.+-|.|.|+|++|++.      |.-.++|+...
T Consensus       506 fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  506 FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            987764   4688999998754443332222334577899999999999875      44457777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=2.1e-11  Score=116.81  Aligned_cols=249  Identities=16%  Similarity=0.299  Sum_probs=174.0

Q ss_pred             eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC-CCceeeeeee-CCCcceEEeeeeeecCCCEEEEEeec
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSK  419 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~  419 (882)
                      +......+.|+.+.+.+....| ...-++..+.|..+++|-- ++++.-..+. .-..++.++.  +.++... |+.|-.
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~   88 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQD   88 (404)
T ss_pred             chhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEe
Confidence            3444566778888887777776 5567788888999999964 3343322221 2234455555  6677766 999999


Q ss_pred             CCeEEEEeC----CCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782          420 DNSVRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  495 (882)
Q Consensus       420 dg~i~iwd~----~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  495 (882)
                      +|++.-+.+    +.....+....|...+..+.|+.... .+++.+.|..+. |......... .....         ..
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~-~hc~e~~~~l-g~Y~~---------~~  156 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFA-WHCTESGNRL-GGYNF---------ET  156 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceE-EEeeccCCcc-cceEe---------ec
Confidence            999988854    44556667778999999999987755 788888887654 4432211000 00000         00


Q ss_pred             CeeEEEEcCCCcEEEEEcCCCcEEEEeC--CCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce-ee
Q 002782          496 DINSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LK  572 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~  572 (882)
                      ..+++.+.-.  +...|...|.|..-.+  ....++.++.+|..++.+++|.|....|.+|..|..+.+||+.-++- ..
T Consensus       157 ~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  157 PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence            1111111111  4555666666655544  45578889999999999999999999999999999999999976543 45


Q ss_pred             EeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      .+.+|.+.|..+...+--+.|++++.||.|.+|+.+
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            678899999999998888999999999999999974

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.39  E-value=2.5e-07  Score=108.63  Aligned_cols=463  Identities=16%  Similarity=0.178  Sum_probs=252.7

Q ss_pred             ceEEccCCCEEEEE-eCCeEEEE----EcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC------
Q 002782           24 PLVVSSDGSFIACA-CGESINIV----DLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS------   90 (882)
Q Consensus        24 ~va~s~dg~~la~~-~~~~I~i~----d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~------   90 (882)
                      ++.+-+|..-++++ .++.|.++    +..+..  .+..+   ...|.|++||||+..||..+.+++|.+-+-.      
T Consensus        80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E  156 (928)
T PF04762_consen   80 SFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE  156 (928)
T ss_pred             EEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence            45566777644444 45677777    444333  33333   4589999999999999999999988876421      


Q ss_pred             ---------C--------CeeEEEeec------------------------CCCCEEEEEEcCCCCEEEEEeC---C---
Q 002782           91 ---------T--------LKCLRSWKG------------------------HDGPAIGMACHPSGGLLATAGA---D---  123 (882)
Q Consensus        91 ---------~--------~~~~~~~~~------------------------h~~~V~~l~fs~~~~~lasg~~---d---  123 (882)
                               .        |+.-..|+|                        +...-..++|-.||.|+|+.+.   .   
T Consensus       157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR  236 (928)
T ss_pred             eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence                     0        111111211                        2234467889999999998763   2   


Q ss_pred             CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeC---CCcEEEEECCCCeEEEEe--c--CcccceEEEEE
Q 002782          124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL--D--KHFSRVTSMAI  196 (882)
Q Consensus       124 g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~---dg~I~vwd~~~~~~~~~l--~--~h~~~v~~l~~  196 (882)
                      ..++||+-+ |....+-..-.+--.+++|-|.|+  ++++...   ...|.+|.- +|-....+  +  .....|..+.|
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~--lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W  312 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN--LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW  312 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCC--EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence            579999976 554444444444556789999876  3666543   356777763 33322222  2  34568999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEecCCce--eeeeec--CcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782          197 TSDGSTLISAGRDKVVNLWDLRDYS--CKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  272 (882)
Q Consensus       197 s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (882)
                      ++|+..|+....|. |.+|-...+.  ..+.+.  .......+.|.+..                      +..+.....
T Consensus       313 n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~----------------------p~~L~v~t~  369 (928)
T PF04762_consen  313 NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK----------------------PLRLHVLTS  369 (928)
T ss_pred             CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC----------------------CCEEEEEec
Confidence            99999999988666 9999888764  222222  22223335555442                      234555555


Q ss_pred             CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782          273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  352 (882)
Q Consensus       273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  352 (882)
                      +|.+..++..-...                     ......|.+...+++-....+.+-.+....   ...+........
T Consensus       370 ~g~~~~~~~~~~v~---------------------~s~~~~~~D~g~vaVIDG~~lllTpf~~a~---VPPPMs~~~l~~  425 (928)
T PF04762_consen  370 NGQYEIYDFAWDVS---------------------RSPGSSPNDNGTVAVIDGNKLLLTPFRRAV---VPPPMSSYELEL  425 (928)
T ss_pred             CCcEEEEEEEEEEE---------------------ecCCCCccCceEEEEEeCCeEEEecccccC---CCchHhceEEcC
Confidence            55555444321100                     000112334445555555555554433221   111222233344


Q ss_pred             CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--------eeee----------CCCcceEEeeeeeecCCCEEE
Q 002782          353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLA----------GHSEIVLCLDTCALSSGKILI  414 (882)
Q Consensus       353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--------~~~~----------~~~~~v~~~~~~~~~~~~~~l  414 (882)
                      ...|.+++|.+.... +++-..+|.+.+|........        ..+.          .....+..+.  +..++.. +
T Consensus       426 ~~~v~~vaf~~~~~~-~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~  501 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSR-FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA--WLNDDTL-L  501 (928)
T ss_pred             CCCcEEEEEeCCCCe-EEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE--EeCCCEE-E
Confidence            578999999885444 888888899999985432211        1111          1122344444  5555554 3


Q ss_pred             EEeec---CCeEEEEeCCCc---eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782          415 VTGSK---DNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  488 (882)
Q Consensus       415 ~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  488 (882)
                      +....   ...+.+++....   ........-.+.+..+...+... .++.-..+|.+...+.......         ..
T Consensus       502 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~~~~~---------~~  571 (928)
T PF04762_consen  502 VLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDGELSQ---------IV  571 (928)
T ss_pred             EEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCCCccc---------cc
Confidence            33333   357777776432   22233333345555555555543 4666677888886655433110         01


Q ss_pred             hhhhcCCCeeEEEEcCCC-c-EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          489 VVAAHGKDINSLAVAPND-S-LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       489 ~~~~~~~~i~~~~~s~~~-~-~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      .+......+..+.+.... + .++.-+..|.+++    ++..+      ...++++.+.  +.+|+.......+++.++.
T Consensus       572 ~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l------a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  572 KFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL------ASNCTSFAVT--DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             cCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE------ecCCceEEEE--cCEEEEEecCceEEEEECc
Confidence            111111122222222222 1 3333333343332    11221      2557777775  5566666667788888886

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=5e-09  Score=107.33  Aligned_cols=114  Identities=19%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCe
Q 002782           71 DDKLLFSSGHS-----REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA----------DRKVLVWDVDGGF  135 (882)
Q Consensus        71 d~~~las~~~d-----g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~----------dg~v~vwd~~~~~  135 (882)
                      ++.++.+....     ++|.+.|..+++.+.++..-..+-. + +||||+.|+++..          +..|.|||..+.+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            44555544332     8999999999999999886555443 4 9999999887765          6889999999999


Q ss_pred             EEEEeecCC-------CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC
Q 002782          136 CTHYFKGHK-------GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK  186 (882)
Q Consensus       136 ~~~~~~~h~-------~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~  186 (882)
                      .+..+.-..       .....++++||++..+++--+.+..|.+.|+.+++.+..+.-
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            998876321       223477889987752222224478899999998888877653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=3.1e-11  Score=115.50  Aligned_cols=254  Identities=22%  Similarity=0.332  Sum_probs=177.4

Q ss_pred             CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-----EEeeeeccc------------ccEEEEEEccCCC-cEE
Q 002782          396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL  457 (882)
Q Consensus       396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~s~~~~-~~l  457 (882)
                      .+.+.++.  +...|.+ |++|..+|.|.++.-....     ....++.|.            ..|..+.|.++++ ..+
T Consensus        25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            45677777  8889998 9999999999999644321     233344443            3577888877654 356


Q ss_pred             EEeeCCCeEEEEecCCCCCCCC--------Cc---cc---------------ccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782          458 VSGSSDHTIKVWSFDGLSDDAE--------QP---MN---------------LKAKAVVAAHGKDINSLAVAPNDSLVCT  511 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~~~~--------~~---~~---------------~~~~~~~~~~~~~i~~~~~s~~~~~la~  511 (882)
                      +..+.|.+|++|.+........        .+   ..               ........+|...|+++.++.|+..+.+
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            7778999999999865422110        00   00               0011223568888999999999998888


Q ss_pred             EcCCCcEEEEeCCCc---eeEEEEeccc-----CceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCcee----eEe----
Q 002782          512 GSQDRTACVWRLPDL---VSVVTFRGHK-----RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTF----  574 (882)
Q Consensus       512 ~s~dg~i~iwd~~~~---~~~~~~~~h~-----~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~----~~~----  574 (882)
                      +. |=.|-+|+++-.   -.+..+++++     .-|++..|+|. .+.++-.+..|+|++-|++...+-    +.|    
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            74 678999998633   2333444443     34889999995 467777888899999999843211    111    


Q ss_pred             --------ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc-CCCeeEEEeccCC------------Cce---EEEEEcC
Q 002782          575 --------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHE------------DKI---WALAVGK  630 (882)
Q Consensus       575 --------~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~s~  630 (882)
                              .+--.+|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|.            +.|   ..++|+.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                    122356889999999999998554 58999999 4667777776653            222   4578999


Q ss_pred             CCCEEEEEeCCCCEEEEECCCHHH
Q 002782          631 KTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       631 ~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      ++.+++||+....+++++...+..
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             CcceEecccccceEEEecCCCCcc
Confidence            999999999999999999666544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.36  E-value=8.1e-09  Score=103.42  Aligned_cols=200  Identities=15%  Similarity=0.156  Sum_probs=148.7

Q ss_pred             cccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecC---C---C-----ccEEEEE-EcC-CCCEEEEEe
Q 002782           13 EPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEG---G---S-----DTITALA-LSP-DDKLLFSSG   79 (882)
Q Consensus        13 ~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~---~---~-----~~I~~l~-~sp-d~~~las~~   79 (882)
                      +..+.-+|.   =-.+.||+.++...++.|.+||+.+..+...--+   .   .     .+..-+. |++ +|.++|..+
T Consensus       263 HTnFtdYY~---R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS  339 (668)
T COG4946         263 HTNFTDYYP---RNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS  339 (668)
T ss_pred             cCCchhccc---cccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence            334445554   3457899999999999999999988764332111   1   0     0111111 333 688888887


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCc
Q 002782           80 HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR-KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK  158 (882)
Q Consensus        80 ~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg-~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~  158 (882)
                      + |...|.+...+-.+..  +|.+.|.-..+..++.-++.|..|| .+-|+|.++++. ..+.+.-+.|.++..+++|+.
T Consensus       340 R-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~  415 (668)
T COG4946         340 R-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKK  415 (668)
T ss_pred             c-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcE
Confidence            6 6777777655554442  4678899999998888899999998 899999999884 455667889999999999876


Q ss_pred             cEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC----eEEEEecCCce
Q 002782          159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK----VVNLWDLRDYS  221 (882)
Q Consensus       159 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~vwd~~~~~  221 (882)
                        ++.+.....+.+.|+.++.....=+...+-|+.+.|+|++++++-+--+|    .|+++|+..++
T Consensus       416 --~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         416 --VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             --EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence              88888889999999999987766667778999999999999999876555    46666665543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.36  E-value=6.4e-11  Score=113.56  Aligned_cols=340  Identities=19%  Similarity=0.236  Sum_probs=211.6

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcE
Q 002782           93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATV  170 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I  170 (882)
                      ..++.++||...|.+...-|-..-+++.+.|.+++||-- ++++.-..+. .-..+++++.+.++...  |+.|-..|++
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~--L~vg~~ngtv   92 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR--LYVGQDNGTV   92 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE--EEEEEecceE
Confidence            456678899999999888888888999999999999954 3333222221 23567889999886554  9999999999


Q ss_pred             EEEECC----CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccc
Q 002782          171 RVWDLL----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS  246 (882)
Q Consensus       171 ~vwd~~----~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (882)
                      .-+.+.    ....++....|.+.+..+.|+....++++.+.|..+.---.+.+..+...                    
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y--------------------  152 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY--------------------  152 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------------------
Confidence            988664    34455666789999999999999999999999986543222211110000                    


Q ss_pred             ccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCC
Q 002782          247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ  326 (882)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (882)
                                         .+.+                                          .......        
T Consensus       153 -------------------~~~~------------------------------------------~~t~~~~--------  163 (404)
T KOG1409|consen  153 -------------------NFET------------------------------------------PASALQF--------  163 (404)
T ss_pred             -------------------Eeec------------------------------------------cCCCCce--------
Confidence                               0000                                          0000000        


Q ss_pred             eEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe--CCCceeeeeeeCCCcceEEeee
Q 002782          327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD--LSSMSCSYVLAGHSEIVLCLDT  404 (882)
Q Consensus       327 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d--~~~~~~~~~~~~~~~~v~~~~~  404 (882)
                                     .              ..         +..+|...|.+....  ......+..+.+|.+.+.++. 
T Consensus       164 ---------------d--------------~~---------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~-  204 (404)
T KOG1409|consen  164 ---------------D--------------AL---------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK-  204 (404)
T ss_pred             ---------------e--------------eE---------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE-
Confidence                           0              00         111222223333322  233445668889999999998 


Q ss_pred             eeecCCCEEEEEeecCCeEEEEeCCCceE-EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc-
Q 002782          405 CALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM-  482 (882)
Q Consensus       405 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-  482 (882)
                       +.+.... +.+|..|..+.+||+..++- ...+.+|...|..+...+--. .+++++.||.|.+|+++........-. 
T Consensus       205 -Wd~~~~~-LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl~  281 (404)
T KOG1409|consen  205 -WDPGQRL-LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWLD  281 (404)
T ss_pred             -EcCCCcE-EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCccccc
Confidence             6676665 99999999999999986553 345778999998888776644 699999999999999876532211100 


Q ss_pred             -----------cccchhh-------hhhc----CCCeeEEEEcCCCcEEEEEcCCCcEEEEe--------CCCceeEEEE
Q 002782          483 -----------NLKAKAV-------VAAH----GKDINSLAVAPNDSLVCTGSQDRTACVWR--------LPDLVSVVTF  532 (882)
Q Consensus       483 -----------~~~~~~~-------~~~~----~~~i~~~~~s~~~~~la~~s~dg~i~iwd--------~~~~~~~~~~  532 (882)
                                 .......       +..|    -+...+..-+.+.....+-+..-.+++-|        .+. .++..+
T Consensus       282 s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~p  360 (404)
T KOG1409|consen  282 SDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIP  360 (404)
T ss_pred             cchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCC-Cccccc
Confidence                       0000000       0001    01111111111211222222222334333        222 334444


Q ss_pred             ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       533 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ..-..+|+.+.+..+-.+|+|++.|..|+|||+.
T Consensus       361 hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~  394 (404)
T KOG1409|consen  361 HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVR  394 (404)
T ss_pred             cccccceeEEEhhhhccceeecCCceEEEEEech
Confidence            4445679999999888999999999999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=1e-08  Score=108.56  Aligned_cols=225  Identities=15%  Similarity=0.143  Sum_probs=134.6

Q ss_pred             EEEeCCCCcEEEEEE-cCCcEEEEeCCC-ceeeee---ee----------CCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782          359 LKFLGEEEQYLAVAT-NIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKILIVTGSKDNSV  423 (882)
Q Consensus       359 ~~~~~~~~~~l~~~~-~~~~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  423 (882)
                      +++.+ ++++++++. .+|.+.++++.. +.....   +.          .......++.  +.|+++.++++.-....|
T Consensus        92 i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   92 IAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSEEEEEETTTTEE
T ss_pred             EEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCEEEEEecCCCEE
Confidence            34343 444444443 478888888875 333222   11          1123455666  889999867766667789


Q ss_pred             EEEeCCCce--EEe--ee-ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782          424 RLWDSESRC--CVG--VG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  498 (882)
Q Consensus       424 ~iwd~~~~~--~~~--~~-~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (882)
                      .+|++....  ...  .+ ......-..++|+|+++.+.++.-.+++|.++++..................-........
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  221  22 2345567899999999877777788999999998832211100000000000011123678


Q ss_pred             EEEEcCCCcEEEEEc-CCCcEEEEeCC--Cc--eeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEEec--CCCce
Q 002782          499 SLAVAPNDSLVCTGS-QDRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI--SDGSC  570 (882)
Q Consensus       499 ~~~~s~~~~~la~~s-~dg~i~iwd~~--~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~--~~~~~  570 (882)
                      .++++|||++|.++. ..++|.+|++.  ++  +.+..+.........++++|+|++|+++. .++.|.+|++  .+|.+
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            899999999888765 45679999983  23  44444444455589999999999999886 5678999976  45554


Q ss_pred             eeEee-cCcCCEEEEEE
Q 002782          571 LKTFE-GHTSSVLRASF  586 (882)
Q Consensus       571 ~~~~~-~h~~~v~~~~~  586 (882)
                      ...-. .......|+.|
T Consensus       329 ~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  329 TPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEEESSSEEEEEE
T ss_pred             EEecccccCCCCEEEeC
Confidence            33321 23345555655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.34  E-value=2.3e-09  Score=115.94  Aligned_cols=307  Identities=14%  Similarity=0.065  Sum_probs=183.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 002782           72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL  151 (882)
Q Consensus        72 ~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~  151 (882)
                      +..+++++.+|.|.-+|..+|+.+.............+.  ++..++.++.++.+..+|..+|+.+...... +.+.+..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence            668888989999999999999998876644332222222  4667888889999999999999988765532 2222211


Q ss_pred             EecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceE-----EEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782          152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT-----SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV  226 (882)
Q Consensus       152 f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~-----~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  226 (882)
                      ...+ +  .++.++.+|.|..||..+|+.+.........+.     +..+.  +..++.+..+|.+..+|..+++.....
T Consensus       142 ~v~~-~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       142 LVAN-G--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEEC-C--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence            1112 3  377778899999999999998776654322111     11121  246778888899999999888766543


Q ss_pred             cCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcc
Q 002782          227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG  306 (882)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (882)
                      .......       ........ ..     ...-......+++++.+|.+..||..++........              
T Consensus       217 ~~~~~~g-------~~~~~~~~-~~-----~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--------------  269 (377)
T TIGR03300       217 RVALPKG-------RTELERLV-DV-----DGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--------------  269 (377)
T ss_pred             ccccCCC-------CCchhhhh-cc-----CCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--------------
Confidence            3211000       00000000 00     000000123566677788888888776633211100              


Q ss_pred             eeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc
Q 002782          307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  386 (882)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  386 (882)
                                                                 ...    .....   .+..+.+++.+|.+..+|..++
T Consensus       270 -------------------------------------------~~~----~~p~~---~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       270 -------------------------------------------SSY----QGPAV---DDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             -------------------------------------------CCc----cCceE---eCCEEEEECCCCeEEEEECCCC
Confidence                                                       000    00000   3345666677788888888887


Q ss_pred             eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782          387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI  466 (882)
Q Consensus       387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i  466 (882)
                      +..............-   ....+.. +++++.+|.++++|..+++.+.....+...+..--...++  .|+.++.||.|
T Consensus       300 ~~~W~~~~~~~~~~ss---p~i~g~~-l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~--~l~v~~~dG~l  373 (377)
T TIGR03300       300 SELWKNDELKYRQLTA---PAVVGGY-LVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD--GLLVQTRDGDL  373 (377)
T ss_pred             cEEEccccccCCcccc---CEEECCE-EEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC--EEEEEeCCceE
Confidence            7654442211111110   1123455 7888999999999999999998887666543332222333  47888999988


Q ss_pred             EEE
Q 002782          467 KVW  469 (882)
Q Consensus       467 ~~w  469 (882)
                      ..|
T Consensus       374 ~~~  376 (377)
T TIGR03300       374 YAF  376 (377)
T ss_pred             EEe
Confidence            765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3e-10  Score=123.13  Aligned_cols=197  Identities=19%  Similarity=0.146  Sum_probs=127.5

Q ss_pred             ceEEccCCCEEE--EEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 002782           24 PLVVSSDGSFIA--CACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL   92 (882)
Q Consensus        24 ~va~s~dg~~la--~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~   92 (882)
                      .-+|||||+.++  +.+.    ..|.+.++.+|+...... ........+|||||+.||..+.     +..+.+|++.++
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g  267 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG  267 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence            357999997532  2332    269999999887543322 3334567899999999887553     223445777653


Q ss_pred             ---eeEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782           93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVW--DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus        93 ---~~~~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vw--d~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs  165 (882)
                         ...+...++.+.....+|+|||+.|+..+ .+|...+|  ++.. +.....+..+...+....|+||++. ++++..
T Consensus       268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~-Laf~~~  346 (428)
T PRK01029        268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK-IAFCSV  346 (428)
T ss_pred             CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE-EEEEEc
Confidence               33333333334456789999999888766 45654555  4432 3334455555567788999999875 233333


Q ss_pred             CC--CcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC---CCeEEEEecCCceee
Q 002782          166 DD--ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCK  223 (882)
Q Consensus       166 ~d--g~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~  223 (882)
                      .+  ..|.+||+.+++... +......+....|+|||+.|+....   ...|.+|++.+++..
T Consensus       347 ~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        347 IKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            32  469999999887654 3333345778999999998875543   357888898776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=4.5e-10  Score=123.78  Aligned_cols=234  Identities=17%  Similarity=0.112  Sum_probs=151.8

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      ..|.++|..... ...+..+...+....  ++|+|+.++++...+  ..|++||+.++..... ..+.+.+.+++|+|++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDG  245 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence            357777875443 344555666677776  899999844443322  4799999998765433 3345566778999999


Q ss_pred             CcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCcee
Q 002782          454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS  528 (882)
Q Consensus       454 ~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~  528 (882)
                      +.++++.+.++  .|.+|++.+...           ..+..+........|+|||+.|+..+. ++  .|+++|+.+++.
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~-----------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQL-----------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCE-----------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            86666666655  477777765421           111223333456789999998876654 33  588888877654


Q ss_pred             EEEEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC---eE
Q 002782          529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LV  602 (882)
Q Consensus       529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i  602 (882)
                       ..+..+...+....|+|+|++++.++.++   .|.+||+.++... .+..+ .......|+|||++|+..+.++   .+
T Consensus       315 -~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l  391 (417)
T TIGR02800       315 -RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVL  391 (417)
T ss_pred             -EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence             34444556677889999999999888776   7999998876443 23222 2234568999999988877754   45


Q ss_pred             EEEEcCCCeeEEEeccCCCceEEEEE
Q 002782          603 KLWTVRTGECIATYDKHEDKIWALAV  628 (882)
Q Consensus       603 ~iwd~~~~~~~~~~~~h~~~v~~l~~  628 (882)
                      .+.+. +|.....+..+.+.+..++|
T Consensus       392 ~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       392 GLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEC-CCceeeECCCCCCCcCCCCC
Confidence            55553 45555555544445544444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=6.6e-10  Score=121.54  Aligned_cols=235  Identities=14%  Similarity=0.085  Sum_probs=147.8

Q ss_pred             cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC--eEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  454 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~  454 (882)
                      .+.++|...... +.+..+...+.+..  ++|+|+.++++...++  .|.+||+.+++.... ....+.....+|+|+|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence            566667655433 34444555666666  8999998555544443  588889988765332 22223345689999999


Q ss_pred             cEEEEeeCCCe--EEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeE
Q 002782          455 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV  529 (882)
Q Consensus       455 ~~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~  529 (882)
                      .++++.+.++.  |.++|+.+..           ...+..+.......+|+|||+.++..+. ++  .|+++|+.+++..
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            77677777776  5566665431           1111223345567899999998876553 33  4777788777543


Q ss_pred             EEEecccCceEEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC-C--eEE
Q 002782          530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK  603 (882)
Q Consensus       530 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g--~i~  603 (882)
                      . +..........+|+|||++|+..+.+ +  .|.++|+.++... .+... .......|+|||++|+..+.+ |  .+.
T Consensus       344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        344 R-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             E-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            3 22122223457899999988876553 3  4566788777543 22222 112245799999988776654 3  477


Q ss_pred             EEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          604 LWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       604 iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                      +++. +|.....+..+.+.+...+|+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCccCC
Confidence            7786 6777777776667777788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=8.1e-10  Score=121.67  Aligned_cols=235  Identities=13%  Similarity=0.046  Sum_probs=150.2

Q ss_pred             cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  454 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~  454 (882)
                      .|.++|...+.. ..+..+...+....  ++|+|+.++++...+  ..|.+||+.++..... ....+.+....|+|+|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence            477777765543 34555666777777  899999844544333  4688999988865433 22334455789999998


Q ss_pred             cEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeE
Q 002782          455 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV  529 (882)
Q Consensus       455 ~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~  529 (882)
                      .++++.+.+|  .|.+||+.+...           ..+..+........|+|||+.++..+. ++  .|+++++.+++..
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            6666666666  577778765421           111223334567889999998776653 33  5778888777643


Q ss_pred             EEEecccCceEEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEE
Q 002782          530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVK  603 (882)
Q Consensus       530 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~  603 (882)
                      .. ...........|+|||+.|+..+.+ +  .|.+||+.++.... +. +........|+|||++++..+.+   ..|.
T Consensus       325 ~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        325 RV-TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             Ee-ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            32 2222334467899999999877643 2  58889998876432 22 11222346899999998777654   3577


Q ss_pred             EEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          604 LWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       604 iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                      ++++. |.....+..+.+.+...+|+|
T Consensus       402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        402 LVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEECC-CCceEECcCCCCCcCCCccCC
Confidence            77774 444445555566677777776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=4.4e-08  Score=103.72  Aligned_cols=291  Identities=14%  Similarity=0.150  Sum_probs=174.5

Q ss_pred             CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc----CCcEEEEeCCCc--ee--eeeeeCCCc
Q 002782          326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE  397 (882)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~--~~~~~~~~~  397 (882)
                      +.|..|.+.....   .+..... ........-+++.+ ++++|.+...    .+.|..|.+...  ..  +........
T Consensus        13 ~gI~~~~~d~~~g---~l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   13 GGIYVFRFDEETG---TLTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             TEEEEEEEETTTT---EEEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             CcEEEEEEcCCCC---CceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence            5666666643322   2222222 11223344566666 5566666655    578888887653  33  222222222


Q ss_pred             ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-ceEEee---ee----------cccccEEEEEEccCCCcEEEEeeCC
Q 002782          398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD  463 (882)
Q Consensus       398 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~v~~s~~~~~~l~s~~~d  463 (882)
                      ....+.  ..++++.++++...+|.+.++++.. +.....   ..          .......++.++|+++.++++.-..
T Consensus        88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            333344  7899999666667899999999986 433322   11          1234578899999998666666566


Q ss_pred             CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCC--Cce--eEEEEecc---
Q 002782          464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLV--SVVTFRGH---  535 (882)
Q Consensus       464 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~--~~~--~~~~~~~h---  535 (882)
                      ..|.+|++.........     ..............++|+|+++++.+. -.+++|.++++.  ++.  .+..+...   
T Consensus       166 D~v~~~~~~~~~~~l~~-----~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTP-----VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             TEEEEEEE-TTS-TEEE-----EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             CEEEEEEEeCCCceEEE-----eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            78999998764311100     111122345667899999999887655 457789999988  432  33333321   


Q ss_pred             ---cCceEEEEEcCCCCEEEEee-CCCcEEEEecC--CCc--eeeEeecCcCCEEEEEEEeCCCEEEEeec-CCeEEEEE
Q 002782          536 ---KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWT  606 (882)
Q Consensus       536 ---~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd  606 (882)
                         ......|+++|||++|+++. .+.+|.+|+++  ++.  .+..+.........+.++|+|++|+++.. ++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence               12578999999999888765 56789999994  333  33444434455889999999999988875 56899987


Q ss_pred             c--CCCeeEEEec-cCCCceEEEEE
Q 002782          607 V--RTGECIATYD-KHEDKIWALAV  628 (882)
Q Consensus       607 ~--~~~~~~~~~~-~h~~~v~~l~~  628 (882)
                      +  ++|.+...-. ..-....|+.|
T Consensus       321 ~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  321 IDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EeCCCCcEEEecccccCCCCEEEeC
Confidence            6  4676544432 12344455554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=5.8e-09  Score=112.85  Aligned_cols=264  Identities=13%  Similarity=0.041  Sum_probs=154.2

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE-
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG-  445 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-  445 (882)
                      ..+++++.++.+..+|..+++......... .+.+..  .. .+.. ++.++.+|.+..||..+++.+.........+. 
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p--~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP--LV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC--EE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            344455555666666666665544333221 121111  11 2344 66677789999999998887766543322111 


Q ss_pred             ----EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCe-eEEEEcCCCcEEEEEcCCCcEEE
Q 002782          446 ----AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDSLVCTGSQDRTACV  520 (882)
Q Consensus       446 ----~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~la~~s~dg~i~i  520 (882)
                          +..+. + . .++.+..++.+..+|..++...-..................+ .+..+  .+..+.+++.+|.+..
T Consensus       181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA  255 (377)
T ss_pred             cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence                11111 2 2 567778888998888876532110000000000000000000 01111  2457777888999999


Q ss_pred             EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEEEEeecC
Q 002782          521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCGAD  599 (882)
Q Consensus       521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~d  599 (882)
                      ||..+++.+-.....  ......  .++..+++++.||.+..+|..+|+.+......... .....  ..+..|++++.+
T Consensus       256 ~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~  329 (377)
T TIGR03300       256 LDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFE  329 (377)
T ss_pred             EECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCC
Confidence            999999877655421  111222  24678888889999999999999887665322111 11111  246789999999


Q ss_pred             CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782          600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  647 (882)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  647 (882)
                      |.|.++|..+|+.+..+..+...+++--...++ .|+.++.||.|..|
T Consensus       330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       330 GYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            999999999999999988666554443223344 48888999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.4e-09  Score=119.02  Aligned_cols=183  Identities=20%  Similarity=0.226  Sum_probs=118.2

Q ss_pred             cCCceEEccCCCEEEEEeCC----eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCe
Q 002782           21 GGGPLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-S--REIRVWDLSTLK   93 (882)
Q Consensus        21 ~g~~va~s~dg~~la~~~~~----~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~-d--g~i~iwd~~~~~   93 (882)
                      +|..-+|+....++....++    .|.++|...... +.+..+...+.+.+|||||+.|+..+. +  ..|.+||+.+++
T Consensus       175 tG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~  253 (448)
T PRK04792        175 TGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV  253 (448)
T ss_pred             cCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence            44445555444444443332    577888765544 445556778899999999999987643 3  368999998886


Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCc--EEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCC--
Q 002782           94 CLRSWKGHDGPAIGMACHPSGGLLATA-GADRK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--  168 (882)
Q Consensus        94 ~~~~~~~h~~~V~~l~fs~~~~~lasg-~~dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg--  168 (882)
                      ... +....+.....+|+|||+.|+.. +.++.  |.+||+.++.. ..+..+.......+|+||++. ++++...+|  
T Consensus       254 ~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~  330 (448)
T PRK04792        254 REK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKS-LIFTSERGGKP  330 (448)
T ss_pred             eEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCE-EEEEECCCCCc
Confidence            533 22223344578999999988764 45554  88889988764 344556666778899999775 334444444  


Q ss_pred             cEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782          169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR  208 (882)
Q Consensus       169 ~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~  208 (882)
                      .|.++|+.+++... +..+.......+|+|||++|+..+.
T Consensus       331 ~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        331 QIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             eEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence            46666777776433 2222222345689999998877654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.28  E-value=1.3e-08  Score=104.21  Aligned_cols=248  Identities=13%  Similarity=0.089  Sum_probs=161.4

Q ss_pred             cccccccccCCceEEccCCCEEEEEeC-----------CeEEEEEcCCCceeeeecCCCc-------cEEEEEEcCCCCE
Q 002782           13 EPVLQQFYGGGPLVVSSDGSFIACACG-----------ESINIVDLSNASIKSTIEGGSD-------TITALALSPDDKL   74 (882)
Q Consensus        13 ~~~~~~~y~g~~va~s~dg~~la~~~~-----------~~I~i~d~~~~~~~~~l~~~~~-------~I~~l~~spd~~~   74 (882)
                      ...++.-+.++-+ +||||+.|++++.           +.|.+||+.+++.+..+.....       .-..+++||||++
T Consensus        40 ~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        40 LGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             EEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence            3444444444444 9999999998887           4899999999999988874322       2348999999999


Q ss_pred             EEEEe-C-CCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeE-EEEee-cCC--CcE
Q 002782           75 LFSSG-H-SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFC-THYFK-GHK--GVV  147 (882)
Q Consensus        75 las~~-~-dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~-~~~~-~~~~~-~h~--~~V  147 (882)
                      |++.. . +..|.+.|+.+++.+..+.... +..-...++++.++.  +.||......++ +|+. ..... .+.  .++
T Consensus       119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v  195 (352)
T TIGR02658       119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL  195 (352)
T ss_pred             EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence            99875 3 7899999999999999887532 333333333332211  234433333222 1221 11111 011  000


Q ss_pred             -EEEEEec-CCCccEEEEEeCCCcEEEEECCCC-----eEEEEecC-------cccceEEEEEccCCCEEEEEe------
Q 002782          148 -SSILFHP-DTDKSLLFSGSDDATVRVWDLLAK-----KCVATLDK-------HFSRVTSMAITSDGSTLISAG------  207 (882)
Q Consensus       148 -~~l~f~~-~~~~~~l~sgs~dg~I~vwd~~~~-----~~~~~l~~-------h~~~v~~l~~s~~~~~l~s~~------  207 (882)
                       ..-.|.+ ++.  +++.... |.|.+.|+...     ..+..+..       ..+.+..+++++++++++...      
T Consensus       196 ~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       196 INHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             ccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence             0014556 543  2444444 99999996443     33333211       234455699999999988843      


Q ss_pred             ----CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782          208 ----RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  283 (882)
Q Consensus       208 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~  283 (882)
                          ..+.|.++|..+.+.+..++.......+.+.+++..                     ..+++.+.++.|.++|..+
T Consensus       273 thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp---------------------~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       273 THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP---------------------LLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe---------------------EEEEeCCCCCcEEEEECcC
Confidence                225899999999999999999999999999999851                     2345566789999999988


Q ss_pred             ceeee
Q 002782          284 ACLYE  288 (882)
Q Consensus       284 ~~~~~  288 (882)
                      +....
T Consensus       332 ~k~i~  336 (352)
T TIGR02658       332 GKELS  336 (352)
T ss_pred             CeEEe
Confidence            85443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.27  E-value=1.8e-09  Score=118.96  Aligned_cols=175  Identities=23%  Similarity=0.237  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL  117 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l  117 (882)
                      .|.++|...+.. +.+..+...+.+.+|||||++||.+...   ..|++||+.+++... +..+.+.+.+++|+|||+.|
T Consensus       171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            588999864443 4455566778999999999999987643   479999999886543 33455677789999999987


Q ss_pred             EEE-eCC--CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CCC--cEEEEECCCCeEEEEecCcccce
Q 002782          118 ATA-GAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DDA--TVRVWDLLAKKCVATLDKHFSRV  191 (882)
Q Consensus       118 asg-~~d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~dg--~I~vwd~~~~~~~~~l~~h~~~v  191 (882)
                      +.. +.+  ..|.+||+.++... .+..+........|+||++.  |+..+ .++  .|.+||+.+++.. .+..+...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence            754 433  45999999887643 44445555667789998765  44443 333  5888888776643 444455667


Q ss_pred             EEEEEccCCCEEEEEeCCC---eEEEEecCCce
Q 002782          192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYS  221 (882)
Q Consensus       192 ~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~  221 (882)
                      ....|+|+|++++.++.++   .|.+||+.+..
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            7889999999999988776   78899987743

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.4e-09  Score=117.88  Aligned_cols=220  Identities=11%  Similarity=0.028  Sum_probs=136.5

Q ss_pred             CeEEEEeCCCceEEeeeecccccEEEEEEccCCCc--EEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782          421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  496 (882)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~--~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (882)
                      ..|.+.|...+.... +.........-.|+|+|+.  ++++...+|  .|.+.++.++..           ..+......
T Consensus       165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~~g~  232 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILALQGN  232 (428)
T ss_pred             ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecCCCC
Confidence            367777776654433 3334556677899999875  333444444  466666654421           111112334


Q ss_pred             eeEEEEcCCCcEEEEEcC-CC----cEEEEeCCCc---eeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEE--ec
Q 002782          497 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI  565 (882)
Q Consensus       497 i~~~~~s~~~~~la~~s~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iw--d~  565 (882)
                      ....+|||||+.|+..+. +|    .+.+|++..+   .......++.......+|+|||+.|+..+ .+|...+|  ++
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            456899999988886543 22    3444676652   33333333333456789999999877665 45655555  44


Q ss_pred             CC-CceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC-
Q 002782          566 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-  640 (882)
Q Consensus       566 ~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-  640 (882)
                      .. +.....+..+...+....|+|||++|+..+.+   ..|.+||+.+++...... ....+....|+|||++|+.... 
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC
Confidence            32 33344454455566778999999999876653   379999999887654333 3345677899999998875433 


Q ss_pred             --CCCEEEEECCCHH
Q 002782          641 --DALVNLWHDSTAA  653 (882)
Q Consensus       641 --dg~i~iw~~~~~~  653 (882)
                        ...|.+|++.+++
T Consensus       392 ~g~~~L~~vdl~~g~  406 (428)
T PRK01029        392 SNESELYLISLITKK  406 (428)
T ss_pred             CCCceEEEEECCCCC
Confidence              3457788876653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.3e-09  Score=120.11  Aligned_cols=190  Identities=22%  Similarity=0.164  Sum_probs=128.0

Q ss_pred             ceEEccCCCEEEEEeCC----eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeeEE
Q 002782           24 PLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSR--EIRVWDLSTLKCLR   96 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~----~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las-~~~dg--~i~iwd~~~~~~~~   96 (882)
                      ..+|||||+.|++...+    .|.+||+.+++... +....+.+.+.+|||||+.|+. ...+|  .|.+||+.+++.. 
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-  280 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-  280 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence            56899999999887632    69999999887644 3333345567999999998874 44444  6888899887654 


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCC--cEE
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGA-D--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--TVR  171 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~-d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg--~I~  171 (882)
                      .+..+........|+|||+.|+..+. +  ..|.++|+.++.... +...........|+|+++. ++++...++  .|.
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~-i~~~~~~~~~~~l~  358 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT-LVMVHRQDGNFHVA  358 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE-EEEEEccCCceEEE
Confidence            45556666777899999998887663 2  368888888876433 2222233445789999875 333333333  588


Q ss_pred             EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC---CeEEEEecCC
Q 002782          172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD---KVVNLWDLRD  219 (882)
Q Consensus       172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~  219 (882)
                      +||+.+++... +.. ........|+|+|+.++..+.+   ..+.++++..
T Consensus       359 ~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        359 AQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            89998876533 321 2223356899999998877643   3466666643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.7e-10  Score=132.58  Aligned_cols=197  Identities=18%  Similarity=0.281  Sum_probs=153.5

Q ss_pred             CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  472 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~  472 (882)
                      -+-..+.++.  ..|.... .++|+.||.+++|....+..+..+. +....|+.+.|+.+|+ -+..+..||.+.+|...
T Consensus      2206 ~~v~~v~r~~--sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMT--SHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             cccCceeeec--CCCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccC
Confidence            3445566776  5566665 8999999999999998887766554 3348899999999987 57788899999999986


Q ss_pred             CCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc---CCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC
Q 002782          473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD  548 (882)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s---~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~  548 (882)
                      ..           +....+.|......+.|-.  ..+++++   .++.+.+||..-. ..-..-..|..+++++++.|..
T Consensus      2282 pk-----------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2282 PK-----------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             Cc-----------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence            32           4445567888888888865  5666654   5678999996322 1112226799999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782          549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  617 (882)
Q Consensus       549 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  617 (882)
                      ++|++|+.+|.|++||++..+.+++++.         +. ...++++|+..|.++||++.....+.++.
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999999999999988877777753         33 56799999999999999999887777665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=4.5e-09  Score=99.01  Aligned_cols=273  Identities=19%  Similarity=0.231  Sum_probs=175.2

Q ss_pred             eCCeEEEEEecccccccceeeeeeeecccCCceEEEEEe--CCCCc-EEEEEEcCCcEEEEeCCCceeeeeeeCCCc---
Q 002782          324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL--GEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAGHSE---  397 (882)
Q Consensus       324 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---  397 (882)
                      ..|.+.+|++.........    .........+.++.|.  +.++. .++.+...|.|.++..........+.+-..   
T Consensus        44 R~Gkl~Lys~~d~~~~~l~----~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLD----TLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccCccc----eeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence            3456666766554322100    0111122334445542  23344 566777789999998765444444433211   


Q ss_pred             ceE-EeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe--eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          398 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       398 ~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                      .+. ++..-+.+.+.. ++++..+|.+.+-+........  ..+.|.-..+...|+...++++.+|+.|+.+..||++..
T Consensus       120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence            122 333337787877 8888889999866655554443  688999999999999888889999999999999999832


Q ss_pred             CCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCC--E
Q 002782          475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQ--V  550 (882)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~--~  550 (882)
                      ..        ........|...|.++.-+| .+.++++|+.|-.|++||.++. +++..-. -.++||.+..+|...  +
T Consensus       199 ~~--------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  199 KT--------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             cc--------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHH
Confidence            11        01222456888899998887 5789999999999999999854 4443322 458899999999543  4


Q ss_pred             EEEeeCCCcEEEEecCCC--c---eeeEeecCcCCEEEEEEEeCCCEEEEeec-CCeEE-EEEcCCCe
Q 002782          551 VITASGDKTIKIWSISDG--S---CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVK-LWTVRTGE  611 (882)
Q Consensus       551 l~s~~~d~~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~-iwd~~~~~  611 (882)
                      |+++-.+ -.+|-+...+  +   .+.....|.+-+..-.|......|+|++. |..++ +|-.-+++
T Consensus       270 L~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  270 LAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             HHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            4444443 3677776554  2   34555667776766677544557888653 66544 66544443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2.4e-07  Score=90.95  Aligned_cols=268  Identities=10%  Similarity=0.112  Sum_probs=171.2

Q ss_pred             CCcEEEEeCCCceeee---eeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEEEEeCCC--ceEEe--eeecccccEE
Q 002782          375 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSES--RCCVG--VGTGHMGAVG  445 (882)
Q Consensus       375 ~~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~--~~~~~--~~~~~~~~v~  445 (882)
                      +..|++|++.+..-..   .+-.+.+.++-+.  +.++++.+.+....  +|.|-.|.+..  |+...  .......+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            5789999887432211   2234555666676  88888873333333  56777766553  54332  2223334448


Q ss_pred             EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC----------CeeEEEEcCCCcEEEEEcCC
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----------DINSLAVAPNDSLVCTGSQD  515 (882)
Q Consensus       446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~la~~s~d  515 (882)
                      .++++++++.++.+.-.-|.|.++.+.......       .......|..          .+.+..+.|++++|++.+..
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence            899999988444444456899999986532111       1111111222          27788999999999887532


Q ss_pred             -CcEEEEeCCCceeEEEEe---cccCceEEEEEcCCCCEEEEeeC-CCcEEEEecCCC----ceeeEeec------CcCC
Q 002782          516 -RTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG----SCLKTFEG------HTSS  580 (882)
Q Consensus       516 -g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~----~~~~~~~~------h~~~  580 (882)
                       -.|.+|++..+.....-.   ....+...|.|+|++++.....+ +++|-+|.....    ++++++..      -...
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence             359999999775543221   24566889999999998887664 899999998873    22332211      2345


Q ss_pred             EEEEEEEeCCCEEEEeec-CCeEEEEEcCC--Cee--EEEeccCCCceEEEEEcCCCCEEEEEeCC-CCEEEEECCC
Q 002782          581 VLRASFLTRGAQIVSCGA-DGLVKLWTVRT--GEC--IATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDST  651 (882)
Q Consensus       581 v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iw~~~~  651 (882)
                      ...+.+++||++|.++.. ...|-+|.+..  |+.  +.....+...-....|+++|++|++++.+ ..|.+|.+..
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            677889999999987755 23788887764  322  22233344445778999999999988875 4588887664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.14  E-value=4e-08  Score=93.32  Aligned_cols=205  Identities=21%  Similarity=0.261  Sum_probs=139.3

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCC--ceeeeecCC---CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNA--SIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~--~~~~~l~~~---~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~   98 (882)
                      .++.++||++||+..+..|.|-..++.  ..+.....+   .-.-.-++||||+.+||.+...|+|+++|+.. ..+..+
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            378899999999999999999877654  233333222   22457899999999999999999999999865 333344


Q ss_pred             ec-------CCCCEEEEEEcCCC---C---EEEEEeCCCcEEEEECCC-----CeEEEEee---cCCCcEEEEEEecCCC
Q 002782           99 KG-------HDGPAIGMACHPSG---G---LLATAGADRKVLVWDVDG-----GFCTHYFK---GHKGVVSSILFHPDTD  157 (882)
Q Consensus        99 ~~-------h~~~V~~l~fs~~~---~---~lasg~~dg~v~vwd~~~-----~~~~~~~~---~h~~~V~~l~f~~~~~  157 (882)
                      ..       -...|..|.|-+..   +   -|.+-..+|.++=+-+..     ....+.+.   .+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            32       23567778786532   1   344555677777766532     23344444   3577899999999743


Q ss_pred             ccEEEEEeCCC----------cEEEEECCCCeEEEE--------------------e---------cCcccceEEEEEcc
Q 002782          158 KSLLFSGSDDA----------TVRVWDLLAKKCVAT--------------------L---------DKHFSRVTSMAITS  198 (882)
Q Consensus       158 ~~~l~sgs~dg----------~I~vwd~~~~~~~~~--------------------l---------~~h~~~v~~l~~s~  198 (882)
                       .+++.|....          -+..|.+-++.+-..                    +         ....+.|..|..||
T Consensus       161 -LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  161 -LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             -EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence             4444443322          367787644321100                    0         11245788999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782          199 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       199 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      ||+.|++...+|.|.+|++....+.......+
T Consensus       240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            99999999999999999999887766655443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=4.6e-08  Score=117.09  Aligned_cols=253  Identities=13%  Similarity=0.097  Sum_probs=163.4

Q ss_pred             EEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--C------------CcceEEeeeeeecCCCEEEEEeecCCe
Q 002782          357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS  422 (882)
Q Consensus       357 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~~~~l~~~~~dg~  422 (882)
                      ..+++.+.++.++++-+.++.|+++|..... ...+.+  .            -.....++  +.++++.+.++-..++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence            3566666667777777888999999986543 322222  1            11234555  66777764555566788


Q ss_pred             EEEEeCCCceEEeeee-cc---------------cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC--C--cc
Q 002782          423 VRLWDSESRCCVGVGT-GH---------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE--Q--PM  482 (882)
Q Consensus       423 i~iwd~~~~~~~~~~~-~~---------------~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~--~~  482 (882)
                      |+.+|..++....... +.               ...-..++++|++..++++.+.++.|++||.........  .  ..
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999988765432211 00               123457899996666778888899999999765421000  0  00


Q ss_pred             cccchhhhhhcCCCeeEEEEcCCCc-EEEEEcCCCcEEEEeCCCceeEEEEec---------------------ccCceE
Q 002782          483 NLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW  540 (882)
Q Consensus       483 ~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~~~~~~~~~---------------------h~~~v~  540 (882)
                      ...........-.....++++|+++ ++++.+.++.|++||+.++.......+                     .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            0000000001123457899999998 555566778999999987643211100                     011346


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-------------cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782          541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       541 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      .++++++|.++++-+.++.|++||..++.......             +.-.....++++++|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            89999999998998999999999998776543221             12235778999999998888888999999999


Q ss_pred             CCCee
Q 002782          608 RTGEC  612 (882)
Q Consensus       608 ~~~~~  612 (882)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=3.5e-08  Score=118.06  Aligned_cols=246  Identities=14%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeee-c------------ccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-G------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  472 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~  472 (882)
                      ..+.+..++++-+.++.|++||........... +            +-.....+++.+++..++++-..++.|+.+|+.
T Consensus       575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence            445555557777888899999986543322211 1            112357889998876455555667889999876


Q ss_pred             CCCCCC-----CCccccc--chhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEEEEecc---------
Q 002782          473 GLSDDA-----EQPMNLK--AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGH---------  535 (882)
Q Consensus       473 ~~~~~~-----~~~~~~~--~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h---------  535 (882)
                      +.....     .......  ..... ..-.....++++| ++.++++.+.++.|++||..++... .+.+.         
T Consensus       655 ~~~V~tlag~G~~g~~~~gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~  732 (1057)
T PLN02919        655 NETVRTLAGNGTKGSDYQGGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS  732 (1057)
T ss_pred             CCEEEEEeccCcccCCCCCChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence            431000     0000000  00000 0012346899999 5677777788899999998876442 22211         


Q ss_pred             ------cCceEEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeEe-------------ec--------CcCCEEEEEEE
Q 002782          536 ------KRGIWSVEFSPVDQV-VITASGDKTIKIWSISDGSCLKTF-------------EG--------HTSSVLRASFL  587 (882)
Q Consensus       536 ------~~~v~~l~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-------------~~--------h~~~v~~~~~s  587 (882)
                            -...+.++|+|++.. +++-+.++.|++||+.++......             -.        .-.....++++
T Consensus       733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd  812 (1057)
T PLN02919        733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA  812 (1057)
T ss_pred             ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence                  124567999999984 455566799999999876532111             00        01134678999


Q ss_pred             eCCCEEEEeecCCeEEEEEcCCCeeEEEec-------------cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          588 TRGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       588 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      ++|..+++-..++.|++||..++.......             +.-.....++++++|+.+++.+.++.|++|+..++.
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            999988888889999999998877653321             112356789999999999999999999999998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=2.5e-10  Score=131.26  Aligned_cols=186  Identities=18%  Similarity=0.366  Sum_probs=151.8

Q ss_pred             ccCCCEEEEEeCC-eEEEEEcCCCceeeeecC-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCE
Q 002782           28 SSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPA  105 (882)
Q Consensus        28 s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~-~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V  105 (882)
                      +|.-.+.++|+++ .|++|....+..+..++. ....|+.+.|+..|+....+..||.+.+|... .++...++.|+...
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL 2295 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccc
Confidence            3555566666655 899999988888776652 34789999999999999999999999999986 67788889999999


Q ss_pred             EEEEEcCCCCEEEEEe---CCCcEEEEECCC---CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782          106 IGMACHPSGGLLATAG---ADRKVLVWDVDG---GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK  179 (882)
Q Consensus       106 ~~l~fs~~~~~lasg~---~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~  179 (882)
                      ..+.|-.  ..+++++   .++.+.+||.--   ..+++  ..|.+.++++++.|.  ..+|++|+.+|.|++||+...+
T Consensus      2296 ~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~--~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2296 SDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             cceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc--ceEEEecCCcCcEEEeehHHHH
Confidence            9999886  5677765   568999999732   23444  789999999999995  4569999999999999999888


Q ss_pred             EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782          180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       180 ~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      .+++++.         +. ...++++++..|.++||++.....+.+++...
T Consensus      2370 l~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2370 LRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             HHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            7766654         33 56689999999999999999888777776544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=2.2e-10  Score=116.21  Aligned_cols=171  Identities=17%  Similarity=0.289  Sum_probs=133.6

Q ss_pred             eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 002782           53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS-------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK  125 (882)
Q Consensus        53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~-------~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~  125 (882)
                      +..+.||.+.|.+++--.+.+-+++++.|.+|++|.+.       +..+..++..|+.+|..+.|-.+.++++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            45678999999999887788889999999999999985       334777788999999999999999988875  788


Q ss_pred             EEEEECCCCeEEEEee--cCCCcEEEEEEecCC-CccEEEEEeCCCcEEEEECCCCeEEEEe-----cCcccceEEEEEc
Q 002782          126 VLVWDVDGGFCTHYFK--GHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAIT  197 (882)
Q Consensus       126 v~vwd~~~~~~~~~~~--~h~~~V~~l~f~~~~-~~~~l~sgs~dg~I~vwd~~~~~~~~~l-----~~h~~~v~~l~~s  197 (882)
                      |.+||.--|+.+....  ...+.+..+...|+- ...+++.++...+|+++|.+.+.....+     .+..+-+.++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999998877665332  123334444445553 3333444488999999999988766555     3445678999999


Q ss_pred             cCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782          198 SDGSTLISAGRDKVVNLWDLRDYSCKLT  225 (882)
Q Consensus       198 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~  225 (882)
                      +.|+.++.+-.+|.|.+.|.+++..+..
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceecc
Confidence            9999999999999999999998876543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=5.9e-07  Score=88.27  Aligned_cols=180  Identities=16%  Similarity=0.196  Sum_probs=122.5

Q ss_pred             CCeEEEEEcCCC--cee-eeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeeEE--EeecCCCCEEEE
Q 002782           39 GESINIVDLSNA--SIK-STIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLST--LKCLR--SWKGHDGPAIGM  108 (882)
Q Consensus        39 ~~~I~i~d~~~~--~~~-~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~--~~~~~--~~~~h~~~V~~l  108 (882)
                      +..|.+|++.+.  +.- ..+-.+.+..+-|+|+|++++|.++-.   .|.|.-|.+..  |++..  .......+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            447999988733  211 122235667899999999999988754   57787777764  54332  222223444889


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE--eecCCCc----------EEEEEEecCCCccEEEEEe-CCCcEEEE
Q 002782          109 ACHPSGGLLATAGA-DRKVLVWDVDG-GFCTHY--FKGHKGV----------VSSILFHPDTDKSLLFSGS-DDATVRVW  173 (882)
Q Consensus       109 ~fs~~~~~lasg~~-dg~v~vwd~~~-~~~~~~--~~~h~~~----------V~~l~f~~~~~~~~l~sgs-~dg~I~vw  173 (882)
                      +++++|++|+++.. .|.|.|+-+.. |.....  ...|.+.          +....|.|+++.  |++.. .--.|.+|
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~--l~v~DLG~Dri~~y  172 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY--LVVPDLGTDRIFLY  172 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE--EEEeecCCceEEEE
Confidence            99999999999874 48999999854 433222  1234444          888899998765  44443 23359999


Q ss_pred             ECCCCeEEEEec---CcccceEEEEEccCCCEEEEEe-CCCeEEEEecCCc
Q 002782          174 DLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDY  220 (882)
Q Consensus       174 d~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~  220 (882)
                      ++..|+....-.   ........|.|+|++++.++.+ -+++|.+|.....
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            999776432211   2345678899999999988776 5899999998764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.03  E-value=2.4e-09  Score=105.56  Aligned_cols=157  Identities=25%  Similarity=0.365  Sum_probs=115.2

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEcCCCc----eeeeecCCCccEEEEEEcCCCCEEEE---EeCCCcEEEEECCCCeeE
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDLSNAS----IKSTIEGGSDTITALALSPDDKLLFS---SGHSREIRVWDLSTLKCL   95 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~----~~~~l~~~~~~I~~l~~spd~~~las---~~~dg~i~iwd~~~~~~~   95 (882)
                      .+..+++|+++|++..+ ...+++.....    .+....... .-+++.|..+.....+   ++....+.+|....+. .
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-C  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC-c
Confidence            67788999999999887 55566654332    222222222 2244444444444444   4555667777776644 3


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      ..+-||-..++.++|+||+++++++..|..|+|-....-..+..+- ||..-|..++..++.   .|++||.|++|++||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKTLRLWD  221 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCcEEEEe
Confidence            4456799999999999999999999999999998887766665554 799999999998752   389999999999999


Q ss_pred             CCCCeEEEEec
Q 002782          175 LLAKKCVATLD  185 (882)
Q Consensus       175 ~~~~~~~~~l~  185 (882)
                      +.+|+++.++.
T Consensus       222 ~~sgk~L~t~d  232 (390)
T KOG3914|consen  222 ITSGKLLDTCD  232 (390)
T ss_pred             cccCCcccccc
Confidence            99999886653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=6.5e-09  Score=109.58  Aligned_cols=203  Identities=20%  Similarity=0.293  Sum_probs=149.0

Q ss_pred             cccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCC--CEEEEEeCCCcEEEEECC
Q 002782           15 VLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDD--KLLFSSGHSREIRVWDLS   90 (882)
Q Consensus        15 ~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~--~~las~~~dg~i~iwd~~   90 (882)
                      ++..--.-+++.++|.|+-+|.+..-.+.|.|+...-....+-.|  .-.|-...|||..  .+-++......-.+|++.
T Consensus        20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence            333333345899999999999999888888888654322222223  3457778888754  344555555677799985


Q ss_pred             C---CeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782           91 T---LKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus        91 ~---~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs  165 (882)
                      .   ...-..+.+|...|+.+-|.|... .||+++.|..+..||+.+. ..+..+..-...-+.++|+.....  +.+.+
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~--vlass  177 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN--VLASS  177 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc--hhhhc
Confidence            3   345556789999999999999654 7899999999999999875 445555555566778889865443  55666


Q ss_pred             CCCcEEEEECCCC-eEEEEecCcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCC
Q 002782          166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       166 ~dg~I~vwd~~~~-~~~~~l~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~  219 (882)
                      ....|++||+..| .++..+++|...|.++.|.. ....+.+++.||+|+.||...
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            7778999999865 47788899999999998864 334678899999999999764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.01  E-value=1e-07  Score=88.72  Aligned_cols=217  Identities=17%  Similarity=0.073  Sum_probs=147.4

Q ss_pred             EEEEeecCCeEEEEeCCCce-EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782          413 LIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  491 (882)
Q Consensus       413 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  491 (882)
                      .++.|+..|...+|...+.+ .+.....|...|+-+.-.-+...-+..++.|.++++.++......            ..
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------------~~  153 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------------FA  153 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------------ce
Confidence            38999999999999998654 333344454444333222222334778889999999998764211            11


Q ss_pred             hcCC--CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce-e-EE-EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          492 AHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-S-VV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       492 ~~~~--~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~-~-~~-~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      .|..  ..+++++++|++++++.+....|..|.++... . .. ........-.+..|+..+..+|+++.||++.|||++
T Consensus       154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence            2322  37899999999999999999999999987542 2 22 223344556788999999999999999999999998


Q ss_pred             CCcee-----eEeecCcCCEEEEEEEeCCC--EEEEeecCCeEEEEEcCCCeeEEEecc-------CCC-ceEEEEEcCC
Q 002782          567 DGSCL-----KTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HED-KIWALAVGKK  631 (882)
Q Consensus       567 ~~~~~-----~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~-~v~~l~~s~~  631 (882)
                      .....     .+-..|.+.+..+.|++-|.  +|+..-.-+.+.+-|++++.-.+.+.-       |.. .|..-.|+.+
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence            65332     22345889999999998664  455544557899999999875554432       222 2666666666


Q ss_pred             CCEEEEEeCC
Q 002782          632 TEMFATGGSD  641 (882)
Q Consensus       632 ~~~l~s~~~d  641 (882)
                      +.-+.+...+
T Consensus       314 n~s~~v~~e~  323 (344)
T KOG4532|consen  314 NESNDVKNEL  323 (344)
T ss_pred             Ccccccccch
Confidence            6555444433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.2e-06  Score=93.18  Aligned_cols=213  Identities=16%  Similarity=0.198  Sum_probs=140.9

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-----eEEEEecCCCCCCCCC
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQ  480 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~  480 (882)
                      +.+.+.. ++.|+.+|.|.+.+-. -+.+..+.++...+...-+.-+++++|++.+.|+     .+++|+++....... 
T Consensus        31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-  107 (933)
T KOG2114|consen   31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-  107 (933)
T ss_pred             EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence            4466666 9999999998877633 2233556666666333344455566888887765     489999987642221 


Q ss_pred             cccc---cchh-hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC----CceeEEEEecccCceEEEEEcCCCCEEE
Q 002782          481 PMNL---KAKA-VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVI  552 (882)
Q Consensus       481 ~~~~---~~~~-~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~  552 (882)
                      |.-.   .... .......++.+++++.+-+.+|+|-.+|.|..+.-+    .+....-......+|+.+++..+++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            1111   1111 112245688999999999999999999999988532    1222222233567899999999988733


Q ss_pred             EeeCCCcEEEEecCCCc-eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCc
Q 002782          553 TASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDK  622 (882)
Q Consensus       553 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~  622 (882)
                      -+..-..|.+|.+.... .+..+..|..++.|..|++....+++++. ..+.+|+.+.-..-.++. +|...
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence            33344679999998444 25557788889999999876665665554 569999987655556665 55544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=5.1e-08  Score=92.07  Aligned_cols=192  Identities=15%  Similarity=0.227  Sum_probs=138.0

Q ss_pred             EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee--EEEEe
Q 002782          456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFR  533 (882)
Q Consensus       456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~--~~~~~  533 (882)
                      .++-+..+|.|.++.........    .+.......-......++.|++.+..++++..+|.+.+-+......  .+.++
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~----~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk  162 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSV----HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK  162 (339)
T ss_pred             eeeeccccceEEEEeeccceeee----eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc
Confidence            46667778889888765432100    1111111111111356789999999999999999999766655544  34888


Q ss_pred             cccCceEEEEEcCC-CCEEEEeeCCCcEEEEecC-CCceeeE-eecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEcC-
Q 002782          534 GHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS-DGSCLKT-FEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVR-  608 (882)
Q Consensus       534 ~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~-  608 (882)
                      +|.-+.|...|+.. .+++.+|+.|+.+..||++ .++++.. ..-|...|.++.-+| ++.++++|+.|..|++||.+ 
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            99999999999864 4688999999999999998 4455544 456888998887775 67899999999999999998 


Q ss_pred             CCeeEEEeccCCCceEEEEEcCCC--CEEEEEeCCCCEEEEECCCHH
Q 002782          609 TGECIATYDKHEDKIWALAVGKKT--EMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       609 ~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      -++++..-. -.+.||.+..+|.-  ..|+++..+| .+|-+.....
T Consensus       243 m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~  287 (339)
T KOG0280|consen  243 MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV  287 (339)
T ss_pred             ccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence            467766544 34899999999854  3566666666 4666665543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=9.1e-08  Score=89.08  Aligned_cols=232  Identities=11%  Similarity=0.044  Sum_probs=151.4

Q ss_pred             CCcEEEEEEcCCcEEEEeCCCceee-eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccccc
Q 002782          365 EEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA  443 (882)
Q Consensus       365 ~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  443 (882)
                      ...+|+.|+..|...+|...+.+.. +....|...|.-..  -.-+...-+..++.|.++++.++..+..........-.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~  160 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT  160 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence            4568999999999999999865543 33334444333222  11122222667788888888887765443332222233


Q ss_pred             EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782          444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  523 (882)
Q Consensus       444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~  523 (882)
                      +.+++++++++ ++++.+....|.+|.++...+...       ..........-.+..|+.....+|++++||++.|||+
T Consensus       161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~-------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIE-------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceee-------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence            78899999987 788888889999999876532111       1112223344578899999999999999999999999


Q ss_pred             CCceeEE-----EEecccCceEEEEEcCCCC--EEEEeeCCCcEEEEecCCCceeeEee-------cCcC-CEEEEEEEe
Q 002782          524 PDLVSVV-----TFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFE-------GHTS-SVLRASFLT  588 (882)
Q Consensus       524 ~~~~~~~-----~~~~h~~~v~~l~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~-~v~~~~~s~  588 (882)
                      +......     +-..|++.+..+.|++-|.  +|+..-.-+.+.+-|++++.-.+.+.       .|.. .|....|+.
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence            8753322     2234889999999998654  45555555789999999986654433       2322 366677777


Q ss_pred             CCCEEEEeecCCeEEEEEc
Q 002782          589 RGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       589 ~g~~l~s~~~dg~i~iwd~  607 (882)
                      ++.-..+...+. +.=|++
T Consensus       313 ~n~s~~v~~e~~-~ae~ni  330 (344)
T KOG4532|consen  313 ENESNDVKNELQ-GAEYNI  330 (344)
T ss_pred             CCcccccccchh-hheeec
Confidence            666555544432 333444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.99  E-value=4.2e-07  Score=98.69  Aligned_cols=150  Identities=8%  Similarity=-0.003  Sum_probs=92.3

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCc----------cE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782           31 GSFIACAC-GESINIVDLSNASIKSTIEGGSD----------TI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        31 g~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~----------~I-~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~   98 (882)
                      +..++++. .+.+.-+|..+|+.+-.......          .+ ..++.  ++..+++++.+|.+.-+|.++|+.+.+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            33455544 45889999999998755543210          00 01111  3556778888999999999999988877


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEE-EEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS-ILFHPDTDKSLLFSGSDDATVRVWDLLA  177 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~-l~f~~~~~~~~l~sgs~dg~I~vwd~~~  177 (882)
                      +...........  .+..++.++.++.+.-+|..+|+.+.........+.. ..-+|--....++.++.+|.+..+|..+
T Consensus       147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            643221111112  2346667778899999999999988776532111100 0001110011267778899999999998


Q ss_pred             CeEEEEe
Q 002782          178 KKCVATL  184 (882)
Q Consensus       178 ~~~~~~l  184 (882)
                      |+.+...
T Consensus       225 G~~~W~~  231 (394)
T PRK11138        225 GQLIWQQ  231 (394)
T ss_pred             Chhhhee
Confidence            8865543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=5.9e-08  Score=104.03  Aligned_cols=308  Identities=16%  Similarity=0.170  Sum_probs=174.7

Q ss_pred             EEEEEcCCCCEEEEEe----CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782          106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       106 ~~l~fs~~~~~lasg~----~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~  181 (882)
                      +-..|+|...++|+++    ..|.|.||- ++|++..... ..-.+++++|+|.  ..+|+.|-.-|.+.+|...+.+.-
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCceee
Confidence            4457888888888876    347788774 4444322211 2334677999995  466999999999999999888877


Q ss_pred             EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec-----CcceeeEEEe--cCCCC------------
Q 002782          182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVEAVCA--IPPGS------------  242 (882)
Q Consensus       182 ~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~--~~~~~------------  242 (882)
                      .....|..+|..+.||++|..|+++..-|.|.+|..+....++..+     ..+.+.-.++  .+++.            
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg  174 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG  174 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence            7778899999999999999999999999999999987443333222     2222222222  22211            


Q ss_pred             ---Ccccccccchh---hhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782          243 ---AFDSFLSSYNQ---QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN  316 (882)
Q Consensus       243 ---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (882)
                         .+.......+.   .............|+.++.+|+|...|-...+....+ .            +....+.|.+..
T Consensus       175 De~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k-~------------dS~vQmLf~~~~  241 (1416)
T KOG3617|consen  175 DESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHK-L------------DSEVQMLFMGYC  241 (1416)
T ss_pred             chhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEE-c------------cchHHHHHhccc
Confidence               11111111101   1111112224567888888998888775544221100 0            111233455666


Q ss_pred             CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc---EEEEEEcCCcEEEEeCCCceeeeeee
Q 002782          317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSMSCSYVLA  393 (882)
Q Consensus       317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~~  393 (882)
                      ..++++..+-.+.++-......              ...+..+..+...+.   -++++-..|.++      .....-+ 
T Consensus       242 eai~~i~e~lr~~l~~v~~~G~--------------~ee~~~vk~sgk~GgrqGgiA~sEssGvLr------~~eKyg~-  300 (1416)
T KOG3617|consen  242 EAISIIIEFLRDCLIFVLAKGT--------------SEERCAVKVSGKLGGRQGGIACSESSGVLR------KSEKYGL-  300 (1416)
T ss_pred             ceEEEEeeeceeeEEEecCCCc--------------hHHhhhhhhccccCCccCcccccccccccc------CCcchhh-
Confidence            6677777776666665543221              111111111111110   133333333111      1111111 


Q ss_pred             CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-------eEEee---eecccccEEEEEEccCCC
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGV---GTGHMGAVGAVAFSKKLQ  454 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~---~~~~~~~v~~v~~s~~~~  454 (882)
                      .....++|+.  +...+.. +..|.+.|.+.+|--...       .-...   .....+.|+.+.|.|-.+
T Consensus       301 e~ge~~~c~c--Y~~~~~~-l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~  368 (1416)
T KOG3617|consen  301 ELGEGILCMC--YGEKEIR-LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS  368 (1416)
T ss_pred             hcCCceEEEE--EeccceE-EEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc
Confidence            1234577776  6666665 899999999999943221       11222   223457889999988644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.2e-07  Score=102.23  Aligned_cols=178  Identities=8%  Similarity=0.058  Sum_probs=118.3

Q ss_pred             ceEEccCCCE-EEEEe-C---CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eC--CCcEEEEECCCCeeE
Q 002782           24 PLVVSSDGSF-IACAC-G---ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GH--SREIRVWDLSTLKCL   95 (882)
Q Consensus        24 ~va~s~dg~~-la~~~-~---~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~--dg~i~iwd~~~~~~~   95 (882)
                      ...|||||+. +++.. .   ..|.++|+.+|+...... ..+...+.+|||||+.|+.. +.  +..|.++|+.++.. 
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-  269 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-  269 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence            4679999985 66533 2   269999999998655443 44556778899999887754 33  35788889888764 


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC-----
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-----  167 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d-----  167 (882)
                      +.+..+........|+|||+.|+..+..   ..|.+.|+.++........ ..  ....|+||++. ++++....     
T Consensus       270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~-Ia~~~~~~~~~~~  345 (419)
T PRK04043        270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNY-IVYSSRETNNEFG  345 (419)
T ss_pred             EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCE-EEEEEcCCCcccC
Confidence            3444444434556899999988887632   3688889988876433221 11  12489999876 33333332     


Q ss_pred             ---CcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          168 ---ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       168 ---g~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                         ..|.+.|+.++... .+... .......|+|||+.++....+
T Consensus       346 ~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        346 KNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             CCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence               36888898887643 34333 233468899999988776543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=4.5e-09  Score=106.84  Aligned_cols=249  Identities=15%  Similarity=0.217  Sum_probs=174.6

Q ss_pred             eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-------ceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782          390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  462 (882)
Q Consensus       390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~  462 (882)
                      ..+.||...|..+.  ...+.+. ++++++|.+|++|.+..       ..+..++..|..+|..+.|-.+.+ .+  ++-
T Consensus       729 ~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~Sc  802 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASC  802 (1034)
T ss_pred             ecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eec
Confidence            35678999988886  5556666 99999999999998753       346677889999999999988855 34  456


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE-EEEcCCCcEEEEeCCCceeEEEEec-----cc
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTFRG-----HK  536 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~s~dg~i~iwd~~~~~~~~~~~~-----h~  536 (882)
                      ||.|.+||---+..-.     ........+..+.|.|+.- -+..++ |.++...+|+++|.+.++-...++.     .+
T Consensus       803 D~giHlWDPFigr~La-----q~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLA-----QMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             cCcceeecccccchhH-----hhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            8899999954331100     0000001111223333321 133344 4447889999999999877666653     34


Q ss_pred             CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEE-EEcCCCeeEEE
Q 002782          537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIAT  615 (882)
Q Consensus       537 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~i-wd~~~~~~~~~  615 (882)
                      .-+.+++..+.|+.++++-.+|.|.+.|.++|+.+..++.-......++- |..+.|+....|.++.+ |..-+|....+
T Consensus       877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeec
Confidence            56889999999999999999999999999999999887755544444433 56678888888999999 98888877766


Q ss_pred             eccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       616 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      ......+..-+  -.-|.-|+++.....+.+|....+.
T Consensus       956 ~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~  991 (1034)
T KOG4190|consen  956 DKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAEL  991 (1034)
T ss_pred             cCCCCcchhhh--hccCceeEEeccCcEEEEEecchhh
Confidence            66444432222  1246678888888889999876543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=6.4e-09  Score=102.64  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=106.6

Q ss_pred             EEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE---cCCCcEEEEeCC
Q 002782          448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG---SQDRTACVWRLP  524 (882)
Q Consensus       448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~---s~dg~i~iwd~~  524 (882)
                      ..++.++ +++.+..+....++++.....    .........   -....+++.|..+.....++   +....+.+|...
T Consensus        69 ~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   69 LTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            3444444 666666666666666554321    000001111   11223445554444444444   344455666655


Q ss_pred             CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEE
Q 002782          525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVK  603 (882)
Q Consensus       525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~  603 (882)
                      .+. ...+-||-+.++.++|+||+++|+++..|..|++-....--.+..| -||..-|..++.-++ ..|+|+|.|++|+
T Consensus       141 ~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  141 SGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR  218 (390)
T ss_pred             ccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence            533 3445679999999999999999999999999999887665555555 479999999998765 4589999999999


Q ss_pred             EEEcCCCeeEEEec
Q 002782          604 LWTVRTGECIATYD  617 (882)
Q Consensus       604 iwd~~~~~~~~~~~  617 (882)
                      +||+.+|+++.+++
T Consensus       219 ~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  219 LWDITSGKLLDTCD  232 (390)
T ss_pred             EEecccCCcccccc
Confidence            99999999887664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.94  E-value=3e-08  Score=93.96  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=167.1

Q ss_pred             CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-----EEeeeeccc------------ccEEEEEEcc-CCCcEE
Q 002782          396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSK-KLQNFL  457 (882)
Q Consensus       396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~s~-~~~~~l  457 (882)
                      .+.|+++.  +...|.+ +++|.+.|.|.+|.-....     ....+++|.            ..|..+.|.. .+.+.+
T Consensus        26 ad~ItaVe--fd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVE--FDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEE--eccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            34566666  6677776 9999999999999765432     112244443            3567777754 445567


Q ss_pred             EEeeCCCeEEEEecCCCCC----------CCCCcc----------------------cccch-hhhhhcCCCeeEEEEcC
Q 002782          458 VSGSSDHTIKVWSFDGLSD----------DAEQPM----------------------NLKAK-AVVAAHGKDINSLAVAP  504 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~----------~~~~~~----------------------~~~~~-~~~~~~~~~i~~~~~s~  504 (882)
                      +..+.|++|++|.+.....          ....+.                      ...+. ....+|...|+++.|..
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            7788999999998754310          000000                      00111 12256778899999999


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCc---eeEEEEeccc-----CceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCce-----
Q 002782          505 NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGHK-----RGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC-----  570 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~---~~~~~~~~h~-----~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~-----  570 (882)
                      |...+.++ .|-.|-+|++.-.   -.+..+++|.     .-|++..|+|.. ..+...+..|.|++-|++....     
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            98888776 4678999987633   3344455554     348889999954 4556667779999999973211     


Q ss_pred             -----------eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC-eeEEEeccCC------------Cce---
Q 002782          571 -----------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI---  623 (882)
Q Consensus       571 -----------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~------------~~v---  623 (882)
                                 +.-|.+-..+|..+.|+++|+++++-+. -+|+|||+... .++.++..|.            +.|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence                       1112233467889999999999988655 57999999864 5777775442            233   


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          624 WALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      ..+.||.|...+.+|+.....-++-..
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEEEecCCcccccccccccceeeeccc
Confidence            347889999999999988887777633

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=1.4e-08  Score=107.14  Aligned_cols=277  Identities=17%  Similarity=0.252  Sum_probs=179.6

Q ss_pred             CCcEEEEEEcCCcEEEEeCCC-ceeeeeeeCCCc--ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC---ceEEeeee
Q 002782          365 EEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGT  438 (882)
Q Consensus       365 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~  438 (882)
                      .++-++.++.- .+.+.|+.. +...+.+. |..  .+....+...|.... -++......-.+|++..   ...-..+.
T Consensus        35 ~grdi~lAsr~-gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~aIef~lh  111 (1081)
T KOG0309|consen   35 SGRDIVLASRQ-GLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNAIEFVLH  111 (1081)
T ss_pred             ccchhhhhhhc-CeEEEeccCCCCCceeee-ccCcchhcceecccCCCCce-eEEecCcchhhhhhhhcCCccceEEEEe
Confidence            34445555553 345555543 22222222 222  233333334455555 34444455566888753   33444577


Q ss_pred             cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcE
Q 002782          439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA  518 (882)
Q Consensus       439 ~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i  518 (882)
                      +|...|+.+-|.|+.+.++++++-|-.+..||+.....         +......-...-..+.|+-...-+.+.+..+.|
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCCc---------ceeeeecccccCceeeecccCcchhhhccCCce
Confidence            99999999999999998999999999999999986521         222222233455678888755555556677889


Q ss_pred             EEEeCCCc-eeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCcee-eEeecCcCCEEEEEEEeCCCEEEE
Q 002782          519 CVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTRGAQIVS  595 (882)
Q Consensus       519 ~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s  595 (882)
                      .+||++.+ .++..+++|...|..++|..- ...+.+++.|++|+.||......- ........+|..-++.|-|.-...
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~  262 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI  262 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence            99999865 678889999999999998753 457888999999999998755322 112224456777777775542211


Q ss_pred             e--ec---------CCeEEEEEcCCC-eeEEEeccCCCceEEEEEcCCC----------CEEEEEeCCCCEEEEECCCHH
Q 002782          596 C--GA---------DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKT----------EMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       596 ~--~~---------dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~----------~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      -  -.         +..-..|++.++ +++.+|.+|.+.|....|-..+          -.|+|-+.|..+++|-+....
T Consensus       263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i  342 (1081)
T KOG0309|consen  263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI  342 (1081)
T ss_pred             ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence            1  11         122334555443 6889999999998777664322          269999999999999987654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=7.9e-07  Score=95.81  Aligned_cols=212  Identities=9%  Similarity=0.025  Sum_probs=127.6

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE-EEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI-LIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  452 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~  452 (882)
                      ..|.+-|...........+ . ....-.  ++|+|+. ++++...  +..|.++|+.+++...... ..+......|+|+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence            3555555544433323333 2 444444  8999985 3333332  4578889998887655433 4455667889999


Q ss_pred             CCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCce
Q 002782          453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLV  527 (882)
Q Consensus       453 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~  527 (882)
                      |+.++++.+.++  .|.++++..+.          .. .+..+........|+|||+.|+..+. .+  .|.++|+.+++
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~----------~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKT----------LT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCc----------EE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            987777766554  45566665431          11 11112222334579999988776653 23  58888888776


Q ss_pred             eEEEEecccCceEEEEEcCCCCEEEEeeCC---------CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782          528 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  598 (882)
Q Consensus       528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  598 (882)
                      .........   ....|||||+.|+..+..         ..|.+.|+.++... .+... .......|+|||+.++....
T Consensus       313 ~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        313 VEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             eEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence            643332111   124899999988876643         36888898877643 33322 22335789999998876665


Q ss_pred             CC---eEEEEEcC
Q 002782          599 DG---LVKLWTVR  608 (882)
Q Consensus       599 dg---~i~iwd~~  608 (882)
                      ++   .+.+.++.
T Consensus       388 ~~~~~~L~~~~l~  400 (419)
T PRK04043        388 LGNQSALGIIRLN  400 (419)
T ss_pred             cCCcEEEEEEecC
Confidence            33   35566663

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=3.7e-09  Score=101.67  Aligned_cols=169  Identities=18%  Similarity=0.273  Sum_probs=129.9

Q ss_pred             EEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-
Q 002782          448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-  526 (882)
Q Consensus       448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-  526 (882)
                      +|+-+-..+-++.+.+..+-+-++.++-           ...+ ...++|.++.|...+.++..|..+|.|..+|++.. 
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~-----------~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGH-----------QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccc-----------cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence            4443322234666777778888887652           1122 25568889999998999999999999999999764 


Q ss_pred             ----eeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEecCCCce---eeEeecCcCCEEEEEE--EeCCCEEEEe
Q 002782          527 ----VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF--LTRGAQIVSC  596 (882)
Q Consensus       527 ----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--s~~g~~l~s~  596 (882)
                          .+...+. |.+.|+++..-. ++++|.+.+.+|.|++||++--+|   +.+++||.+.-..+-+  .+....++++
T Consensus       286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence                3444444 899999998776 789999999999999999987777   9999999876555544  4566789999


Q ss_pred             ecCCeEEEEEcCCCeeEEEeccC----CCceEEEEEc
Q 002782          597 GADGLVKLWTVRTGECIATYDKH----EDKIWALAVG  629 (882)
Q Consensus       597 ~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s  629 (882)
                      |.|...+||.++.|..+.++...    +..+++++|.
T Consensus       365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99999999999999999888643    3356777764

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=98.91  E-value=1e-08  Score=91.53  Aligned_cols=126  Identities=16%  Similarity=0.245  Sum_probs=111.6

Q ss_pred             ccchHHHhhhccchHHHHHHHh-hcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHH
Q 002782          668 RGQELENAVLDADYTKAIQVAF-ELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVA  746 (882)
Q Consensus       668 ~~~~~~~~~~~~~~~~a~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~  746 (882)
                      +.+..+.++...+|.+|+..|+ ....|.....++.++.++    ..+..||..+++..+.++|+|+..++++++++.++
T Consensus        21 kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R----~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l   96 (148)
T PF09384_consen   21 KLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRR----GALRAALAGRDEESLEPILKFLIKNITDPRYTRIL   96 (148)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHc----cHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHH
Confidence            4567788999999999999999 777787777777666544    48999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhhe
Q 002782          747 QFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDY  798 (882)
Q Consensus       747 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~  798 (882)
                      ..++..||.+|+ ..+...+.+.+.+..|..-+++..+....|++..++||.
T Consensus        97 ~~v~~~ildiY~-~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~l~G~ld~  147 (148)
T PF09384_consen   97 VDVANIILDIYS-PVIGQSPEVDKLFQKLQRKVQEELQLQKELLELQGMLDM  147 (148)
T ss_pred             HHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            999999999998 667777888889999999999999999999999998875

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=3.1e-06  Score=91.95  Aligned_cols=263  Identities=9%  Similarity=0.035  Sum_probs=152.8

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccE--
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV--  444 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  444 (882)
                      ..+++++.++.+..+|..+++.......... +.+-.  ... +.. ++.+..++.+..+|..+|+.+.........+  
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ssP--~v~-~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSRP--VVS-DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecCC--EEE-CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            3455566667777777777776655443221 21111  112 334 5667778899999999998877655321111  


Q ss_pred             ---EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC-CCeeEEEEcC--CCcEEEEEcCCCcE
Q 002782          445 ---GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-KDINSLAVAP--NDSLVCTGSQDRTA  518 (882)
Q Consensus       445 ---~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~la~~s~dg~i  518 (882)
                         .+.... + . .++.++.++.+..+|..++...-...... .   ...+. .....+..+|  .+..+++++.+|.+
T Consensus       196 ~~~~sP~v~-~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~-~---~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        196 RGESAPATA-F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQ-P---TGATEIDRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             cCCCCCEEE-C-C-EEEEEcCCCEEEEEEccCChhhheecccc-C---CCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence               011111 1 2 46667778888888877653211000000 0   00000 0001111122  24456667788999


Q ss_pred             EEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEEEEee
Q 002782          519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCG  597 (882)
Q Consensus       519 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~  597 (882)
                      ..+|..+++.+-....  .....+.  .++..++.++.+|.+..+|..+|+.+.....-... ......  .+.+|+.++
T Consensus       269 ~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~  342 (394)
T PRK11138        269 VALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD  342 (394)
T ss_pred             EEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence            9999999987654432  1111222  24667888889999999999999877654321111 111112  256788899


Q ss_pred             cCCeEEEEEcCCCeeEEEeccCCCceEE-EEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          598 ADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      .||.|.+.|..+|+.+...+.....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            9999999999999998887654444433 222  3447888899999888764

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=98.83  E-value=6.7e-09  Score=89.09  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=84.0

Q ss_pred             hHHHHHHHHhccCHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHhccCCcchhhcc-cChHhHHhhhccchhhHHHHH
Q 002782          710 AELQIEKALHALGKEEIRQLLEYVREWNT--KPKLCHVAQFVLFQLFNIHPPTEIIEI-KGISDVLEGLIPYTQRHFSRI  786 (882)
Q Consensus       710 ~~~~l~~~~~~l~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~  786 (882)
                      ....++.++..||+.++.+||+|+.+|..  ++.+.+++..|+++||..|+ ..+... +.+.+.|..|+..++++.+.+
T Consensus        14 ~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~-~~l~~~~~~~~~~L~~L~~~l~~~~~~l   92 (110)
T PF04003_consen   14 PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHG-SYLSSSSPELRPVLRSLQKILRERLQNL   92 (110)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            44589999999999999999999999885  77899999999999999999 777777 999999999999999999999


Q ss_pred             HHHHhhh-hhhheecccc
Q 002782          787 DRLVRST-FLLDYTLTGM  803 (882)
Q Consensus       787 ~~l~~~~-~~~~~~~~~~  803 (882)
                      .++++.. +.|+|...+|
T Consensus        93 ~~l~~~n~~~L~~l~~q~  110 (110)
T PF04003_consen   93 SKLLDLNLGRLDYLLSQI  110 (110)
T ss_pred             HHHHHHhHHHHHHHHHhC
Confidence            9999888 8888866543

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.81  E-value=1.2e-05  Score=85.61  Aligned_cols=164  Identities=21%  Similarity=0.201  Sum_probs=98.0

Q ss_pred             ccCCCEEEEEe----------CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002782           28 SSDGSFIACAC----------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS   97 (882)
Q Consensus        28 s~dg~~la~~~----------~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~   97 (882)
                      ||||++++...          .+.+.|+|+++++....... ...+....|||+|+.+|... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            79999998843          34699999999876654443 56788999999999998876 47899999988855432


Q ss_pred             e-ecC----------------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeEEEEeecCC---CcEEEEEEecCC
Q 002782           98 W-KGH----------------DGPAIGMACHPSGGLLATAGAD-RKVLVWDVDGGFCTHYFKGHK---GVVSSILFHPDT  156 (882)
Q Consensus        98 ~-~~h----------------~~~V~~l~fs~~~~~lasg~~d-g~v~vwd~~~~~~~~~~~~h~---~~V~~l~f~~~~  156 (882)
                      - .|-                -+.-.++.|||||++||....| ..|..+.+.      ......   ..+..+.+-.-|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTT
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCC
Confidence            2 220                1123568899999999987643 555554431      111111   134444443223


Q ss_pred             CccEEEEEeCCCcEEEEECCCCeEEE--Ee---cCcccceEEEEEccCCCEEEE
Q 002782          157 DKSLLFSGSDDATVRVWDLLAKKCVA--TL---DKHFSRVTSMAITSDGSTLIS  205 (882)
Q Consensus       157 ~~~~l~sgs~dg~I~vwd~~~~~~~~--~l---~~h~~~v~~l~~s~~~~~l~s  205 (882)
                      ...-.      -.+.|+|+.+++...  ..   ......+..+.|.+++..|+.
T Consensus       153 ~~np~------v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  153 DPNPR------VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             S---E------EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CcCCc------eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            32111      136778888877532  11   233457889999999874433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.80  E-value=2.8e-06  Score=85.43  Aligned_cols=218  Identities=17%  Similarity=0.156  Sum_probs=139.2

Q ss_pred             CCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE
Q 002782           39 GESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL  116 (882)
Q Consensus        39 ~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~  116 (882)
                      .+.|..||..+|+.+-...-.  .....+. ..+++.++++++.++.|..||..+|+.+.++.. ..++.... ..++..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            357899999999988766431  1222222 333567788888999999999999999888775 22222211 224456


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEe-ecCC---CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccc--
Q 002782          117 LATAGADRKVLVWDVDGGFCTHYF-KGHK---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR--  190 (882)
Q Consensus       117 lasg~~dg~v~vwd~~~~~~~~~~-~~h~---~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~--  190 (882)
                      +++++.++.+..+|..+|+.+... ....   ..........+++.  ++.+..++.|..+|+.+|+.+.....+...  
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR--LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE--EEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE--EEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            677778889999999999998884 3321   11222233333343  888888999999999999998777654322  


Q ss_pred             --------eEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccc
Q 002782          191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS  262 (882)
Q Consensus       191 --------v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (882)
                              +.+-....++ .++.++.++.+..+|+.+++.....+ ......... ..                      
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~-~~----------------------  211 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPS-VD----------------------  211 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEE-CC----------------------
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCce-ee----------------------
Confidence                    1222233344 77777777754444999988665443 222222111 11                      


Q ss_pred             cceEEEEEcCCCeEEEEECCCceee
Q 002782          263 LEIHFITVGERGIVRMWNADSACLY  287 (882)
Q Consensus       263 ~~~~~~~~~~~g~v~~w~~~~~~~~  287 (882)
                       ...+++.+.++.+..||..++...
T Consensus       212 -~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  212 -GGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             -CTEEEEEETTTEEEEEETTTTEEE
T ss_pred             -CCEEEEEeCCCEEEEEECCCCCEE
Confidence             125666668999999999998543

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.78  E-value=5.8e-05  Score=70.67  Aligned_cols=200  Identities=16%  Similarity=0.148  Sum_probs=123.7

Q ss_pred             ccccCCceEEccCCCEEEEEe-CC-eEEEEEcCCCceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 002782           18 QFYGGGPLVVSSDGSFIACAC-GE-SINIVDLSNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC   94 (882)
Q Consensus        18 ~~y~g~~va~s~dg~~la~~~-~~-~I~i~d~~~~~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~   94 (882)
                      ..-.+.++.+-+|.+.+++.+ .. .+.-.|..+|...-.- -+..-.-.++.   -|++++.|..+|.+++-+.++|+.
T Consensus         9 kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~   85 (354)
T KOG4649|consen    9 KCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQ   85 (354)
T ss_pred             hhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhh
Confidence            333456778888887655544 33 6778899999876322 22222222232   477899999999999999999988


Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782           95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus        95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      ...+..-..-=.....++++.++..|+.|++...-|..+..++...+...+...+-+..|-...  |+.+...|.|.--.
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s--ly~a~t~G~vlavt  163 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS--LYAAITAGAVLAVT  163 (354)
T ss_pred             eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce--EEEEeccceEEEEc
Confidence            8877654433344567889999999999999999999999999887755554445555553233  55555556555444


Q ss_pred             CCCCeEEEEecCc--ccceEE--EEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782          175 LLAKKCVATLDKH--FSRVTS--MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       175 ~~~~~~~~~l~~h--~~~v~~--l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      .++... .++-.|  .+++.+  ++.   +..+..++-||.+.-++ ..++.+....
T Consensus       164 ~~~~~~-~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  164 KNPYSS-TEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             cCCCCc-ceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            433311 111111  112211  111   33455566677777666 4444444433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.76  E-value=0.00069  Score=77.40  Aligned_cols=285  Identities=14%  Similarity=0.103  Sum_probs=151.5

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCe
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGF  135 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~----~~~~  135 (882)
                      .+.|.++.|..++.-++.+..+|.|.+-|.++..... ...-...|.+++||||+++++..+..+++.+-+-    -..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            4689999999999999999999999999887764322 2224588999999999999999988787766432    2222


Q ss_pred             EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEe----CC-C
Q 002782          136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----RD-K  210 (882)
Q Consensus       136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~----~d-g  210 (882)
                      .+..-....+....+-|-....   -+.|+. |....-+............-.+.=++++|--||+++++..    .+ +
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeT---qfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKET---QFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             ccccccccccccceecccccce---eeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            2211000111222222322111   111111 1111111111100000001122345689999999988742    23 7


Q ss_pred             eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782          211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  290 (882)
Q Consensus       211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~  290 (882)
                      .|++||-+..-.....+....-.++.+-|.|..++                    .+-.-+.++.|.++..++-.-    
T Consensus       223 kirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA--------------------~iq~~~sd~~IvffErNGL~h----  278 (1265)
T KOG1920|consen  223 KIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIA--------------------AIQCKTSDSDIVFFERNGLRH----  278 (1265)
T ss_pred             eEEEecccchhhcccCcccccccceeecCCCCeEe--------------------eeeecCCCCcEEEEecCCccc----
Confidence            89999987222222233333445566666554332                    122233455677766544310    


Q ss_pred             CCceeeeeccCCcCcceeEEEEccCCCcEEEE---EeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc
Q 002782          291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCV---TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ  367 (882)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (882)
                       .....  ..+.....+..+.|..+..-|++.   ..+..+.+|......   ..+......   ..... +.|.|....
T Consensus       279 -g~f~l--~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh---WYLKq~l~~---~~~~~-~~W~p~~~~  348 (1265)
T KOG1920|consen  279 -GEFVL--PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH---WYLKQELQF---SQKAL-LMWDPVTEK  348 (1265)
T ss_pred             -ccccc--CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE---EEEEEEEec---ccccc-ccccCCCce
Confidence             00000  011111226788898888888773   345558898876421   111111111   11111 666666666


Q ss_pred             EEEEEEcCCcEEEEeC
Q 002782          368 YLAVATNIEQVQVYDL  383 (882)
Q Consensus       368 ~l~~~~~~~~i~i~d~  383 (882)
                      .+.+-..+|...+++.
T Consensus       349 ~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  349 TLHVLRESGQRLVRDF  364 (1265)
T ss_pred             eEEEEecCCcEEEEEE
Confidence            6666666677666654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=9e-06  Score=80.38  Aligned_cols=205  Identities=17%  Similarity=0.201  Sum_probs=143.7

Q ss_pred             CCceEEccC-CCEEEEEe--CCeEEEEEcCCCceeeeecCCCcc--EEEEEEcCCCCEEEEE-----eCCCcEEEEECC-
Q 002782           22 GGPLVVSSD-GSFIACAC--GESINIVDLSNASIKSTIEGGSDT--ITALALSPDDKLLFSS-----GHSREIRVWDLS-   90 (882)
Q Consensus        22 g~~va~s~d-g~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~--I~~l~~spd~~~las~-----~~dg~i~iwd~~-   90 (882)
                      |+.++.+|+ +..++++-  +.-..+||..+++..+.+....+.  --.-+|||||++|++.     ...|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            457899994 45555554  337999999999988777543322  1246899999999986     346899999998 


Q ss_pred             CCeeEEEeecCCCCEEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeEEEE--e--ecCCCcEE
Q 002782           91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAG------------------ADRKVLVWDVDGGFCTHY--F--KGHKGVVS  148 (882)
Q Consensus        91 ~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~------------------~dg~v~vwd~~~~~~~~~--~--~~h~~~V~  148 (882)
                      +.+.+..|..|.-.-..+.+.|||+.|+++-                  .+.++..-|..+|..+..  +  .-|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            7788889988877778899999998777752                  134566778888887766  4  23778899


Q ss_pred             EEEEecCCCccEEEEEeCCC-------cEEEEECCCCeEEEEec-------CcccceEEEEEccCCCEEE-EEeCCCeEE
Q 002782          149 SILFHPDTDKSLLFSGSDDA-------TVRVWDLLAKKCVATLD-------KHFSRVTSMAITSDGSTLI-SAGRDKVVN  213 (882)
Q Consensus       149 ~l~f~~~~~~~~l~sgs~dg-------~I~vwd~~~~~~~~~l~-------~h~~~v~~l~~s~~~~~l~-s~~~dg~i~  213 (882)
                      .+++.+++.-  ++..-..|       .|-+++..  ..+..+.       .-.+.+-++++++++.+++ |+-+.+.+.
T Consensus       167 HLa~~~~G~V--~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  167 HLAVDGDGTV--AFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             eEEecCCCcE--EEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            9999987642  33332222       23333322  2222221       2235788999999998775 555788999


Q ss_pred             EEecCCceeeeeecCcc
Q 002782          214 LWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       214 vwd~~~~~~~~~~~~~~  230 (882)
                      +||..++..+...+..+
T Consensus       243 ~~d~~tg~~~~~~~l~D  259 (305)
T PF07433_consen  243 VWDAATGRLLGSVPLPD  259 (305)
T ss_pred             EEECCCCCEeeccccCc
Confidence            99999998887766544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=3.5e-08  Score=95.15  Aligned_cols=155  Identities=20%  Similarity=0.355  Sum_probs=123.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eeEEEeecCCCCE
Q 002782           31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-----KCLRSWKGHDGPA  105 (882)
Q Consensus        31 g~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~-----~~~~~~~~h~~~V  105 (882)
                      |-+.++|....|.+.|++||-.... . ....|.++.|.-.+.++..|.++|.|...|+..+     .+...+- |...|
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~qsf-~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssv  301 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQSF-Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSV  301 (425)
T ss_pred             eeeecccccceeEEEEeeccccccc-c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence            3344455555899999999876443 3 4567899999999999999999999999999765     3444443 88999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782          106 IGMACHP-SGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       106 ~~l~fs~-~~~~lasg~~dg~v~vwd~~~~~~---~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~  181 (882)
                      +++..-. ++++|.+.+-+|.|++||..--++   +..+.||-..-.-+-++-+.....++++++|...++|.+.++..+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            9998877 788899889999999999976666   888888877666666665556667999999999999999999999


Q ss_pred             EEecCcc
Q 002782          182 ATLDKHF  188 (882)
Q Consensus       182 ~~l~~h~  188 (882)
                      .+++...
T Consensus       382 ~tipf~~  388 (425)
T KOG2695|consen  382 CTIPFPY  388 (425)
T ss_pred             eccCCCC
Confidence            8886543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.73  E-value=3e-05  Score=78.16  Aligned_cols=219  Identities=11%  Similarity=0.033  Sum_probs=140.2

Q ss_pred             EEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee
Q 002782          358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG  437 (882)
Q Consensus       358 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  437 (882)
                      +..|.+.++.++.+-...+.|..|+..++.... +....  ...+.  +...+.. ++.+... .+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~--~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMA--FDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEE--EECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEE--EEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence            345666577777777778999999998886653 22222  34443  5523344 4444444 4556699988655444


Q ss_pred             ec-----ccccEEEEEEccCCCcEEEEeeCC--------CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          438 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       438 ~~-----~~~~v~~v~~s~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      ..     .....+.+++.++|. +.++....        |.+..++.. .           ........-...+.++|+|
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence            32     456788999999987 55555433        345555544 1           1111122334568999999


Q ss_pred             CCcEEE-EEcCCCcEEEEeCCCcee----EEEE---ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec
Q 002782          505 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  576 (882)
Q Consensus       505 ~~~~la-~~s~dg~i~iwd~~~~~~----~~~~---~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  576 (882)
                      +++.|+ +-+..+.|..+++.....    ...+   .......-.+++..+|++.++....+.|.+++.+ |+.+..+..
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            998665 667778899998853211    1222   2222247889999999998888888999999976 998888887


Q ss_pred             CcCCEEEEEEE-eCCCEEEEee
Q 002782          577 HTSSVLRASFL-TRGAQIVSCG  597 (882)
Q Consensus       577 h~~~v~~~~~s-~~g~~l~s~~  597 (882)
                      ....+++++|. ++.+.|+..+
T Consensus       223 p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  223 PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEe
Confidence            76789999995 5666665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.9e-06  Score=92.83  Aligned_cols=107  Identities=19%  Similarity=0.214  Sum_probs=87.6

Q ss_pred             ceEEccCCCEEEEEe-----CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782           24 PLVVSSDGSFIACAC-----GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        24 ~va~s~dg~~la~~~-----~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~   98 (882)
                      -..|+|...++|+++     ++.|.||- .+|++.+...- .-.+++++|+|..-.||.|-.-|.+.+|...+.+.....
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence            356788888888775     45788874 57775543321 234578999999999999999999999998887777777


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      ..|..+|..+.||++|..|.++..-|.|.+|...
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            7899999999999999999999999999999886

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=5.3e-07  Score=85.76  Aligned_cols=169  Identities=16%  Similarity=0.191  Sum_probs=113.4

Q ss_pred             eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce---EEeeeecc-----cccEEEEEEccCCCcEEEEeeCCC
Q 002782          393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGH-----MGAVGAVAFSKKLQNFLVSGSSDH  464 (882)
Q Consensus       393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~-----~~~v~~v~~s~~~~~~l~s~~~dg  464 (882)
                      ..|.-.+.++.  +..+... ++ ...|-.|.+|++.-..   .+.....|     ...|++..|+|...+.+.-.+..|
T Consensus       169 NaH~yhiNSiS--~NsD~et-~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         169 NAHPYHINSIS--FNSDKET-LL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             ccceeEeeeee--ecCchhe-ee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence            45777788887  7677665 44 4457789999876421   12222333     346888899998877888889999


Q ss_pred             eEEEEecCCCCCCC------CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEeccc-
Q 002782          465 TIKVWSFDGLSDDA------EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHK-  536 (882)
Q Consensus       465 ~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~-  536 (882)
                      .|++-|++....-.      +..........+......|..+.|+++|+++++-+. -+++|||.... .++.++.-|. 
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence            99999998542100      000011112223334467889999999999998765 57999998754 5566665442 


Q ss_pred             -----------Cce---EEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          537 -----------RGI---WSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       537 -----------~~v---~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                                 ..|   ..+.||.|++.+++|+.....-+|-..
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                       223   357899999999999998888887643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=5.3e-05  Score=76.38  Aligned_cols=205  Identities=20%  Similarity=0.181  Sum_probs=134.8

Q ss_pred             ceEEcc-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782           24 PLVVSS-DGSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALS-PDDKLLFSSGHSREIRVWDLSTLKCLRSWKG  100 (882)
Q Consensus        24 ~va~s~-dg~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~s-pd~~~las~~~dg~i~iwd~~~~~~~~~~~~  100 (882)
                      .++|.+ +|.++++-. ++.|..|+..+++... +....  ...+++. +++.+ +++.. +.+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeec
Confidence            467887 665555554 3489999998887543 32222  5677777 67554 44444 4456669999865544443


Q ss_pred             -----CCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC
Q 002782          101 -----HDGPAIGMACHPSGGLLATAGAD--------RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD  167 (882)
Q Consensus       101 -----h~~~V~~l~fs~~~~~lasg~~d--------g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d  167 (882)
                           .......++++|+|++.++....        |.|..++.. ++...... .-.....++|+|+++. ++++-+..
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~-lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKT-LYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSE-EEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchh-eeeccccc
Confidence                 34567889999999977775533        557777777 55444333 3566789999999763 45677788


Q ss_pred             CcEEEEECCCCe-------EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc-ceeeEEEe
Q 002782          168 ATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCA  237 (882)
Q Consensus       168 g~I~vwd~~~~~-------~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~  237 (882)
                      +.|..+++....       .+..+....+..-.+++..+|+..++....+.|.+++.+ ++.+..+... ..+.+++|
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            899999985321       222233333458899999999988888889999999987 7666666555 45555555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.70  E-value=1.4e-05  Score=80.44  Aligned_cols=222  Identities=13%  Similarity=0.037  Sum_probs=138.5

Q ss_pred             CCcEEEEeCCCceeeeeeeCC--CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782          375 IEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  452 (882)
Q Consensus       375 ~~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~  452 (882)
                      +|.|..+|..+++.+......  .....+.   ..++++. +++++.++.+..||..+|+.+............. ...+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence            478999999999888776531  1222211   2335555 6666899999999999999887766422111111 2222


Q ss_pred             CCcEEEEeeCCCeEEEEecCCCCCCCCCccccc-chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE
Q 002782          453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT  531 (882)
Q Consensus       453 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~  531 (882)
                       . .++.++.++.+..+|..++..      ... ......... .........++..++++..++.|..+|+.+|+.+..
T Consensus        77 -~-~v~v~~~~~~l~~~d~~tG~~------~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   77 -G-RVYVGTSDGSLYALDAKTGKV------LWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             -T-EEEEEETTSEEEEEETTTSCE------EEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             -c-ccccccceeeeEecccCCcce------eeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence             2 466677888999999776531      111 000000001 112222223377888888899999999999999888


Q ss_pred             EecccCc----------eEEEEEcCCCCEEEEeeCCCc-EEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC
Q 002782          532 FRGHKRG----------IWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  600 (882)
Q Consensus       532 ~~~h~~~----------v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg  600 (882)
                      .......          +..-....++ .++.++.++. +.+ |+.+++.+....  ...+.. ....++..|+.++.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTT
T ss_pred             eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCC
Confidence            8764422          1122222344 6777777775 555 999998765333  222222 2557788898888999


Q ss_pred             eEEEEEcCCCeeEEE
Q 002782          601 LVKLWTVRTGECIAT  615 (882)
Q Consensus       601 ~i~iwd~~~~~~~~~  615 (882)
                      .|..||+++|+.+.+
T Consensus       223 ~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  223 RLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCCEEeE
Confidence            999999999998754

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=3.9e-07  Score=91.18  Aligned_cols=251  Identities=15%  Similarity=0.088  Sum_probs=171.8

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcceEEeeeeeecCCCEEEEEeec-CCeEEEEe
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWD  427 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd  427 (882)
                      |++.|..+...  ..+++..++-||.++.|....-   +.+..+..|...+.++.  .+-++.. +.+.+. |..++++|
T Consensus         8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~--~S~dg~L-~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA--VSYDGWL-FRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh--cccccee-EeeccCcccceeEEE
Confidence            44445544433  5678999999999999986542   23344567888888886  5566654 888777 99999999


Q ss_pred             CCCceEEeeeecccccEEEEEEccCC-C--cEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782          428 SESRCCVGVGTGHMGAVGAVAFSKKL-Q--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  504 (882)
Q Consensus       428 ~~~~~~~~~~~~~~~~v~~v~~s~~~-~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  504 (882)
                      +.+-..+..+....-+-.+-.+...| .  .+.++.-.++.+.++|-.....        .......-|..+|.++.+.|
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q  154 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ  154 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec
Confidence            88755443222111111111111112 1  1333445678888888554321        12333456889999999999


Q ss_pred             CCcEEEEEcCCCcEEEEeCCC-c-----eeE---------EEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc
Q 002782          505 NDSLVCTGSQDRTACVWRLPD-L-----VSV---------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  569 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~-~-----~~~---------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  569 (882)
                      -+..+.+....|.|.-|..+. .     ...         ..+.-.+....++.|+|++..+.+-+.|..|++++..+|+
T Consensus       155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            999999999999999998873 1     111         1111235568899999999999999999999999999998


Q ss_pred             eeeEee--------------------------------cCc-CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe
Q 002782          570 CLKTFE--------------------------------GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY  616 (882)
Q Consensus       570 ~~~~~~--------------------------------~h~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~  616 (882)
                      .++.+.                                .|. ..-+.+.|...|++|+-++-=| |++.++.++++++.+
T Consensus       235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            776543                                111 1235678889999999887766 899999999988776

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=1.3e-07  Score=87.71  Aligned_cols=165  Identities=16%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCCCEEEEEEcCCCCEEEEEe-----CCCcEE
Q 002782           54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAG-----ADRKVL  127 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h~~~V~~l~fs~~~~~lasg~-----~dg~v~  127 (882)
                      +.+..|.++-.+-+.+-.+..+++++.||.+.+++.+.-. ..+....-...-.+.++-..++++.+++     .-+..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            3444444444444455557789999999999999976521 1111111111112223333455555543     124455


Q ss_pred             EEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE-EEEecCcccceEEEEEcc-CCCEEEE
Q 002782          128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITS-DGSTLIS  205 (882)
Q Consensus       128 vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~v~~l~~s~-~~~~l~s  205 (882)
                      .|+++-.+.+..-+.....|++++-+|.. ..++++|+.||.+-+||.+.... ...+..|..+++.+.|+| ++..|++
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft  241 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT  241 (319)
T ss_pred             eecccccccccccccccccchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence            66665433222222223349999999974 46889999999999999988754 345688999999999998 5678999


Q ss_pred             EeCCCeEEEEecCC
Q 002782          206 AGRDKVVNLWDLRD  219 (882)
Q Consensus       206 ~~~dg~i~vwd~~~  219 (882)
                      ++.||.+..||..+
T Consensus       242 ~sedGslw~wdas~  255 (319)
T KOG4714|consen  242 CSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCcEEEEcCCC
Confidence            99999999999875

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.67  E-value=0.0002  Score=67.21  Aligned_cols=143  Identities=17%  Similarity=0.062  Sum_probs=97.9

Q ss_pred             EcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 002782           68 LSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV  146 (882)
Q Consensus        68 ~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~  146 (882)
                      +.+|. .+++.|+..+.+.--|..+|+....-. -...|.+-+.- -|++++.|+..|.+.+-+..+|.....+......
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            33444 466778889999999999998776432 12333333222 4678999999999999999999887777643322


Q ss_pred             EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782          147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      =......+++  .++..|+.|+..+..|..+..++...+...+...+-+..|-...|+.+...|.+.-
T Consensus        96 k~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   96 KVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             ccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence            2222334444  45999999999999999999999988766555556666664444555555554443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.66  E-value=1.2e-05  Score=76.83  Aligned_cols=199  Identities=15%  Similarity=0.162  Sum_probs=127.7

Q ss_pred             EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782          447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  526 (882)
Q Consensus       447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~  526 (882)
                      ++.+++|+  +++.-+|..|.+-.....-...    .. ...+.......-.-++||||+.+||.+...|+|++||+...
T Consensus         3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si----~~-kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~   75 (282)
T PF15492_consen    3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSI----IG-KCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS   75 (282)
T ss_pred             eeecCCCc--EEEEEeccEEEEEeccCCchhe----eE-EEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence            45566765  5556677777776554331100    00 11112222334568999999999999999999999998764


Q ss_pred             eeEEEEec-------ccCceEEEEEcCCC------CEEEEeeCCCcEEEEecCCC-----ceeeEee---cCcCCEEEEE
Q 002782          527 VSVVTFRG-------HKRGIWSVEFSPVD------QVVITASGDKTIKIWSISDG-----SCLKTFE---GHTSSVLRAS  585 (882)
Q Consensus       527 ~~~~~~~~-------h~~~v~~l~~s~~~------~~l~s~~~d~~i~iwd~~~~-----~~~~~~~---~h~~~v~~~~  585 (882)
                      ... .+.+       -...|..+.|.+..      ..|++-..+|.++=|-+..+     +...+|.   .+...|.++.
T Consensus        76 ~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   76 ELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             eeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            333 3322       12456677775422      24666667788887776432     3333433   2467899999


Q ss_pred             EEeCCCEEEEeec----CC-------eEEEEEcCCCeeEEE--------------------e---------ccCCCceEE
Q 002782          586 FLTRGAQIVSCGA----DG-------LVKLWTVRTGECIAT--------------------Y---------DKHEDKIWA  625 (882)
Q Consensus       586 ~s~~g~~l~s~~~----dg-------~i~iwd~~~~~~~~~--------------------~---------~~h~~~v~~  625 (882)
                      ++|..+.|+.||.    ++       -+..|.+-++.+-..                    +         ....+.|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            9999888877764    11       366777643321100                    0         113567899


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          626 LAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      |..||||+.||+...+|.|.+|++..=.
T Consensus       235 mSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            9999999999999999999999998643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.65  E-value=4.9e-05  Score=75.30  Aligned_cols=242  Identities=12%  Similarity=0.106  Sum_probs=154.1

Q ss_pred             EEEEeCCCCcEEEEEEcCCc-EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEe----ecCCeEEEEeCC-Cc
Q 002782          358 DLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG----SKDNSVRLWDSE-SR  431 (882)
Q Consensus       358 ~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~-~~  431 (882)
                      .++..|.....++++-.-|. ..+||..++.....+....+.-..=.-+|+++|++++++-    ...|.|-+||.. +-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            45556656677777776654 5678999988877666544443322233899999855552    346899999999 66


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC--cEE
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLV  509 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l  509 (882)
                      ..+..+..|.-.-..+.+.|+++. |+.+.  |-|.     +                             +|+.  ..|
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~t-LvVAN--GGI~-----T-----------------------------hpd~GR~kL  131 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGET-LVVAN--GGIE-----T-----------------------------HPDSGRAKL  131 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCE-EEEEc--CCCc-----c-----------------------------CcccCceec
Confidence            778888888777778889999874 33331  1110     0                             0110  111


Q ss_pred             EEEcCCCcEEEEeCCCceeEEE--E--ecccCceEEEEEcCCCCEEEEeeCCCc-------EEEEecCCCceeeEee---
Q 002782          510 CTGSQDRTACVWRLPDLVSVVT--F--RGHKRGIWSVEFSPVDQVVITASGDKT-------IKIWSISDGSCLKTFE---  575 (882)
Q Consensus       510 a~~s~dg~i~iwd~~~~~~~~~--~--~~h~~~v~~l~~s~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~~~---  575 (882)
                      -..+.+.++...|..+++.+..  +  .-|...|..+++.++|..++..-..|.       |-+++-  +..+..+.   
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~  209 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPE  209 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCCh
Confidence            2223344455556666665555  3  237778999999998877766544332       333332  22232222   


Q ss_pred             ----cCcCCEEEEEEEeCCCEEEEeec-CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782          576 ----GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  641 (882)
Q Consensus       576 ----~h~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  641 (882)
                          .-.+-+-+++++++|.+++..+- -|.+.+||..+++.+....  -..+..++..+++ +++|.+..
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCc
Confidence                22356788999999988866555 5699999999999988765  3446777777777 66666554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.65  E-value=5.9e-07  Score=97.81  Aligned_cols=180  Identities=21%  Similarity=0.294  Sum_probs=139.0

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782           31 GSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA  109 (882)
Q Consensus        31 g~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~  109 (882)
                      +..+..|+ .+.+..+|+.+.+..+...-....|+-|..  +++++.+|...|+|.+-|..+.+.++++..|++.|..+ 
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf-  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF-  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence            33444443 457899999999887776655555666654  58899999999999999999999999999999999775 


Q ss_pred             EcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE---CCC
Q 002782          110 CHPSGGLLATAGA---------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD---LLA  177 (882)
Q Consensus       110 fs~~~~~lasg~~---------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd---~~~  177 (882)
                       +-.|++|+++|.         |..|+|||+...+.+.-+.-+-++ .-+.|+|.-. ..++.++..|...+-|   +.+
T Consensus       224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-ceEEEEecccceeeccccccCC
Confidence             556889999873         677999999888776666555554 5677888643 4588888899999988   333


Q ss_pred             C-eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782          178 K-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  216 (882)
Q Consensus       178 ~-~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd  216 (882)
                      . .-+.-+....+.+.+++++++|+.++.+..+|.|.+|.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            3 12233333445699999999999999999999999998

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.5e-07  Score=90.15  Aligned_cols=213  Identities=18%  Similarity=0.112  Sum_probs=151.2

Q ss_pred             cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCc
Q 002782          439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT  517 (882)
Q Consensus       439 ~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~  517 (882)
                      -|...|+.+..+..  .++.+++-||.++.|.-....       -......+..|-..|.+++.+-+|.++++.+. |..
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs   77 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS   77 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence            36777777776554  389999999999999754311       12244556778889999999999999999777 999


Q ss_pred             EEEEeCCCceeEEEEecccCce-EEEEEcCCCC--EEE-EeeCCCcEEEEecCCCce--eeEeecCcCCEEEEEEEeCCC
Q 002782          518 ACVWRLPDLVSVVTFRGHKRGI-WSVEFSPVDQ--VVI-TASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGA  591 (882)
Q Consensus       518 i~iwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~--~l~-s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~  591 (882)
                      ++++|+.+...+..++-..-|= -+...+|.+.  .|+ +.-.++.+.++|-....|  ...-.-|..+|..+.+++-+.
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            9999998766554333211111 1112222211  233 334578899999654432  233344999999999999999


Q ss_pred             EEEEeecCCeEEEEEcCC------CeeEEEe---------ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHH
Q 002782          592 QIVSCGADGLVKLWTVRT------GECIATY---------DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE  656 (882)
Q Consensus       592 ~l~s~~~dg~i~iwd~~~------~~~~~~~---------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  656 (882)
                      .++|....|.|.-|....      ++....+         ........++.|+|+|..+.+-+.|..|+++...++....
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            999999999999998762      1111111         1233567889999999999999999999999999998766


Q ss_pred             HHhh
Q 002782          657 EAFR  660 (882)
Q Consensus       657 ~~~~  660 (882)
                      +..+
T Consensus       238 eiDE  241 (558)
T KOG0882|consen  238 EIDE  241 (558)
T ss_pred             hhhc
Confidence            5543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=0.00011  Score=73.61  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeecCCC-------
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGHDG-------  103 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~----------~dg~i~iwd~~~~~~~~~~~~h~~-------  103 (882)
                      .|.++|..+++.+..+...  -.-.+++||||+.+++++          +.-.|.+||..+..+...+.-..+       
T Consensus        18 rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             eEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            7999999999988777642  334577899999988752          345799999999988876543322       


Q ss_pred             CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-CCeE
Q 002782          104 PAIGMACHPSGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKC  180 (882)
Q Consensus       104 ~V~~l~fs~~~~~lasg--~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-~~~~  180 (882)
                      ....++++.||+++...  +....|.|-|+..++.+..+.- .+...   .-|.++. -+.+-+.||.+.-..+. .|+.
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~---iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWL---IYPSGNR-GFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEE---EEEEETT-EEEEEETTSCEEEEEETSTSSE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEE---EEecCCC-ceEEEecCCceEEEEECCCCCE
Confidence            12346889999988875  4567899999999998877762 23222   2233322 28888999999999887 4554


Q ss_pred             EEEe----cCcccce-EEEEEccCCCEEEEEeCCCeEEEEecCCc
Q 002782          181 VATL----DKHFSRV-TSMAITSDGSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       181 ~~~l----~~h~~~v-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~  220 (882)
                      ..+.    .....++ ..-.+...+..++-.+.+|.|+--++...
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~  215 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD  215 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC
Confidence            4221    1111111 12233444445555666777776666543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.2e-06  Score=83.73  Aligned_cols=260  Identities=12%  Similarity=0.122  Sum_probs=158.7

Q ss_pred             EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782          378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  457 (882)
Q Consensus       378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l  457 (882)
                      ++..+..+.+....+.++...|..++  ++|..+-++..++.+..|.|.|+.+..++..+..+ ..+++++|.-+..+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            67777777777778889999999998  88888866899999999999999999999988888 8999999999999999


Q ss_pred             EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE------EEcCCCcEEEEEcCCCcEEEEeCCC--ceeE
Q 002782          458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLPD--LVSV  529 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~la~~s~dg~i~iwd~~~--~~~~  529 (882)
                      ..|..+|.|.+||++.......       .........+|..+      ...+.|.+++..+.+  +..|.+.-  +...
T Consensus       252 YaGl~nG~VlvyD~R~~~~~~~-------e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEGPLM-------ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             EEeccCceEEEEEccCCCchHh-------hhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence            9999999999999986532111       11111111223322      233445566655543  44555421  1122


Q ss_pred             EEEe-cccCceEEEEEcCCCCE-EEEeeCCCc------EEE-EecCCCceeeE-eecCcCC----E--EE-EEEEeCCCE
Q 002782          530 VTFR-GHKRGIWSVEFSPVDQV-VITASGDKT------IKI-WSISDGSCLKT-FEGHTSS----V--LR-ASFLTRGAQ  592 (882)
Q Consensus       530 ~~~~-~h~~~v~~l~~s~~~~~-l~s~~~d~~------i~i-wd~~~~~~~~~-~~~h~~~----v--~~-~~~s~~g~~  592 (882)
                      ..++ +..+...+++..+..+. |++.-.+.+      |-. -|-.+|..+.. -.+|.+.    +  +. +.-.++.++
T Consensus       323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~  402 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY  402 (463)
T ss_pred             cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence            2122 12445566666664444 333322211      111 11123322211 1112110    0  11 122345566


Q ss_pred             EEEe-ecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC-CCC-EEEEEeCCCCEEEEECCC
Q 002782          593 IVSC-GADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTE-MFATGGSDALVNLWHDST  651 (882)
Q Consensus       593 l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~-~l~s~~~dg~i~iw~~~~  651 (882)
                      ++.. +..+.+.+||+.+++.++++.. ..+|..++... ++. +|++ -.|..++|++.+.
T Consensus       403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNES  462 (463)
T ss_pred             EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhh-eecceEEEEecCC
Confidence            6544 4456899999999999999974 57888776533 343 5544 4456688887543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=1.9e-07  Score=62.72  Aligned_cols=39  Identities=36%  Similarity=0.795  Sum_probs=37.2

Q ss_pred             CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      |++++++.+|.++|.+|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=1.8e-07  Score=62.79  Aligned_cols=39  Identities=38%  Similarity=0.627  Sum_probs=37.0

Q ss_pred             CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD   88 (882)
Q Consensus        50 ~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd   88 (882)
                      |++++++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.56  E-value=1.6e-06  Score=80.73  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=102.4

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCcee-eeeeeC-CCcceEEeeeeeecCCCEEEEEee-----cCCeEEEEe
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAG-HSEIVLCLDTCALSSGKILIVTGS-----KDNSVRLWD  427 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd  427 (882)
                      ++-...++.-.++.++++..+|.+.+++.+.-.. ....+. |.+.   .+.+....++. +.++.     .-+..+.|+
T Consensus        90 ep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~---as~~~~~~~~~-i~s~~~g~~n~~d~~~a~~  165 (319)
T KOG4714|consen   90 EIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS---ASRKICRHGNS-ILSGGCGNWNAQDNFYANT  165 (319)
T ss_pred             CCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc---cccceeecccE-EecCCcceEeeccceeeec
Confidence            3333344444667889999999999998765211 111111 1111   11112233332 22221     123445566


Q ss_pred             CCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CC
Q 002782          428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-ND  506 (882)
Q Consensus       428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~  506 (882)
                      +...+...........|++++-+|..++++++|+.||.+.+||.+...         .+...+.+|+.+|..+-|+| ++
T Consensus       166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCc
Confidence            554333322222334599999999888899999999999999998652         25667789999999999999 67


Q ss_pred             cEEEEEcCCCcEEEEeCCC
Q 002782          507 SLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       507 ~~la~~s~dg~i~iwd~~~  525 (882)
                      ..|++++.||.+.-||..+
T Consensus       237 ~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeEecCCCcEEEEcCCC
Confidence            8899999999999999764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.54  E-value=0.00013  Score=73.13  Aligned_cols=193  Identities=15%  Similarity=0.104  Sum_probs=102.4

Q ss_pred             CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-CceEEeee----eccccc-EEEEEE
Q 002782          376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVG----TGHMGA-VGAVAF  449 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~~~-v~~v~~  449 (882)
                      ..|.|.|+..++....+....    |.....+.+ +. +.+-|.||++.-..+. .|+.....    .....+ +..-++
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~-~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~  191 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN-RG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY  191 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTS----EEEEEEEET-TE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred             CeEEEEECCCCceeeeecCCC----EEEEEecCC-Cc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence            466777777777665554322    222112222 23 6677778887777766 34433211    111111 112223


Q ss_pred             ccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcC---CC-------c
Q 002782          450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ---DR-------T  517 (882)
Q Consensus       450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~---dg-------~  517 (882)
                      ...+. .++-.+.+|.|+--|+.........+.+.......  .=..+.-.-+++++..+.|.+.-.   ++       .
T Consensus       192 ~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  192 SRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             ETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             ECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            33333 34446777877777776543111111111000000  001123445777775555444211   11       4


Q ss_pred             EEEEeCCCceeEEEEecccCceEEEEEcCCCC-EEEEe-eCCCcEEEEecCCCceeeEeec
Q 002782          518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEG  576 (882)
Q Consensus       518 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~  576 (882)
                      |.++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.++++.+
T Consensus       271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            88999999999998884 34688999999877 55544 4579999999999999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.1e-05  Score=80.19  Aligned_cols=94  Identities=16%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             EEEEECCCCeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782           84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF  162 (882)
Q Consensus        84 i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~  162 (882)
                      +++.+-.+.+...-+.+|...|..++|||... ++..++.+..|+|.|+++..++..+..| ..+++++|.-|. ..+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence            66666666666666777889999999999877 7888999999999999999999888877 889999999885 57899


Q ss_pred             EEeCCCcEEEEECCCCe
Q 002782          163 SGSDDATVRVWDLLAKK  179 (882)
Q Consensus       163 sgs~dg~I~vwd~~~~~  179 (882)
                      .|...|.|.|||+...+
T Consensus       253 aGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EeccCceEEEEEccCCC
Confidence            99999999999997654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=0.0021  Score=68.42  Aligned_cols=179  Identities=12%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                      .....|.+.+++|+...|+.|+.||+|.+||...+....  ....-.++.++|+|+|..+++|+..|.+.+||+.-+..-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            367889999999999999999999999999987664332  234456778999999999999999999999998633211


Q ss_pred             E----------------EeccCCCceEEEEEcCCCC-------------EEEEEeCCCCEEEEECCCHHHHHHHhhhhHH
Q 002782          614 A----------------TYDKHEDKIWALAVGKKTE-------------MFATGGSDALVNLWHDSTAAEREEAFRKEEE  664 (882)
Q Consensus       614 ~----------------~~~~h~~~v~~l~~s~~~~-------------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  664 (882)
                      .                .+..+......+.|++...             .|+..-..|-+.+-.+..|-...-..-.   
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~~G~l~~---  411 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFTRGDLGL---  411 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccccCCcccH---
Confidence            1                1113445566777774321             3333444444555443333211110000   


Q ss_pred             HHhccchHHHhhhccchHHHHHHHhhcCCc---hhHH----HHHHHHHh---cchhHHHHHHHHhcc
Q 002782          665 AVLRGQELENAVLDADYTKAIQVAFELRRP---HKLF----ELFASVCR---KREAELQIEKALHAL  721 (882)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~---~~~~----~~~~~~~~---~~~~~~~l~~~~~~l  721 (882)
                          .+=..++++.....+|+.+...++--   +..+    .+...+++   ..+.+..++.+|..+
T Consensus       412 ----~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF  474 (545)
T PF11768_consen  412 ----VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSF  474 (545)
T ss_pred             ----HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhc
Confidence                00112567777888999988888754   2222    33333433   334566777777554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=7.6e-08  Score=103.73  Aligned_cols=219  Identities=14%  Similarity=0.245  Sum_probs=159.3

Q ss_pred             eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-eEE
Q 002782          389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK  467 (882)
Q Consensus       389 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-~i~  467 (882)
                      ...+..|....+|++  ++.+.+. ++.|+-.|.|++++..+|.......+|.++|+.+.-+.+|...|.+++... -..
T Consensus      1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            345667888888988  7777776 999999999999999999999999999999999999999886666655554 567


Q ss_pred             EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe----cccCceEEEE
Q 002782          468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----GHKRGIWSVE  543 (882)
Q Consensus       468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~  543 (882)
                      +|++.....         ....+    ..-.++.|+..-..-+.|+....+.+||+.++.++.++-    +....-.+..
T Consensus      1171 LW~~~s~~~---------~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             HhccccccC---------ccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            898764311         11111    234578888766555667666789999999987766632    2233347889


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCce
Q 002782          544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI  623 (882)
Q Consensus       544 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v  623 (882)
                      |+|++.+++   .||  .+||++..+.++.|...... ..-.|+|.|..++.-+     -|||+++.+.+.....-  .-
T Consensus      1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dq 1304 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQ 1304 (1516)
T ss_pred             cCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cc
Confidence            999998887   344  58999988878777644321 2246899999988765     48999999888766532  23


Q ss_pred             EEEEEcCCCCEEE
Q 002782          624 WALAVGKKTEMFA  636 (882)
Q Consensus       624 ~~l~~s~~~~~l~  636 (882)
                      ..+.|...|..+.
T Consensus      1305 c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMY 1317 (1516)
T ss_pred             eEEEeccCccchh
Confidence            5567777666443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=1.4e-07  Score=101.87  Aligned_cols=264  Identities=18%  Similarity=0.210  Sum_probs=173.7

Q ss_pred             eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC-eEE
Q 002782          346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVR  424 (882)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~  424 (882)
                      .+.+..++...++++|+. +.+++++|+..|.|++|++.+|.......+|..+++-+.  .+.+|..++.+++... -..
T Consensus      1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~ve--Ps~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVE--PSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccccccccccccc--ccCCcceeeeeccccCchHH
Confidence            345566777788999987 788999999999999999999999999999999999998  8888988666665554 567


Q ss_pred             EEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782          425 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  503 (882)
Q Consensus       425 iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  503 (882)
                      +|++.+ +.....+.    .-.++.|+...+ +-+.|.......+||+.+...-..      ...-..+....-++..|+
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t------ylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT------YLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH------hcCcchhhhhhccccccC
Confidence            898865 22232222    345677876644 344555556788999987631100      000011112223788999


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEE
Q 002782          504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR  583 (882)
Q Consensus       504 ~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  583 (882)
                      |+.+++.-   ||  .+||++..+.+..|...+ --..-.|+|.|..++.-+.     |||+++.+.+++...-.  -..
T Consensus      1240 P~D~LIln---dG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~ 1306 (1516)
T KOG1832|consen 1240 PCDTLILN---DG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCA 1306 (1516)
T ss_pred             CCcceEee---Cc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceE
Confidence            99988863   45  589998887776665433 1223468999998888765     89999998877654321  234


Q ss_pred             EEEEeCCCEEEEeec------C-----------CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEE
Q 002782          584 ASFLTRGAQIVSCGA------D-----------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT  637 (882)
Q Consensus       584 ~~~s~~g~~l~s~~~------d-----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  637 (882)
                      +.|...|..+...-.      |           ...+-++..+...+.++.. ...|..++-+|...+|..
T Consensus      1307 VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred             EEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence            667766665433220      0           1244455555556666653 345556666666665554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=0.00013  Score=79.30  Aligned_cols=207  Identities=11%  Similarity=-0.006  Sum_probs=127.5

Q ss_pred             ecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee--CC-CeEEEEecCCCCCCCCCccc
Q 002782          407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SD-HTIKVWSFDGLSDDAEQPMN  483 (882)
Q Consensus       407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~--~d-g~i~~wd~~~~~~~~~~~~~  483 (882)
                      .++|+.+....-..+.+.+.|..+.+...+..-.. ....+.+++++...++++.  +. +++..-+....         
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---------  270 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---------  270 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC---------
Confidence            34565533444445677778888776665544322 3456788888884444431  21 22222221110         


Q ss_pred             ccchhhhhhcCCCeeEE--------EEcCCCcEEEEEcCCCcEEEEeCCC----c-eeEEEEecccCceEEEEEcCCCCE
Q 002782          484 LKAKAVVAAHGKDINSL--------AVAPNDSLVCTGSQDRTACVWRLPD----L-VSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       484 ~~~~~~~~~~~~~i~~~--------~~s~~~~~la~~s~dg~i~iwd~~~----~-~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                                 .  ..+        ++.++|++...+  ++.|.+.|..+    + ..+..+. -....+.+.++|||++
T Consensus       271 -----------d--~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky  334 (635)
T PRK02888        271 -----------D--WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY  334 (635)
T ss_pred             -----------c--eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE
Confidence                       0  112        334578776663  57899999988    3 4444444 5667889999999998


Q ss_pred             EEEeeC-CCcEEEEecCCCce------------eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC--------
Q 002782          551 VITASG-DKTIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--------  609 (882)
Q Consensus       551 l~s~~~-d~~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~--------  609 (882)
                      +++++. +.+|.|.|+.+.+.            +...+- .......+|.++|+...|...|..|-.|++.+        
T Consensus       335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~  413 (635)
T PRK02888        335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGE  413 (635)
T ss_pred             EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccc
Confidence            877654 89999999987542            333332 23345688999998888888899999999876        


Q ss_pred             --CeeEEEeccCCCceEE-----EEEcCCCCEEEEEeC
Q 002782          610 --GECIATYDKHEDKIWA-----LAVGKKTEMFATGGS  640 (882)
Q Consensus       610 --~~~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~  640 (882)
                        ...+..++-|-.+-.-     =.-.|||++|++...
T Consensus       414 ~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        414 KVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             cCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence              3344545444322211     123678888887543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.46  E-value=1.5e-05  Score=85.06  Aligned_cols=195  Identities=14%  Similarity=0.141  Sum_probs=123.2

Q ss_pred             EEccCCCEEEEEeCC-eEEEEEcCCCceee-eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-----EEEe
Q 002782           26 VVSSDGSFIACACGE-SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRSW   98 (882)
Q Consensus        26 a~s~dg~~la~~~~~-~I~i~d~~~~~~~~-~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~-----~~~~   98 (882)
                      +++..+++++.|... .+.+|+-.+|+... ...+-...++...+|++..++|.|+..|.|.++-+..+.+     +...
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            466788999998875 89999977776433 3334556778888999999999999999999998876422     1122


Q ss_pred             -ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEE
Q 002782           99 -KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW  173 (882)
Q Consensus        99 -~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vw  173 (882)
                       +.|...|++++|++++..+.+|...|.|..-.+.+.    ...+.+..-.+.|..+....   ..+|++....  ..+.
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r--~~Lc  194 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTR--CILC  194 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhh--hhee
Confidence             237889999999999999999999999998888762    11122333456666666543   2334433322  2344


Q ss_pred             ECCCCeEEEEecCcccc--eEEEEEccC----CCEEEEEeCCCeEEEEecCC-ceeeeee
Q 002782          174 DLLAKKCVATLDKHFSR--VTSMAITSD----GSTLISAGRDKVVNLWDLRD-YSCKLTV  226 (882)
Q Consensus       174 d~~~~~~~~~l~~h~~~--v~~l~~s~~----~~~l~s~~~dg~i~vwd~~~-~~~~~~~  226 (882)
                      +.+.++..+.-+..+..  -.+.+|-|.    .+-.+.+++-| .|+|..+- +...++.
T Consensus       195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTH  253 (726)
T ss_pred             ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEee
Confidence            44433311111111111  334455553    44556666666 78898763 3344443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.44  E-value=0.00044  Score=73.63  Aligned_cols=66  Identities=18%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782           69 SPDDKLLFSS---------GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC  136 (882)
Q Consensus        69 spd~~~las~---------~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~  136 (882)
                      |||+++++..         +..+.+.+||+++++....... ...+....|||+|+++|... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            7899988874         2346899999999876655443 67889999999999999986 58899999877743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=3.3e-06  Score=92.14  Aligned_cols=181  Identities=14%  Similarity=0.202  Sum_probs=132.6

Q ss_pred             EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecc
Q 002782          456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH  535 (882)
Q Consensus       456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h  535 (882)
                      .++-|+-...+..+|+.+.....          ..  +-+.--+.....+++.+.+|...|+|.+-|..+.+.+.++..|
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r----------~~--~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETR----------TT--NVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             ceeecchhhheeeeecccceeee----------ee--eccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence            46667666677778887653211          11  1111113344467899999999999999999999999999999


Q ss_pred             cCceEEEEEcCCCCEEEEeeC---------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeC-CCEEEEeecCCeEEEE
Q 002782          536 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW  605 (882)
Q Consensus       536 ~~~v~~l~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~iw  605 (882)
                      .+.|.++...  |+.|++++.         |..|+|||++.-+.+..+.-+.++ .-+.|.|. ...++.++..|...+-
T Consensus       217 s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            9999887765  899999875         556899999887776666545444 34677775 4578888888999998


Q ss_pred             E---cCCC-eeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782          606 T---VRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  651 (882)
Q Consensus       606 d---~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~  651 (882)
                      |   +.+. .-+..+..-...+.++.+|++++.|+.|..+|.|.+|....
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            8   3332 12233333345599999999999999999999999998544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.41  E-value=0.00021  Score=81.38  Aligned_cols=243  Identities=12%  Similarity=0.111  Sum_probs=139.8

Q ss_pred             cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782          352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  431 (882)
Q Consensus       352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  431 (882)
                      ..+.|.++.|.. +.+.+.+++..|.|.+.|.++.... ....-...|.++.  |+|++.. ++..+..+++.+... +.
T Consensus        67 gd~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f  140 (1265)
T KOG1920|consen   67 GDDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DF  140 (1265)
T ss_pred             CCcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-cc
Confidence            346899999987 5666777788899999988776543 2233455677777  8999987 777777777765432 22


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc-ccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVC  510 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~la  510 (882)
                      .++.....+.      .-.+.+.  .+.++....=.-+.-..+......+ ...+..... .....=+++.|--||.++|
T Consensus       141 ~~i~E~~L~~------d~~~~sk--~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fA  211 (1265)
T KOG1920|consen  141 EPIAEKPLDA------DDERKSK--FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFA  211 (1265)
T ss_pred             cchhcccccc------ccccccc--cceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEE
Confidence            2221111100      0011111  2333332211111111110000000 000000000 1122236799999999999


Q ss_pred             E-----EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEee---CCCcEEEEecCCCceeeE----eecCc
Q 002782          511 T-----GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLKT----FEGHT  578 (882)
Q Consensus       511 ~-----~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~----~~~h~  578 (882)
                      +     ....+.|++||.+ +..-.+-....+.-.+++|-|.|..+++-.   .|+.|.+|.- +|-....    +....
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccc
Confidence            8     3333789999977 433333233334456899999999998863   4567999984 4433332    33334


Q ss_pred             CCEEEEEEEeCCCEEEE---eecCCeEEEEEcCCCe
Q 002782          579 SSVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE  611 (882)
Q Consensus       579 ~~v~~~~~s~~g~~l~s---~~~dg~i~iwd~~~~~  611 (882)
                      ..+..++|+.++..|+.   ......|++|-+.+..
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            45899999999999987   4444569999987764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.33  E-value=0.011  Score=66.39  Aligned_cols=426  Identities=13%  Similarity=0.131  Sum_probs=215.3

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee--cCCCCEEEEEEcCCC----
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSG----  114 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~l~fs~~~----  114 (882)
                      .|++++-.  ..+..+.. .+.++..+.+.+...++.++.++.+...++..+. ++...  .-...|.|+.++|-|    
T Consensus       471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~  546 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN  546 (1096)
T ss_pred             cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence            45555533  22333432 3456777777777788888887888888877666 22222  234789999999842    


Q ss_pred             --CEEEEEeCCCcEEEEE-CCCCeEEEEe-ecC---CCcEEEEEEecCCCccEEEEEeCCCcEEEEEC--CCCeEEEEec
Q 002782          115 --GLLATAGADRKVLVWD-VDGGFCTHYF-KGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATLD  185 (882)
Q Consensus       115 --~~lasg~~dg~v~vwd-~~~~~~~~~~-~~h---~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~--~~~~~~~~l~  185 (882)
                        +++|.|..+..+.+-- ..+...+... .+-   ...|.-.+|-.|  ..+|.++..||.+.-+.+  .++..-..-+
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk  624 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRKK  624 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEccccc
Confidence              2688887665544332 2333322222 111   122333444333  566999999999876654  4443322221


Q ss_pred             C--cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccccc
Q 002782          186 K--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  263 (882)
Q Consensus       186 ~--h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (882)
                      .  ...++.--.|+..++.-+.+..|+-..+|.....-....+.. ..+..++...+..                     
T Consensus       625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-kev~~~c~f~s~a---------------------  682 (1096)
T KOG1897|consen  625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-KEVNHMCPFNSDA---------------------  682 (1096)
T ss_pred             cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-HHhhhhccccccc---------------------
Confidence            1  233566666776666656666666666665433222211111 1111122111111                     


Q ss_pred             ceEEEEEcCCCeEEEEECCCc-eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEe-----------CCe---E
Q 002782          264 EIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-----------DQQ---L  328 (882)
Q Consensus       264 ~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~---i  328 (882)
                      ..-.+.....+.+++..++.- ++..+..+       ..   ......++.+....+.+.+.           ...   +
T Consensus       683 ~~d~l~~~~~~~l~i~tid~iqkl~irtvp-------l~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l  752 (1096)
T KOG1897|consen  683 YPDSLASANGGALTIGTIDEIQKLHIRTVP-------LG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL  752 (1096)
T ss_pred             CCceEEEecCCceEEEEecchhhcceeeec-------CC---CChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence            112233334445555544432 11110000       00   11111111111111111100           001   1


Q ss_pred             EEEEecccccccceeeeeeeecc--cCCceEEEEEeCCCCcEEEEEEc----------CCcEEEEeCCCceeeeeeeCC-
Q 002782          329 LLYTTVEVPEKKMELILSKRLVG--YNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGH-  395 (882)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~----------~~~i~i~d~~~~~~~~~~~~~-  395 (882)
                      .+++..+     .+......+..  .-..+.++.|..+.+.++++|+.          .|.|.+|.............+ 
T Consensus       753 ~vlD~nT-----f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~  827 (1096)
T KOG1897|consen  753 RVLDQNT-----FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV  827 (1096)
T ss_pred             EEecCCc-----eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence            1111111     01111111110  11234555577766888888864          467777776663333333222 


Q ss_pred             -CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782          396 -SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  474 (882)
Q Consensus       396 -~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~  474 (882)
                       .+.+.++.   .-+|+. +|  +-+..|++|++.+++.++.-..+..++..+...-.+. .++.|.--+.+.+......
T Consensus       828 v~Gav~aL~---~fngkl-lA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  828 VKGAVYALV---EFNGKL-LA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             eccceeehh---hhCCeE-EE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEecc
Confidence             23444442   233433 33  3466899999999988888888889999999888776 7889988888888766543


Q ss_pred             CCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782          475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  524 (882)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~  524 (882)
                      +...       .......+....+++.+-.+. .++.+..+|.+.+-..+
T Consensus       901 eg~f-------~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  901 EGNF-------EEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             CCce-------EEeehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence            2111       111223355667777776554 44455667777776554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=1.7e-05  Score=85.91  Aligned_cols=180  Identities=14%  Similarity=0.178  Sum_probs=126.4

Q ss_pred             ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEE
Q 002782          442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  521 (882)
Q Consensus       442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iw  521 (882)
                      ..++|++++..   +++-|+.+|.|.+++.+..           . .....|...      ..+|.++++++.||+|.|.
T Consensus        40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~-----------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~   98 (846)
T KOG2066|consen   40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGN-----------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIG   98 (846)
T ss_pred             hHHHHHHhhcc---eeeeccccceEEEEecCCc-----------c-ccccccccc------ccCCceEEEecCCCcEEEe
Confidence            45666676643   8999999999999997653           1 122223222      5689999999999999999


Q ss_pred             eCCCceeEEEEecccCceEEEEEcCC-----CCEEEEeeCCCcEEEEecCC---CceeeEeecCcCCEEEEEEEeCCCEE
Q 002782          522 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTRGAQI  593 (882)
Q Consensus       522 d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l  593 (882)
                      .+-+.+...++. ...++.+++++|+     .+.+++|+.-| +.++.-.=   ...+ .+..-.++|.++.|.  |+++
T Consensus        99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lI  173 (846)
T KOG2066|consen   99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLI  173 (846)
T ss_pred             eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEE
Confidence            998888777666 5678999999998     56889998888 77776321   1111 344456889988885  7788


Q ss_pred             EEeecCCeEEEEEcCCCeeEEEeccCCCce------EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          594 VSCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       594 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v------~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      +-++.+| |+|||+.+++.+..++.....+      ..+.|.++.++++ |=. .+|.|..+.
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~-d~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWG-DSVKICSIK  233 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecC-CeEEEEEEe
Confidence            8888777 9999999998888776433332      3466766655443 322 235555544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.29  E-value=0.0014  Score=72.99  Aligned_cols=190  Identities=14%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCceeeeecCCCc------cEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782           30 DGSFIACACGESINIVDLSNASIKSTIEGGSD------TIT--ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH  101 (882)
Q Consensus        30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~------~I~--~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h  101 (882)
                      +++.++....+.|.-+|..+|+.+-.......      .+.  .+++. ++..++.++.++.|+-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            55544444456899999999998766543222      110  01111 2267888888999999999999998877643


Q ss_pred             CCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEEEEeecCCCc--------------------
Q 002782          102 DGP-----AI-GMACHPSGGLLATAG---------ADRKVLVWDVDGGFCTHYFKGHKGV--------------------  146 (882)
Q Consensus       102 ~~~-----V~-~l~fs~~~~~lasg~---------~dg~v~vwd~~~~~~~~~~~~h~~~--------------------  146 (882)
                      ...     +. ...+.  +..++.++         .++.+...|..+|+.+..+......                    
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     11 11222  24455553         3678999999999988776542110                    


Q ss_pred             EE-EEEEecCCCccEEEEEeCCC------------------cEEEEECCCCeEEEEecCcccceEE------EEEc----
Q 002782          147 VS-SILFHPDTDKSLLFSGSDDA------------------TVRVWDLLAKKCVATLDKHFSRVTS------MAIT----  197 (882)
Q Consensus       147 V~-~l~f~~~~~~~~l~sgs~dg------------------~I~vwd~~~~~~~~~l~~h~~~v~~------l~~s----  197 (882)
                      |. ..++.+.+  ..++.++.++                  .|.-.|..+|+.+-..+.-......      ..+.    
T Consensus       218 vw~~pa~d~~~--g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         218 SWASPTYDPKT--NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             ccCCeeEeCCC--CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence            11 12233322  3366676554                  6888898888887665321111110      0110    


Q ss_pred             cCCC---EEEEEeCCCeEEEEecCCceeee
Q 002782          198 SDGS---TLISAGRDKVVNLWDLRDYSCKL  224 (882)
Q Consensus       198 ~~~~---~l~s~~~dg~i~vwd~~~~~~~~  224 (882)
                      -++.   .++.++.+|.+...|..+++.+.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence            1222   45555666666666666665443

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=1.4e-05  Score=86.52  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY  139 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~  139 (882)
                      .+.++|++++  +++++-|+.+|.|++.+... .+ .+...|+..      +.+|.+++||+.||.|.|-.+.+....+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            4577888888  78899999999999999753 33 443445443      77899999999999999999988877666


Q ss_pred             eecCCCcEEEEEEecC---CCccEEEEEeCCCcEEEEECC--CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782          140 FKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  214 (882)
Q Consensus       140 ~~~h~~~V~~l~f~~~---~~~~~l~sgs~dg~I~vwd~~--~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v  214 (882)
                      +. ...++.+++++|+   .....+++|+.-| +.++.-.  ..+.-..+....++|.++.|.  |.+++-+..+| |++
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            55 4578999999998   1223489999988 7776421  222222455667899999995  66888887777 999


Q ss_pred             EecCCceeeeeecCcc
Q 002782          215 WDLRDYSCKLTVPTYE  230 (882)
Q Consensus       215 wd~~~~~~~~~~~~~~  230 (882)
                      ||..+.+.+..++.+.
T Consensus       184 yd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPS  199 (846)
T ss_pred             EeccccceeeccCCCC
Confidence            9999988877766544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00012  Score=80.04  Aligned_cols=206  Identities=16%  Similarity=0.267  Sum_probs=140.4

Q ss_pred             ccC-CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCcc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 002782           20 YGG-GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDT-ITALALSPDDKLLFSSGHSR-----EIRVWDLST   91 (882)
Q Consensus        20 y~g-~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~-I~~l~~spd~~~las~~~dg-----~i~iwd~~~   91 (882)
                      +.| ..-++++.+..++.|... .|.+++- .-+.++.++.+... |+.+-...+..+|++.+.|+     .|+|||++.
T Consensus        23 ~~G~~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   23 FVGNAISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             CCCCceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            444 456678888888888765 6777662 23344777777776 55554444557888776654     599999863


Q ss_pred             C------eeEE--Eeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCeEEEEeecCCCcEEEEEEec
Q 002782           92 L------KCLR--SWKG-----HDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGFCTHYFKGHKGVVSSILFHP  154 (882)
Q Consensus        92 ~------~~~~--~~~~-----h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~----~~~~~~~~~~~h~~~V~~l~f~~  154 (882)
                      .      .++.  .+.+     ...|+.+++.+.+-+.+|.|-.+|.|..+.-    +.|...........+|+.++|..
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence            2      3341  2222     3568999999999999999999999988843    22333333334578999999998


Q ss_pred             CCCccEEEEEeCCCcEEEEECCCCeE-EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782          155 DTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY  229 (882)
Q Consensus       155 ~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  229 (882)
                      ++... +++++. ..|.+|.+....+ ...+..|...+.|-.+++....+++++. .-+.+|+.+......+++..
T Consensus       182 d~~s~-lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g  254 (933)
T KOG2114|consen  182 DGKSV-LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVG  254 (933)
T ss_pred             CCcee-EEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCC
Confidence            87653 333333 4599999985542 4457778888999999877665666664 45999999877766666643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.25  E-value=0.0017  Score=72.35  Aligned_cols=106  Identities=13%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEe------------------eCCCcEEEEecCCCc
Q 002782          508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA------------------SGDKTIKIWSISDGS  569 (882)
Q Consensus       508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~------------------~~d~~i~iwd~~~~~  569 (882)
                      .+++++.+|.+...|..+++.+-.....   ...++.+|  ..++.+                  ..+|.+.-.|+.+|+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            6788889999999999999887765421   11233344  223322                  246788889999998


Q ss_pred             eeeEeecCc--------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc
Q 002782          570 CLKTFEGHT--------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK  618 (882)
Q Consensus       570 ~~~~~~~h~--------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  618 (882)
                      .+.+.....        .+...-.....+..|+.++.||.|+.+|.++|+.+.+++.
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            887765321        1111111223567899999999999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.25  E-value=0.0021  Score=68.29  Aligned_cols=271  Identities=12%  Similarity=0.083  Sum_probs=126.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC------
Q 002782          104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------  177 (882)
Q Consensus       104 ~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~------  177 (882)
                      .|+.+.|.++..-|++|...|.|.||.+...+...  ..-..+-....|.+-+        ..++.-.+-|+..      
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~   72 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSL   72 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------GGGSS-SEEE-GGG--TT-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc--------ccCCCcceEEehhhCCccc
Confidence            58899999999999999999999999886543221  0000011111111100        0001111222211      


Q ss_pred             ---CeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc---------eeeEEEecCCCCCcc
Q 002782          178 ---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFD  245 (882)
Q Consensus       178 ---~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  245 (882)
                         -.+...+....++|++++.|.-| +++.|..+|.+.+.|++....+......+         .+..+.|.-      
T Consensus        73 ~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v------  145 (395)
T PF08596_consen   73 KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV------  145 (395)
T ss_dssp             SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE------
T ss_pred             ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE------
Confidence               12344455668899999998555 99999999999999999887776644333         011111100      


Q ss_pred             cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782          246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD  325 (882)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (882)
                               .....+......                                                    +++++..
T Consensus       146 ---------m~~~~D~ySSi~----------------------------------------------------L~vGTn~  164 (395)
T PF08596_consen  146 ---------MTLGGDGYSSIC----------------------------------------------------LLVGTNS  164 (395)
T ss_dssp             ---------EE-TTSSSEEEE----------------------------------------------------EEEEETT
T ss_pred             ---------EecCCCcccceE----------------------------------------------------EEEEeCC
Confidence                     000000111223                                                    4555555


Q ss_pred             CeEEEEEecccccccceeeeeeeecccCCceEEEEEeC-C-------------------CCcEEEEEEcCCcEEEEeCCC
Q 002782          326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-E-------------------EEQYLAVATNIEQVQVYDLSS  385 (882)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-------------------~~~~l~~~~~~~~i~i~d~~~  385 (882)
                      |.+..|.+..................+.+.+..+.... .                   ..+.+++......++++...+
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            55555555433322222222222233444444444321 1                   112345555568999999988


Q ss_pred             ceeeeeeeCCCcceEEeeeeee----cCCCEEEEEeecCCeEEEEeCCCceEEeeeecc----cccEEEEEEccCCC
Q 002782          386 MSCSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQ  454 (882)
Q Consensus       386 ~~~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~s~~~~  454 (882)
                      .+......  .....|-..++.    ..+...|++-..+|.++++.+..-+.+.....+    ...+....++++|.
T Consensus       245 ~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  245 SKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             --EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             Ccccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            77665544  333333332232    223445888889999999999987777655542    23344556677776

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.21  E-value=0.0012  Score=71.13  Aligned_cols=189  Identities=17%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             ceEEccCCCEEEEEeCC------------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 002782           24 PLVVSSDGSFIACACGE------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST   91 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~------------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~   91 (882)
                      .+|.+|.|..+|...+.            .|.||+. .|+.+..+.-..+.|.++.|+.+.. |++...||.++++|+. 
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-  109 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-  109 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-
Confidence            35566666666665554            5999996 5666776665558999999998655 5566789999999986 


Q ss_pred             Cee-------EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEee---cCC-----C-cEEE-EEEe
Q 002782           92 LKC-------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK---GHK-----G-VVSS-ILFH  153 (882)
Q Consensus        92 ~~~-------~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~~~~~~---~h~-----~-~V~~-l~f~  153 (882)
                      |+.       +.........+.+..+..+|-.+.+  .++.+.+-+- ........+.   +..     . .... ..++
T Consensus       110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence            333       1111222233444455556633333  3444443322 2211111111   100     0 0111 1222


Q ss_pred             cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceee
Q 002782          154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK  223 (882)
Q Consensus       154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~  223 (882)
                      .+  ....+....++.+.+-+-...+.   +. ..+++..|++||+|++++.-..+|.+.+.+.+-.+..
T Consensus       188 ~~--~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  188 SD--RVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             cC--cceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence            22  22234444445555333222111   11 2368999999999999999999999988876544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.21  E-value=0.00045  Score=75.19  Aligned_cols=194  Identities=15%  Similarity=0.131  Sum_probs=128.2

Q ss_pred             ccccccCC--ceEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC----CcEEEE
Q 002782           16 LQQFYGGG--PLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----REIRVW   87 (882)
Q Consensus        16 ~~~~y~g~--~va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d----g~i~iw   87 (882)
                      -+-+|.++  .+=++|||+.+......  .+.+.|.++.+....+.-.. .-..++++|||+++++.+.+    .++..-
T Consensus       187 t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em  265 (635)
T PRK02888        187 TGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEM  265 (635)
T ss_pred             ccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeee
Confidence            33344444  56678999988665432  58889999988877766544 33678999999999887632    223333


Q ss_pred             ECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-eEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782           88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----G-FCTHYFKGHKGVVSSILFHPDTDKSLLF  162 (882)
Q Consensus        88 d~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~----~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~  162 (882)
                      +..+...+..+....  +  -++.++|++...  .++.|.|.|..+    + ..+..+. -......+.++||+++ +++
T Consensus       266 ~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyV  337 (635)
T PRK02888        266 MAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIA  337 (635)
T ss_pred             ccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEE
Confidence            322222222111100  0  133457877665  357899999988    3 4444443 5667889999999874 666


Q ss_pred             EEeCCCcEEEEECCCCeE------------EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782          163 SGSDDATVRVWDLLAKKC------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       163 sgs~dg~I~vwd~~~~~~------------~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~  219 (882)
                      ++..+.+|.|.|+.+.+.            +....--. .....+|.++|....+.-.|..|..|++..
T Consensus       338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            777799999999987552            33333222 234568899999888888999999999986

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.00027  Score=76.02  Aligned_cols=161  Identities=13%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             CceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782           23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      ..+.++|+|+++++++++...|+.....+....-     .-..++|+++++ +|+-..++.|.|+.--+.+....++.. 
T Consensus        36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-  108 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-  108 (443)
T ss_dssp             SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-
T ss_pred             eeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-
Confidence            4799999999999988888888885444443322     235688999665 677776889999743233333334322 


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----  178 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~----  178 (882)
                      ..+..+-.   |.+|+..+. +.|.+||+++++.+..+...  +|..+.|+++++.  ++..+.+ .+.+++....    
T Consensus       109 ~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~--val~t~~-~i~il~~~~~~~~~  179 (443)
T PF04053_consen  109 FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL--VALVTKD-SIYILKYNLEAVAA  179 (443)
T ss_dssp             S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE--EEEE-S--SEEEEEE-HHHHHH
T ss_pred             cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE--EEEEeCC-eEEEEEecchhccc
Confidence            23444433   887877765 48999999999999988733  4899999998764  5555554 5777765433    


Q ss_pred             -------eEEEEecCcccceEEEEEccC
Q 002782          179 -------KCVATLDKHFSRVTSMAITSD  199 (882)
Q Consensus       179 -------~~~~~l~~h~~~v~~l~~s~~  199 (882)
                             ..+..+..-...|.+.+|..+
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             ccccCchhceEEEEEecceeEEEEEEcC
Confidence                   022233222456777788655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.00029  Score=75.71  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC-  136 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~-  136 (882)
                      |...|.--+++..+++++.|+..|.+++|+-..+..... ..+-.+.+..+..|++..++|.|+..|.|.|+-+..+.. 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            445566666777899999999999999999777654432 233456677788899999999999999999998865321 


Q ss_pred             ----EEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----eEEEEecCcccceEEEEEc
Q 002782          137 ----THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAIT  197 (882)
Q Consensus       137 ----~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~v~~l~~s  197 (882)
                          +.. -+.|...|++++|++++..  +++|...|.|..-.+.+.    ...+.+-.-.+.|..+.+.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k--~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMK--LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccE--EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence                111 1247889999999999877  999999999999988772    1122333344566666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.0033  Score=67.79  Aligned_cols=221  Identities=12%  Similarity=0.127  Sum_probs=121.6

Q ss_pred             ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEE-ecCCCCC
Q 002782          398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSD  476 (882)
Q Consensus       398 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~w-d~~~~~~  476 (882)
                      .+..+.  .+|+|+. +++ +.+|...++.....+....     +.-...+|.+.+.  +++-...++|.++ ++...  
T Consensus        34 ~p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~--  100 (443)
T PF04053_consen   34 YPQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE--  100 (443)
T ss_dssp             --SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE---
T ss_pred             CCeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc--EEEEECCCeEEEEEcCccc--
Confidence            355565  8899987 444 5688888888554443322     3344567887543  6777778899996 33211  


Q ss_pred             CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782          477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  556 (882)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  556 (882)
                               ....+. ....+..+-.   |.+|+..+.+ .|.+||..+++.+..+...  +|..+.|++++.+++..+.
T Consensus       101 ---------~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  101 ---------VVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             ---------TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred             ---------cceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence                     000000 1112233322   8888877654 7999999999999988743  4899999999999999876


Q ss_pred             CCcEEEEecCCC-----------ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEE
Q 002782          557 DKTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA  625 (882)
Q Consensus       557 d~~i~iwd~~~~-----------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  625 (882)
                      + ++.|++....           .....+..-...|.+.+|..+  .++-.... .++.  +..|+.- ++..-..++.=
T Consensus       165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~~~yl  237 (443)
T PF04053_consen  165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDKPLYL  237 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS--EE
T ss_pred             C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCCceEE
Confidence            4 6777764322           133333322567888888866  44333333 7776  4455532 22222456777


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          626 LAVGKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      +...+..+.+.....|+.+..+.+.....
T Consensus       238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~~  266 (443)
T PF04053_consen  238 LGYLPKENRLYLIDRDGNVISYELDLSEL  266 (443)
T ss_dssp             EEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred             EEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence            78888888999999999999998887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.11  E-value=0.0017  Score=63.70  Aligned_cols=189  Identities=15%  Similarity=0.213  Sum_probs=114.5

Q ss_pred             CceEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------
Q 002782           23 GPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK------   93 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~------   93 (882)
                      ..++|.||.+.|++..++  .|..++. +|+.++.+.-. .+..-.+++..++.++++--+++.+.++++....      
T Consensus        25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~  103 (248)
T PF06977_consen   25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRA  103 (248)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EE
T ss_pred             cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchh
Confidence            369999998888877766  6888886 58888776533 2456788898888887777678999999883321      


Q ss_pred             eEEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEe--------ecCCCcEEEEEEecCCC
Q 002782           94 CLRSWK-----GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYF--------KGHKGVVSSILFHPDTD  157 (882)
Q Consensus        94 ~~~~~~-----~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~---~~~~~~~--------~~h~~~V~~l~f~~~~~  157 (882)
                      ....+.     .++..+-.++|+|.++.|..+-...-..++.+..   +..+...        ......+.+++++|...
T Consensus       104 ~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~  183 (248)
T PF06977_consen  104 DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTG  183 (248)
T ss_dssp             EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTT
T ss_pred             hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCC
Confidence            112221     2556799999999988888877666666776653   2222111        12345689999999855


Q ss_pred             ccEEEEEeCCCcEEEEECCCCeEEEEecCcc---------cceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782          158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLW  215 (882)
Q Consensus       158 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~---------~~v~~l~~s~~~~~l~s~~~dg~i~vw  215 (882)
                       .+++....+..|..+| .+|+.+..+.-..         ...-.++|.++|+ |+..+.-+..++|
T Consensus       184 -~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  184 -HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             -eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence             5666678888999999 6777665543221         3678999999985 5555566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.0015  Score=70.01  Aligned_cols=208  Identities=20%  Similarity=0.242  Sum_probs=152.2

Q ss_pred             cCCceEEccCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeE
Q 002782           21 GGGPLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCL   95 (882)
Q Consensus        21 ~g~~va~s~dg~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~   95 (882)
                      .+..+++++++..+++..  .+.|.+.|..+.+..+...-.. .-..++++|+++.+.++..   ++++.+.|-.+++.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            334789999999777776  4589999988888777665433 4578999999988877655   689999999999988


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-E---eecCCCcEEEEEEecCCCccEEEEEeC-CCc
Q 002782           96 RSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTH-Y---FKGHKGVVSSILFHPDTDKSLLFSGSD-DAT  169 (882)
Q Consensus        96 ~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~-~---~~~h~~~V~~l~f~~~~~~~~l~sgs~-dg~  169 (882)
                      .....-..+ ..++++|+|+.+.... .++.|.+.|..+..... .   ...-...-..+.+.|++...+++-... ++.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            886655556 8999999999776655 67999999987766553 1   011223346678899987533333222 378


Q ss_pred             EEEEECCCCeEEEE-ecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcc
Q 002782          170 VRVWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYE  230 (882)
Q Consensus       170 I~vwd~~~~~~~~~-l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~  230 (882)
                      +...|..++..... ..........+.++|+|..+.+... .+.+.+.|..+.......+...
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~  295 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN  295 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence            99999998887765 2221115667889999999988844 4889999998887776655443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.00031  Score=75.29  Aligned_cols=180  Identities=21%  Similarity=0.237  Sum_probs=113.2

Q ss_pred             eEEccCCCEEEEEe---CC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeeEE
Q 002782           25 LVVSSDGSFIACAC---GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSR--EIRVWDLSTLKCLR   96 (882)
Q Consensus        25 va~s~dg~~la~~~---~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~dg--~i~iwd~~~~~~~~   96 (882)
                      -+|+|+++.+++..   +.  .+.++|+++++....+. -...-..-+|||||+.||.+ ..||  .|.+.|+.++...+
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~  276 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR  276 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence            56889999877763   22  59999999987555443 12223557999999988765 4455  46666877766333


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc--EE
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGAD-R--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT--VR  171 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~d-g--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~--I~  171 (882)
                       +..-.+.-..=.|+|||++++..+.. |  .|.+.|++.+.. ..+....+.-..-.|+||++.. ++....+|.  |.
T Consensus       277 -Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i-~~~~~~~g~~~i~  353 (425)
T COG0823         277 -LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKI-VFESSSGGQWDID  353 (425)
T ss_pred             -cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEE-EEEeccCCceeeE
Confidence             54433444467899999999987643 3  477777777664 3333333333377799998863 333333455  66


Q ss_pred             EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782          172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      +.|+.++...+.+. +......-+|.++|..++..+..
T Consensus       354 ~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         354 KNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            66766665433332 23334455677888877765543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.86  E-value=0.048  Score=56.36  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             EEEcCCCceeeeecCCCccE-----EEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC
Q 002782           44 IVDLSNASIKSTIEGGSDTI-----TALALSPDDKLLFSSGH-S--REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG  115 (882)
Q Consensus        44 i~d~~~~~~~~~l~~~~~~I-----~~l~~spd~~~las~~~-d--g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~  115 (882)
                      --|..||..+..|..+...-     +.=+|.+||+.|+.++. +  ..+.+-|+.+++..+.-.+..........+|+++
T Consensus        14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~   93 (386)
T PF14583_consen   14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR   93 (386)
T ss_dssp             EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS
T ss_pred             EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC
Confidence            34778888777776433221     22367889977665544 4  4677889999886665443223233466778888


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe----------------------CCCcEEEE
Q 002782          116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------------------DDATVRVW  173 (882)
Q Consensus       116 ~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs----------------------~dg~I~vw  173 (882)
                      .++-......|+--|+.+.+....+.....-+-...|..+.+...++..-                      ..+.|.--
T Consensus        94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            88776666789999999987666666566666667776554443343321                      12345555


Q ss_pred             ECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782          174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       174 d~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      |+.+|+....+. ....+..+.|+|....++.=|..|
T Consensus       174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEG  209 (386)
T PF14583_consen  174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEG  209 (386)
T ss_dssp             ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S
T ss_pred             ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccC
Confidence            666666443333 334566778888666666555443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.027  Score=60.49  Aligned_cols=235  Identities=17%  Similarity=0.107  Sum_probs=151.8

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  485 (882)
                      ..+.+..+.++-.....+...+................-..+++++.+....+....++.|.+.|......         
T Consensus        38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------  108 (381)
T COG3391          38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------  108 (381)
T ss_pred             EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------
Confidence            55666543444433334555554422222211111134457788888887777777789999999554321         


Q ss_pred             chhhhhhcCCCeeEEEEcCCCcEEEEEcC---CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEE
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK  561 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~  561 (882)
                        .....-......++++|+++.+.++..   ++++.+.|..+.+.......-..+ ..++++|+|+.++.+. .++.|.
T Consensus       109 --~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         109 --LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             --eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence              111111225678999999977776655   688999999999888885544445 8999999999666654 789999


Q ss_pred             EEecCCCceee-E---eecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCC-ceEEEEEcCCCC
Q 002782          562 IWSISDGSCLK-T---FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHED-KIWALAVGKKTE  633 (882)
Q Consensus       562 iwd~~~~~~~~-~---~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~  633 (882)
                      +.|.......+ .   ...-......+.+.++|.++......   +.+...|..++.....-..-.. ....+.++|+|.
T Consensus       186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~  265 (381)
T COG3391         186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK  265 (381)
T ss_pred             EEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence            99976655543 1   11122334568899999977655443   5899999988887765221122 456678999999


Q ss_pred             EEEEEeC-CCCEEEEECCCH
Q 002782          634 MFATGGS-DALVNLWHDSTA  652 (882)
Q Consensus       634 ~l~s~~~-dg~i~iw~~~~~  652 (882)
                      .+.+... .+.+.+-|..+.
T Consensus       266 ~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         266 AAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEEEEecCCCeEEEEeCCCC
Confidence            8887744 366777666653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.85  E-value=0.0038  Score=66.36  Aligned_cols=276  Identities=12%  Similarity=0.122  Sum_probs=136.9

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee--eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC--
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--  430 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--  430 (882)
                      .|..+.|.+ +..-|+++...|.|.+|.....+...  ....+.+    .      .... +  ...++.-.+-|+..  
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~----~------~~~~-~--~~~~~~~~l~di~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLD----Y------NFRR-F--SLNNSPGKLTDISDRA   68 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------------S-----GGGSS-SEEE-GGG-
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccC----c------cccc-c--cccCCCcceEEehhhC
Confidence            456677766 55678889999999998765432221  0000000    0      0000 0  00011111222211  


Q ss_pred             -------ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782          431 -------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  503 (882)
Q Consensus       431 -------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  503 (882)
                             -.+...+....++|++++.|.-|  |++.|..+|.+.+.|++...-....  ..............++++.|+
T Consensus        69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~--~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE--NIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             -TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE--EGGG--T-SS----EEEEEEE
T ss_pred             CcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec--cccccccccccccCeeEEEEE
Confidence                   12333455568999999998665  8999999999999999754211000  000111122234567888887


Q ss_pred             C-----CC---cEEEEEcCCCcEEEEeCC--C-ceeE----EEEecccCceEEEE-EcCC--------------------
Q 002782          504 P-----ND---SLVCTGSQDRTACVWRLP--D-LVSV----VTFRGHKRGIWSVE-FSPV--------------------  547 (882)
Q Consensus       504 ~-----~~---~~la~~s~dg~i~iwd~~--~-~~~~----~~~~~h~~~v~~l~-~s~~--------------------  547 (882)
                      .     |+   -.+++|+..|.+.+|.+.  . +...    .....+.++|..+. |+.+                    
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence            3     33   478899999999999874  1 2111    12223556666655 3221                    


Q ss_pred             CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE-----eCCCEEEEeecCCeEEEEEcCCCeeEEEeccCC--
Q 002782          548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL-----TRGAQIVSCGADGLVKLWTVRTGECIATYDKHE--  620 (882)
Q Consensus       548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-----~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--  620 (882)
                      -+-++....+..+|++...+.+.........-....+.+.     ..+..|++-..+|.|+++.+..-+.+....-+.  
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~  304 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL  304 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence            0123344456889999998887765554332333445553     356788899999999999999988887776432  


Q ss_pred             --CceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          621 --DKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       621 --~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                        ..+....++++|..++-.+.. .+.++.+
T Consensus       305 d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  305 DSRRLSSSSISRNGDIFYWTGPS-EIQLFSV  334 (395)
T ss_dssp             -HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred             ccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence              234556788999877665543 3444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.85  E-value=0.013  Score=57.57  Aligned_cols=211  Identities=11%  Similarity=0.134  Sum_probs=115.8

Q ss_pred             eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782          346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVR  424 (882)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  424 (882)
                      ...+.+...++..++|.|+.+.++++....+.|..++.. ++.++.+.-. .+..-.++  +..++.. +++.-.++.+.
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~--y~g~~~~-vl~~Er~~~L~   89 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGIT--YLGNGRY-VLSEERDQRLY   89 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEE--E-STTEE-EEEETTTTEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEE--EECCCEE-EEEEcCCCcEE
Confidence            456777888899999999889999999999999999974 6666665432 24455555  5455543 55555688898


Q ss_pred             EEeCCCce------EEeee-----ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc-ccccchhhhhh
Q 002782          425 LWDSESRC------CVGVG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAA  492 (882)
Q Consensus       425 iwd~~~~~------~~~~~-----~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~  492 (882)
                      ++++....      ....+     ..+...+-.++|.+.++.++ .+-+.....+|.+.......... ...........
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            88873211      11111     13556789999999877544 45666667777776421000000 00001111233


Q ss_pred             cCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCCCceeEEEEeccc---------CceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782          493 HGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKI  562 (882)
Q Consensus       493 ~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~d~~i~i  562 (882)
                      ....+.+++++|. |.+++.+..++.|..+| .+|+.+..+.-..         .....|+|.++|++.+++ .-+..++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            4457889999995 56777778888899999 6666665544221         357899999998766554 4444443


Q ss_pred             E
Q 002782          563 W  563 (882)
Q Consensus       563 w  563 (882)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            3

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.85  E-value=0.089  Score=58.94  Aligned_cols=109  Identities=18%  Similarity=0.136  Sum_probs=66.7

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCceeeeecCCC-ccEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782           30 DGSFIACACGESINIVDLSNASIKSTIEGGS-DTIT---A-------LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~-~~I~---~-------l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~   98 (882)
                      +|..+++...+.|.-+|..+|+.+-.+.... ..+.   +       +++.  +..++.++.++.|.-.|..+|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4544444445688999999999886654311 1111   1       1222  346777888999999999999998776


Q ss_pred             ecCCCC-EEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeEEEEee
Q 002782           99 KGHDGP-AIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFK  141 (882)
Q Consensus        99 ~~h~~~-V~~l~fs~---~~~~lasg~------~dg~v~vwd~~~~~~~~~~~  141 (882)
                      ...... -..+.-+|   ++ .++++.      .+|.|.-+|.++|+.+..+.
T Consensus       147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            531110 00111122   34 455543      26899999999998876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.00055  Score=72.62  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             EEEEEcCCCceee----eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782           42 INIVDLSNASIKS----TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL  117 (882)
Q Consensus        42 I~i~d~~~~~~~~----~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l  117 (882)
                      -.+|+...++..+    ++ .....|.|.+++|+...|+.|+.||.|.+||...+...  +.-..-..+.++|+|+|..+
T Consensus       238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEE
Confidence            5677776554321    22 35678999999999999999999999999998776433  22345677899999999999


Q ss_pred             EEEeCCCcEEEEECCCC
Q 002782          118 ATAGADRKVLVWDVDGG  134 (882)
Q Consensus       118 asg~~dg~v~vwd~~~~  134 (882)
                      ++|+..|.+.+||+.-+
T Consensus       315 ~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  315 VVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCceEEEEEeecC
Confidence            99999999999998543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.083  Score=57.17  Aligned_cols=214  Identities=12%  Similarity=0.059  Sum_probs=107.5

Q ss_pred             cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce------EEeeeecccccEEEEEEc
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS  450 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~v~~s  450 (882)
                      .|.+|+....... .+.-..+.+.++.  |..+. . ++.-..||.++++|+....      .+....-....+....+.
T Consensus        62 ~I~iys~sG~ll~-~i~w~~~~iv~~~--wt~~e-~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSGKLLS-SIPWDSGRIVGMG--WTDDE-E-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCCCEeE-EEEECCCCEEEEE--ECCCC-e-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence            3777776544332 3322227777886  65644 4 5666789999999986433      111111111222222333


Q ss_pred             cCCCcEEEEeeCCCeEEEEecCCCCCCCC-Ccccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce
Q 002782          451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  527 (882)
Q Consensus       451 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~  527 (882)
                      .+|  + +.-..++.+.+.  ........ ......+....  ..+........++.+....+....++.+.+.+-...+
T Consensus       137 ~~G--i-vvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  137 KNG--I-VVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCC--E-EEECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            333  2 323334444333  22211100 00000000000  0011110113344555555555555666644433221


Q ss_pred             eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecC-cCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782          528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      .   +. ..+++..+++||+++++|.-..+|.+.+.+.+-.+.+..+... ......+.|.-++..++.-  ...|.+..
T Consensus       212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            1   11 3468999999999999999999999999987666666666543 3456677777654333332  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.0025  Score=68.43  Aligned_cols=181  Identities=16%  Similarity=0.099  Sum_probs=107.9

Q ss_pred             eecCCCEEEEEeecC---CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782          406 ALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM  482 (882)
Q Consensus       406 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  482 (882)
                      +++++..+....-..   ..+.++++.++....... ..+.-..-+|+|+|+.++++...||...+|-++.....     
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----  273 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----  273 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence            677777633332222   458889998876544433 22333456899999988889888988776655432211     


Q ss_pred             cccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC-C
Q 002782          483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K  558 (882)
Q Consensus       483 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~  558 (882)
                          ...+....+.-..-.|+|||+.++..+. .|  .|.+++.+.... ..+......-..-.|+|||++++..+.. |
T Consensus       274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence                0111111122236689999998886654 34  477777766654 2333233333377899999999887743 4


Q ss_pred             c--EEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782          559 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  598 (882)
Q Consensus       559 ~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  598 (882)
                      .  |.+.|+.++...+.+. +......-.|.++|..+...+.
T Consensus       349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            3  6777776665443333 3333334567788877765544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.74  E-value=0.034  Score=61.10  Aligned_cols=204  Identities=18%  Similarity=0.247  Sum_probs=114.8

Q ss_pred             ccCCceEEccCCCEEEEEeC--C----eEEEEEcCCCceeee-ecCCCccEEEEEEcCCCCEEEEEeC-----------C
Q 002782           20 YGGGPLVVSSDGSFIACACG--E----SINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGH-----------S   81 (882)
Q Consensus        20 y~g~~va~s~dg~~la~~~~--~----~I~i~d~~~~~~~~~-l~~~~~~I~~l~~spd~~~las~~~-----------d   81 (882)
                      +..+..++||||+++|++..  +    .++++|+++|+.+.. +...  .-..++|.+|++.++....           .
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            34457889999999998742  2    599999999986643 2221  1134999999988765543           2


Q ss_pred             CcEEEEECCCCee--EEEeecCCCC--EEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC----eEEEEeecCCCcEEE
Q 002782           82 REIRVWDLSTLKC--LRSWKGHDGP--AIGMACHPSGGLLATAGA---D-RKVLVWDVDGG----FCTHYFKGHKGVVSS  149 (882)
Q Consensus        82 g~i~iwd~~~~~~--~~~~~~h~~~--V~~l~fs~~~~~lasg~~---d-g~v~vwd~~~~----~~~~~~~~h~~~V~~  149 (882)
                      ..|+.|.+.+...  ...+.....+  ...+..++|+++|+..+.   + ..+.+-|...+    .....+......+..
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            2488888877642  2444443333  678899999999876442   2 45788888764    223333333333433


Q ss_pred             EEEecCCCccEEEEE--eCCCcEEEEECCCCeE---EEEecCccc--ceEEEEEccCCCEEEEEeC-CC--eEEEEecCC
Q 002782          150 ILFHPDTDKSLLFSG--SDDATVRVWDLLAKKC---VATLDKHFS--RVTSMAITSDGSTLISAGR-DK--VVNLWDLRD  219 (882)
Q Consensus       150 l~f~~~~~~~~l~sg--s~dg~I~vwd~~~~~~---~~~l~~h~~--~v~~l~~s~~~~~l~s~~~-dg--~i~vwd~~~  219 (882)
                      ..-+. ++..++.|.  ...+.|...++.+...   ...+..|..  .+..+..  .+.+|+.... ++  .|+++++..
T Consensus       282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~  358 (414)
T PF02897_consen  282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD  358 (414)
T ss_dssp             EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred             EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence            33233 243334343  2346677778776652   334555554  3444444  4555555443 33  578888883


Q ss_pred             ceeeeeecC
Q 002782          220 YSCKLTVPT  228 (882)
Q Consensus       220 ~~~~~~~~~  228 (882)
                      ......++.
T Consensus       359 ~~~~~~~~~  367 (414)
T PF02897_consen  359 GKESREIPL  367 (414)
T ss_dssp             TEEEEEEES
T ss_pred             CcEEeeecC
Confidence            344444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.73  E-value=0.078  Score=54.88  Aligned_cols=196  Identities=19%  Similarity=0.244  Sum_probs=102.0

Q ss_pred             eEEccCCCEEEEEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782           25 LVVSSDGSFIACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG  100 (882)
Q Consensus        25 va~s~dg~~la~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~  100 (882)
                      =+|++||+.|+.+++    ..+.+.|+.+++..+.-.+.........++|+++.++-...+..|+-.|+.+.+....+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            456789977777654    2799999999998776665433333567789888887665667899999999887666666


Q ss_pred             CCCCEEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 002782          101 HDGPAIGMAC--HPSGGLLATAGA----------------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT  156 (882)
Q Consensus       101 h~~~V~~l~f--s~~~~~lasg~~----------------------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~  156 (882)
                      ....+-...|  +.|+..++-.-.                      ...|.--|+.+|+....+. -...+..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            6665654555  446666554321                      2356666788877554444 45567788899975


Q ss_pred             CccEEEEEeCCC-----cEEEEECC-CCeEEEEecCcc--cceEEEEEccCCCEEEEEe-----CCCeEEEEecCCceee
Q 002782          157 DKSLLFSGSDDA-----TVRVWDLL-AKKCVATLDKHF--SRVTSMAITSDGSTLISAG-----RDKVVNLWDLRDYSCK  223 (882)
Q Consensus       157 ~~~~l~sgs~dg-----~I~vwd~~-~~~~~~~l~~h~--~~v~~l~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~  223 (882)
                      ..  +++-+..|     .-|+|-+. .+.....+..|.  ..+..=-|.|||..+.--+     .+..|.-+|..+++..
T Consensus       200 p~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  200 PT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             EE--EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CC--EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            54  44433222     12556443 233333443332  2445556899998776543     2446777788776543

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.71  E-value=0.00011  Score=71.43  Aligned_cols=89  Identities=20%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             HHHHHHHhccC------HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccC---hHhHHhhhccchhhH
Q 002782          712 LQIEKALHALG------KEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKG---ISDVLEGLIPYTQRH  782 (882)
Q Consensus       712 ~~l~~~~~~l~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~l~~l~~~~~~~  782 (882)
                      ..++-.|+.|+      .+++..+++|+..+....+.++++|.+|...|+.|+ +.|...+.   +.+.|+.|....++-
T Consensus       139 S~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vFLk~Hg-d~i~~~~~~~~L~~~l~~l~~~q~~~  217 (237)
T PF04192_consen  139 SAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVFLKVHG-DVIMESEEEEELREALEELREAQESE  217 (237)
T ss_pred             hHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            36777778887      778899999999999999999999999999999999 88988888   999999999999999


Q ss_pred             HHHHHHHHhhhhhhheeccccCCCC
Q 002782          783 FSRIDRLVRSTFLLDYTLTGMSVIE  807 (882)
Q Consensus       783 ~~~~~~l~~~~~~~~~~~~~~~~~~  807 (882)
                      +.||++|+      +|++.-++|++
T Consensus       218 w~~L~~l~------~~~~cvv~fl~  236 (237)
T PF04192_consen  218 WKRLDDLF------QYCSCVVSFLR  236 (237)
T ss_pred             HHHHHHHH------hhhhhhhhhhc
Confidence            99999999      77776666553

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.71  E-value=0.02  Score=60.24  Aligned_cols=218  Identities=15%  Similarity=0.160  Sum_probs=123.8

Q ss_pred             eEEEEeCCCceEEeeeecc-cccEEEE---EEccC---CCcEEEEeeC----------CCeEEEEecCCCCCCCCCcccc
Q 002782          422 SVRLWDSESRCCVGVGTGH-MGAVGAV---AFSKK---LQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNL  484 (882)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~-~~~v~~v---~~s~~---~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~  484 (882)
                      .|++.|..+.+.+..+.-. ...+.++   .+..+   ...+++.|+.          .|.|.++++....   .....+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~l   79 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFKL   79 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceEE
Confidence            5777777776666554321 2233333   33322   1457776653          2889999988630   000111


Q ss_pred             cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce-eEEEEe-cccCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782          485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKI  562 (882)
Q Consensus       485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d~~i~i  562 (882)
                      +... .....++|++++-- +++++++.  ++.|.+|++...+ ....-. .....+.++...  +++++.|.....+.+
T Consensus        80 ~~i~-~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   80 KLIH-STEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEE-EEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEE-EEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence            1111 22346788888866 55544433  4789999998777 333222 123355555554  679999998888888


Q ss_pred             EecCC-CceeeEee--cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC-------Ce----eEEEeccCCCceEEE--
Q 002782          563 WSISD-GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------GE----CIATYDKHEDKIWAL--  626 (882)
Q Consensus       563 wd~~~-~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-------~~----~~~~~~~h~~~v~~l--  626 (882)
                      +..+. +..+..+.  .....++++.|.++++.++.++.+|.+.++....       +.    .+..+. ..+.|+++  
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~  232 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR  232 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence            86543 33233322  2345688899997778999999999999998762       22    223332 34667777  


Q ss_pred             -EEcC--CC------CEEEEEeCCCCEEEEEC
Q 002782          627 -AVGK--KT------EMFATGGSDALVNLWHD  649 (882)
Q Consensus       627 -~~s~--~~------~~l~s~~~dg~i~iw~~  649 (882)
                       .+.|  .+      ..++-++.+|.|...-.
T Consensus       233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  233 GSLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             --SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence             4444  22      24888889999885433

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.69  E-value=0.0025  Score=71.60  Aligned_cols=179  Identities=16%  Similarity=0.167  Sum_probs=106.4

Q ss_pred             CceEEccCCCEEEEEeC------C---eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------------
Q 002782           23 GPLVVSSDGSFIACACG------E---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------------   81 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~------~---~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------------   81 (882)
                      +..++||||+.+|+...      +   .|.+++. .+.......+.  ..++-.|+|||+.|++....            
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            37889999999998871      2   5666675 33333334443  37899999999988876532            


Q ss_pred             CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EECCCCeE-E---EEee-cCCCcEEEEEEe
Q 002782           82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV---WDVDGGFC-T---HYFK-GHKGVVSSILFH  153 (882)
Q Consensus        82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v---wd~~~~~~-~---~~~~-~h~~~V~~l~f~  153 (882)
                      +.+.+.++..+....   ...+.|..+.|||||.++|... ++.|.|   -....|.. +   ..+. +-...+..+.|.
T Consensus       430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            233333444333322   2356799999999999999876 477777   44445541 1   1122 233346889999


Q ss_pred             cCCCccEEEEEeCCCcEEEEECCC-CeEEEEecC--cccceEEEEEccCCCEEEEEeCCCeEE
Q 002782          154 PDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVN  213 (882)
Q Consensus       154 ~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~  213 (882)
                      .++.   |+.+..++.-.+|.+.- |.....+..  ...++.+++-+++  .++....+|.+.
T Consensus       506 ~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        506 TGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            8865   44555555555565432 222112222  2456777766653  466666666443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.68  E-value=0.12  Score=57.82  Aligned_cols=61  Identities=15%  Similarity=0.266  Sum_probs=42.5

Q ss_pred             CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC
Q 002782          558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH  619 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  619 (882)
                      |.|.-+|+.+|+.+...+... +...-.+.-.|..++.++.||.++.+|.++|+.+..++..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            457778888888777665322 1111122335567778888999999999999999888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.63  E-value=0.0098  Score=62.93  Aligned_cols=90  Identities=16%  Similarity=0.294  Sum_probs=63.5

Q ss_pred             chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE-EEE-cCCC---------------
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS-VEF-SPVD---------------  548 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~-s~~~---------------  548 (882)
                      ....+......+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.-.. +.. .+..               
T Consensus       299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            33444555667899999999999999888899999999999888888875443111 111 1111               


Q ss_pred             -C-EEEEeeCCCcEEEEecCCCceeeEee
Q 002782          549 -Q-VVITASGDKTIKIWSISDGSCLKTFE  575 (882)
Q Consensus       549 -~-~l~s~~~d~~i~iwd~~~~~~~~~~~  575 (882)
                       . +++-+-.-|.|.||+++.|..+..+.
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence             1 33445667899999999888777664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.61  E-value=0.08  Score=56.19  Aligned_cols=88  Identities=23%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             ceEEccCCCEEEEEeCCeEEE----EEc-C----CCceeeeecC----C-CccEEEEEEc-----------CCCCEEEEE
Q 002782           24 PLVVSSDGSFIACACGESINI----VDL-S----NASIKSTIEG----G-SDTITALALS-----------PDDKLLFSS   78 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i----~d~-~----~~~~~~~l~~----~-~~~I~~l~~s-----------pd~~~las~   78 (882)
                      .++++|+|.+||.+.++.+.|    |+. .    .+.......+    . .+.||++.+-           ||...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            588999999999999885444    432 1    1222222221    1 1578777764           456789999


Q ss_pred             eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcC
Q 002782           79 GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP  112 (882)
Q Consensus        79 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~  112 (882)
                      ..+|.|++|.- +|.++..-.-|..+|..+.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999995 7777776667888888888754

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.60  E-value=2.3e-05  Score=82.61  Aligned_cols=198  Identities=19%  Similarity=0.248  Sum_probs=128.5

Q ss_pred             cEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEc----CCC
Q 002782          443 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR  516 (882)
Q Consensus       443 ~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s----~dg  516 (882)
                      .+.|+++.-+. +.+++.|..+|.|-+-.+......        ......++....++++|++ |...||.|-    .|.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            34455544332 347888999999999887654221        2334456777899999998 556777763    355


Q ss_pred             cEEEEeCCCc--eeE--EEEec-ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe-C
Q 002782          517 TACVWRLPDL--VSV--VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-R  589 (882)
Q Consensus       517 ~i~iwd~~~~--~~~--~~~~~-h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~  589 (882)
                      .+.|||+.++  .+.  ..+.+ -.....+++|-.+.+++.+|.....+.++|++.. .....+  .+..+..+...| .
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS  207 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence            7999999876  222  12222 3445668999999999999999999999998632 111122  233455677778 6


Q ss_pred             CCEEEEeecCCeEEEEE-cCCCe-eEEEeccC----CCceEEEEEcCCCC-EEEEEeC-CCCEEEEECCC
Q 002782          590 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDST  651 (882)
Q Consensus       590 g~~l~s~~~dg~i~iwd-~~~~~-~~~~~~~h----~~~v~~l~~s~~~~-~l~s~~~-dg~i~iw~~~~  651 (882)
                      +.|+++-. ||.|-+|| ..+-+ ++.++...    ...+..++|.|... .+++... .++|+++++..
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            77887766 99999999 43333 22222211    23489999998643 4444444 46788887653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.024  Score=58.02  Aligned_cols=223  Identities=13%  Similarity=0.060  Sum_probs=131.8

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  485 (882)
                      +.++...++.+--..+.|.-|+..++.... +... +.+.++..-..+. .|+++...  +.+++.......     ...
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p-~~~~~~~~~d~~g-~Lv~~~~g--~~~~~~~~~~~~-----t~~  101 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP-GGFSSGALIDAGG-RLIACEHG--VRLLDPDTGGKI-----TLL  101 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECC-CCcccceeecCCC-eEEEEccc--cEEEeccCCcee-----EEe
Confidence            566777667777778888888887664322 2222 2233333333333 34444332  445554322110     000


Q ss_pred             chhhhhhcCCCeeEEEEcCCCcEEEEEcC-----C----CcEEEEeCC-CceeEEEEecccCceEEEEEcCCCCEEEEee
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITAS  555 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~-----d----g~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  555 (882)
                      ............+...+.|+|.+.++...     .    ..-.+|.+. .+.....+..+-..-+.|+||||++.|+.+.
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence            00000111235678889999988776544     1    112455554 5666666666666678999999998888776


Q ss_pred             C-CCcEEEEecCC--Cce-----eeEeecCcCCEEEEEEEeCCCEEEEeecCC-eEEEEEcCCCeeEEEeccCCCceEEE
Q 002782          556 G-DKTIKIWSISD--GSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWAL  626 (882)
Q Consensus       556 ~-d~~i~iwd~~~--~~~-----~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l  626 (882)
                      . .+.|.-|++..  +..     ...+..+.+..-.++...+|.+-+++..+| .|.+|+.+ |+.+..+..+...++++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            5 47788887752  211     112222445666677888888776555554 99999987 99999998877888889


Q ss_pred             EEc-CCCCEEEEEe
Q 002782          627 AVG-KKTEMFATGG  639 (882)
Q Consensus       627 ~~s-~~~~~l~s~~  639 (882)
                      +|- ++.+.|...+
T Consensus       261 ~FgG~~~~~L~iTs  274 (307)
T COG3386         261 AFGGPDLNTLYITS  274 (307)
T ss_pred             eEeCCCcCEEEEEe
Confidence            885 4445444333

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.56  E-value=0.024  Score=59.66  Aligned_cols=177  Identities=18%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             CcEEEEeCCCceeeeeeeC-CCcceEEeeeeeecCC----CEEEEEeec----------CCeEEEEeCCCc----eEEee
Q 002782          376 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR----CCVGV  436 (882)
Q Consensus       376 ~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~  436 (882)
                      ..|++.|..+...+..+.- ....+.++..+..+.+    ..++++|+.          .|.+.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4678888887776655443 3345666665454542    455777653          289999999884    12221


Q ss_pred             --eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC
Q 002782          437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  514 (882)
Q Consensus       437 --~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~  514 (882)
                        -....++|++++--.  . .++++ ..+.|.+|++....       .+....... ....+.++..  .++++++|+.
T Consensus        82 i~~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~-------~l~~~~~~~-~~~~i~sl~~--~~~~I~vgD~  147 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSK-------TLLKKAFYD-SPFYITSLSV--FKNYILVGDA  147 (321)
T ss_dssp             EEEEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTS-------SEEEEEEE--BSSSEEEEEE--ETTEEEEEES
T ss_pred             EEEEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcc-------cchhhheec-ceEEEEEEec--cccEEEEEEc
Confidence              224578899888773  2 33333 34889999998653       011111111 1124444444  4669999998


Q ss_pred             CCcEEEEeCCC-ceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782          515 DRTACVWRLPD-LVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       515 dg~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      ...+.++.... ...+..+.  .....++++.|-+++..++.+..+|.+.++...
T Consensus       148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            88888875443 22222222  245568899998777799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.012  Score=67.11  Aligned_cols=135  Identities=19%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             eCCCcEEEEECCCCeeEEEeecCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--eEEEE-ee--cCCCcE
Q 002782           79 GHSREIRVWDLSTLKCLRSWKGHDGP-AIGMACHP-----SGGLLATAGADRKVLVWDVDGG--FCTHY-FK--GHKGVV  147 (882)
Q Consensus        79 ~~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~fs~-----~~~~lasg~~dg~v~vwd~~~~--~~~~~-~~--~h~~~V  147 (882)
                      .....|+-.|++.|+.+..|+.|... |..++=+.     +..-...|-.+..+..||.+-.  +++.. .+  ......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34578999999999999999988744 55554321     1234566777889999999642  23211 11  234567


Q ss_pred             EEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       148 ~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                      +|++-+.+|.   +|.|+.+|.||+||-...+....+++-..+|.++..+.||++++..+ +..+.+++.
T Consensus       581 s~~aTt~~G~---iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDGY---IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCce---EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            7887776654   99999999999999544444455677778999999999999998877 455777664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.045  Score=56.03  Aligned_cols=208  Identities=14%  Similarity=0.121  Sum_probs=128.1

Q ss_pred             eEEccCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec--
Q 002782           25 LVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG--  100 (882)
Q Consensus        25 va~s~dg~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~--  100 (882)
                      -.|.++...|+...  ++.|.-|+..+|+.. .+.. ...++++..-.++..|+++..  -+.+++.+++..+..+..  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence            45667777655554  448999999877543 2322 233455554444555555543  467777766665333321  


Q ss_pred             ---CCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC
Q 002782          101 ---HDGPAIGMACHPSGGLLATAGA---------DRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD  167 (882)
Q Consensus       101 ---h~~~V~~l~fs~~~~~lasg~~---------dg~v~vwd~~-~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d  167 (882)
                         ....-......|+|.+-++-..         -..-.||-+. .+.....+..+-..-+.|+||||++ .++++=+..
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCC
Confidence               1245567888999987665333         1112455554 5666666666666778999999976 455555666


Q ss_pred             CcEEEEECCC--C-----eEEEEecCcccceEEEEEccCCCEEEEEeCCC-eEEEEecCCceeeeeecCc-ceeeEEEec
Q 002782          168 ATVRVWDLLA--K-----KCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY-EMVEAVCAI  238 (882)
Q Consensus       168 g~I~vwd~~~--~-----~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~  238 (882)
                      +.|..|++..  +     .....+..+.+..-.++...+|.+-+++..+| .|..|+.+ ++.+..+..+ ..+.+++|.
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            8888888752  1     11223334556777888888888776555554 89999988 7777766665 444444443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.49  E-value=0.36  Score=56.16  Aligned_cols=195  Identities=12%  Similarity=0.144  Sum_probs=117.4

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCceeeeecCCCcc--------EEEEEEc----------------CCCCEEEEEeCCCcEE
Q 002782           30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT--------ITALALS----------------PDDKLLFSSGHSREIR   85 (882)
Q Consensus        30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~--------I~~l~~s----------------pd~~~las~~~dg~i~   85 (882)
                      ++.+.++...+.|.-.|..||+.+-.+......        ...+++-                ..+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            454545545568999999999988666532210        1112221                1345788899999999


Q ss_pred             EEECCCCeeEEEeecCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCeEEEEe
Q 002782           86 VWDLSTLKCLRSWKGHDGPAI-------------GMACHP--SGGLLATAGA----------DRKVLVWDVDGGFCTHYF  140 (882)
Q Consensus        86 iwd~~~~~~~~~~~~h~~~V~-------------~l~fs~--~~~~lasg~~----------dg~v~vwd~~~~~~~~~~  140 (882)
                      -.|..+|+.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|+.+|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999877642 22210             111122  2345666642          688999999999988776


Q ss_pred             ecC---------CC--------cE-EEEEEecCCCccEEEEE------------------eCCCcEEEEECCCCeEEEEe
Q 002782          141 KGH---------KG--------VV-SSILFHPDTDKSLLFSG------------------SDDATVRVWDLLAKKCVATL  184 (882)
Q Consensus       141 ~~h---------~~--------~V-~~l~f~~~~~~~~l~sg------------------s~dg~I~vwd~~~~~~~~~l  184 (882)
                      ..-         .+        .+ ..+++.++...  ++.+                  ...+.|.-.|..+|+..-.+
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence            421         01        11 12233333222  2221                  12356777888899888776


Q ss_pred             cCcccceE---------EEEEcc-CCC---EEEEEeCCCeEEEEecCCceeeeeec
Q 002782          185 DKHFSRVT---------SMAITS-DGS---TLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       185 ~~h~~~v~---------~l~~s~-~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      +.....++         -+.+.. +|+   .++.++.+|.+.++|.++++.+...+
T Consensus       431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            54222111         122322 553   78999999999999999998776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.46  E-value=0.34  Score=55.22  Aligned_cols=291  Identities=16%  Similarity=0.136  Sum_probs=141.7

Q ss_pred             cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee----
Q 002782          314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS----  389 (882)
Q Consensus       314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~----  389 (882)
                      .++...+....+|.+...-+....+............|...-..++.+.  +...+.+|+.-|.=.+..+.+....    
T Consensus       267 ~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L--~ng~lFvGS~~gdSqLi~L~~e~d~gsy~  344 (1096)
T KOG1897|consen  267 LQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYL--DNGVLFVGSRFGDSQLIKLNTEPDVGSYV  344 (1096)
T ss_pred             CCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcc--cCceEEEeccCCceeeEEccccCCCCchh
Confidence            4455566666777776666554333333333444555566666677776  4558888888777676666543222    


Q ss_pred             eeeeC--CCcceEEeeeeeec-CCCEEEEEee---cCCeEEEEeCCCce-EEe--eeecccccEEEEE--EccCCCcEEE
Q 002782          390 YVLAG--HSEIVLCLDTCALS-SGKILIVTGS---KDNSVRLWDSESRC-CVG--VGTGHMGAVGAVA--FSKKLQNFLV  458 (882)
Q Consensus       390 ~~~~~--~~~~v~~~~~~~~~-~~~~~l~~~~---~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~v~--~s~~~~~~l~  458 (882)
                      ..++.  .-+++..+.+.-.. .+...+++++   +||++|+....-+- .+.  .+.+ -..++.+.  +.+.-.++++
T Consensus       345 ~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylv  423 (1096)
T KOG1897|consen  345 VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLV  423 (1096)
T ss_pred             hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEE
Confidence            11111  22355544321211 1222355554   68899987543221 111  1112 22333333  3332222333


Q ss_pred             EeeCCCeEEEEecCCCCCCCC--------C---------------------cccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782          459 SGSSDHTIKVWSFDGLSDDAE--------Q---------------------PMNLKAKAVVAAHGKDINSLAVAPNDSLV  509 (882)
Q Consensus       459 s~~~dg~i~~wd~~~~~~~~~--------~---------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  509 (882)
                      .+-.+.+ ++..+...-+...        +                     ..........-.....++....+.+...+
T Consensus       424 lsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqV  502 (1096)
T KOG1897|consen  424 LSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQV  502 (1096)
T ss_pred             EEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEE
Confidence            2222211 1111111000000        0                     00000000000112334555555566677


Q ss_pred             EEEcCCCcEEEEeCCCceeEEEE-ecccCceEEEEEcCCC------CEEEEeeCCCcEEEEe-cCCCceeeEe--ec--C
Q 002782          510 CTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVD------QVVITASGDKTIKIWS-ISDGSCLKTF--EG--H  577 (882)
Q Consensus       510 a~~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~------~~l~s~~~d~~i~iwd-~~~~~~~~~~--~~--h  577 (882)
                      +.++.++.+...++..+...... ......|.|+.++|-|      ++++.|..+..+.+-- +.+...+...  .+  -
T Consensus       503 vvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i  582 (1096)
T KOG1897|consen  503 VVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII  582 (1096)
T ss_pred             EEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc
Confidence            77777777776676655422111 1134679999999742      3788888776655544 3333332222  11  2


Q ss_pred             cCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782          578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVR  608 (882)
Q Consensus       578 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~  608 (882)
                      ..+|.-..|-.|..+|.++..||.+.-|-+.
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            2345555666678999999999988766544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.0074  Score=57.96  Aligned_cols=197  Identities=13%  Similarity=0.150  Sum_probs=118.7

Q ss_pred             cccccccccCCceEEccCCCEEEEEeCC------eEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeC-----
Q 002782           13 EPVLQQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGH-----   80 (882)
Q Consensus        13 ~~~~~~~y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~-----   80 (882)
                      ..+-..||+.|  .|||||.+|+...++      .|-|||...+ +.+..+..|.-.-..+.+.+||+.|+.+..     
T Consensus       109 s~~~RHfyGHG--vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth  186 (366)
T COG3490         109 SQEGRHFYGHG--VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH  186 (366)
T ss_pred             cccCceeeccc--ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence            34455677655  689999999988764      5889998755 355677778777788999999999988632     


Q ss_pred             -------------CCcEEEEECCCCeeEEE--ee--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEE
Q 002782           81 -------------SREIRVWDLSTLKCLRS--WK--GHDGPAIGMACHPSGGLLATAGADR-----KVLVWDVDGGFCTH  138 (882)
Q Consensus        81 -------------dg~i~iwd~~~~~~~~~--~~--~h~~~V~~l~fs~~~~~lasg~~dg-----~v~vwd~~~~~~~~  138 (882)
                                   ...+.+-|..+|.++..  +.  -+.-.|..++..+||+.++-+-..|     --.|=-...|+.+.
T Consensus       187 pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~  266 (366)
T COG3490         187 PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLE  266 (366)
T ss_pred             cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCc
Confidence                         13455555556655433  22  2456788999999988666543221     11122222333332


Q ss_pred             Eeec-------CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782          139 YFKG-------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV  211 (882)
Q Consensus       139 ~~~~-------h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~  211 (882)
                      .+.-       ...-|-+++.+-+ ...+.+|.-..+...+||..+|..+..-.-.  .+..+.  +...-++..+.+|.
T Consensus       267 ~~~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~  341 (366)
T COG3490         267 FLDLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGR  341 (366)
T ss_pred             ccCCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCce
Confidence            2221       1233556666544 3344555555667889999999877543211  122222  23334556666787


Q ss_pred             EEEEe
Q 002782          212 VNLWD  216 (882)
Q Consensus       212 i~vwd  216 (882)
                      +.++.
T Consensus       342 ~~~~s  346 (366)
T COG3490         342 IIFYS  346 (366)
T ss_pred             EEecc
Confidence            87764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.45  E-value=0.13  Score=52.81  Aligned_cols=147  Identities=20%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             ccCCCEEEEEeCCeEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe--------
Q 002782           28 SSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW--------   98 (882)
Q Consensus        28 s~dg~~la~~~~~~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------   98 (882)
                      ...++.|++|..+.+.+++.... ......+  ...|+.+...|+-+.|++-+. +.++++++........-        
T Consensus         4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence            45688899998888999999333 3333332  334999999998888777654 99999998765443311        


Q ss_pred             ------ecCCCCEEEEE--EcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782           99 ------KGHDGPAIGMA--CHPS-GGLLATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSG  164 (882)
Q Consensus        99 ------~~h~~~V~~l~--fs~~-~~~lasg~~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg  164 (882)
                            -.....+...+  -... +.+|+++ ....|.+|.+...     .....+. -...+..++|.+  +.  ++.|
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~--i~v~  154 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NK--ICVG  154 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CE--EEEE
Confidence                  11223454444  1223 3345544 4568999988653     2344444 457889999984  33  6666


Q ss_pred             eCCCcEEEEECCCCeEEEEe
Q 002782          165 SDDATVRVWDLLAKKCVATL  184 (882)
Q Consensus       165 s~dg~I~vwd~~~~~~~~~l  184 (882)
                      ..++ ..+.|+.++.....+
T Consensus       155 ~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             eCCc-eEEEecCCCCceEEe
Confidence            6555 888999877654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.44  E-value=0.089  Score=54.00  Aligned_cols=230  Identities=14%  Similarity=0.158  Sum_probs=127.2

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCC-CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  484 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  484 (882)
                      ....++. ++.|+.+| +.+++.. ........  +...|..+...++-+ .+++- .|+.+.++++.............
T Consensus         3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cccCCCE-EEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence            3455666 88888888 8888883 23333222  223499999998766 33333 35999999998664322110000


Q ss_pred             cc----hhhhhhcCCCeeEEE--EcCC-CcEEEEEcCCCcEEEEeCCCc-----eeEEEEecccCceEEEEEcCCCCEEE
Q 002782          485 KA----KAVVAAHGKDINSLA--VAPN-DSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI  552 (882)
Q Consensus       485 ~~----~~~~~~~~~~i~~~~--~s~~-~~~la~~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~  552 (882)
                      ..    ..........+...+  -.+. +..|+++. .+.|.+|.....     .....+. -...+.+++|.  ++.++
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence            00    001111223344444  1223 34555544 558888877553     3445554 45778899998  66777


Q ss_pred             EeeCCCcEEEEecCCCceeeEeecCc-----------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEE--EeccC
Q 002782          553 TASGDKTIKIWSISDGSCLKTFEGHT-----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKH  619 (882)
Q Consensus       553 s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~~h  619 (882)
                      .|.. ....+.|+.++.....+....           .....+.-.+++.+|++.  |..-.+-| ..|+..+  .+. -
T Consensus       153 v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~-W  227 (275)
T PF00780_consen  153 VGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQ-W  227 (275)
T ss_pred             EEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEE-c
Confidence            7765 448888998775543332111           112222223445666643  23223333 3555443  222 2


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782          620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  653 (882)
Q Consensus       620 ~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~  653 (882)
                      .....++++  ...+|+..+.++ |.||++.+++
T Consensus       228 ~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~  258 (275)
T PF00780_consen  228 SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGE  258 (275)
T ss_pred             CCchhEEEE--ECCEEEEECCCE-EEEEECcCCc
Confidence            334555655  456888777655 9999999874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.13  Score=56.44  Aligned_cols=239  Identities=12%  Similarity=0.105  Sum_probs=129.1

Q ss_pred             eecCCCEEEEEeecCC----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC----------CeEEEEec
Q 002782          406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF  471 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d----------g~i~~wd~  471 (882)
                      ++|+++.++++-+..|    .++++|+.+++.+...-... ....+.|.+++..++.+...+          ..|..|.+
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~  209 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL  209 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence            7899998666655555    49999999997765421111 122399999988666665333          23677777


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCC--eeEEEEcCCCcEEEEEcCC----CcEEEEeCCCc----eeEEEEecccCceEE
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS  541 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~s~d----g~i~iwd~~~~----~~~~~~~~h~~~v~~  541 (882)
                      .+....        ...++......  ...+..++|+++++..+..    ..+.+.++..+    .....+..+...+..
T Consensus       210 gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  210 GTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             TS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             CCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            654211        01122222222  5678899999998764432    34788888764    233444434444443


Q ss_pred             EEEcCCCCEEEEee---CCCcEEEEecCCCce---eeEeecCcCCEEEEEEEeCCCEEEEee-cCC--eEEEEEcCCCee
Q 002782          542 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC  612 (882)
Q Consensus       542 l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg--~i~iwd~~~~~~  612 (882)
                      ..-...+.+++...   .++.|.-.++.+...   ...+..|...+.-..+...+.+|+... .++  .|+++++..+..
T Consensus       282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            33333444444332   345677777776653   235555666444445555566665544 444  689999984444


Q ss_pred             EEEecc-CCCceEEEEEcCCCCEEE-EEeC---CCCEEEEECCCHH
Q 002782          613 IATYDK-HEDKIWALAVGKKTEMFA-TGGS---DALVNLWHDSTAA  653 (882)
Q Consensus       613 ~~~~~~-h~~~v~~l~~s~~~~~l~-s~~~---dg~i~iw~~~~~~  653 (882)
                      ...+.. -.+.|..+...++++.+. +.++   -+.+..||+.+++
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            444433 334466665555555333 2221   2456677776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.019  Score=64.66  Aligned_cols=149  Identities=11%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             CCccEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC-------
Q 002782           59 GSDTITALALSPDDKLLFSSG------HSR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD-------  123 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~------~dg--~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d-------  123 (882)
                      ....+.+.++||||+.+|..-      .|.  .|.+++. .+.. +.+.. ....+.-.|+|||+.|++.+..       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence            334678999999999987654      243  4555554 2222 33322 1237888999999988887532       


Q ss_pred             -----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE---EECCCCeE-E---EEecC-cccc
Q 002782          124 -----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV---WDLLAKKC-V---ATLDK-HFSR  190 (882)
Q Consensus       124 -----g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v---wd~~~~~~-~---~~l~~-h~~~  190 (882)
                           +.+.+.+++.+....   ...+.|..+.|+|||.+..+++   +|.|.+   -....|.. +   ..+.. -...
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT  498 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence                 233333444433222   2356799999999998744433   467776   44445541 1   11222 2234


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          191 VTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       191 v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                      +.++.|..++.++ .+..++.-.+|.+
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEE
Confidence            6889999998854 5555444445544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00091  Score=71.09  Aligned_cols=78  Identities=19%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782           61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHY  139 (882)
Q Consensus        61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~-~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~  139 (882)
                      ..|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|..+++ +++|.|||++||+|-.||+|++-|+++|..++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467889999999999999999999999987 778888887888887 999999999999999999999999999887665

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.35  E-value=7.8e-05  Score=78.76  Aligned_cols=203  Identities=16%  Similarity=0.281  Sum_probs=131.1

Q ss_pred             cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEee----CCCeEEEEe
Q 002782          397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWS  470 (882)
Q Consensus       397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~----~dg~i~~wd  470 (882)
                      ..+.|++.....+ +.++++|..+|.|-+-......-  -....++..+.++++|++-..+.|++|-    .|..+.+||
T Consensus        57 qy~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4455665322223 34588899999999887664322  2345678889999999987666777773    467899999


Q ss_pred             cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcC-CC
Q 002782          471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-VD  548 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~  548 (882)
                      +...-..+........     ......++++|-.+.+++.+|...+.+.++|++.. .....+  ....+..+..+| .+
T Consensus       136 i~s~ltvPke~~~fs~-----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSS-----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP  208 (783)
T ss_pred             cccccCCCcccccccc-----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence            9876221111111111     13345568888889999999999999999998732 222222  233466677888 66


Q ss_pred             CEEEEeeCCCcEEEEec-CCC-ceeeEeecCcC----CEEEEEEEeCCC-EEEEeecC-CeEEEEEcC
Q 002782          549 QVVITASGDKTIKIWSI-SDG-SCLKTFEGHTS----SVLRASFLTRGA-QIVSCGAD-GLVKLWTVR  608 (882)
Q Consensus       549 ~~l~s~~~d~~i~iwd~-~~~-~~~~~~~~h~~----~v~~~~~s~~g~-~l~s~~~d-g~i~iwd~~  608 (882)
                      .++++-. ||.|.+||. ..- .++..+....+    .+..++|+|... .+++...| ++|+.+|+.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7777665 899999993 222 23333332222    388899998543 55666654 689999875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0011  Score=70.54  Aligned_cols=93  Identities=16%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceE-EEEEcCCCCEEEEeeCCCcEEEEecCCCceee
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLK  572 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  572 (882)
                      ...+.-+.|+|.-.++|++..+|.+.+..+. ...+.++..|..+++ +++|.|||++||.|-.||+|++-|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4467789999999999999999999999988 778888887888888 99999999999999999999999999988776


Q ss_pred             Eee-cCcCCEEEEEEE
Q 002782          573 TFE-GHTSSVLRASFL  587 (882)
Q Consensus       573 ~~~-~h~~~v~~~~~s  587 (882)
                      .+. .....|.++.|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            632 244566667775

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.0009  Score=44.05  Aligned_cols=39  Identities=38%  Similarity=0.728  Sum_probs=35.2

Q ss_pred             CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD  130 (882)
Q Consensus        92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd  130 (882)
                      ++++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456777888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.17  E-value=0.001  Score=43.81  Aligned_cols=39  Identities=33%  Similarity=0.669  Sum_probs=34.6

Q ss_pred             CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782           50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD   88 (882)
Q Consensus        50 ~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd   88 (882)
                      ++....+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345677778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.17  E-value=0.0087  Score=68.15  Aligned_cols=145  Identities=11%  Similarity=0.089  Sum_probs=100.0

Q ss_pred             EEEeecCCeEEEEeCCCceEEeeeeccccc-EEEEEEccC----CCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782          414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  488 (882)
Q Consensus       414 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~s~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  488 (882)
                      +........++-.|++.|+.+.....|... |..++-...    ...-.+.|-.+..+..||.+......   .  ....
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v--~~~~  571 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---V--DSQS  571 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---e--eccc
Confidence            333445678999999999999998887654 655543211    11235677788899999987532100   0  0011


Q ss_pred             hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782          489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       489 ~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                      .........+|++-+.+| +||+|+.+|.|++||-........+.+-..+|..|+.+.||++|++.+. ..+.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            112345567888888777 8899999999999995443334456677899999999999999887765 66777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.16  E-value=0.032  Score=46.18  Aligned_cols=102  Identities=24%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 002782           63 ITALALSP---DD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH  138 (882)
Q Consensus        63 I~~l~~sp---d~-~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~  138 (882)
                      |++|++..   || +.|++|+.|..|++|+  ..+.+..+..+ ..|++++-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            67777765   33 5799999999999997  44677777754 66777776665 56888889999999975  33344


Q ss_pred             EeecCCCcEEEEEEec-CC-CccEEEEEeCCCcEE
Q 002782          139 YFKGHKGVVSSILFHP-DT-DKSLLFSGSDDATVR  171 (882)
Q Consensus       139 ~~~~h~~~V~~l~f~~-~~-~~~~l~sgs~dg~I~  171 (882)
                      +.+.. ..+.++++.. ++ ...-|++|-.+|.|-
T Consensus        76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            55533 3356665543 32 123488888888764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.14  E-value=0.19  Score=49.18  Aligned_cols=173  Identities=17%  Similarity=0.168  Sum_probs=109.8

Q ss_pred             eEEccCCCEEEEEeC-C--eEEEEEcCCCceeeeecCC----CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002782           25 LVVSSDGSFIACACG-E--SINIVDLSNASIKSTIEGG----SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS   97 (882)
Q Consensus        25 va~s~dg~~la~~~~-~--~I~i~d~~~~~~~~~l~~~----~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~   97 (882)
                      +.|..||.++-+.+. +  .|+.+|+.+|+......-.    .+.|+.+    +++...-.-.++...+||..+.+.+.+
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccccceEEEE
Confidence            667677765554443 2  6999999999977554432    2334433    233444556789999999999999998


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC--C---CcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782           98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRV  172 (882)
Q Consensus        98 ~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h--~---~~V~~l~f~~~~~~~~l~sgs~dg~I~v  172 (882)
                      +.-. +.=..++  .|++.|+.......+.++|..+-+....+.-.  .   ..++.+.|..   ..+.|=.-....|..
T Consensus       126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~---G~IyANVW~td~I~~  199 (264)
T PF05096_consen  126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN---GKIYANVWQTDRIVR  199 (264)
T ss_dssp             EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET---TEEEEEETTSSEEEE
T ss_pred             EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc---CEEEEEeCCCCeEEE
Confidence            8643 4455666  45666777666788999999887776665532  2   2355666662   234555555667888


Q ss_pred             EECCCCeEEEEecC------------c---ccceEEEEEccCCCEEEEEe
Q 002782          173 WDLLAKKCVATLDK------------H---FSRVTSMAITSDGSTLISAG  207 (882)
Q Consensus       173 wd~~~~~~~~~l~~------------h---~~~v~~l~~s~~~~~l~s~~  207 (882)
                      .|..+|+.+..+.-            +   .+-...+++.|....|+..|
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            89999998876521            1   24578999998887776665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0062  Score=69.07  Aligned_cols=109  Identities=18%  Similarity=0.293  Sum_probs=80.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 002782           65 ALALSPDDKLLFSSGHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH  143 (882)
Q Consensus        65 ~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h  143 (882)
                      .++..-.+..+|.|++.|.+-..|+... .+...-..-.++|++++|+.+|++++.|-.+|.|.+||...++.++.+..|
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            3333334667899999999999988653 222222224689999999999999999999999999999999999999888


Q ss_pred             CCcEEEEEEec-CCCccEEEEEeCCCcEEEEEC
Q 002782          144 KGVVSSILFHP-DTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus       144 ~~~V~~l~f~~-~~~~~~l~sgs~dg~I~vwd~  175 (882)
                      ..+.+.+-++- +++...++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            88777766643 122234777777775  6765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.08  E-value=0.13  Score=51.69  Aligned_cols=147  Identities=18%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             CCceEEccCCCEEEEEe--CC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeeEE
Q 002782           22 GGPLVVSSDGSFIACAC--GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD-LSTLKCLR   96 (882)
Q Consensus        22 g~~va~s~dg~~la~~~--~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd-~~~~~~~~   96 (882)
                      ....++|+||+.+|+..  ++  .+.++..... ....+.+  ..++.-.|++++...++...+...+++. ..++....
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            34799999999988877  44  4555554322 2222333  3788999999988777776666777774 33433221


Q ss_pred             -Eeec--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--eE----EEEeecCCCcEEEEEEecCCCccEE
Q 002782           97 -SWKG--HDGPAIGMACHPSGGLLATAG---ADRKVLVWDVD---GG--FC----THYFKGHKGVVSSILFHPDTDKSLL  161 (882)
Q Consensus        97 -~~~~--h~~~V~~l~fs~~~~~lasg~---~dg~v~vwd~~---~~--~~----~~~~~~h~~~V~~l~f~~~~~~~~l  161 (882)
                       ....  -.+.|+.+.+||||.++|...   .++.|.|=-+.   .+  ..    ..........+..+.|.+++. .++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V  181 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVV  181 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEE
Confidence             1211  122899999999999988766   34777776553   23  11    111123356789999999864 333


Q ss_pred             EEEeCCCcEEE
Q 002782          162 FSGSDDATVRV  172 (882)
Q Consensus       162 ~sgs~dg~I~v  172 (882)
                      ++...++.+..
T Consensus       182 ~~~~~~~~~~~  192 (253)
T PF10647_consen  182 LGRSAGGPVVR  192 (253)
T ss_pred             EeCCCCCceeE
Confidence            33344443443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.019  Score=60.16  Aligned_cols=147  Identities=12%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             cCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc------EEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782          408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQP  481 (882)
Q Consensus       408 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~------~l~s~~~dg~i~~wd~~~~~~~~~~~  481 (882)
                      .+.+.++..+.....++-.|++.|+.+.....+.. |+-+.+.|+...      --+.|-.|..|.-||.+-....    
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----  417 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----  417 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----
Confidence            44555677777778889999999999999887776 777777776531      1345667888888997633210    


Q ss_pred             ccccchhhhhh----cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782          482 MNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  557 (882)
Q Consensus       482 ~~~~~~~~~~~----~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  557 (882)
                          .......    ......|.+-..+| ++|+||.+|.|++||--.......+.+-..+|..|..+.+|++|+..+. 
T Consensus       418 ----kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-  491 (644)
T KOG2395|consen  418 ----KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-  491 (644)
T ss_pred             ----eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence                1111111    23345677766666 8899999999999997444445567788899999999999999887654 


Q ss_pred             CcEEEEec
Q 002782          558 KTIKIWSI  565 (882)
Q Consensus       558 ~~i~iwd~  565 (882)
                      .++.+-++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            56666664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0082  Score=68.15  Aligned_cols=105  Identities=18%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             eEEccCCCEEEEEeCC-eEEEEEcCCCc-eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782           25 LVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD  102 (882)
Q Consensus        25 va~s~dg~~la~~~~~-~I~i~d~~~~~-~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~  102 (882)
                      ++.--.+.+++++... .|...|..+.- ....=+.-..+|++++|+.||++++.|-.+|.|.+||+..++.++.+..|.
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence            3333344556655544 67777765431 111112235689999999999999999999999999999999999998877


Q ss_pred             CCEEEEEE---cCCCCEEEEEeCCCcEEEEEC
Q 002782          103 GPAIGMAC---HPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus       103 ~~V~~l~f---s~~~~~lasg~~dg~v~vwd~  131 (882)
                      .|.+.+-+   ..++..+.++...|.  +|.+
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            77665543   445556777766665  6665

>PRK10115 protease 2; Provisional

Probab=97.01  E-value=1.1  Score=52.22  Aligned_cols=194  Identities=11%  Similarity=0.086  Sum_probs=105.8

Q ss_pred             ccCCceEEccCCCEEEEEeCC------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 002782           20 YGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------REIRVW   87 (882)
Q Consensus        20 y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------g~i~iw   87 (882)
                      |.-+.+.+||||++|+++.+.      .|.+.|+.+|+.+...-.+..  ..++|++|++.|+....+      ..|..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            333467899999999998743      499999999874322211221  459999999877655332      368888


Q ss_pred             ECCCC--eeEEEeecCCCCEE-EEEEcCCCCEEEEEe---CCCcEEEEECC--CCeEEEEeecCCCcEEEEEEecCCCcc
Q 002782           88 DLSTL--KCLRSWKGHDGPAI-GMACHPSGGLLATAG---ADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKS  159 (882)
Q Consensus        88 d~~~~--~~~~~~~~h~~~V~-~l~fs~~~~~lasg~---~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~f~~~~~~~  159 (882)
                      ++.++  +-...+........ .+..+.++++++..+   .++.+.+++..  ++.....+..-.+....+. +. ++..
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l  282 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRF  282 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEE
Confidence            99888  44444444333333 344455888776544   34678899852  3332222221222222222 22 2333


Q ss_pred             EEEEEe--CCCcEEEEECCCCeEEEEecCc-c-cceEEEEEccCCCEEEEEeCCCeEEEEecC
Q 002782          160 LLFSGS--DDATVRVWDLLAKKCVATLDKH-F-SRVTSMAITSDGSTLISAGRDKVVNLWDLR  218 (882)
Q Consensus       160 ~l~sgs--~dg~I~vwd~~~~~~~~~l~~h-~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~  218 (882)
                      ++.+-.  ....|...++........+..+ . ..+..+.++ .+..+++...+|.-+++-+.
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            333322  2223444455421222333334 2 367778777 33455555566665555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.97  E-value=0.25  Score=46.47  Aligned_cols=136  Identities=13%  Similarity=0.035  Sum_probs=83.9

Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC--------ceEEEEEcCCCCEE-EEeeCCCcEEEEe
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--------GIWSVEFSPVDQVV-ITASGDKTIKIWS  564 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--------~v~~l~~s~~~~~l-~s~~~d~~i~iwd  564 (882)
                      ....+.-..+|+|++++-.-.|-. -.+....+.+..-+.+|.-        --..++|+.+.+.+ ++-+.+-+|.-||
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345667788999999542222211 1222222333333333332        22467888776654 4456677887787


Q ss_pred             --cCCCce-----eeEeec----CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782          565 --ISDGSC-----LKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK  630 (882)
Q Consensus       565 --~~~~~~-----~~~~~~----h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~  630 (882)
                        ..+|..     +..++.    ..-..-.++...+|...+++-..|+|...|..+|+.+.++.-+...|++++|--
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence              555533     222221    111122345566788888888889999999999999999998899999999953

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.22  Score=48.34  Aligned_cols=98  Identities=18%  Similarity=0.179  Sum_probs=65.0

Q ss_pred             ceEEccCCCE-EEEEe--CCeEEEEEcCCCceeeeecCCCc--cEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC-
Q 002782           24 PLVVSSDGSF-IACAC--GESINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFSSGH-----SREIRVWDLSTL-   92 (882)
Q Consensus        24 ~va~s~dg~~-la~~~--~~~I~i~d~~~~~~~~~l~~~~~--~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~-   92 (882)
                      -++++|-... ++++-  +.--.++|..+++...++...++  ---.=.|||||.+|...-.     .|.|=|||...+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4666665543 22222  22467888887765554432111  1112369999999987633     478999998754 


Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEe
Q 002782           93 KCLRSWKGHDGPAIGMACHPSGGLLATAG  121 (882)
Q Consensus        93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~  121 (882)
                      ..+..|..|.-.-..+.+.+||+.|+.+.
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeC
Confidence            56677888888888999999999988763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.018  Score=60.34  Aligned_cols=143  Identities=18%  Similarity=0.249  Sum_probs=101.3

Q ss_pred             CCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE--E-----EEEeCCCcEEEEECCC-Ce-EEEE
Q 002782           70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL--L-----ATAGADRKVLVWDVDG-GF-CTHY  139 (882)
Q Consensus        70 pd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~--l-----asg~~dg~v~vwd~~~-~~-~~~~  139 (882)
                      .+.++|. ++.....|+--|++.|+.+..|+-|.. |..+.+.|+.+.  |     +.|-.|..|+-||..- +. .+..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3445544 455567789999999999999998876 888888887652  2     3455788899999852 22 2222


Q ss_pred             eecC----CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782          140 FKGH----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  215 (882)
Q Consensus       140 ~~~h----~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw  215 (882)
                      ..+|    .....|.+-..+|   +++.||.+|.|++||--.......+++-..+|..+..+.+|++++..+ +..+.+.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG---~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG---YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCc---eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence            2333    2345566555543   499999999999999743344455678888999999999999988777 4556665


Q ss_pred             ec
Q 002782          216 DL  217 (882)
Q Consensus       216 d~  217 (882)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            54

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.84  E-value=0.051  Score=45.02  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=65.4

Q ss_pred             EEEEEEc---cCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782          444 VGAVAFS---KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  520 (882)
Q Consensus       444 v~~v~~s---~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i  520 (882)
                      |+++++.   .+|.+-|++|+.|..|++|+-...             .........|++++-... ..++.+..+|+|-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-------------~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-------------VAEITETDKVTSLCSLGG-GRFAYALANGTVGV   67 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-------------EEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence            4555554   466678999999999999985421             111223456777777666 56888999999999


Q ss_pred             EeCCCceeEEEEecccCceEEEEEcCC---C-CEEEEeeCCCcEE
Q 002782          521 WRLPDLVSVVTFRGHKRGIWSVEFSPV---D-QVVITASGDKTIK  561 (882)
Q Consensus       521 wd~~~~~~~~~~~~h~~~v~~l~~s~~---~-~~l~s~~~d~~i~  561 (882)
                      |+-.  ..+-..+. +..+.++++..-   | .-|++|-.+|.|-
T Consensus        68 Y~~~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   68 YDRS--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EeCc--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9752  23334443 333666655432   2 2688888888764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.80  E-value=0.0018  Score=60.28  Aligned_cols=141  Identities=15%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             EEEeCCCcEEEEECCCCeeEE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEe
Q 002782           76 FSSGHSREIRVWDLSTLKCLR-SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFH  153 (882)
Q Consensus        76 as~~~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~  153 (882)
                      ..-+.+|.|+-+++...+.-. .-.-|...   ...-.-+.-++.|+.+|.|.+|++... ...-.+..-...|.++--.
T Consensus        34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            334566777777664432111 11112222   112223456888999999999998621 1111111112233333222


Q ss_pred             cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcc-cceEEEEEccCCCEEEEE--eCCCeEEEEecCCc
Q 002782          154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISA--GRDKVVNLWDLRDY  220 (882)
Q Consensus       154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~v~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~  220 (882)
                      -+ ...+..+++.||.|+.|+..-++.+.....|. .++..+..+..++++.++  +.|..++.|++...
T Consensus       111 ~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  111 GR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cc-ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            22 33468899999999999999999888887777 466666666666677777  77777777777643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.79  E-value=0.33  Score=50.78  Aligned_cols=191  Identities=15%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             CCCEEEEEeCC--eEEEEEcCCC----ceeeeecC---CC----ccEEEEEEcCCCCEEEEE--eC----CCcEEEEECC
Q 002782           30 DGSFIACACGE--SINIVDLSNA----SIKSTIEG---GS----DTITALALSPDDKLLFSS--GH----SREIRVWDLS   90 (882)
Q Consensus        30 dg~~la~~~~~--~I~i~d~~~~----~~~~~l~~---~~----~~I~~l~~spd~~~las~--~~----dg~i~iwd~~   90 (882)
                      +.++|+.++-.  .|.|+|+.+.    ++.+.++.   +.    ..-..+-.-|+|+.++++  ..    -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            56788888854  7999998743    45555553   11    112233344799888875  22    3579999999


Q ss_pred             CCeeEEEeecCCC---CEEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeecCC--C
Q 002782           91 TLKCLRSWKGHDG---PAIGMACHPSGGLLATAGA--------------------DRKVLVWDVDGGFCTHYFKGHK--G  145 (882)
Q Consensus        91 ~~~~~~~~~~h~~---~V~~l~fs~~~~~lasg~~--------------------dg~v~vwd~~~~~~~~~~~~h~--~  145 (882)
                      +.+....+.....   --..+.+.|..+.++|...                    ..++.+||+.+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            9998888875433   3356778898888888642                    4579999999999999887332  3


Q ss_pred             cEEEEEEecCCCccEEEEE-eCCCcEEEEEC-CCCe----EEEEecCc-----------------ccceEEEEEccCCCE
Q 002782          146 VVSSILFHPDTDKSLLFSG-SDDATVRVWDL-LAKK----CVATLDKH-----------------FSRVTSMAITSDGST  202 (882)
Q Consensus       146 ~V~~l~f~~~~~~~~l~sg-s~dg~I~vwd~-~~~~----~~~~l~~h-----------------~~~v~~l~~s~~~~~  202 (882)
                      ....+.|..+.....-++| .-.++|..|-- ..++    .+..+...                 ..-|+.+.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            4678888766544333333 34445555432 3332    12222111                 245799999999999


Q ss_pred             EEEEe-CCCeEEEEecCCc
Q 002782          203 LISAG-RDKVVNLWDLRDY  220 (882)
Q Consensus       203 l~s~~-~dg~i~vwd~~~~  220 (882)
                      |+.++ ..|.|+.||+.+.
T Consensus       326 LYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEETTTTEEEEEE-SST
T ss_pred             EEEEcccCCcEEEEecCCC
Confidence            98776 6899999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.77  E-value=1.7  Score=50.72  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc--------EEEEEEecC--------------CCccEEEEEeCCCcEE
Q 002782          114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV--------VSSILFHPD--------------TDKSLLFSGSDDATVR  171 (882)
Q Consensus       114 ~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~--------V~~l~f~~~--------------~~~~~l~sgs~dg~I~  171 (882)
                      +..|..++.++.|.-.|..+|+.+.++......        ...+++...              .....++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557777888899999999999988877532211        112333211              1123588889999999


Q ss_pred             EEECCCCeEEEEecCcccceE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEecCCceeeeee
Q 002782          172 VWDLLAKKCVATLDKHFSRVT-------------SMAITS--DGSTLISAGR----------DKVVNLWDLRDYSCKLTV  226 (882)
Q Consensus       172 vwd~~~~~~~~~l~~h~~~v~-------------~l~~s~--~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~  226 (882)
                      -.|..+|+....+... +.|.             .+.-.|  .+..++.++.          +|.|+-+|..+++.....
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999988765321 1110             011111  1335555542          577888888888776655


Q ss_pred             cC
Q 002782          227 PT  228 (882)
Q Consensus       227 ~~  228 (882)
                      ..
T Consensus       353 ~~  354 (764)
T TIGR03074       353 DP  354 (764)
T ss_pred             ec
Confidence            43

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.76  E-value=0.51  Score=48.07  Aligned_cols=152  Identities=15%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeE
Q 002782           58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFC  136 (882)
Q Consensus        58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~  136 (882)
                      +-...+..+..++||++++++.....+.-||--...-...-+.....|.+|.|+|++.+.+.+ ..|.|+.=+. .....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            345678899999999999998776666788754322222223346899999999998876654 7788888772 22221


Q ss_pred             EEE----eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCC
Q 002782          137 THY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRD  209 (882)
Q Consensus       137 ~~~----~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~d  209 (882)
                      -..    +..-.-.+..++|.++..   +.+++..|.+ +.....|+.-..-+   .-.+.+..+.|.++. .-+..+.+
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~---~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~  295 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNE---IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQD  295 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS----EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-ST
T ss_pred             cccccCCcccCceeeEEEEecCCCC---EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCC
Confidence            111    111223478999998744   4455555644 34445555443332   334578888897654 45556678


Q ss_pred             CeEEEE
Q 002782          210 KVVNLW  215 (882)
Q Consensus       210 g~i~vw  215 (882)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            877655

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.72  E-value=0.003  Score=58.82  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             CCcEEEEEcCCCcEEEEeCCCceeEEE-EecccCce-EEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCE
Q 002782          505 NDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGI-WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSV  581 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~~~~~~-~~~h~~~v-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v  581 (882)
                      -+.-+++|+.+|.|++|.......... +..-...| ..+.-..++.+..+++.||.|+.|++..++.+.....|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            456788999999999998762211111 11111222 223333456688999999999999999888877776676 444


Q ss_pred             EEEEEEeCCCEEEEe--ecCCeEEEEEcC
Q 002782          582 LRASFLTRGAQIVSC--GADGLVKLWTVR  608 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~--~~dg~i~iwd~~  608 (882)
                      .....+..+..++++  |.|..++.|++.
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchh
Confidence            444444444555555  555555555553

>PHA02713 hypothetical protein; Provisional

Probab=96.72  E-value=0.15  Score=57.85  Aligned_cols=225  Identities=14%  Similarity=0.124  Sum_probs=107.2

Q ss_pred             cEEEEeCCCceeeeeeeCCCcce-EEeeeeeecCCCEEEEEeecC------CeEEEEeCCCceEEeeeecccccEEEEEE
Q 002782          377 QVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAVGAVAF  449 (882)
Q Consensus       377 ~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~  449 (882)
                      .+..||..+......-.-..... .+.   ...++.. .+.|+.+      ..+..||..+........-....-...+.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~---a~l~~~I-YviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYAS---AIVDNEI-IIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEE---EEECCEE-EEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence            46677777665332211111111 112   2234444 6666643      34777888776543222111111111111


Q ss_pred             ccCCCcEEEEeeCCC-----eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC--------
Q 002782          450 SKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--------  516 (882)
Q Consensus       450 s~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg--------  516 (882)
                      .-++. +.+.||.++     ++..||..+..        +...............+  .-+|++.+.|+.++        
T Consensus       349 ~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~  417 (557)
T PHA02713        349 VIDDT-IYAIGGQNGTNVERTIECYTMGDDK--------WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVH  417 (557)
T ss_pred             EECCE-EEEECCcCCCCCCceEEEEECCCCe--------EEECCCCCcccccccEE--EECCEEEEEeCCCccccccccc
Confidence            22333 667777653     47778866431        11111111111111112  23688888887653        


Q ss_pred             ---------------cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCC------CcEEEEecCC-C--ce
Q 002782          517 ---------------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--SC  570 (882)
Q Consensus       517 ---------------~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~~i~iwd~~~-~--~~  570 (882)
                                     .+..||..+.+-.  ..+....... ++ ..-++++.+.|+.+      ..+..||..+ .  +.
T Consensus       418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~  495 (557)
T PHA02713        418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL  495 (557)
T ss_pred             ccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence                           4667777665321  1111111111 12 22347777777654      2467888876 3  33


Q ss_pred             eeEeecCcCCEEEEEEEeCCCEEEEeecCC--eEEEEEcCCCeeEEEeccCC
Q 002782          571 LKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLWTVRTGECIATYDKHE  620 (882)
Q Consensus       571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~  620 (882)
                      +..+.........+  .-+|+..++||.||  .+..||+.+++....-..|.
T Consensus       496 ~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        496 ITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             ccccCcccccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            34443222222112  23678888999888  77888887776554444444

>PHA02713 hypothetical protein; Provisional

Probab=96.72  E-value=0.12  Score=58.69  Aligned_cols=144  Identities=11%  Similarity=0.092  Sum_probs=77.3

Q ss_pred             cCCCcEEEEEcCCC-----cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCCC-----------------
Q 002782          503 APNDSLVCTGSQDR-----TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDK-----------------  558 (882)
Q Consensus       503 s~~~~~la~~s~dg-----~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d~-----------------  558 (882)
                      .-+|++.+.|+.++     ++..||..+.+-.  ..+.........+.  -+|.+.+.|+.++                 
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence            34778888888764     4788888765321  11111111112222  2577777777553                 


Q ss_pred             ------cEEEEecCCCce--eeEeecCcCCEEEEEEEeCCCEEEEeecCC------eEEEEEcCC-Ce--eEEEeccCCC
Q 002782          559 ------TIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-GE--CIATYDKHED  621 (882)
Q Consensus       559 ------~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg------~i~iwd~~~-~~--~~~~~~~h~~  621 (882)
                            .+..||..+.+-  +..+.  ..........-+|+..+.||.++      .+..||..+ .+  .+..+..+..
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  467788765532  22221  11111122234566666676542      467899886 44  3344443333


Q ss_pred             ceEEEEEcCCCCEEEEEeCCC--CEEEEECCCH
Q 002782          622 KIWALAVGKKTEMFATGGSDA--LVNLWHDSTA  652 (882)
Q Consensus       622 ~v~~l~~s~~~~~l~s~~~dg--~i~iw~~~~~  652 (882)
                      ......+  +|...++||.||  .+..||..+.
T Consensus       505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             cceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence            3333333  888889999888  5556665554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.38  Score=47.25  Aligned_cols=176  Identities=14%  Similarity=0.160  Sum_probs=113.0

Q ss_pred             cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc--eeeEEEecCCCCCcccccccchhhhhhccccc
Q 002782          185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS  262 (882)
Q Consensus       185 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (882)
                      .+-...+.++.|+|+.+.|++......-.+|=...++.+.++|...  ..+.+..+.++                     
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n---------------------  140 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN---------------------  140 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC---------------------
Confidence            4455669999999999999999988888888888888888887653  34444444443                     


Q ss_pred             cceEEEEEcCCCeEEEEECCCc-eeeeecCCceeeeeccC-CcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782          263 LEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMD-DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  340 (882)
Q Consensus       263 ~~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  340 (882)
                        .+.++--.++.+.++.++.. ........  ....... ....++-.+++.|.+..+++.-...-+.+|.....+...
T Consensus       141 --~fvi~dER~~~l~~~~vd~~t~~~~~~~~--~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         141 --QFVIVDERDRALYLFTVDADTTVISAKVQ--KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             --EEEEEehhcceEEEEEEcCCccEEeccce--EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence              24444455666776666555 12111111  1222222 226789999999999999999999999888877544211


Q ss_pred             ---ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC
Q 002782          341 ---MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS  385 (882)
Q Consensus       341 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~  385 (882)
                         ..........-.-..+.++.|.+..+.+++.+..++.+.-.|...
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence               011111111112345667777777777777777777777666543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.48  E-value=0.73  Score=46.21  Aligned_cols=147  Identities=14%  Similarity=0.088  Sum_probs=89.5

Q ss_pred             cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782          443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  522 (882)
Q Consensus       443 ~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd  522 (882)
                      .+.+.++++++..+.+....++.-.+|-......         .....  ....+....|++++...+....+....++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence            6888999999986555553344444444332211         11111  233678889999988888877777777774


Q ss_pred             -CCCceeE-EEEecc-c-CceEEEEEcCCCCEEEEee---CCCcEEEEecC---CC------ceeeEeecCcCCEEEEEE
Q 002782          523 -LPDLVSV-VTFRGH-K-RGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF  586 (882)
Q Consensus       523 -~~~~~~~-~~~~~h-~-~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~---~~------~~~~~~~~h~~~v~~~~~  586 (882)
                       ..++... ..+... . ..|.++.+||||..++...   .++.|.+--+.   .+      ..+.........++.+.|
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence             2333221 112211 1 2899999999999887765   35777776543   23      111222233468899999


Q ss_pred             EeCCCEEEEeecCC
Q 002782          587 LTRGAQIVSCGADG  600 (882)
Q Consensus       587 s~~g~~l~s~~~dg  600 (882)
                      .+++.+++.+...+
T Consensus       174 ~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  174 SDDSTLVVLGRSAG  187 (253)
T ss_pred             cCCCEEEEEeCCCC
Confidence            99998877766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.36  E-value=1.9  Score=46.21  Aligned_cols=144  Identities=9%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe-----EEEEeecCCCcEEEEEEe---cCCCccEEEEEeCCCcEEEEECCC--Ce---
Q 002782          113 SGGLLATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFH---PDTDKSLLFSGSDDATVRVWDLLA--KK---  179 (882)
Q Consensus       113 ~~~~lasg~~dg~v~vwd~~~~~-----~~~~~~~h~~~V~~l~f~---~~~~~~~l~sgs~dg~I~vwd~~~--~~---  179 (882)
                      +...+++|+..|.++|++...+.     .+.. ..-..+|..+..-   +..+...||. -.-..+.||.+..  |.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34589999999999999995432     1111 1245677777653   3323233443 5556788887721  11   


Q ss_pred             ----EEEEecCccc--ceEEEEEcc----C-CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccc
Q 002782          180 ----CVATLDKHFS--RVTSMAITS----D-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL  248 (882)
Q Consensus       180 ----~~~~l~~h~~--~v~~l~~s~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (882)
                          .+..+..|.-  ....+++-|    . ..++..-+.||.+.+++-+.......++..-....+.+.+...      
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tD------  187 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTD------  187 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCC------
Confidence                2222223322  223333322    2 3567788999999999988766555555544444444444333      


Q ss_pred             ccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782          249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA  281 (882)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~  281 (882)
                                       .|++++....+..|..
T Consensus       188 -----------------sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  188 -----------------SFVTASSSWTLECYKY  203 (418)
T ss_pred             -----------------EEEEecCceeEEEecH
Confidence                             5666666666666654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.34  E-value=0.19  Score=47.13  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=83.4

Q ss_pred             EEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--------ccEEEEEEcCCCCEEEEE-eCCCcEEEEE--CCCCe-
Q 002782           26 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGS--------DTITALALSPDDKLLFSS-GHSREIRVWD--LSTLK-   93 (882)
Q Consensus        26 a~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~--------~~I~~l~~spd~~~las~-~~dg~i~iwd--~~~~~-   93 (882)
                      -++|+|++.+-.-.+.--++....|++..-+.+|.        .--..++|+.|.+.+... +.+-.|.-||  .++|. 
T Consensus       115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~  194 (310)
T KOG4499|consen  115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL  194 (310)
T ss_pred             ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence            35799998443333322233333444433333332        222578898888766544 5577787787  55553 


Q ss_pred             ----eEEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 002782           94 ----CLRSWKGH----DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD  155 (882)
Q Consensus        94 ----~~~~~~~h----~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~  155 (882)
                          .+..++..    .-.--.++.+.+|.+.++.-..++|.-.|..+|+.+..++-....|+++||--.
T Consensus       195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence                33333221    111234666788888888778899999999999999999988999999999643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.26  E-value=1.6  Score=50.56  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=53.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782          103 GPAIGMACHPSGGLLATAGADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~  181 (882)
                      -.|..+.++|+|++||..|..| |.|-.+.. ......+.+....|.|-.+.-+ ..  ++.                  
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~--~~~------------------  142 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ER--FFT------------------  142 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hh--hcc------------------
Confidence            4688899999999999988755 44444421 1111122322333333333221 11  111                  


Q ss_pred             EEecCcccceEEEEEccC---CCEEEEEeCCCeEEEEecCCc
Q 002782          182 ATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       182 ~~l~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~  220 (882)
                         ..+...|..+.|+|.   +..|+.-..|+++++||+...
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence               112345667777775   477888888888888888643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=1.2  Score=43.90  Aligned_cols=163  Identities=14%  Similarity=0.178  Sum_probs=111.4

Q ss_pred             ecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782           56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG  134 (882)
Q Consensus        56 l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~  134 (882)
                      +.|-...|+++.|+|+.+.|++....+.-.||=-.+|..++++.-. -..--.+.+..+|+++++--.++.+.++.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4455566999999999999999988888888888899999987531 233456788888988888778888988888655


Q ss_pred             eEEEEee---------cC-CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe---EEEEecCc-------ccceEEE
Q 002782          135 FCTHYFK---------GH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKH-------FSRVTSM  194 (882)
Q Consensus       135 ~~~~~~~---------~h-~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~h-------~~~v~~l  194 (882)
                      ..+..++         .+ +.....++|.|....  |+.+-.-.-+.||.+....   .+.....+       -..|.++
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            3222111         12 566889999998766  6667776667777654322   11111111       2357788


Q ss_pred             EEccC-CCEEEEEeCCCeEEEEecCCc
Q 002782          195 AITSD-GSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       195 ~~s~~-~~~l~s~~~dg~i~vwd~~~~  220 (882)
                      .|.+. +..|+-+..++.+...|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            88864 455666667777777776543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.12  E-value=0.46  Score=53.77  Aligned_cols=224  Identities=15%  Similarity=0.149  Sum_probs=113.6

Q ss_pred             EEEEEeecC------CeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCcEEEEeeCC------CeEEEEecCCCCCCC
Q 002782          412 ILIVTGSKD------NSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDA  478 (882)
Q Consensus       412 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~l~s~~~d------g~i~~wd~~~~~~~~  478 (882)
                      .+++.|+.+      ..+..+|..++.......- ....-.++++..+  .+.++|+.|      .++..||.....   
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~---  360 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ---  360 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc---
Confidence            346666665      3677888887744333221 1122333444433  378888888      345666665432   


Q ss_pred             CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc-----EEEEeCCCcee--EEEEecccCceEEEEEcCCCCEE
Q 002782          479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-----ACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVV  551 (882)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~-----i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l  551 (882)
                           +.............  -...-+|.+.|+|+.||.     +..||..+.+-  +..+.........+.  -+|.+.
T Consensus       361 -----W~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iY  431 (571)
T KOG4441|consen  361 -----WTPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLY  431 (571)
T ss_pred             -----eeccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEE
Confidence                 11111111111111  111237889999999874     66777665432  111111111122222  247788


Q ss_pred             EEeeCCC------cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCeeEEE--ecc
Q 002782          552 ITASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIAT--YDK  618 (882)
Q Consensus       552 ~s~~~d~------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~~~~~--~~~  618 (882)
                      ++|+.++      ++..||..++.-...-.........-.-.-++...+.||.||     .|..||..+.+....  ...
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            8887554      467788766543221111111111112234667778888776     377788877664433  222


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCC-----EEEEECCC
Q 002782          619 HEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDST  651 (882)
Q Consensus       619 h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iw~~~~  651 (882)
                      ....+....+  ++...++||.||.     |..||..+
T Consensus       512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            2333333333  6777788887765     45555444

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=96.06  E-value=3.5  Score=46.48  Aligned_cols=402  Identities=13%  Similarity=0.152  Sum_probs=167.8

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEecCCc-------eeeeeecC--cceeeEEEecCC--CCCcccccccchhhhhhc
Q 002782          190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDY-------SCKLTVPT--YEMVEAVCAIPP--GSAFDSFLSSYNQQTIKK  258 (882)
Q Consensus       190 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  258 (882)
                      .-..++.+|.|+.++.+..+|.+.++.+...       ......+.  ...+..++|..+  +....             
T Consensus        45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p-------------  111 (504)
T PF10433_consen   45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNP-------------  111 (504)
T ss_dssp             T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS--------------
T ss_pred             CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCc-------------
Confidence            4567889999999999999999999998871       11111222  445666777651  11100             


Q ss_pred             cccccceEEEEEcCCC--eEEE--EECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782          259 KRRSLEIHFITVGERG--IVRM--WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  334 (882)
Q Consensus       259 ~~~~~~~~~~~~~~~g--~v~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  334 (882)
                           ...++.....+  .+..  |+...+..............  .........+...|.....+.+..++.+.+-+..
T Consensus       112 -----~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l--~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~  184 (504)
T PF10433_consen  112 -----TLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRL--PNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHL  184 (504)
T ss_dssp             -----EEEEEEEETT-EEEEEEEE--------EETTTTEEEE----EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE--
T ss_pred             -----eEEEEEEEecccceeEEEeeecccccceeeeeccccccc--cccCCCccEEEEcCCCCcEEEEECCEEEEEeccc
Confidence                 00111111211  2223  44443322222211111000  0000011334444555555555555555554322


Q ss_pred             ccccccceeeeeeee-cccCCceEEEEE------eCCCCcEEEEEEcCCcEEEEeCCCcee--eeeeeCC-CcceEEeee
Q 002782          335 EVPEKKMELILSKRL-VGYNEEILDLKF------LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDT  404 (882)
Q Consensus       335 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~------~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~-~~~v~~~~~  404 (882)
                      ..+... ........ .....-+.....      ...+...+..+..+|.+....+.....  ....-+. .....++. 
T Consensus       185 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~-  262 (504)
T PF10433_consen  185 IGSGDY-SFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT-  262 (504)
T ss_dssp             ----TT-EEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE-
T ss_pred             cccccc-ccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE-
Confidence            111000 00000000 111122222222      345677899999999999987765331  1122222 44445554 


Q ss_pred             eeecCCCEEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccC---CCc------EEEEe---eCCCeEEEEe
Q 002782          405 CALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK---LQN------FLVSG---SSDHTIKVWS  470 (882)
Q Consensus       405 ~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~---~~~------~l~s~---~~dg~i~~wd  470 (882)
                       ...++..+++.|+.  |+.+.-|....-+.+..+. .-++|..+++.+.   +..      .++++   +.+|.+++..
T Consensus       263 -~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  263 -YLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             -EESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             -EEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence             44555223566654  4555555544444444443 4467888888532   221      23443   3578888875


Q ss_pred             cCCCCCCCCCccccc-chhhhhhc--CCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCC---CceeEEEEe--cc---cCc
Q 002782          471 FDGLSDDAEQPMNLK-AKAVVAAH--GKDINSLAVAP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--GH---KRG  538 (882)
Q Consensus       471 ~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~---~~~~~~~~~--~h---~~~  538 (882)
                      -.-.         .. ........  -..+..+.... ++.+++.+..+. -+++.+.   ..+.+..+.  +-   ...
T Consensus       341 ~Gi~---------~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~T  410 (504)
T PF10433_consen  341 NGIG---------IEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPT  410 (504)
T ss_dssp             ESBE---------EE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-E
T ss_pred             ccCC---------ceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCC
Confidence            3211         00 00000111  12233333222 245666665544 3444443   233322221  11   111


Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782          539 IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  617 (882)
Q Consensus       539 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  617 (882)
                      +.+-.+.  +..++=... ..|++.+...++......... ..|...+  -++.+++.+-.+|.+.++.+..........
T Consensus       411 l~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~  485 (504)
T PF10433_consen  411 LAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDN  485 (504)
T ss_dssp             EEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeee
Confidence            2222222  333333333 448888877777766554332 3343333  345677777788999999988776643332


Q ss_pred             -----cCCCceEEEEEcC
Q 002782          618 -----KHEDKIWALAVGK  630 (882)
Q Consensus       618 -----~h~~~v~~l~~s~  630 (882)
                           .....|.|+...|
T Consensus       486 ~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  486 DETILELDNEISCLSIEP  503 (504)
T ss_dssp             ----EE-SS-EEEEE---
T ss_pred             ccccccCCCceEEEEeCC
Confidence                 1467888888765

...

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.00  E-value=0.0019  Score=71.31  Aligned_cols=187  Identities=18%  Similarity=0.300  Sum_probs=106.6

Q ss_pred             CeEEEEeCCCceE-EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782          421 NSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  499 (882)
Q Consensus       421 g~i~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (882)
                      +.+++-+..+... -...++..+.+..+.|....-..+.  -.-|.+.+|+++............   ......+.++.-
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v---~~~~p~gs~~~~  185 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV---TPITPYGSDPQL  185 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE---eecCcCCCCcce
Confidence            4455544433221 1224455667777777432211111  233667899987543222211111   112223334444


Q ss_pred             EEEcC---CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEE-----------EcCCCCEEEEeeCCCcEEEEec
Q 002782          500 LAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE-----------FSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       500 ~~~s~---~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                      +.|.|   +.-+++.+..++++++........ ..+.+|...++.++           .||||..+++++.||.++.|.+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55544   677888898999998877655432 33455776665543           6899999999999999888875


Q ss_pred             C-----CCceeeEeecCcC-CEEEEEEEeC-------C--CEEEEeec-CCeEEEEEcCCCeeE
Q 002782          566 S-----DGSCLKTFEGHTS-SVLRASFLTR-------G--AQIVSCGA-DGLVKLWTVRTGECI  613 (882)
Q Consensus       566 ~-----~~~~~~~~~~h~~-~v~~~~~s~~-------g--~~l~s~~~-dg~i~iwd~~~~~~~  613 (882)
                      .     .-.|+...+.|.+ +-.|.-|..+       +  .++++++. +..+++|.-...+|+
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3     3356777777773 3322223221       1  13455444 457999998877776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.99  E-value=0.72  Score=52.24  Aligned_cols=227  Identities=15%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             CCcEEEEEEcC------CcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecC------CeEEEEeCCCc
Q 002782          365 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR  431 (882)
Q Consensus       365 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~  431 (882)
                      .+.++++|+..      ..+..||..++.......-. ...-.++   ...++. +.++|+.|      .++..||..+.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~~~~-lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVLNGK-LYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEECCE-EEEEccccCCCcccceEEEecCCCC
Confidence            44566666555      35777888776443322211 1112222   233444 47888877      35777888776


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCe-----EEEEecCCCCCCCCCcccccchhhhhhcCCCee-EEEEcCC
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN-SLAVAPN  505 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~  505 (882)
                      +-.....-..... ......-+..+.++|+.||.     +..||..+..        +.....   ...... .-...-+
T Consensus       360 ~W~~~a~M~~~R~-~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~---m~~~r~~~gv~~~~  427 (571)
T KOG4441|consen  360 QWTPVAPMNTKRS-DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAP---MLTRRSGHGVAVLG  427 (571)
T ss_pred             ceeccCCccCccc-cceeEEECCEEEEEeccccccccccEEEecCCCCc--------ccccCC---CCcceeeeEEEEEC
Confidence            6443222111111 11111112337888888864     5566655431        111111   111111 2222347


Q ss_pred             CcEEEEEcCCC------cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCCCc-----EEEEecCCCceee
Q 002782          506 DSLVCTGSQDR------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLK  572 (882)
Q Consensus       506 ~~~la~~s~dg------~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-----i~iwd~~~~~~~~  572 (882)
                      |.+.++|+.++      ++..||..+..-.  ..+........ ++ .-++.+.+.|+.|+.     |..||..+.+-..
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            88888888665      4667777665322  22221111122 22 235778888887763     6778876554322


Q ss_pred             E--eecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCe
Q 002782          573 T--FEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE  611 (882)
Q Consensus       573 ~--~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~  611 (882)
                      .  .......+ .+ ..-++...+.|+.||     +|..||..+++
T Consensus       506 v~~m~~~rs~~-g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  506 VAPMTSPRSAV-GV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccCccccccc-cE-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            1  21111111 11 223556667777776     46666655544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.98  E-value=0.025  Score=38.89  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC   94 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~   94 (882)
                      ...|++++|+|...+||.|+.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.95  E-value=1.9  Score=42.50  Aligned_cols=182  Identities=12%  Similarity=0.102  Sum_probs=111.8

Q ss_pred             cEEEEEEccCCCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782          443 AVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  520 (882)
Q Consensus       443 ~v~~v~~s~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i  520 (882)
                      ....+.|..++. ++-+.+.-|  .|+.+|+.++.....        ..+ ...---..++.. ++++....-.++...+
T Consensus        46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~--------~~l-~~~~FgEGit~~-~d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQS--------VPL-PPRYFGEGITIL-GDKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEE--------EE--TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred             cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEE--------EEC-CccccceeEEEE-CCEEEEEEecCCeEEE
Confidence            344566756654 666776666  577788776531100        000 001111233333 3455555667899999


Q ss_pred             EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-----CCEEEEEEEeCCCEEEE
Q 002782          521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS  595 (882)
Q Consensus       521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s  595 (882)
                      ||..+.+.+.++.- ...=|.++  .|++.|+.+.....++++|..+.+..+++.-..     ..++-+.+. +|...|-
T Consensus       115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred             EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence            99999999998873 45667777  467778888888899999999888877765332     234556665 6766666


Q ss_pred             eecCCeEEEEEcCCCeeEEEecc------------C---CCceEEEEEcCCCCEEEEEe
Q 002782          596 CGADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG  639 (882)
Q Consensus       596 ~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~  639 (882)
                      .-....|...|..+|+++..++.            +   .+-.+.+|+.|....|...|
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66677888899999999887641            1   24578899988766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.88  E-value=2.5  Score=43.23  Aligned_cols=111  Identities=12%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE-CCC
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-LLA  177 (882)
Q Consensus        99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd-~~~  177 (882)
                      ..-.+.+..+.-++||+++++++......-||.....-...-+.....|..|.|.|++.   |......|.|++=+ ...
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~---lw~~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN---LWMLARGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC---EEEEeCCcEEEEccCCCC
Confidence            34457889999999999999987656667888765433334445678999999999854   44455888888877 222


Q ss_pred             CeEEEE--ec--CcccceEEEEEccCCCEEEEEeCCCeEE
Q 002782          178 KKCVAT--LD--KHFSRVTSMAITSDGSTLISAGRDKVVN  213 (882)
Q Consensus       178 ~~~~~~--l~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~  213 (882)
                      ......  ..  ...-.+..++|.+++...++|+ .|.+.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence            222221  11  1222478999998877666555 45443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.82  E-value=0.56  Score=50.08  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=90.1

Q ss_pred             ccccCC--ceEEccCCCEEEEEeCCeEEE-EEcCCCce--eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782           18 QFYGGG--PLVVSSDGSFIACACGESINI-VDLSNASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL   92 (882)
Q Consensus        18 ~~y~g~--~va~s~dg~~la~~~~~~I~i-~d~~~~~~--~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~   92 (882)
                      .+|.|.  .+..++||.+++++..+.+.. ||  .|..  ...-......++++.+.+++..++++ ..|.+ +|....+
T Consensus       235 ~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G  310 (398)
T PLN00033        235 SYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTG  310 (398)
T ss_pred             ceeccceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCC
Confidence            356655  466789999999999886543 44  3322  22222335678999999999887666 44554 4444444


Q ss_pred             e-----eEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCCCcEEEEEEecCCCccEEE
Q 002782           93 K-----CLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLF  162 (882)
Q Consensus        93 ~-----~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~f~~~~~~~~l~  162 (882)
                      .     .......  ....+..+.|.+++..+++| ..|.+.... +.|+.-...+   .-......+.|.++++   .+
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---g~  385 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK---GF  385 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc---eE
Confidence            3     1222221  12358999999988876665 567666554 4444323322   2345688999877644   66


Q ss_pred             EEeCCCcEEEE
Q 002782          163 SGSDDATVRVW  173 (882)
Q Consensus       163 sgs~dg~I~vw  173 (882)
                      ..+.+|.|.-|
T Consensus       386 ~~G~~G~il~~  396 (398)
T PLN00033        386 VLGNDGVLLRY  396 (398)
T ss_pred             EEeCCcEEEEe
Confidence            66778877655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.75  E-value=3.6  Score=44.15  Aligned_cols=301  Identities=14%  Similarity=0.174  Sum_probs=154.7

Q ss_pred             CCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEE---eCC-CCcEEEEEEcCCcEEEEeCCC--ce-
Q 002782          315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LGE-EEQYLAVATNIEQVQVYDLSS--MS-  387 (882)
Q Consensus       315 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-~~~~l~~~~~~~~i~i~d~~~--~~-  387 (882)
                      ....+++++..|.+++|...........+.....+   ..+|..+..   .+. +...||+ -.-..+.+|.+..  +. 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence            34577888999999999986544333333333333   355665554   333 3345555 4557888888731  11 


Q ss_pred             ------eeeeeeCCCcceEEeeeeee----cCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782          388 ------CSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  457 (882)
Q Consensus       388 ------~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l  457 (882)
                            .+..+..|.=.-.+..+|.-    ..++.++.+-+.||.+.+++-+.-.....+.. .--...+++.+... .+
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sf  189 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SF  189 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EE
Confidence                  12223333322222222222    22346689999999999999776554444333 22233456776655 68


Q ss_pred             EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC
Q 002782          458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR  537 (882)
Q Consensus       458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~  537 (882)
                      ++++.+..+..|............       .......             =-..+.....--|.+.=|+.+..+.    
T Consensus       190 vt~sss~~l~~Yky~~La~~s~~~-------~~~~~~~-------------~~~~~~k~l~~dWs~nlGE~~l~i~----  245 (418)
T PF14727_consen  190 VTASSSWTLECYKYQDLASASEAS-------SRQSGTE-------------QDISSGKKLNPDWSFNLGEQALDIQ----  245 (418)
T ss_pred             EEecCceeEEEecHHHhhhccccc-------ccccccc-------------ccccccccccceeEEECCceeEEEE----
Confidence            888888899998865431100000       0000000             0000122223345544444443332    


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE-EEE----eCC---CEEEEeecCCeEEEEEcCC
Q 002782          538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA-SFL----TRG---AQIVSCGADGLVKLWTVRT  609 (882)
Q Consensus       538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~-~~s----~~g---~~l~s~~~dg~i~iwd~~~  609 (882)
                         .+.++.....+++-+. .++.+.+- +|......+ ......++ .|.    ..+   ..++.++.++.+.||.  .
T Consensus       246 ---v~~~~~~~~~IvvLge-r~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d  317 (418)
T PF14727_consen  246 ---VVRFSSSESDIVVLGE-RSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--D  317 (418)
T ss_pred             ---EEEcCCCCceEEEEec-ceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--C
Confidence               2222222223333332 44555543 343322221 12222111 121    122   2488889999999995  4


Q ss_pred             CeeEEEeccCCCceEEEEE---cCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782          610 GECIATYDKHEDKIWALAV---GKKTEMFATGGSDALVNLWHDSTAAE  654 (882)
Q Consensus       610 ~~~~~~~~~h~~~v~~l~~---s~~~~~l~s~~~dg~i~iw~~~~~~~  654 (882)
                      .+.+..-.....+| ++..   ..-...|++-+.+|.+.+-=+.|+..
T Consensus       318 ~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  318 TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence            45555444333443 4433   23355889999999999988888764

>PRK13684 Ycf48-like protein; Provisional

Probab=95.70  E-value=2.1  Score=45.03  Aligned_cols=150  Identities=13%  Similarity=0.081  Sum_probs=87.8

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRV-WDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT  137 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~i-wd~~~~~-~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~  137 (882)
                      ...+.++++.|++.+++++.. |.+.. +|- .++ -.....+-...+.++.+.++++.+++| ..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            346889999999877766654 54432 221 122 111222345688999999999877765 4576543234444432


Q ss_pred             EEeec----CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCC
Q 002782          138 HYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       138 ~~~~~----h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .....    -...+..+.|.|++.   ++.++.+|.|. .....++.-....   .-......+.|..+++. +..+..|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G  323 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRG  323 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCC---EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCc
Confidence            22211    123478888988643   55666777554 4555555444432   22235777877766655 5566688


Q ss_pred             eEEEEec
Q 002782          211 VVNLWDL  217 (882)
Q Consensus       211 ~i~vwd~  217 (882)
                      .|..|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8877753

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=95.67  E-value=6.5  Score=46.56  Aligned_cols=186  Identities=14%  Similarity=0.206  Sum_probs=94.0

Q ss_pred             cCCeEEEEeCCCceEEeeeecc-cccEEEEEE---cc----CC-CcEEEEee---------CCCeEEEEecCCCCCCCCC
Q 002782          419 KDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SK----KL-QNFLVSGS---------SDHTIKVWSFDGLSDDAEQ  480 (882)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~---s~----~~-~~~l~s~~---------~dg~i~~wd~~~~~~~~~~  480 (882)
                      ..+.|.+.+..+++.+..+.-. ...+.++..   ..    .+ +.++++|.         .-|.+.++|+-..-+.+..
T Consensus      1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred             ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence            3456666666666555443321 122333322   11    11 33677664         2488999997653222221


Q ss_pred             ccc-ccchhh-hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC-CceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782          481 PMN-LKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  557 (882)
Q Consensus       481 ~~~-~~~~~~-~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  557 (882)
                      |.. .+.... .....++|..++ .-+|.++ ++ ..-.|.+|+++ ....+..-- -.-++.-....--.++|+.|.--
T Consensus      1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~l~-~~-~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ 1157 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGHLL-SS-QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVM 1157 (1366)
T ss_pred             CcccceeeeeehhhcccceEEEE-EeccEEE-Ec-cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhh
Confidence            111 111111 123345555554 3356444 33 23569999994 333332211 22233333333346677777766


Q ss_pred             CcEEEEecCCCceeeEeec---CcCCEEEEEEEeCCC--EEEEeecCCeEEEEEcC
Q 002782          558 KTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGA--QIVSCGADGLVKLWTVR  608 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~g~--~l~s~~~dg~i~iwd~~  608 (882)
                      ..|.+...+..-...++-+   ..-.+.++.|.-||.  +++++..|+.|+++-..
T Consensus      1158 ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1158 KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             hceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            6777666544322222221   223577788888876  46888889999888654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.38  E-value=0.055  Score=37.24  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782          102 DGPAIGMACHPSGGLLATAGADRKVLVWDV  131 (882)
Q Consensus       102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~  131 (882)
                      ...|.+++|+|...+||.|+.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            467999999999999999999999999998

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.34  E-value=7.7  Score=45.27  Aligned_cols=106  Identities=14%  Similarity=0.138  Sum_probs=67.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEe---ecCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCCeEEEEee--
Q 002782           73 KLLFSSGHSREIRVWDLSTLKCLRSW---KGHDGPAIGMACHPSG------GLLATAGADRKVLVWDVDGGFCTHYFK--  141 (882)
Q Consensus        73 ~~las~~~dg~i~iwd~~~~~~~~~~---~~h~~~V~~l~fs~~~------~~lasg~~dg~v~vwd~~~~~~~~~~~--  141 (882)
                      ..++.+-.+|.+..+.......+..+   ..-+..|.|+++.++.      ++++.++.|+++++..+.-..++..+.  
T Consensus       550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q  629 (1205)
T KOG1898|consen  550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ  629 (1205)
T ss_pred             eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence            34555556666666655333223333   2235788999998866      579999999999999998766666554  


Q ss_pred             cCCCcEEEEEEecC---CC----ccEEEEEeCCCcEEEE--ECCCC
Q 002782          142 GHKGVVSSILFHPD---TD----KSLLFSGSDDATVRVW--DLLAK  178 (882)
Q Consensus       142 ~h~~~V~~l~f~~~---~~----~~~l~sgs~dg~I~vw--d~~~~  178 (882)
                      +-..++.++++.+.   +.    ..+|.+|-.+|.+.-.  |.-+|
T Consensus       630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G  675 (1205)
T KOG1898|consen  630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG  675 (1205)
T ss_pred             ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence            44556666666432   21    4567778777766544  33444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.08  E-value=3.8  Score=43.26  Aligned_cols=199  Identities=11%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             EEEE-eeCCCeEEEEecCCCCCCCCCcccccchhhhh-hcCCCeeEEEEcCCCcEEEEEcC------CCcEEEEeCCCce
Q 002782          456 FLVS-GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLV  527 (882)
Q Consensus       456 ~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~s~------dg~i~iwd~~~~~  527 (882)
                      +|+. |-..+.|.+.|+.+....+.-........... ..-.....+-.-|+|++++++-.      -|.+.++|-++.+
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~  168 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE  168 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence            4444 44788999999875432111111111111111 01112223444578888877432      2458888888888


Q ss_pred             eEEEEecccC---ceEEEEEcCCCCEEEEeeC--------------------CCcEEEEecCCCceeeEeecCc--CCEE
Q 002782          528 SVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEGHT--SSVL  582 (882)
Q Consensus       528 ~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~h~--~~v~  582 (882)
                      ..........   --..+-|.|..+.++|...                    ..++.+||+.+.+.++++.--.  ..+.
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL  248 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL  248 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence            8777765332   2356677887788887643                    3579999999999999987432  2456


Q ss_pred             EEEEEeC--CCEEEEee-cCCeEEEE-EcCCCe----eEEEeccC-----------------CCceEEEEEcCCCCEEEE
Q 002782          583 RASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVGKKTEMFAT  637 (882)
Q Consensus       583 ~~~~s~~--g~~l~s~~-~dg~i~iw-d~~~~~----~~~~~~~h-----------------~~~v~~l~~s~~~~~l~s  637 (882)
                      .+.|..+  ..+=++++ -.++|..| .-..++    .+.++...                 ..-|+.+.+|.|+++|..
T Consensus       249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv  328 (461)
T PF05694_consen  249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV  328 (461)
T ss_dssp             EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred             EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence            6778644  44433333 34445444 334443    22233211                 234788999999998876


Q ss_pred             Ee-CCCCEEEEECCCHHH
Q 002782          638 GG-SDALVNLWHDSTAAE  654 (882)
Q Consensus       638 ~~-~dg~i~iw~~~~~~~  654 (882)
                      ++ .+|.|+.||++....
T Consensus       329 s~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  329 SNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             EETTTTEEEEEE-SSTTS
T ss_pred             EcccCCcEEEEecCCCCC
Confidence            55 589999999997643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.07  E-value=0.81  Score=49.02  Aligned_cols=143  Identities=12%  Similarity=0.082  Sum_probs=82.4

Q ss_pred             CeeEEEEcCCCcEEEEEc-----------CCC-cEEEEeCCC--ce--eEEEEecccCceEEEEEcCCCCEEEEeeCCCc
Q 002782          496 DINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKT  559 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s-----------~dg-~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~  559 (882)
                      ....++|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++ +++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            457899999999887753           223 677776432  22  223444334456889999988 444 444433


Q ss_pred             EEEEecCCC-----c--ee-eEeec----CcCCEEEEEEEeCCCEEEEeecC-------------------CeEEEEEcC
Q 002782          560 IKIWSISDG-----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTVR  608 (882)
Q Consensus       560 i~iwd~~~~-----~--~~-~~~~~----h~~~v~~~~~s~~g~~l~s~~~d-------------------g~i~iwd~~  608 (882)
                      .++.|....     +  .+ ..+..    +......+.|.|||.+.++.+..                   |.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            334354321     1  11 22322    23447789999999876665521                   445555655


Q ss_pred             CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782          609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSD  641 (882)
Q Consensus       609 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  641 (882)
                      .++....-.+ ....+.++|+++|+++++-..+
T Consensus       173 g~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       173 GGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            5443222223 2345789999999988765544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=0.23  Score=57.29  Aligned_cols=142  Identities=11%  Similarity=0.067  Sum_probs=93.4

Q ss_pred             CCeeEEEEcCCCcEEEEEc--CCCcEEEEeCCCceeEE-----EEecc------cCceEEEEEcCCCC-EEEEeeCCCcE
Q 002782          495 KDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVDQ-VVITASGDKTI  560 (882)
Q Consensus       495 ~~i~~~~~s~~~~~la~~s--~dg~i~iwd~~~~~~~~-----~~~~h------~~~v~~l~~s~~~~-~l~s~~~d~~i  560 (882)
                      .+|..+...+|+...++..  .+-.|..||+.+.....     -+..|      ..-..++.|.|.-. ..+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            3566777778876655433  33478899987643221     12222      22356778887533 45666788999


Q ss_pred             EEEecCCCce-eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC----CCceEEEEEcCCCCEE
Q 002782          561 KIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH----EDKIWALAVGKKTEMF  635 (882)
Q Consensus       561 ~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l  635 (882)
                      ++..+..... ..++ ......++++|+|.|++++.|-..|++.-|.. +++....+.+.    ...|.++.|-....++
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence            8887754322 2222 25567899999999999999999999998874 45544444322    4679999998777776


Q ss_pred             EEE
Q 002782          636 ATG  638 (882)
Q Consensus       636 ~s~  638 (882)
                      ++-
T Consensus       259 vvy  261 (1405)
T KOG3630|consen  259 VVY  261 (1405)
T ss_pred             EEe
Confidence            653

>PHA03098 kelch-like protein; Provisional

Probab=95.00  E-value=1  Score=51.27  Aligned_cols=172  Identities=9%  Similarity=0.077  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCceee--eecCCCccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEE--eecCCCCEEEEEEc
Q 002782           41 SINIVDLSNASIKS--TIEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTLKCLRS--WKGHDGPAIGMACH  111 (882)
Q Consensus        41 ~I~i~d~~~~~~~~--~l~~~~~~I~~l~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~V~~l~fs  111 (882)
                      .+..||+.+++-..  .+........+++  -+++..+.||.+     ..+..||..+.+-...  +....... ++ ..
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~  387 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VN  387 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EE
Confidence            47788988776432  1221122222232  357777778764     3577888776543221  11111111 11 22


Q ss_pred             CCCCEEEEEeCC------CcEEEEECCCCeEEEEeecCCCc-EEEEEEecCCCccEEEEEeCC--------CcEEEEECC
Q 002782          112 PSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGSDD--------ATVRVWDLL  176 (882)
Q Consensus       112 ~~~~~lasg~~d------g~v~vwd~~~~~~~~~~~~h~~~-V~~l~f~~~~~~~~l~sgs~d--------g~I~vwd~~  176 (882)
                      -+++..+.||.+      ..+..||+.+++-...-...... -.+++. .+ + .+++.|+.+        ..+.+||..
T Consensus       388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~-~-~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HD-G-KIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-EC-C-EEEEECCccCCCCCcccceEEEecCC
Confidence            356667777632      45888998876543221100000 112222 22 2 345555432        238888987


Q ss_pred             CCeEEEE--ecCcccceEEEEEccCCCEEEEEeCC-----CeEEEEecCCce
Q 002782          177 AKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS  221 (882)
Q Consensus       177 ~~~~~~~--l~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~~  221 (882)
                      +++-...  +.........+.  -+++.++.||.+     +.+.+||..+.+
T Consensus       465 ~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        465 TNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            7653322  211111112222  266677777654     467778776654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.99  E-value=2.1  Score=40.54  Aligned_cols=110  Identities=17%  Similarity=0.315  Sum_probs=67.1

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcC--CCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CC---cEEEE-ECCC---
Q 002782           24 PLVVSSDGSFIACACGESINIVDLS--NASIKSTIEGGSDTITALALSPDDKLLFSSGH---SR---EIRVW-DLST---   91 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~--~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg---~i~iw-d~~~---   91 (882)
                      .+.-++.+.+++++.+..|.+|++.  ..+.+.++..- +.|..++++..|+||++--.   ..   .+|+| ||..   
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            3444443334344666689999988  33456666643 78999999999999999633   12   56775 4432   


Q ss_pred             -CeeEE-EeecC---------------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782           92 -LKCLR-SWKGH---------------------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF  135 (882)
Q Consensus        92 -~~~~~-~~~~h---------------------~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~  135 (882)
                       ..+++ ++-||                     +.++.+++..|-..-|+.|+ ++.+.+|.+..+.
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence             12222 22221                     33667888888544555554 4778899875443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.93  E-value=1.1  Score=50.86  Aligned_cols=154  Identities=13%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             ccCCceEEccCCCEEEEEeCCeEEEEEcCCCceee------eecC----------------CCccEEEEEEcC--CCCEE
Q 002782           20 YGGGPLVVSSDGSFIACACGESINIVDLSNASIKS------TIEG----------------GSDTITALALSP--DDKLL   75 (882)
Q Consensus        20 y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~------~l~~----------------~~~~I~~l~~sp--d~~~l   75 (882)
                      |-..-.|++. +.+|+++.++.|.||++.......      .+..                -...|..|.+..  +...|
T Consensus        39 fKNNLtalsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL  117 (717)
T PF08728_consen   39 FKNNLTALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL  117 (717)
T ss_pred             cccceeEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence            3334445555 899999999999999986443211      1100                112455665554  34678


Q ss_pred             EEEeCCCcEEEEECCC-------C----e---------eEEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCC
Q 002782           76 FSSGHSREIRVWDLST-------L----K---------CLRSWKGHDGPAIGMACH--PSGGLLATAGADRKVLVWDVDG  133 (882)
Q Consensus        76 as~~~dg~i~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~fs--~~~~~lasg~~dg~v~vwd~~~  133 (882)
                      +.+.+||.|.+|.+++       .    .         +...++ -...++.++++  ...+++|+++....|.||-...
T Consensus       118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l  196 (717)
T PF08728_consen  118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL  196 (717)
T ss_pred             EEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence            8999999999997631       0    0         111222 23578899998  7888888888888888876543


Q ss_pred             C--eEEE-EeecCCCcEEEEEEecCCC---c-cEEEEEeCCCcEEEEEC
Q 002782          134 G--FCTH-YFKGHKGVVSSILFHPDTD---K-SLLFSGSDDATVRVWDL  175 (882)
Q Consensus       134 ~--~~~~-~~~~h~~~V~~l~f~~~~~---~-~~l~sgs~dg~I~vwd~  175 (882)
                      .  +..+ .-..|...|.+++|.++..   + ..+++++-.|.+.+|++
T Consensus       197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  197 VDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            2  1111 1113677899999987652   1 36888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA03098 kelch-like protein; Provisional

Probab=94.65  E-value=1.4  Score=50.16  Aligned_cols=105  Identities=8%  Similarity=0.036  Sum_probs=52.8

Q ss_pred             CCCcEEEEEcCC------CcEEEEeCCCceeEEE--EecccCceEEEEEcCCCCEEEEeeCCC--------cEEEEecCC
Q 002782          504 PNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK--------TIKIWSISD  567 (882)
Q Consensus       504 ~~~~~la~~s~d------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d~--------~i~iwd~~~  567 (882)
                      -++++.+.|+.+      ..+..||..+.+-...  +....... ++ ...++.+++.|+.+.        .+.+||..+
T Consensus       388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            367777777732      3578888876532211  11111111 12 223566667776432        378888876


Q ss_pred             Ccee--eEeecCcCCEEEEEEEeCCCEEEEeecC-----CeEEEEEcCCCee
Q 002782          568 GSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC  612 (882)
Q Consensus       568 ~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~  612 (882)
                      ++-.  ..+....... .+ ...++..++.||.+     +.+.+||..+.+.
T Consensus       466 ~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        466 NKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            5432  2121111111 11 22366666777654     3677787776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.58  E-value=7.1  Score=41.04  Aligned_cols=239  Identities=13%  Similarity=0.135  Sum_probs=115.1

Q ss_pred             eEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE---Eeee----ecccccEEEEEEccC---CCcEEEEeeCC-----
Q 002782          399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK---LQNFLVSGSSD-----  463 (882)
Q Consensus       399 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~v~~s~~---~~~~l~s~~~d-----  463 (882)
                      ...++  +.|+++.  +++...|.|++++ ..+..   +...    .........++++|+   ...+.++.+..     
T Consensus         4 P~~~a--~~pdG~l--~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    4 PRSMA--FLPDGRL--LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             EEEEE--EETTSCE--EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             ceEEE--EeCCCcE--EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            34555  7888764  4456699999999 33332   2222    234567889999994   22233333321     


Q ss_pred             ---CeEEEEecCCCCCCCCCcccc-cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc-------------EEEEeCCCc
Q 002782          464 ---HTIKVWSFDGLSDDAEQPMNL-KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRLPDL  526 (882)
Q Consensus       464 ---g~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~-------------i~iwd~~~~  526 (882)
                         ..|.-|.+............+ ...............++|.|||.+.++.+..+.             |.-.+.. +
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G  157 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-G  157 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-S
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-C
Confidence               234444443321000000000 000000112234567999999977666544332             2222211 1


Q ss_pred             e-------------eEEE-EecccCceEEEEEcCC-CCEEEEe-eCCCcEEEEecCCC----------------------
Q 002782          527 V-------------SVVT-FRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG----------------------  568 (882)
Q Consensus       527 ~-------------~~~~-~~~h~~~v~~l~~s~~-~~~l~s~-~~d~~i~iwd~~~~----------------------  568 (882)
                      +             .... -.|+ .....++|.|. |.+.++= +.|..=.|--+..|                      
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             cCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            1             0000 1112 23567899998 5555432 22222222222211                      


Q ss_pred             -------ceeeEeecCcCCEEEEEEEe-------CCCEEEEeecCCeEEEEEcCCCeeEE---E-eccCCCceEEEEEcC
Q 002782          569 -------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIA---T-YDKHEDKIWALAVGK  630 (882)
Q Consensus       569 -------~~~~~~~~h~~~v~~~~~s~-------~g~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~s~  630 (882)
                             .++..+. +...++.+.|-.       .|.+++..-..+.|....++++..+.   . +.....++..+++.|
T Consensus       237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                   0122233 335677788764       34466666556788888877553322   1 223445899999999


Q ss_pred             CCCEEEEEeCCCCEE
Q 002782          631 KTEMFATGGSDALVN  645 (882)
Q Consensus       631 ~~~~l~s~~~dg~i~  645 (882)
                      ||.+.++...+|.|.
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999999888888763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.45  E-value=2.2  Score=47.55  Aligned_cols=181  Identities=10%  Similarity=0.066  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe----ecCCCCEEEEEEcCCCCE
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW----KGHDGPAIGMACHPSGGL  116 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~l~fs~~~~~  116 (882)
                      .|.|++. +|..+..+--....+-.+.|+.+.. |++...+|++++|++-. +.+...    ......|..+.|..+|-.
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceE
Confidence            5899997 5666655543344888999998876 56667899999999843 222221    223345666666666633


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeec---CCCcEEEEEEecCCC-ccEEEEEe-CCCcEEEEECCCC-eEEEEecCcccc
Q 002782          117 LATAGADRKVLVWDVDGGFCTHYFKG---HKGVVSSILFHPDTD-KSLLFSGS-DDATVRVWDLLAK-KCVATLDKHFSR  190 (882)
Q Consensus       117 lasg~~dg~v~vwd~~~~~~~~~~~~---h~~~V~~l~f~~~~~-~~~l~sgs-~dg~I~vwd~~~~-~~~~~l~~h~~~  190 (882)
                      +.+  .+|.+.+-+-.+......+..   ...+-+|-...+++. ...++-.. ..| ..+.-..+. .....+....+.
T Consensus       142 vlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~  218 (829)
T KOG2280|consen  142 VLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS  218 (829)
T ss_pred             EEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence            333  345544433222111222221   111112222222211 11111111 011 111111111 111222222356


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782          191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       191 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      +..+.+||+.++|+--...|.|.+-+.+..+....+.
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            8889999999999999999999998887766655544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.25  E-value=1.4  Score=47.79  Aligned_cols=158  Identities=12%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             cceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCCC---cEEEEeeCCCeEEEEec
Q 002782          397 EIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       397 ~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~---~~l~s~~~dg~i~~wd~  471 (882)
                      .++..+   .+.||+.++.+.-  .+|.+++=|   ...+    +.-..|..++|.|-+.   .-+++....+.|.+|.+
T Consensus        20 HPvhGl---aWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGL---AWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccce---EecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            456666   4467776455542  233332211   1222    3445788999988531   13556667789999998


Q ss_pred             CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc--eeEEEEecccCceEEEEEcCCCC
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQ  549 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~  549 (882)
                      .....+.................--...+.|+|....|++-+....-.++++...  .....++ ..+-|.|.+|.+||+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ  168 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence            7443222111111111111111111245789999988887766554445555432  2223333 567799999999999


Q ss_pred             EEEEeeCC-CcEEEEec
Q 002782          550 VVITASGD-KTIKIWSI  565 (882)
Q Consensus       550 ~l~s~~~d-~~i~iwd~  565 (882)
                      .|+++-+. =.-++||-
T Consensus       169 RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEEEEeCCeEEEEEecC
Confidence            88776443 34678874

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.20  E-value=1.7  Score=48.85  Aligned_cols=115  Identities=10%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC---
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL---  176 (882)
Q Consensus       101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~---  176 (882)
                      .-...+.+.-|.-++..++-+....+.|||...+..-..-. ...+.|..+.|...++...+++.+-.+.|.++.-.   
T Consensus        28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            33455566666656554444455789999999887544333 35788999999766666668888889999998431   


Q ss_pred             --C----CeEEEEe--cCcc-cceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782          177 --A----KKCVATL--DKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       177 --~----~~~~~~l--~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~  217 (882)
                        .    ...+..+  ..|+ .+|.+..|.++|..++.+|  +.+.+++-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              1    1233322  3344 5799999999996665554  56888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.85  E-value=1.7  Score=48.73  Aligned_cols=118  Identities=15%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-cCcCCEEEEEEE--eCCCEEEEeecCCeEEEEEc
Q 002782          531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~  607 (882)
                      ++...-..++-+.-|.-++..++-+...++.|||...+.....-. ...+.|..+.|.  |+|+.+++.|-.+.|.++.-
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            344344455556666656666665666789999998886433221 356889999885  78999999999999999853


Q ss_pred             C---------CCeeEEEe--ccCC-CceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782          608 R---------TGECIATY--DKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       608 ~---------~~~~~~~~--~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                      .         +..++..+  ..|. .+|.+..|.++|.+++.+|  +.+.|++-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            2         12233333  2343 6789999999998776655  447777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.73  E-value=3.2  Score=45.15  Aligned_cols=115  Identities=20%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             ccEEEEEEcCCC----CEEEEEeCCCcEEEEECC-----CCeeEEEeecC---CCCE--EEEEEcCCCCEEEEEeCCCcE
Q 002782           61 DTITALALSPDD----KLLFSSGHSREIRVWDLS-----TLKCLRSWKGH---DGPA--IGMACHPSGGLLATAGADRKV  126 (882)
Q Consensus        61 ~~I~~l~~spd~----~~las~~~dg~i~iwd~~-----~~~~~~~~~~h---~~~V--~~l~fs~~~~~lasg~~dg~v  126 (882)
                      +-|..+.|+|-+    ..|.+......|.||.+.     ..+.+.+-..+   .-+|  ..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            468999999953    234444556799999885     23333322211   1122  346799999988876655544


Q ss_pred             EEEECC--CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782          127 LVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA  177 (882)
Q Consensus       127 ~vwd~~--~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~  177 (882)
                      .+.++.  +.+....+ ...+.|.|.+|.+||.+.+++.|+ .=.-++||-..
T Consensus       137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q  187 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ  187 (671)
T ss_pred             EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence            556653  33333344 357889999999999886666655 33467888543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.72  E-value=14  Score=43.12  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 002782           60 SDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH  138 (882)
Q Consensus        60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~  138 (882)
                      ...|..+.++|+|++||..|..| |.|-.+.. ...-..+.+....|.|-.+.=+..++                     
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------  141 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------  141 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence            45789999999999999988865 44444422 11112222222333333222221111                     


Q ss_pred             EeecCCCcEEEEEEecCC-CccEEEEEeCCCcEEEEECCCC
Q 002782          139 YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAK  178 (882)
Q Consensus       139 ~~~~h~~~V~~l~f~~~~-~~~~l~sgs~dg~I~vwd~~~~  178 (882)
                       ...+...|..+.|+|.+ ....|+.-+.|+++|+||+...
T Consensus       142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence             11245568888899875 2345778888999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=8  Score=38.27  Aligned_cols=273  Identities=12%  Similarity=0.063  Sum_probs=147.2

Q ss_pred             ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC---c
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---R  431 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~  431 (882)
                      -+.++.+   .+++...+..+.-++++|+.+......+..-.-  ...+.++.-.|++ ...+..|.-+.+.|+.+   .
T Consensus        88 l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          88 LFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCc
Confidence            3445555   456888888889999999987655433321110  0222224466777 55555454555667654   3


Q ss_pred             eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782          432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  511 (882)
Q Consensus       432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~  511 (882)
                      ..........+.-..++.|-+   +...+..|+-+.+-|+......        ........+..+.++..+++..+++.
T Consensus       162 ~lagrya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sP--------vli~~~n~g~g~~sv~vsdnr~y~vv  230 (370)
T COG5276         162 QLAGRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSP--------VLIGSYNTGPGTYSVSVSDNRAYLVV  230 (370)
T ss_pred             eeeeeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCC--------eEEEEEecCCceEEEEecCCeeEEEE
Confidence            444455555555567777754   5677778999999998764211        00001112236677888877766666


Q ss_pred             EcCCCcEEEEeCCCceeEEEEec--ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce---eeEeecCcCCEEEEEE
Q 002782          512 GSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF  586 (882)
Q Consensus       512 ~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~  586 (882)
                      ..  --+.+-|..+.+....+..  ...++.--.|.-.+++...+..+.-+.+-|+.+..-   ...+......-..+. 
T Consensus       231 y~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~-  307 (370)
T COG5276         231 YD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR-  307 (370)
T ss_pred             cc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE-
Confidence            53  4467777766543333221  222221112233377777777777777777754321   111110110111121 


Q ss_pred             EeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782          587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       587 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                       .-|.++..+..+ ...+-+....+......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus       308 -ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         308 -AYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             -EecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence             123344443333 2333343333333333333444555566667778888999999999975

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.66  E-value=12  Score=40.20  Aligned_cols=144  Identities=11%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----
Q 002782           63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-----  135 (882)
Q Consensus        63 I~~l~~spd~~~las~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~-----  135 (882)
                      ...+..++||.+++++..-..++-||-  |..  ...-......++++.|.+++..++++ .+|.+ +|....+.     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            345667889888877765444444553  221  11122235678999999999887765 44554 44444443     


Q ss_pred             EEEEeec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCC
Q 002782          136 CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       136 ~~~~~~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .......  -...+..+.|.+++.   ++.++..|.+.... ..|+.-....   .-......+.|.++++ .+..+.+|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G  391 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDG  391 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCc
Confidence            2222221  123588899987754   67777888766654 4444433322   2235688999877655 44555678


Q ss_pred             eEEEE
Q 002782          211 VVNLW  215 (882)
Q Consensus       211 ~i~vw  215 (882)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            76654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=93.64  E-value=13  Score=40.50  Aligned_cols=71  Identities=15%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA  177 (882)
Q Consensus       101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~  177 (882)
                      ...+|.++.++..|. +-.|+.|| +..+|..+++.++.-.... ..|..+.-.-.+.   +..|+.+| |.+.+...
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            457899999999885 55667777 7788888888766544433 4555555544433   88888888 77777655

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.60  E-value=10  Score=39.23  Aligned_cols=239  Identities=10%  Similarity=0.067  Sum_probs=115.5

Q ss_pred             cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-------------
Q 002782          367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-------------  433 (882)
Q Consensus       367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------  433 (882)
                      .+++.|+++|...+. .........--.+...|.++.  ..+..+.+++.++....++.+++..-..             
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            589999997766555 443211112223456888888  6777777677777777799998732211             


Q ss_pred             --EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch-hhhhhcCCCeeEEEEcCC--CcE
Q 002782          434 --VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--DSL  508 (882)
Q Consensus       434 --~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~~~  508 (882)
                        ....-+|.......++.......++++....+|.++..........   ..+.. ........++..+..+++  ...
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFERPG  167 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccceE
Confidence              0111233333333333332222344555566777765432210000   00000 000011123333433433  567


Q ss_pred             EEEEcCCCcEEEEeCCC--ceeEE-----EEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--EeecCc
Q 002782          509 VCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFEGHT  578 (882)
Q Consensus       509 la~~s~dg~i~iwd~~~--~~~~~-----~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~  578 (882)
                      +++|+..+...++++..  .....     ...... .++....+ +++.+|++- . ....+-|.......+  .+. -.
T Consensus       168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~-~-~~~v~Vn~~G~~~~r~~~l~-w~  243 (302)
T smart00036      168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY-D-EFGVFVNLYGKRRSRNPILH-WE  243 (302)
T ss_pred             EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE-C-cEEEEEeCCCCccccceEEE-cC
Confidence            77777643344444432  11000     011111 33333333 345555443 2 334444543212211  121 23


Q ss_pred             CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc
Q 002782          579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK  618 (882)
Q Consensus       579 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  618 (882)
                      ..+.++++.  ..+|+.-+.+ .|.|+++.+++.++++..
T Consensus       244 ~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      244 FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD  280 (302)
T ss_pred             CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence            345556665  4677777654 499999999999988863

Unpublished observations.

>PHA02790 Kelch-like protein; Provisional

Probab=93.52  E-value=5  Score=44.82  Aligned_cols=182  Identities=8%  Similarity=0.019  Sum_probs=82.2

Q ss_pred             EEEEEeecCC-----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccc
Q 002782          412 ILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNL  484 (882)
Q Consensus       412 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~  484 (882)
                      .++++|+.++     .+..||..++.......-...........-++. +.+.|+.+  .++..||.....        +
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~--------W  343 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAA--------W  343 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCe--------E
Confidence            4466666442     466788877654433221111111111122333 66777654  356777754321        1


Q ss_pred             cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC---cEEEEeCCCceeEEE--EecccCceEEEEEcCCCCEEEEeeCCCc
Q 002782          485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDKT  559 (882)
Q Consensus       485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg---~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d~~  559 (882)
                      ...........  ......-+|++.+.|+.++   .+..||..+..-...  +....... ++ ..-++++.+.|+   .
T Consensus       344 ~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~  416 (480)
T PHA02790        344 VNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---N  416 (480)
T ss_pred             EECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---c
Confidence            11111111111  1122234788888887654   467788765432211  11111111 12 123466666663   4


Q ss_pred             EEEEecCCCce--eeEeecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCe
Q 002782          560 IKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE  611 (882)
Q Consensus       560 i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~  611 (882)
                      +.+||..+++-  +..+....... ++ ..-+|+..+.||.++     .+..||..+++
T Consensus       417 ~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        417 AEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             eEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            67888766532  22222111111 12 234667777777542     45556655443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.49  E-value=3.2  Score=47.15  Aligned_cols=111  Identities=13%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             CeeEEEEcC--CCcEEEEEcCCCcEEEEeCCCc--------------------eeEEEEecccCceEEEEEc--CCCCEE
Q 002782          496 DINSLAVAP--NDSLVCTGSQDRTACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFS--PVDQVV  551 (882)
Q Consensus       496 ~i~~~~~s~--~~~~la~~s~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~l~~s--~~~~~l  551 (882)
                      .|+.+.+..  +...|+.+..||.|.+|.+++-                    ++...+. ....+|++++.  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            466665544  4578999999999999975211                    0112222 34579999998  888899


Q ss_pred             EEeeCCCcEEEEecCCC--ce-eeEeecCcCCEEEEEEEeCC-----C-EEEEeecCCeEEEEEc
Q 002782          552 ITASGDKTIKIWSISDG--SC-LKTFEGHTSSVLRASFLTRG-----A-QIVSCGADGLVKLWTV  607 (882)
Q Consensus       552 ~s~~~d~~i~iwd~~~~--~~-~~~~~~h~~~v~~~~~s~~g-----~-~l~s~~~dg~i~iwd~  607 (882)
                      |+++....|.||-....  +. ...-..|...|.+++|.++.     . +|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99998888888875432  11 11111256678899997653     2 7888899999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.43  E-value=0.5  Score=44.16  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             CCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCC
Q 002782          103 GPAIGMACHPSG------GLLATAGADRKVLVWDVDGG  134 (882)
Q Consensus       103 ~~V~~l~fs~~~------~~lasg~~dg~v~vwd~~~~  134 (882)
                      ..|.+++|||.|      -+||+.+.++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            489999999954      37888899999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.31  E-value=2.5  Score=45.26  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             CCceEEccCCCEEEEEe-------------CCeEEEEEcCC--Cc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782           22 GGPLVVSSDGSFIACAC-------------GESINIVDLSN--AS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREI   84 (882)
Q Consensus        22 g~~va~s~dg~~la~~~-------------~~~I~i~d~~~--~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i   84 (882)
                      ...+++.++|+++++-.             ++.|.+++-.+  |.  ....+...-...+.+++.++| +++ +......
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence            44799999999877642             23788887553  33  223343333456889999999 444 4444333


Q ss_pred             EEEECCC-----Ce--eE-EEeec----CCCCEEEEEEcCCCCEEEEEe
Q 002782           85 RVWDLST-----LK--CL-RSWKG----HDGPAIGMACHPSGGLLATAG  121 (882)
Q Consensus        85 ~iwd~~~-----~~--~~-~~~~~----h~~~V~~l~fs~~~~~lasg~  121 (882)
                      ++.|...     ++  .+ ..+..    +......++|.|||.+.++-+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3434421     11  12 22322    234577899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=93.23  E-value=21  Score=41.80  Aligned_cols=234  Identities=10%  Similarity=0.029  Sum_probs=110.8

Q ss_pred             eecCCCEEEEEeecCC----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC-----CeEEEEecCCCCC
Q 002782          406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD  476 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d-----g~i~~wd~~~~~~  476 (882)
                      ++|+++.+.++...+|    .+++.|+.++..+...-...  -..++|+++++.++++...+     ..|..+++.+...
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~  211 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS  211 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence            7889988555544444    58888998886432221111  14589999988666665433     3566667665421


Q ss_pred             CCCCcccccchhhhhhcCCCee-EEEEcCCCcEEEEEcC---CCcEEEEeCC--CceeEEEEecccCceEEEEEcCCCCE
Q 002782          477 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~la~~s~---dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~  550 (882)
                      ..        ..+......... .+..+.++++++..+.   ++.+.+++..  ++.....+.........+. ...+.+
T Consensus       212 ~d--------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        212 QD--------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             HC--------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            11        111111111222 3344557777665443   3468888843  3333222222222222222 333333


Q ss_pred             EEEeeC-CCc--EEEEecCCCceeeEeecC-c-CCEEEEEEEeCCCEEEEeecCCeEEE--EEcCCCeeEEEec-cCCCc
Q 002782          551 VITASG-DKT--IKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVKL--WTVRTGECIATYD-KHEDK  622 (882)
Q Consensus       551 l~s~~~-d~~--i~iwd~~~~~~~~~~~~h-~-~~v~~~~~s~~g~~l~s~~~dg~i~i--wd~~~~~~~~~~~-~h~~~  622 (882)
                      ++.... ...  |...++.+......+..+ . ..+..+.+. .+..+++...+|.-++  ++..++ .+..+. .....
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~  360 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY  360 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence            333222 123  333344421222344444 3 357777776 3345556666775444  454333 333333 22222


Q ss_pred             eEEEEEc--CCCC-EEEEEeC---CCCEEEEECCCH
Q 002782          623 IWALAVG--KKTE-MFATGGS---DALVNLWHDSTA  652 (882)
Q Consensus       623 v~~l~~s--~~~~-~l~s~~~---dg~i~iw~~~~~  652 (882)
                      +..+.++  +++. ++++.++   -+.+..++..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            3333344  3333 4444332   355677776654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.07  E-value=6.2  Score=37.44  Aligned_cols=111  Identities=19%  Similarity=0.257  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---C---cEEEE-ECCC-
Q 002782           64 TALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---R---KVLVW-DVDG-  133 (882)
Q Consensus        64 ~~l~~spd~~~las~~~dg~i~iwd~~--~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d---g---~v~vw-d~~~-  133 (882)
                      .+++-++. +.|..+.....|.+|++.  ..+.+.+|..- +.|..+.++..|+||+|--.+   .   .+++| ||+. 
T Consensus        21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            33444432 344444556789999988  44566777654 899999999999999996432   2   56664 3321 


Q ss_pred             ---CeEEE-EeecC---------------------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782          134 ---GFCTH-YFKGH---------------------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK  179 (882)
Q Consensus       134 ---~~~~~-~~~~h---------------------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~  179 (882)
                         ...+. ++-||                     +.++.+++..|-...  |+.|+. +.+.+|.+..+.
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~--LlVg~~-~~l~lf~l~~~~  166 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN--LLVGCG-NKLVLFTLKYQT  166 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC--EEEEcC-CEEEEEEEEEEE
Confidence               12111 22222                     234566666665444  555554 568889775443

>PHA02790 Kelch-like protein; Provisional

Probab=93.06  E-value=5.6  Score=44.43  Aligned_cols=167  Identities=9%  Similarity=0.025  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCcee--eeecCCCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE--EeecCCCCEEEEEEcCCC
Q 002782           41 SINIVDLSNASIK--STIEGGSDTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLR--SWKGHDGPAIGMACHPSG  114 (882)
Q Consensus        41 ~I~i~d~~~~~~~--~~l~~~~~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~--~~~~h~~~V~~l~fs~~~  114 (882)
                      .+..||+.+++-.  ..+.........+  .-+|...++||.+  ..+..||..+++-..  .+.....  ...+..-+|
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g  363 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINN  363 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECC
Confidence            4778898876532  2222222222222  2467777777753  357888876553222  2221111  112223367


Q ss_pred             CEEEEEeCC---CcEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE--EEecCc
Q 002782          115 GLLATAGAD---RKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV--ATLDKH  187 (882)
Q Consensus       115 ~~lasg~~d---g~v~vwd~~~~~~~~~~~--~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~--~~l~~h  187 (882)
                      +..+.||.+   ..+..||..++.-...-.  ...... +++ .-+ + .+.+.|   |.+.+||..+++-.  ..+...
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~-~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~~  436 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFG-R-RLFLVG---RNAEFYCESSNTWTLIDDPIYP  436 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EEC-C-EEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence            777777754   347789987765433211  011111 222 222 2 334444   45778988776533  222222


Q ss_pred             ccceEEEEEccCCCEEEEEeCC-----CeEEEEecCCc
Q 002782          188 FSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDY  220 (882)
Q Consensus       188 ~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~  220 (882)
                      .......  .-+|+..+.||.+     ..+..||..+.
T Consensus       437 r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        437 RDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            2222222  2366777777754     34556665543

>PRK13684 Ycf48-like protein; Provisional

Probab=92.92  E-value=14  Score=38.89  Aligned_cols=150  Identities=15%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCcEEE-EeCCCceeEEEE-ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCcee
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACV-WRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL  571 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~i~i-wd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  571 (882)
                      ...+.++.+.|++.+++++. .|.+.. ++ ..++.-... .+-...++++.+.++++.++++. .|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence            44678899999988777765 454432 22 222222222 23456789999999998877654 476653234444332


Q ss_pred             eEeec----CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec---cCCCceEEEEEcCCCCEEEEEeCCCCE
Q 002782          572 KTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALV  644 (882)
Q Consensus       572 ~~~~~----h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i  644 (882)
                      .....    ....+..+.+.+++..+ .++.+|.+. ...+.|+--....   .-......+.|..+++.++ .|..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            22111    12347778888877654 455677555 3445555433332   2223577777776666544 6667888


Q ss_pred             EEEEC
Q 002782          645 NLWHD  649 (882)
Q Consensus       645 ~iw~~  649 (882)
                      .-|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            77754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.79  E-value=1.9  Score=41.92  Aligned_cols=71  Identities=13%  Similarity=0.278  Sum_probs=52.6

Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCCceeeEe-------e-------cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782          544 FSPVDQVVITASGDKTIKIWSISDGSCLKTF-------E-------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  609 (882)
Q Consensus       544 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~  609 (882)
                      +..++.+|++.+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456889999999999999999998765332       1       2456788888888888777655 57889998765


Q ss_pred             CeeEEE
Q 002782          610 GECIAT  615 (882)
Q Consensus       610 ~~~~~~  615 (882)
                      +..+..
T Consensus        97 ~~W~~v  102 (219)
T PF07569_consen   97 GCWIRV  102 (219)
T ss_pred             ceeEEe
Confidence            554443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.64  E-value=0.067  Score=59.79  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC--Cceeeee-----eeCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782          348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCSYV-----LAGHSEIVLCLDTCALSSGKILIVTGSKD  420 (882)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  420 (882)
                      ...|+.+.+.++.|-..+...+.  ..-|.+.+|++.  .|+....     .......+.-+.||.....+..+..+.++
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            45677788888888554433333  334778888875  3333222     22233344455555544444557778888


Q ss_pred             CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782          421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  453 (882)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~  453 (882)
                      +.+++.+.++... ..+.+|...+..++|-..|
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence            8888877655432 3344577766666655443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.59  E-value=0.24  Score=51.88  Aligned_cols=268  Identities=13%  Similarity=0.130  Sum_probs=147.2

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  485 (882)
                      +.+.+.. ++.++.+..+..||-...... .. ...+....++|..+++..++.+-..+.+.+|++.....         
T Consensus        42 w~~e~~n-lavaca~tiv~~YD~agq~~l-e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---------  109 (615)
T KOG2247|consen   42 WRPEGHN-LAVACANTIVIYYDKAGQVIL-EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---------  109 (615)
T ss_pred             EecCCCc-eehhhhhhHHHhhhhhcceec-cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---------
Confidence            6677777 777777777888875443222 11 23344556788888876777888899999999975421         


Q ss_pred             chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                       .....+....-.-+.|++.+..++.+...|.+.|++..+...+...-.|...++++++.+.+. .+.++.|..+.+-..
T Consensus       110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQ  187 (615)
T ss_pred             -HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhh
Confidence             000011111112267889889999999999999999877766655555999999999998654 455555554443332


Q ss_pred             CCCceeeEee--cCcCCEE--EE---EEEeCCCEEEEeecCCeEEEE--Ec--CCCeeEEEeccCCCceEEEEEcCCCCE
Q 002782          566 SDGSCLKTFE--GHTSSVL--RA---SFLTRGAQIVSCGADGLVKLW--TV--RTGECIATYDKHEDKIWALAVGKKTEM  634 (882)
Q Consensus       566 ~~~~~~~~~~--~h~~~v~--~~---~~s~~g~~l~s~~~dg~i~iw--d~--~~~~~~~~~~~h~~~v~~l~~s~~~~~  634 (882)
                      . ++.....+  +......  .+   .|..-|..+.+.-. |.+.+.  .+  ..+..--.++.-.+-+.|..|--||..
T Consensus       188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i  265 (615)
T KOG2247|consen  188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYI  265 (615)
T ss_pred             c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccc
Confidence            1 11111111  1111000  01   12233334433221 111110  11  112111145555677888999888864


Q ss_pred             EEEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCc
Q 002782          635 FATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRP  694 (882)
Q Consensus       635 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~  694 (882)
                       .-+-.-|.|..-...+++...+...+.    ...+.+..+....-..+|+.++.+.++-
T Consensus       266 -~igf~ag~iV~iS~h~aeLgaeffqkl----dy~~aLqsiavsqcvnkaftlgdn~nkv  320 (615)
T KOG2247|consen  266 -LIGFDAGYIVSISAHNAELGAEFFQKL----DYRGALQSIAVSQCVNKAFTLGDNMNKV  320 (615)
T ss_pred             -cccccceeEEEEeccchHHHHHHHHHh----hHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence             334445555555555555544433322    2233444444555566666666554443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.56  E-value=1.2  Score=51.89  Aligned_cols=144  Identities=17%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE-----EeecC------CCCEEEEEEcCCCCE-EEEEeCCCcE
Q 002782           61 DTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLR-----SWKGH------DGPAIGMACHPSGGL-LATAGADRKV  126 (882)
Q Consensus        61 ~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~-----~~~~h------~~~V~~l~fs~~~~~-lasg~~dg~v  126 (882)
                      -+|..+...+|+...++....  -.|..||+.+...-+     -+..|      ..-..++.|.|.-.. .|....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            467788888898877665443  378899987543221     12222      234567788875432 4555678888


Q ss_pred             EEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC----cccceEEEEEccCCCE
Q 002782          127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK----HFSRVTSMAITSDGST  202 (882)
Q Consensus       127 ~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~----h~~~v~~l~~s~~~~~  202 (882)
                      +|..+.-......--.....+++++|+|.|..  ++.|-..|++.-|-.. .+....+.+    ....|.+++|-....+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ--l~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ--LFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccce--eeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence            88877433222111124567899999998877  9999999999988653 333333322    1367999999887777


Q ss_pred             EEEEe
Q 002782          203 LISAG  207 (882)
Q Consensus       203 l~s~~  207 (882)
                      +++-+
T Consensus       258 lvvy~  262 (1405)
T KOG3630|consen  258 LVVYG  262 (1405)
T ss_pred             EEEec
Confidence            76544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.17  E-value=9.9  Score=35.58  Aligned_cols=171  Identities=8%  Similarity=-0.001  Sum_probs=88.0

Q ss_pred             EEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782          412 ILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  489 (882)
Q Consensus       412 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  489 (882)
                      .++.+.+.  ...|+.||+.+++.+....-....+-.=-...-+..+..-.-.+|.-..+|.++..             .
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------------~  123 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------------E  123 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------------h
Confidence            33444443  44799999999987765432211111111112223344444566666777765432             1


Q ss_pred             hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--ccC---ceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782          490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKR---GIWSVEFSPVDQVVITASGDKTIKIWS  564 (882)
Q Consensus       490 ~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~l~~s~~~~~l~s~~~d~~i~iwd  564 (882)
                      +..+.-.-..-....|++-|..++...+++.-|..+.....++.-  ...   .+.-+.|- ||...|-.-.+..|...+
T Consensus       124 lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         124 LGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             hcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence            111221112223334666677776666777777665544333221  112   22334443 455555555555566667


Q ss_pred             cCCCceeeEee------------cCcCCEEEEEEEeCCCE-EEEe
Q 002782          565 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC  596 (882)
Q Consensus       565 ~~~~~~~~~~~------------~h~~~v~~~~~s~~g~~-l~s~  596 (882)
                      ..+|+.+..+.            .|.+-.+.+++.|++.. +++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            77777665543            24456778899888744 4443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.12  E-value=16  Score=37.61  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             EEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEeec--CC--------------------
Q 002782           63 ITALALSPDDKLLFSSG------------------HSREIRVWDLSTLKCLRSWKG--HD--------------------  102 (882)
Q Consensus        63 I~~l~~spd~~~las~~------------------~dg~i~iwd~~~~~~~~~~~~--h~--------------------  102 (882)
                      ...+.+.|+|..|++..                  .|+.+.--|++|++.+..++.  |-                    
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            45566778888777331                  245677778888988887643  10                    


Q ss_pred             -----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-cE--EEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782          103 -----GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-VV--SSILFHPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus       103 -----~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~-~V--~~l~f~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                           -.|.++...++|.+|+|.-.-..|.+.|..+|+.+..+.|..+ ..  ....|+-+.+..++-.+..++.|.++|
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence                 1367788888999999998889999999999999988876522 11  112233333333344445677777777


Q ss_pred             C
Q 002782          175 L  175 (882)
Q Consensus       175 ~  175 (882)
                      -
T Consensus       219 N  219 (299)
T PF14269_consen  219 N  219 (299)
T ss_pred             C
Confidence            6

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=92.08  E-value=24  Score=39.56  Aligned_cols=199  Identities=18%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             cccccCCceEEccCCCEEEEEeCC------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 002782           17 QQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE---IRVW   87 (882)
Q Consensus        17 ~~~y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~---i~iw   87 (882)
                      ..||.-|.+++|||++++|.+.+.      .+++.|+.+|+.+...-  .+....++|.+|++.|.-...|..   =++|
T Consensus       126 ~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~  203 (682)
T COG1770         126 HDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVW  203 (682)
T ss_pred             ccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence            357888899999999999998753      59999999998654322  234678999999988775544321   2233


Q ss_pred             --ECCC----CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEE--eecCCCcEEEEEEecCC
Q 002782           88 --DLST----LKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDT  156 (882)
Q Consensus        88 --d~~~----~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d---g~v~vwd~~~~~~~~~--~~~h~~~V~~l~f~~~~  156 (882)
                        .+.+    .+++..-+.. .--.++.-+.+..+|+....|   +.+++.+.+.......  ...-.+.-..+.  ..+
T Consensus       204 ~h~~gt~~~~d~lvyeE~d~-~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~  280 (682)
T COG1770         204 RHRLGTPGSSDELVYEEKDD-RFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGG  280 (682)
T ss_pred             EEecCCCCCcceEEEEcCCC-cEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecC
Confidence              3322    1222222211 122333345566666654432   5577777755432111  110111111111  112


Q ss_pred             CccEEEEEeCCC-cEEEEECC---CCeEEEEecCcccceEEEEEccCCCEEEEEeCCC---eEEEEecCCce
Q 002782          157 DKSLLFSGSDDA-TVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYS  221 (882)
Q Consensus       157 ~~~~l~sgs~dg-~I~vwd~~---~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~  221 (882)
                      +. +++-...+| ..++....   +...-..+..|...+.--.|+--..+|+...+++   .|++++..+++
T Consensus       281 d~-f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~  351 (682)
T COG1770         281 DR-FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE  351 (682)
T ss_pred             cE-EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc
Confidence            22 233333333 34444322   2223345556766666666666667777766553   57777776554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.97  E-value=3.3  Score=41.86  Aligned_cols=114  Identities=11%  Similarity=0.213  Sum_probs=72.1

Q ss_pred             CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeEEEEeec-----CCCcEEEE
Q 002782           82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFKG-----HKGVVSSI  150 (882)
Q Consensus        82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~------~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~l  150 (882)
                      ..|++||..+.+-...-.+-.+.|++|.|..+.++++.|.      ....+..||+.+..... +.+     -.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccCCCcEEEE
Confidence            4699999988776665556678999999997778888775      34678899998876432 332     24789888


Q ss_pred             EEecCCCccEEEEEe-CCC--cEEEEECCCCeEEEE-ecCcccceEEEEE
Q 002782          151 LFHPDTDKSLLFSGS-DDA--TVRVWDLLAKKCVAT-LDKHFSRVTSMAI  196 (882)
Q Consensus       151 ~f~~~~~~~~l~sgs-~dg--~I~vwd~~~~~~~~~-l~~h~~~v~~l~~  196 (882)
                      .+..+....+.+.|. .+|  .|..||=.+...+.. .......|..+.+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            886554444555554 333  456665444443333 2222334554443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.70  E-value=0.82  Score=30.49  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe
Q 002782          103 GPAIGMACHPSG---GLLATAGADRKVLVWDVDGGF  135 (882)
Q Consensus       103 ~~V~~l~fs~~~---~~lasg~~dg~v~vwd~~~~~  135 (882)
                      +.|.++.|||+.   .+|+..-.-|.|.|+|+.++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            468999999854   488888788999999998643

It contains a characteristic DLL sequence motif.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.41  E-value=0.86  Score=47.24  Aligned_cols=155  Identities=13%  Similarity=0.154  Sum_probs=95.2

Q ss_pred             CceEEccCCCEEEEEeCCeEEEEEcCCCcee-eeecCC--C---ccEE-EEEEcCCCCEEEEEeCCCcEEEE-ECCCC--
Q 002782           23 GPLVVSSDGSFIACACGESINIVDLSNASIK-STIEGG--S---DTIT-ALALSPDDKLLFSSGHSREIRVW-DLSTL--   92 (882)
Q Consensus        23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~-~~l~~~--~---~~I~-~l~~spd~~~las~~~dg~i~iw-d~~~~--   92 (882)
                      ..+-+.|||++|++-.+..+.|+++.+.... +.+-.+  .   ..|+ ++.+-..|.-|.+++.||.|.-| |+..+  
T Consensus       224 ~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~  303 (733)
T COG4590         224 SQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ  303 (733)
T ss_pred             HhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC
Confidence            4688899999999999999999988665422 122111  1   1222 22233456668888889999887 44322  


Q ss_pred             ---eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782           93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus        93 ---~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~  169 (882)
                         ..++.++-...++..+.-..+.+-+++-+..|++.++.-...+.+..-+ --..+.-++++|.+++  +++ -..|.
T Consensus       304 p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~--Ll~-e~~gk  379 (733)
T COG4590         304 PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY--LLS-EDQGK  379 (733)
T ss_pred             CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch--hee-ecCCc
Confidence               2333344334555555544455567777788888887765544332222 2235677889998775  544 34567


Q ss_pred             EEEEECCCCeEE
Q 002782          170 VRVWDLLAKKCV  181 (882)
Q Consensus       170 I~vwd~~~~~~~  181 (882)
                      |+++.+++..+-
T Consensus       380 i~~~~l~Nr~Pe  391 (733)
T COG4590         380 IRLAQLENRNPE  391 (733)
T ss_pred             eEEEEecCCCCC
Confidence            999888766543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.39  E-value=5.7  Score=41.62  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=88.2

Q ss_pred             ceEEccCCCEEEEEeCCeEEEEEcCCC--ceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE----E
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNA--SIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL----R   96 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~~I~i~d~~~~--~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~----~   96 (882)
                      .+-|....+.|++...+.+.=|-++..  ...-.+ ....++|.++.||+|.+.||+--.+.+|.+++....+..    .
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            344554455555555554444444322  222222 235679999999999999999999999999988433322    2


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782           97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSG  164 (882)
Q Consensus        97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg  164 (882)
                      +-+..+..|....|+.+ .-+|..+..| +-+|-+... +.++..+.|+..|.--.|.++..-.+|+++
T Consensus       107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            22334556888999876 4566655444 677766543 234455678888999999998665444444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.19  E-value=31  Score=39.09  Aligned_cols=54  Identities=13%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeC
Q 002782          536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTR  589 (882)
Q Consensus       536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~  589 (882)
                      ...+..+..||+.++|+--..+|.|.+-+++..+++..+.... .+...++|..+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            4568889999999999999999999999988877777766211 22224555543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.96  E-value=2.4  Score=46.90  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=51.4

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD  132 (882)
Q Consensus        59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~  132 (882)
                      ..+.++++.-+|.|+-++.+..||.|++|++...+....+. ...|-..+.|...|  |++...|..+.-|.-+
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence            34568899999999999999999999999997765433322 22444566676666  6666677878778643

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.92  E-value=26  Score=37.68  Aligned_cols=197  Identities=11%  Similarity=0.055  Sum_probs=109.6

Q ss_pred             ccCCCEEEEEeCCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CC
Q 002782           28 SSDGSFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GP  104 (882)
Q Consensus        28 s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~-~~  104 (882)
                      -.||+..+....+.|.-.|..++..+-....-  ...+..-.+..+|+ |..++.++.+...|..+|+.+....... ..
T Consensus        66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~  144 (370)
T COG1520          66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY  144 (370)
T ss_pred             eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence            34565555445557777888888755322211  12333333334776 7778888899999999999998887665 11


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC---cEEEEEEecCCCccEEEEEeC--CCcEEEEECCCCe
Q 002782          105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKK  179 (882)
Q Consensus       105 V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~f~~~~~~~~l~sgs~--dg~I~vwd~~~~~  179 (882)
                      +..-.+-.++ .+..++.++.+.-.|..+|........-..   .+..-....   ...++.+..  ++.+.-.|..+|.
T Consensus       145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA---SGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee---cceEEEecCCCcceEEEEEccCCc
Confidence            2222222233 333334678888888888877665442211   111111111   122555555  6667777887877


Q ss_pred             EEEEecCcc----cceEEEEEcc-----CCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782          180 CVATLDKHF----SRVTSMAITS-----DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY  229 (882)
Q Consensus       180 ~~~~l~~h~----~~v~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  229 (882)
                      .......+.    ..+.......     .+..++.++.++.+...+..+++.+...+..
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            665532111    1110011111     1123456667787888888888877776654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.62  E-value=1.6  Score=42.50  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------e-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 002782           68 LSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------K-------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG  133 (882)
Q Consensus        68 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~  133 (882)
                      +..++.+|.+.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|....|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4567899999999999999999998765432       1       2446677777777777666654 46677777654


Q ss_pred             C
Q 002782          134 G  134 (882)
Q Consensus       134 ~  134 (882)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.62  E-value=9.5  Score=35.70  Aligned_cols=68  Identities=18%  Similarity=0.056  Sum_probs=35.8

Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEE-EeCCCeEEEEecCCceeeeeec
Q 002782          160 LLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       160 ~l~sgs~--dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      ++.+.+.  ...|++||+.+++.+.+-.-....+..=-...-|.++.. .=.+|.-..+|.++.+++..++
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            3555443  346999999999877654333212211111112223322 2246777777777766555444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.60  E-value=15  Score=38.63  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=64.8

Q ss_pred             CeeEEEEcCCCcEEEEEcCC------CcEEEEeCCCceeEEEEe---------------cccCceEEEEEcCCCCEEEEe
Q 002782          496 DINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITA  554 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~s~~~~~l~s~  554 (882)
                      +..++++.++|.++++.-.+      ..|..++.. +.....+.               ..+....+++++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            56688888888888887777      778888866 54443331               145678999999999977665


Q ss_pred             eC-----CC--c-------EEEEe--cCC-CceeeE----eec-----CcCCEEEEEEEeCCCEEEE
Q 002782          555 SG-----DK--T-------IKIWS--ISD-GSCLKT----FEG-----HTSSVLRASFLTRGAQIVS  595 (882)
Q Consensus       555 ~~-----d~--~-------i~iwd--~~~-~~~~~~----~~~-----h~~~v~~~~~s~~g~~l~s  595 (882)
                      ..     |+  .       ++++.  ..+ +.....    +..     ....+..+.+.+++++|+.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            43     22  1       45544  443 322322    222     3467888999999987654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.46  E-value=19  Score=35.41  Aligned_cols=224  Identities=10%  Similarity=0.110  Sum_probs=130.3

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  485 (882)
                      ..++|.. -.++...|.|--.|..+|+....--+....-..|...|++...+ +-+.. .|.-.|-.+...       ..
T Consensus        69 papdG~V-Wft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt~ev-------t~  138 (353)
T COG4257          69 PAPDGAV-WFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKTLEV-------TR  138 (353)
T ss_pred             cCCCCce-EEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcccce-------EE
Confidence            5577765 67777777888888888887776666666667778888877333 22221 333333322210       00


Q ss_pred             chhhhhhcCCCeeEEEEcCCCcEEEEEcCC---------CcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  556 (882)
Q Consensus       486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  556 (882)
                      ............+...|.+.|.+-.++...         +.|++|+...          ......|+..|||..-++.-.
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyasla  208 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLA  208 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecc
Confidence            111122234567889999999998887532         2344444332          234677889999998888877


Q ss_pred             CCcEEEEecCCCceeeEeecC---cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE-EEeccCCCceEEEEEcCCC
Q 002782          557 DKTIKIWSISDGSCLKTFEGH---TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKT  632 (882)
Q Consensus       557 d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~  632 (882)
                      +..|-..|..++. -..+...   ...-..+--+|.|+.-+|....+.+..+|..+...+ ..+.+....-.++.+...+
T Consensus       209 gnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g  287 (353)
T COG4257         209 GNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG  287 (353)
T ss_pred             ccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence            7888877776652 2222211   122333444567777777777788888886554421 2233333444556665555


Q ss_pred             CEEEEEeCCCCEEEEECC
Q 002782          633 EMFATGGSDALVNLWHDS  650 (882)
Q Consensus       633 ~~l~s~~~dg~i~iw~~~  650 (882)
                      +...+--.-|.|.-+|-.
T Consensus       288 rVW~sea~agai~rfdpe  305 (353)
T COG4257         288 RVWLSEADAGAIGRFDPE  305 (353)
T ss_pred             cEEeeccccCceeecCcc
Confidence            555544444555555433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.39  E-value=26  Score=36.86  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             CCCeeEEEEcC-------CCcEEEEEcCCCcEEEEeCCCceeEEE---E-ecccCceEEEEEcCCCCEEEEeeCCCcEE
Q 002782          494 GKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT---F-RGHKRGIWSVEFSPVDQVVITASGDKTIK  561 (882)
Q Consensus       494 ~~~i~~~~~s~-------~~~~la~~s~dg~i~iwd~~~~~~~~~---~-~~h~~~v~~l~~s~~~~~l~s~~~d~~i~  561 (882)
                      ...+..+.|-.       .|.+++..-..+.|....+.....+..   + ......+..+++.|||.++++.+.+|.|.
T Consensus       252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            35566677654       456777766667788877764433222   2 22344799999999999999888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.28  E-value=12  Score=32.62  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEeecCCCcEEEEEE---ecCCCccEEEEEeCCCcEEEEE
Q 002782          106 IGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILF---HPDTDKSLLFSGSDDATVRVWD  174 (882)
Q Consensus       106 ~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~f---~~~~~~~~l~sgs~dg~I~vwd  174 (882)
                      ..-.|+....-|+.++.-|.|.|.+.....        .+..+. -...|++++-   .|+..+..|+.|+.. .+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence            344677777789998889999999875432        233333 4566777764   345556667777765 499999


Q ss_pred             CCCCeEEEEecCcccceEEEEEc---cCCCEEEEEeCCCeEEEEecCCceeee
Q 002782          175 LLAKKCVATLDKHFSRVTSMAIT---SDGSTLISAGRDKVVNLWDLRDYSCKL  224 (882)
Q Consensus       175 ~~~~~~~~~l~~h~~~v~~l~~s---~~~~~l~s~~~dg~i~vwd~~~~~~~~  224 (882)
                      +....-+..-.- ...|.++.+-   ....-++..+.+..|.-||....+...
T Consensus        80 V~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   80 VENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             cccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            988765543322 2556666662   222345555556777777776555443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.26  E-value=27  Score=36.90  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---
Q 002782           64 TALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT---  137 (882)
Q Consensus        64 ~~l~~spd~~~las~~~dg~i~iwd~~~~--~~~~~~-~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~---  137 (882)
                      +.+-|...++.|+ +.++|.+.=|-+...  ...-++ ....++|.++.||+|.+.||+--.+.+|.+.+.......   
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            3344443344333 334455555654322  122222 235679999999999999999999999999998543322   


Q ss_pred             -EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC-CeEEEEecCcccceEEEEEccCCCEEEEEe
Q 002782          138 -HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAG  207 (882)
Q Consensus       138 -~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~  207 (882)
                       +.-+..+..|...+|+.+. .  ++..+..| +-+|-... .+.++..+.|.-.|....|.++.+.++.++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~-e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSST-E--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHhccCcceeEEEEEecCe-e--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence             2223345568899998763 3  66666655 77776543 334555667888899999999887655444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.78  E-value=5.9  Score=42.11  Aligned_cols=143  Identities=17%  Similarity=0.262  Sum_probs=93.3

Q ss_pred             CCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE-------EEEEeCCCcEEEEECC-CCeEEEEe
Q 002782           70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL-------LATAGADRKVLVWDVD-GGFCTHYF  140 (882)
Q Consensus        70 pd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~-------lasg~~dg~v~vwd~~-~~~~~~~~  140 (882)
                      .|..+|. .|+....++--|++-|+.+-.|..|...  -+.|.|+.++       -+.|-.+..|.-.|.. .|..+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3455554 4555678888899999999999988766  5778875431       2334455556656653 23222111


Q ss_pred             --ec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782          141 --KG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  216 (882)
Q Consensus       141 --~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd  216 (882)
                        +.  ......+..-..   ..+++.++..|-|++||--..+....+++-...|..+..+.+|+++++.|.. .+.+-|
T Consensus       555 esKdY~tKn~Fss~~tTe---sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d  630 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTE---SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD  630 (776)
T ss_pred             eehhcccccccccccccc---CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence              11  112233333222   2459999999999999976555556677777899999999999999888854 566666


Q ss_pred             cC
Q 002782          217 LR  218 (882)
Q Consensus       217 ~~  218 (882)
                      +.
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            53

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.77  E-value=9.5  Score=41.87  Aligned_cols=164  Identities=9%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             eEEccCCCEEEEEeCCeEEEEEc-------CCCceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eE
Q 002782           25 LVVSSDGSFIACACGESINIVDL-------SNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CL   95 (882)
Q Consensus        25 va~s~dg~~la~~~~~~I~i~d~-------~~~~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~   95 (882)
                      ..+.|.-.+..+..++.+.||+.       .++.....+ .++...+.++        +++....|.|+.|+--+.. .+
T Consensus        31 ~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~~l~~  102 (422)
T PF08801_consen   31 MGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISHLLVL  102 (422)
T ss_dssp             EEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-TT--
T ss_pred             EEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchhhhhc
Confidence            45567777888889999999998       444444444 4444554444        3455667888888643221 11


Q ss_pred             EEe-------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782           96 RSW-------------KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF  162 (882)
Q Consensus        96 ~~~-------------~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~  162 (882)
                      .+.             ......+......+.+  ++.+..+|.|..........+..+          .+.+...     
T Consensus       103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l----------~y~~~~~-----  165 (422)
T PF08801_consen  103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYEL----------SYQQLSG-----  165 (422)
T ss_dssp             EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEE----------E-TT--------
T ss_pred             CccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEE----------EEEcCcC-----
Confidence            111             1011111112234444  444445566655554442222222          2211100     


Q ss_pred             EEeCCCcEEEEECCCCeEEEE----ecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782          163 SGSDDATVRVWDLLAKKCVAT----LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       163 sgs~dg~I~vwd~~~~~~~~~----l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~  219 (882)
                            .........+.....    .......|.++...+..+.+++...+|.|.+|++..
T Consensus       166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --------------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ------CccccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence                  000000000000000    111234488999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.26  E-value=13  Score=37.62  Aligned_cols=113  Identities=19%  Similarity=0.281  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEeec-----CCCCEEEEE
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG------HSREIRVWDLSTLKCLRSWKG-----HDGPAIGMA  109 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~------~dg~i~iwd~~~~~~~~~~~~-----h~~~V~~l~  109 (882)
                      .|++||..+.+=...-.+-.+.|++|.|..+.+++++|.      ....+..||+.+..-. .+.+     -.++|..+.
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence            699999887765554445567899999997777777773      3557889999876532 2322     247888888


Q ss_pred             EcC-CCC-EEEEEe-CCC--cEEEEECCCCeEEEE-eecCCCcEEEEEEec
Q 002782          110 CHP-SGG-LLATAG-ADR--KVLVWDVDGGFCTHY-FKGHKGVVSSILFHP  154 (882)
Q Consensus       110 fs~-~~~-~lasg~-~dg--~v~vwd~~~~~~~~~-~~~h~~~V~~l~f~~  154 (882)
                      +.. |+. ..+.|. .++  .|..||=..-..+.. ..+....|..+.+.|
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            743 333 343433 333  455665433332222 122244566666654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.00  E-value=0.05  Score=56.65  Aligned_cols=145  Identities=19%  Similarity=0.303  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeec
Q 002782           64 TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKG  142 (882)
Q Consensus        64 ~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~las-g~~dg~v~vwd~~~~~~~~~~~~  142 (882)
                      -...|-|.+.-++.++.+..+..||-. ++...... ..+....|+|+.++..++. +-..+.+.+||+.+.....--.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            345677877778999888889999843 33333332 3456678899998887665 44668999999976542211112


Q ss_pred             CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEE
Q 002782          143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN  213 (882)
Q Consensus       143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  213 (882)
                      ....-.-+.|++....  ++.|...|.+.+++..+.+.+.....|...++++++.+.+. .+.++.|..+.
T Consensus       116 g~~s~sll~wsKg~~e--l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~  183 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPE--LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS  183 (615)
T ss_pred             CcchHHHHhhccCCcc--ccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence            2222223678886655  88888999999999888777766666999999999998874 44455455443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.95  E-value=1.9  Score=28.81  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=26.4

Q ss_pred             ccEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 002782           61 DTITALALSPDD---KLLFSSGHSREIRVWDLST   91 (882)
Q Consensus        61 ~~I~~l~~spd~---~~las~~~dg~i~iwd~~~   91 (882)
                      +.|.++.|||+.   .+||.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   5899998899999999985

It contains a characteristic DLL sequence motif.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.84  E-value=6.3  Score=43.81  Aligned_cols=79  Identities=10%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782          534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  613 (882)
Q Consensus       534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~  613 (882)
                      .|.+.|--+..+..+..|+.-...-.+.++|+.+...-..+    +-.+.+.|.|....++.-+.|..-..|++.-.+.+
T Consensus       335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqv  410 (1636)
T KOG3616|consen  335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQV  410 (1636)
T ss_pred             cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCceEEEecCCcchhh
Confidence            37777777777776666666555566788888654221111    12334788888777777666654444466655554


Q ss_pred             EEe
Q 002782          614 ATY  616 (882)
Q Consensus       614 ~~~  616 (882)
                      ..+
T Consensus       411 t~~  413 (1636)
T KOG3616|consen  411 TMF  413 (1636)
T ss_pred             eee
Confidence            443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.68  E-value=31  Score=35.34  Aligned_cols=163  Identities=15%  Similarity=0.216  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCceeeeecCC------CccEEEEEEcCCC-----CEEEEEeC-CCcEEEEECCCCeeEEEeecCC------
Q 002782           41 SINIVDLSNASIKSTIEGG------SDTITALALSPDD-----KLLFSSGH-SREIRVWDLSTLKCLRSWKGHD------  102 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~------~~~I~~l~~spd~-----~~las~~~-dg~i~iwd~~~~~~~~~~~~h~------  102 (882)
                      .|.+||+.+++.++++.-+      ...+..+++....     .++..+.. .+-|.|+|+.+++.-+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6999999999988776532      4567888887632     34444433 4689999999988766554321      


Q ss_pred             -------------CCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----C---------eEEEEeecCCCcEEEEEE
Q 002782          103 -------------GPAIGMACHP---SGGLLATAGADRKVLVWDVDG-----G---------FCTHYFKGHKGVVSSILF  152 (882)
Q Consensus       103 -------------~~V~~l~fs~---~~~~lasg~~dg~v~vwd~~~-----~---------~~~~~~~~h~~~V~~l~f  152 (882)
                                   ..+..++.+|   ++++|....-.+ -.+|.+.+     .         ..+..+-...+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         2355556654   555555544322 12332211     0         011122111235566777


Q ss_pred             ecCCCccEEEEEeCCCcEEEEECCCC------eEEEEecCcccceEEEEEcc--CCCEEEEE
Q 002782          153 HPDTDKSLLFSGSDDATVRVWDLLAK------KCVATLDKHFSRVTSMAITS--DGSTLISA  206 (882)
Q Consensus       153 ~~~~~~~~l~sgs~dg~I~vwd~~~~------~~~~~l~~h~~~v~~l~~s~--~~~~l~s~  206 (882)
                      .+++  .++++--..+.|..|+....      +.+..-...-..+.++.+.+  +|.+.+.+
T Consensus       194 D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  194 DPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            7754  45777788899999998761      12221111235778888888  66555444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.61  E-value=24  Score=37.05  Aligned_cols=157  Identities=15%  Similarity=0.233  Sum_probs=95.2

Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCc------EEEEeCCC--c--eeE-----EEEecccC--------ceEEEEEcCCCCE
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRT------ACVWRLPD--L--VSV-----VTFRGHKR--------GIWSVEFSPVDQV  550 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~------i~iwd~~~--~--~~~-----~~~~~h~~--------~v~~l~~s~~~~~  550 (882)
                      -+.+..+.+.|++..+++.+.+|.      +..+++..  +  ..+     ..+....+        ...+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            346788999865555666666776      55555443  1  111     11111111        3457888888888


Q ss_pred             EEEeeCC------CcEEEEecCCCceeeEee---------------cCcCCEEEEEEEeCCCEEEEeec-----CC--e-
Q 002782          551 VITASGD------KTIKIWSISDGSCLKTFE---------------GHTSSVLRASFLTRGAQIVSCGA-----DG--L-  601 (882)
Q Consensus       551 l~s~~~d------~~i~iwd~~~~~~~~~~~---------------~h~~~v~~~~~s~~g~~l~s~~~-----dg--~-  601 (882)
                      +++.-.+      ..|+.++.. |+.+..+.               ......-.++++|+|+.|+++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887777      789999876 76655442               12345788999999997766543     22  1 


Q ss_pred             ------EEEE--EcCC-Cee----EEEecc-----CCCceEEEEEcCCCCEEEE-----EeCCCCEEEEECCC
Q 002782          602 ------VKLW--TVRT-GEC----IATYDK-----HEDKIWALAVGKKTEMFAT-----GGSDALVNLWHDST  651 (882)
Q Consensus       602 ------i~iw--d~~~-~~~----~~~~~~-----h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iw~~~~  651 (882)
                            ++++  |..+ ++.    ...+..     ....|..+.+-+++++|+-     .+....++|+.+.-
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                  4454  4444 322    223332     3567888999999987774     22345567766554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.61  E-value=39  Score=36.38  Aligned_cols=40  Identities=10%  Similarity=0.239  Sum_probs=20.1

Q ss_pred             EEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782          602 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  641 (882)
Q Consensus       602 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  641 (882)
                      +.+||+.+++....-..+...-...+..-++..++.||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            4578887765432111111111222344477788888754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.49  E-value=17  Score=39.05  Aligned_cols=26  Identities=12%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             CeeEEEEcCCCcEEEEEcCCCcEEEE
Q 002782          496 DINSLAVAPNDSLVCTGSQDRTACVW  521 (882)
Q Consensus       496 ~i~~~~~s~~~~~la~~s~dg~i~iw  521 (882)
                      .|..+..++.|..++.++.+|.+..+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            46778899999999999888854443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.32  E-value=2.2  Score=28.39  Aligned_cols=39  Identities=18%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             cCCCEEEEEeC--CeEEEEEcCCCceeeeecCCCccEEEEEE
Q 002782           29 SDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALAL   68 (882)
Q Consensus        29 ~dg~~la~~~~--~~I~i~d~~~~~~~~~l~~~~~~I~~l~~   68 (882)
                      |||++|+++..  +.|.++|+.+++.+..+.....+ ..++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence            68888888774  48999999999988887764333 34444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.32  E-value=30  Score=34.82  Aligned_cols=218  Identities=15%  Similarity=0.206  Sum_probs=120.1

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCC------Cce-EEeeeec-----ccccEEEEEEccCCC-----------cEEEEeeC
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSE------SRC-CVGVGTG-----HMGAVGAVAFSKKLQ-----------NFLVSGSS  462 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~------~~~-~~~~~~~-----~~~~v~~v~~s~~~~-----------~~l~s~~~  462 (882)
                      ++|.+.. -++....+...+||..      ... ++..+..     .....+.+.|+....           ..++.+++
T Consensus        30 ~~p~~~~-WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE  108 (336)
T TIGR03118        30 YRPGGPF-WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE  108 (336)
T ss_pred             ecCCCCE-EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence            6676654 6666667788889876      121 2222221     223566666664321           23677889


Q ss_pred             CCeEEEEecCCCCCCCCCcccccchhhhh-hcCC-CeeEEEEcC--CCcEE-EEEcCCCcEEEEeCCCceeE--EEEecc
Q 002782          463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGK-DINSLAVAP--NDSLV-CTGSQDRTACVWRLPDLVSV--VTFRGH  535 (882)
Q Consensus       463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~-~i~~~~~s~--~~~~l-a~~s~dg~i~iwd~~~~~~~--~~~~~h  535 (882)
                      ||+|.-|.-........     ....... .... --..+++..  .+.+| ++--..++|.+||-.-....  ..+...
T Consensus       109 dGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       109 DGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             CceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            99999998532211000     0001110 0111 123445443  23444 44456788999985432211  001100


Q ss_pred             -----cC--c---------eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee--cCcCCEEEEEEEe------CCC
Q 002782          536 -----KR--G---------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLT------RGA  591 (882)
Q Consensus       536 -----~~--~---------v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~------~g~  591 (882)
                           -.  .         |+-..-.++.+.=+.+..-|.|-+||+ +|..++++.  +.-+..+.++..|      .|.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                 00  0         111111222222233445578999997 678888774  3445666777754      466


Q ss_pred             EEEEeecCCeEEEEEcCCCeeEEEeccCC------CceEEEEEcC
Q 002782          592 QIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGK  630 (882)
Q Consensus       592 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~s~  630 (882)
                      .|+---.||+|..+|..+|+.+..+....      +..|.|.|..
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            77777779999999999999888876433      4579999965

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.49  E-value=18  Score=31.41  Aligned_cols=113  Identities=8%  Similarity=0.039  Sum_probs=69.2

Q ss_pred             EEcCCCcEEEEEcCCCcEEEEeCCCce--------eEEEEecccCceEEEEEcC-----CCCEEEEeeCCCcEEEEecCC
Q 002782          501 AVAPNDSLVCTGSQDRTACVWRLPDLV--------SVVTFRGHKRGIWSVEFSP-----VDQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       501 ~~s~~~~~la~~s~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~d~~i~iwd~~~  567 (882)
                      .|......|++++.-|.|.|++.....        .+..+. -...|++++-.+     ....|+.|+. .++..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            455555678888888999999876432        333333 456778776544     2346676665 7799999987


Q ss_pred             CceeeEeecCcCCEEEEEEEe---CCCEEEEeecCCeEEEEEcCCCeeEEEe
Q 002782          568 GSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVKLWTVRTGECIATY  616 (882)
Q Consensus       568 ~~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~i~iwd~~~~~~~~~~  616 (882)
                      ..-+..-+ -...|.++.+-.   ...-|+..+.+..|.-||..-.+...+.
T Consensus        83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             Cchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            76553333 235666666632   2234555555567777776555554443

>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation

Probab=87.37  E-value=2.5  Score=37.83  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=55.7

Q ss_pred             hccchHHHhhhccchHHHHHHHhhcCCch-------hHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 002782          667 LRGQELENAVLDADYTKAIQVAFELRRPH-------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK  739 (882)
Q Consensus       667 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~  739 (882)
                      ..++++..++...+..+|++.++.-.-..       ..+..+-.++. .....+++.++..|+.++...|++||-.-+..
T Consensus        38 ~~~~qvr~ll~~g~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~-s~k~sdI~~~v~~L~~~~~D~LMKYiYkg~~~  116 (152)
T PF04699_consen   38 PKEQQVRQLLSSGDNEEALKAALENPPYGSKDAVKDRALQLVLEVLT-SIKSSDIENAVKSLDSDQQDILMKYIYKGMES  116 (152)
T ss_dssp             GTHHHHHHHHHCT-HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHH-CS-GGGHHHHHCCS-HHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHhCCCHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHH-HccHHHHHHHHHhCCHHHHhHHHHHHHHhccC
Confidence            34567888999999999999998642111       11122222221 22345799999999999999999999888866


Q ss_pred             Ccch---HHHHHHHHHHhccCC
Q 002782          740 PKLC---HVAQFVLFQLFNIHP  758 (882)
Q Consensus       740 ~~~~---~~~~~~~~~~l~~~~  758 (882)
                      +...   .++..|-..++..-|
T Consensus       117 ~~~~s~~~~LL~WheK~~~~~G  138 (152)
T PF04699_consen  117 PSENSSGGVLLSWHEKLVEVAG  138 (152)
T ss_dssp             --TTHH-CHHHHHHHHHHHCCH
T ss_pred             ccCccHHHHHHHHHHHHHHHcC
Confidence            5433   345555555444443

The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.00  E-value=5.7  Score=41.51  Aligned_cols=244  Identities=8%  Similarity=0.100  Sum_probs=124.8

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCCceEEee-eecccccEEEEEEccCCC-------cEEEEeeCCCeEEEEecCCCCCC
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQ-------NFLVSGSSDHTIKVWSFDGLSDD  477 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~~~-------~~l~s~~~dg~i~~wd~~~~~~~  477 (882)
                      ..+.|...++.|..||.+.+....-...... .....-...-++..+.++       .+....+.+....+++.......
T Consensus       122 ~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~  201 (733)
T COG4590         122 QTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI  201 (733)
T ss_pred             cCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence            4466766699999999999886432111100 000000111122222222       13444555555555544322100


Q ss_pred             --CCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE-Ee-ccc----CceE-EEEEcCCC
Q 002782          478 --AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FR-GHK----RGIW-SVEFSPVD  548 (882)
Q Consensus       478 --~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~-~~-~h~----~~v~-~l~~s~~~  548 (882)
                        ............+.....++..+-..|||+.+.+-+. .++.++++.+...... +. ...    ..|+ .+..-..|
T Consensus       202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg  280 (733)
T COG4590         202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG  280 (733)
T ss_pred             hhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc
Confidence              0000011122223444567788899999999988765 7788888865432111 11 101    1122 22222346


Q ss_pred             CEEEEeeCCCcEEEE-ecCCC-c----eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc
Q 002782          549 QVVITASGDKTIKIW-SISDG-S----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  622 (882)
Q Consensus       549 ~~l~s~~~d~~i~iw-d~~~~-~----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~  622 (882)
                      .-|.+++.||-|.-| |+..+ .    .++.+.-...++..+.--.+.+-+++-+..|++.++.....+.+- +..--..
T Consensus       281 ~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~  359 (733)
T COG4590         281 FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQA  359 (733)
T ss_pred             eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcC
Confidence            678888999998887 44332 1    122222122233222222233456777778888877644333322 2222235


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782          623 IWALAVGKKTEMFATGGSDALVNLWHDSTA  652 (882)
Q Consensus       623 v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~  652 (882)
                      +.-+++||.+.++++-. .|.++++.+++.
T Consensus       360 ~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         360 PQLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             cceeeeCcccchheeec-CCceEEEEecCC
Confidence            56688999999988754 456888877653

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.70  E-value=14  Score=39.60  Aligned_cols=102  Identities=12%  Similarity=0.065  Sum_probs=60.1

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782           61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF  140 (882)
Q Consensus        61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~  140 (882)
                      ..|..+..|+.|..+|-+|.+|.+..+=....-.-..++..+..|+|=.|+-+.+ +.+.+                   
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss-------------------  163 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS-------------------  163 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC-------------------
Confidence            4677888899999999888888665543222222222332333344444433222 22221                   


Q ss_pred             ecCCCcEEEEEEecCC--CccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782          141 KGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLD  185 (882)
Q Consensus       141 ~~h~~~V~~l~f~~~~--~~~~l~sgs~dg~I~vwd~~~~~~~~~l~  185 (882)
                        ..-.+..++|+|+.  + ..|..-+.|..||+||+...+.+....
T Consensus       164 --~~ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  164 --TSLTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             --CceeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchhhccC
Confidence              11235567799875  3 336777889999999998777664443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.47  E-value=17  Score=38.87  Aligned_cols=144  Identities=14%  Similarity=0.144  Sum_probs=90.4

Q ss_pred             eEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCC--------CEEEEEeCCCcEEEEECC-CCe
Q 002782           25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSREIRVWDLS-TLK   93 (882)
Q Consensus        25 va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~--------~~las~~~dg~i~iwd~~-~~~   93 (882)
                      +....|..+|+..++.  .+.-.|++-|+.+-.+.-|...  -+.|.|+.        +.|+ |-++..|.--|.. .|.
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gN  549 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGN  549 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCC
Confidence            4445677777766654  6888899999999999887665  57788864        3343 3334444444442 332


Q ss_pred             eEEE--eec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782           94 CLRS--WKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus        94 ~~~~--~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~  169 (882)
                      .+..  .+.  ......+..-. .+.|+|.||..|.|++||--.-+....+.+....|..+..+.+|+. +|+||  ...
T Consensus       550 Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~-ilaTC--k~y  625 (776)
T COG5167         550 KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH-ILATC--KNY  625 (776)
T ss_pred             ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE-EEEee--cce
Confidence            2222  111  11122222222 4458999999999999998766666667778888999999988774 33333  344


Q ss_pred             EEEEEC
Q 002782          170 VRVWDL  175 (882)
Q Consensus       170 I~vwd~  175 (882)
                      +.+-|+
T Consensus       626 llL~d~  631 (776)
T COG5167         626 LLLTDV  631 (776)
T ss_pred             EEEEec
Confidence            666665

>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]

Probab=86.33  E-value=6.5  Score=34.29  Aligned_cols=92  Identities=18%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             ccchHHHhhhccchHHHHHHHhhcCCch--------hHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 002782          668 RGQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK  739 (882)
Q Consensus       668 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~  739 (882)
                      .+++++.++...+..+|+..|+.-.-+.        +.+.++..++. ......|+.++..|+.++...|.+||-+-+.+
T Consensus        38 ~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~-~ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~  116 (152)
T KOG3380|consen   38 DEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLT-SIKQADIEAAVKKLSTEEIDILMKYIYKGMEI  116 (152)
T ss_pred             ChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            4568889999999999999998644322        12222222211 22345899999999999999999999888876


Q ss_pred             Cc---chHHHHHHHHHHhccCCcc
Q 002782          740 PK---LCHVAQFVLFQLFNIHPPT  760 (882)
Q Consensus       740 ~~---~~~~~~~~~~~~l~~~~~~  760 (882)
                      +.   .|..+..|...++...|..
T Consensus       117 p~d~~s~~~LL~WHEk~~~~~GvG  140 (152)
T KOG3380|consen  117 PSDNSSCVSLLQWHEKLVAKSGVG  140 (152)
T ss_pred             ccccchHHHHHHHHHHHHHhcCCc
Confidence            53   4444555666666555543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.27  E-value=49  Score=35.08  Aligned_cols=42  Identities=10%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782          601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  642 (882)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  642 (882)
                      .+.+||..+.+....-......-...+..-++++++.||.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            467888776543222111111222233445788888887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.47  E-value=5.2  Score=26.55  Aligned_cols=40  Identities=28%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCeeEEEeecCCCCEEEEEE
Q 002782           70 PDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGMAC  110 (882)
Q Consensus        70 pd~~~las~~-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~f  110 (882)
                      |++++|.++. .++.|.++|..+++.+..+.....| ..++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence            6788777665 4789999999999988888763332 34444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=84.26  E-value=99  Score=36.82  Aligned_cols=81  Identities=20%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCC----CccEEEEEeCCCcEEEEECCCCeEEEEe--cC
Q 002782          116 LLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKCVATL--DK  186 (882)
Q Consensus       116 ~lasg~~dg~v~vwd~~~~~~~~~~---~~h~~~V~~l~f~~~~----~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~  186 (882)
                      .++.+-..|.+.-+....+..+..+   ..-+..|.|+++.++.    ...+++.++.|+.+++..+....++..+  ++
T Consensus       551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~  630 (1205)
T KOG1898|consen  551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG  630 (1205)
T ss_pred             EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence            3444445555555544322222222   2345678999998875    2356999999999999999877777665  33


Q ss_pred             cccceEEEEE
Q 002782          187 HFSRVTSMAI  196 (882)
Q Consensus       187 h~~~v~~l~~  196 (882)
                      -..++.++++
T Consensus       631 l~~~~~s~~i  640 (1205)
T KOG1898|consen  631 LSSPPESLCI  640 (1205)
T ss_pred             cCCCccceEE
Confidence            3445555555

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=84.16  E-value=50  Score=33.35  Aligned_cols=201  Identities=15%  Similarity=0.168  Sum_probs=113.0

Q ss_pred             ceEEccCCCEEEEEeC-CeEEEEEcC------CC-ceeeeecC-----CCccEEEEEEcCCCCE------------EEEE
Q 002782           24 PLVVSSDGSFIACACG-ESINIVDLS------NA-SIKSTIEG-----GSDTITALALSPDDKL------------LFSS   78 (882)
Q Consensus        24 ~va~s~dg~~la~~~~-~~I~i~d~~------~~-~~~~~l~~-----~~~~I~~l~~spd~~~------------las~   78 (882)
                      -|+++|.+.+-++..+ +...+||..      .. .++-.+..     .....|.+.|+....+            ++.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            5999998865554444 378999986      11 23344432     1235677777754333            4566


Q ss_pred             eCCCcEEEEECCCCee-----EEEee-cCCCCE-EEEEEcC--CCCEEEEEe-CCCcEEEEECCCCeEEE--EeecC---
Q 002782           79 GHSREIRVWDLSTLKC-----LRSWK-GHDGPA-IGMACHP--SGGLLATAG-ADRKVLVWDVDGGFCTH--YFKGH---  143 (882)
Q Consensus        79 ~~dg~i~iwd~~~~~~-----~~~~~-~h~~~V-~~l~fs~--~~~~lasg~-~dg~v~vwd~~~~~~~~--~~~~h---  143 (882)
                      ++||+|.=|...-+..     ...+. ...+.| ..+++-.  .+.+|..+. ..++|.|+|-.=.....  .+...   
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP  186 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP  186 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence            8899999998532221     11222 112333 3344443  356666554 56889999854322110  01100   


Q ss_pred             --CCc--EE------EEEE---ecCCCccEEEEEeCCCcEEEEECCCCeEEEEe--cCcccceEEEEEcc------CCCE
Q 002782          144 --KGV--VS------SILF---HPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITS------DGST  202 (882)
Q Consensus       144 --~~~--V~------~l~f---~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~h~~~v~~l~~s~------~~~~  202 (882)
                        -.+  |.      -+.|   .++..  -=+.|..-|.|-++|+ .+..++.+  .+.-+..+.|+..|      .|.+
T Consensus       187 agyAPFnIqnig~~lyVtYA~qd~~~~--d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       187 AGYAPFNVQNLGGTLYVTYAQQDADRN--DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCcceEEECCeEEEEEEecCCccc--ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence              000  10      1111   11111  1334445578999996 56666665  34456778888865      5677


Q ss_pred             EEEEeCCCeEEEEecCCceeeeeec
Q 002782          203 LISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       203 l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      |+---.||+|..+|..+++.+-.+.
T Consensus       264 LVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             EEeecCCceeEEecCCCCceeeeec
Confidence            7777789999999998877655543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.16  E-value=14  Score=44.57  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc-------EEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782          415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN-------FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~-------~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  487 (882)
                      +-.+.|..+.+|+++++.....+.+-...|..+..-.-..+       +++..+.--.|.++-+.-.........-... 
T Consensus        93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~-  171 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS-  171 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc-


Q ss_pred             hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC---------------------------CCceeEEEEe-cccCce
Q 002782          488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------------------PDLVSVVTFR-GHKRGI  539 (882)
Q Consensus       488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~---------------------------~~~~~~~~~~-~h~~~v  539 (882)
                      ......+..|+|+....+|+.+.+|-.|   .+|.+                           ++   +..+. .+..+|
T Consensus       172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~~~~~~dpI  245 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSVPGSSKDPI  245 (1311)
T ss_pred             eeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcCCCCCCCcc


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782          540 WSVEFSPVDQVVITASGDKTIKIWSISD  567 (882)
Q Consensus       540 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~  567 (882)
                      ..+.....-+.+.+-+.-|+|.+|++..
T Consensus       246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  246 RQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeEeccccceeeeeccCceEEEEEccC

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.99  E-value=91  Score=37.12  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE----ec---------------ccCceEEEEEcCCCCEEEEe
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF----RG---------------HKRGIWSVEFSPVDQVVITA  554 (882)
Q Consensus       494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~l~~s~~~~~l~s~  554 (882)
                      .+.|.+++...-+.+++....||+|.++|-.+.+.+...    ..               +-.++..++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            456788888888889999999999999998877555443    10               11234457899999888888


Q ss_pred             eCCCcEE
Q 002782          555 SGDKTIK  561 (882)
Q Consensus       555 ~~d~~i~  561 (882)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.98  E-value=85  Score=35.84  Aligned_cols=203  Identities=13%  Similarity=0.131  Sum_probs=109.1

Q ss_pred             ceEEccCCCEEEEEeCC-eEEEEEc-CCCceeeeecC-CCccEEEEEEcCC---CCEEEEE-eCCCcEEEEECCCC----
Q 002782           24 PLVVSSDGSFIACACGE-SINIVDL-SNASIKSTIEG-GSDTITALALSPD---DKLLFSS-GHSREIRVWDLSTL----   92 (882)
Q Consensus        24 ~va~s~dg~~la~~~~~-~I~i~d~-~~~~~~~~l~~-~~~~I~~l~~spd---~~~las~-~~dg~i~iwd~~~~----   92 (882)
                      +..++|+...+-.|-.+ .|.-|=+ .|.+.+....- .+..|+|+..-..   .++.++| .....-++--+..+    
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~  111 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST  111 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence            44667888888887766 4444433 25666655543 3556788877543   2344444 33333333332222    


Q ss_pred             -------e--eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eee-cCCCcEEEEEEecCCC---
Q 002782           93 -------K--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH--YFK-GHKGVVSSILFHPDTD---  157 (882)
Q Consensus        93 -------~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~--~~~-~h~~~V~~l~f~~~~~---  157 (882)
                             +  ....++ -+..|..+.|.++++.+++...+|.|.+||...+....  .+. .+...+.--+|.++..   
T Consensus       112 ~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~  190 (670)
T PF10395_consen  112 EDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN  190 (670)
T ss_pred             cccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence                   1  112222 36789999999999999999999999999993332111  222 2333222224444322   


Q ss_pred             -ccEEEEEeC-C---CcEEEEEC-CCCeEEEEec---CcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782          158 -KSLLFSGSD-D---ATVRVWDL-LAKKCVATLD---KHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       158 -~~~l~sgs~-d---g~I~vwd~-~~~~~~~~l~---~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                       ..++++.+. +   -..+++.+ .+...+..+.   .+........|.- +|. |+.- .++.|.+|++...+...++.
T Consensus       191 ~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~  268 (670)
T PF10395_consen  191 GKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTIS  268 (670)
T ss_pred             CCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEE
Confidence             223333333 2   24667777 1222222222   2222223333332 443 3333 67899999998888777766


Q ss_pred             Cc
Q 002782          228 TY  229 (882)
Q Consensus       228 ~~  229 (882)
                      ..
T Consensus       269 l~  270 (670)
T PF10395_consen  269 LP  270 (670)
T ss_pred             ec
Confidence            55

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=83.40  E-value=59  Score=33.62  Aligned_cols=61  Identities=16%  Similarity=0.407  Sum_probs=45.8

Q ss_pred             ccCCCEEEEEeCCeEEEEEcCC--CceeeeecCCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 002782           28 SSDGSFIACACGESINIVDLSN--ASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLS   90 (882)
Q Consensus        28 s~dg~~la~~~~~~I~i~d~~~--~~~~~~l~~~~~~I~~l~~spd~~~las~~-~dg~i~iwd~~   90 (882)
                      .-++++|+.|+++.+.+.+...  ++..+.+  +...|+++.+.+.-+.|++-+ ....++++++.
T Consensus        10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             ccCCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence            3455799999999999999765  3444444  456899999999888777654 44559999984

Unpublished observations.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.30  E-value=58  Score=36.28  Aligned_cols=142  Identities=21%  Similarity=0.230  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCC---EEEEEEcCCCCEE
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP---AIGMACHPSGGLL  117 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~---V~~l~fs~~~~~l  117 (882)
                      ...++|. +|.++..+.........+..-++|.+++..+  ..+..+|+- |+.+.........   =..+...|+|++|
T Consensus       129 ~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L  204 (477)
T PF05935_consen  129 YTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLL  204 (477)
T ss_dssp             EEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred             eEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEE
Confidence            5777774 5666655543222222267789999887665  788888884 6665554432211   1356788999998


Q ss_pred             EEEeC-------------CCcEEEEECCCCeEEEEee--cCC-------------------------CcEEEEEEecCCC
Q 002782          118 ATAGA-------------DRKVLVWDVDGGFCTHYFK--GHK-------------------------GVVSSILFHPDTD  157 (882)
Q Consensus       118 asg~~-------------dg~v~vwd~~~~~~~~~~~--~h~-------------------------~~V~~l~f~~~~~  157 (882)
                      +.+..             .-.|..+| .+|+.+..+.  .|-                         -.+.++.+.+..+
T Consensus       205 ~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd  283 (477)
T PF05935_consen  205 ILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDD  283 (477)
T ss_dssp             EEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTT
T ss_pred             EEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCC
Confidence            87761             12356666 6776665543  111                         1367888887534


Q ss_pred             ccEEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 002782          158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHF  188 (882)
Q Consensus       158 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~  188 (882)
                       .+++++-.-..|...|..+++....+..|.
T Consensus       284 -~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  284 -SIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             -EEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             -eEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence             345555555578888877777776665543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.17  E-value=31  Score=38.37  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             eEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCcc---EEEEEEcCCCCEEEEEeC-------------CCcEEEEE
Q 002782           25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT---ITALALSPDDKLLFSSGH-------------SREIRVWD   88 (882)
Q Consensus        25 va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~---I~~l~~spd~~~las~~~-------------dg~i~iwd   88 (882)
                      +..-++|.+++.. ...+..+|.. |+.+....-....   =..+..-|+|++|+.+..             .-.|..+|
T Consensus       153 ~~~l~nG~ll~~~-~~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGS-GNRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEE-BTEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEec-CCceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            5677889877644 4788888874 5554433322111   245678899999987771             22467777


Q ss_pred             CCCCeeEEEeec--CC-------------------------CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782           89 LSTLKCLRSWKG--HD-------------------------GPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYF  140 (882)
Q Consensus        89 ~~~~~~~~~~~~--h~-------------------------~~V~~l~fs~-~~~~lasg~~dg~v~vwd~~~~~~~~~~  140 (882)
                       .+|+.+..+..  |-                         ..+.++.+.+ ++.+++|+-.-..|...|..+++....+
T Consensus       231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence             88887777532  10                         2478899999 5556666555568888898888887777


Q ss_pred             ecCCC
Q 002782          141 KGHKG  145 (882)
Q Consensus       141 ~~h~~  145 (882)
                      -.|.+
T Consensus       310 g~~~~  314 (477)
T PF05935_consen  310 GPPGG  314 (477)
T ss_dssp             S-STT
T ss_pred             CCCCC
Confidence            65553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.14  E-value=1.1e+02  Score=36.46  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe----e---------------cCcCCEEEEEEEeCCCEEEEe
Q 002782          536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----E---------------GHTSSVLRASFLTRGAQIVSC  596 (882)
Q Consensus       536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~---------------~h~~~v~~~~~s~~g~~l~s~  596 (882)
                      ...|.+++...-+.+++.+..||+|.++|-.+.+.+...    .               .+...+..++|||.+.-++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            356788888888889999999999999998776554333    1               011234558899999999999


Q ss_pred             ecCCeEE
Q 002782          597 GADGLVK  603 (882)
Q Consensus       597 ~~dg~i~  603 (882)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888766

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.45  E-value=20  Score=43.61  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=23.8

Q ss_pred             ccCCCEEEEEeCCCeEEEEecCCcee
Q 002782          197 TSDGSTLISAGRDKVVNLWDLRDYSC  222 (882)
Q Consensus       197 s~~~~~l~s~~~dg~i~vwd~~~~~~  222 (882)
                      ++++..++++..||.+.+||...+..
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCce
Confidence            78899999999999999999998765

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.40  E-value=33  Score=33.81  Aligned_cols=187  Identities=20%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcC
Q 002782           33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP  112 (882)
Q Consensus        33 ~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~  112 (882)
                      +.+....+.|.++| .|.--...+.-....   +...+....+...+ --.=.+||+.+++....--....-..+-+|-+
T Consensus         2 h~~~~~~~~v~~~d-~t~~g~s~~~~~~~~---c~~~~~~~~~~~d~-~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~   76 (243)
T PF07250_consen    2 HMALLHNNKVIMFD-RTNFGPSNISLPDGR---CRDNPEDNALKFDG-PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLP   76 (243)
T ss_pred             eEeEccCCEEEEEe-CCCcccccccCCCCc---cccCccccccccCc-eEEEEEEecCCCcEEeccCCCCCcccCcCCCC


Q ss_pred             CCCEEEEEe---CCCcEEEEECCCCeEEEEeecCCCcEEEEEE------ecCCCccEEEEEeCCCcEEEEEC-CCCeEEE
Q 002782          113 SGGLLATAG---ADRKVLVWDVDGGFCTHYFKGHKGVVSSILF------HPDTDKSLLFSGSDDATVRVWDL-LAKKCVA  182 (882)
Q Consensus       113 ~~~~lasg~---~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f------~~~~~~~~l~sgs~dg~I~vwd~-~~~~~~~  182 (882)
                      ||++|.+|+   ....+++++..+................=.|      .|||+ .+++.|....+.-+|.- .......
T Consensus        77 dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~  155 (243)
T PF07250_consen   77 DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPV  155 (243)
T ss_pred             CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCC-EEEEeCcCCCcccccCCccCCCCce


Q ss_pred             Ee--------cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782          183 TL--------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP  227 (882)
Q Consensus       183 ~l--------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  227 (882)
                      .+        .....----+...|+|+.++.+..+.  .+||..+.+.++.+|
T Consensus       156 ~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  156 TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             eeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=82.08  E-value=95  Score=35.03  Aligned_cols=217  Identities=16%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             ccCCceEEccCCCEEEEEe-CCeEEEEEcCCC--------cee-eeecCCCccEEEEEEcC-----CCCEEEEEe--CC-
Q 002782           20 YGGGPLVVSSDGSFIACAC-GESINIVDLSNA--------SIK-STIEGGSDTITALALSP-----DDKLLFSSG--HS-   81 (882)
Q Consensus        20 y~g~~va~s~dg~~la~~~-~~~I~i~d~~~~--------~~~-~~l~~~~~~I~~l~~sp-----d~~~las~~--~d-   81 (882)
                      ..|..+++.|.|+.++.+. .+.+.|+-++..        ... ..+ .....|..++|-.     +...+|.-.  .. 
T Consensus        44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~  122 (504)
T PF10433_consen   44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR  122 (504)
T ss_dssp             TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred             cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence            4455799999999988877 458888888760        111 111 1245678888875     334555432  22 


Q ss_pred             -CcEEEEECCCCeeEEE----------e-ecCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEE-CCC--C-eEEEEeec--
Q 002782           82 -REIRVWDLSTLKCLRS----------W-KGHDGPAIGMACH-PSGGLLATAGADRKVLVWD-VDG--G-FCTHYFKG--  142 (882)
Q Consensus        82 -g~i~iwd~~~~~~~~~----------~-~~h~~~V~~l~fs-~~~~~lasg~~dg~v~vwd-~~~--~-~~~~~~~~--  142 (882)
                       ..+..+++.....+..          + ..+..+..-+..- |.|-.|+++  ++ +.++. ...  + .....+..  
T Consensus       123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~--~~-~i~y~~~~~~~~~~~~~~~~~~~  199 (504)
T PF10433_consen  123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGG--EN-IIIYKNHLIGSGDYSFLSIPSPP  199 (504)
T ss_dssp             EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEE--SS-EEEEEE------TTEEEEE--H-
T ss_pred             cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEEC--CE-EEEEecccccccccccccccCCc
Confidence             2344444332221111          1 1122332223322 234444443  23 33343 211  1 11222221  


Q ss_pred             --CCCcEEEEEE-----ecCCCccEEEEEeCCCcEEEEECCCCeE--EEEecCc-ccceEEEEEccCC-CEEEEEeC--C
Q 002782          143 --HKGVVSSILF-----HPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLDKH-FSRVTSMAITSDG-STLISAGR--D  209 (882)
Q Consensus       143 --h~~~V~~l~f-----~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h-~~~v~~l~~s~~~-~~l~s~~~--d  209 (882)
                        ...-+.+.++     ....+...++.+..+|.+....+.....  ....-+. .....++++..+| .+|+.|+.  |
T Consensus       200 ~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gd  279 (504)
T PF10433_consen  200 SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGD  279 (504)
T ss_dssp             HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-
T ss_pred             cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCC
Confidence              1233343332     1233445588889999998887755331  1111122 4455677776665 46666664  5


Q ss_pred             CeEEEEecCCceeeeeecCcceeeEEEecCC
Q 002782          210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP  240 (882)
Q Consensus       210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  240 (882)
                      +.+..|.....+.+..++.-.++..++..+.
T Consensus       280 s~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~  310 (504)
T PF10433_consen  280 SQLLQISLSNLEVLDSLPNWGPIVDFCVVDS  310 (504)
T ss_dssp             EEEEEEESESEEEEEEE----SEEEEEEE-T
T ss_pred             cEEEEEeCCCcEEEEeccCcCCccceEEecc
Confidence            6677777677778888888888888887654

...

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.88  E-value=71  Score=33.45  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=52.7

Q ss_pred             CCCEEEEEeC------CeEEEEEcCCCce---eeeec---CCCccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 002782           30 DGSFIACACG------ESINIVDLSNASI---KSTIE---GGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL   92 (882)
Q Consensus        30 dg~~la~~~~------~~I~i~d~~~~~~---~~~l~---~~~~~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~   92 (882)
                      ++++++.|+.      ..+..+|+.+.+-   ...+.   .......+ +. -++++.+.|+.     ...+..||..+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~-~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA-CY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE-EE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            4555555542      2577788776653   12221   11111122 22 24666666664     246888888765


Q ss_pred             eeEE--EeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeE
Q 002782           93 KCLR--SWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFC  136 (882)
Q Consensus        93 ~~~~--~~~~h~~~V~~l~fs~~~~~lasg~~dg----~v~vwd~~~~~~  136 (882)
                      +-..  .+.. .......+...+++..+.|+.++    .+.+||+.+.+-
T Consensus       150 ~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4322  2221 11222233344677777777653    356888887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.70  E-value=14  Score=42.23  Aligned_cols=71  Identities=23%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CCCcEEEEEcCCCcEEEEeCCC----ceeEEEE-ec-c--------------------cCceEEEEEcC----CCCEEEE
Q 002782          504 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF-RG-H--------------------KRGIWSVEFSP----VDQVVIT  553 (882)
Q Consensus       504 ~~~~~la~~s~dg~i~iwd~~~----~~~~~~~-~~-h--------------------~~~v~~l~~s~----~~~~l~s  553 (882)
                      ++...++++..||.+.......    +...... .. +                    ...+.++++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888888899888877654    2222111 11 1                    12355666666    7789999


Q ss_pred             eeCCCcEEEEecCCCceeeEe
Q 002782          554 ASGDKTIKIWSISDGSCLKTF  574 (882)
Q Consensus       554 ~~~d~~i~iwd~~~~~~~~~~  574 (882)
                      .+.|+++|+||+.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	882
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-51
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-21
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-26
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-22
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-24
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-21
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-24
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-21
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-22
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-20
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-11
2h9l_A	329	Wdr5delta23 Length = 329		2e-22
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-22
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-22
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-22
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-22
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-22
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-22
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-22
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-22
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-22
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-22
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-22
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-22
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-22
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-21
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-20
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-20
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-17
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-17
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-17
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-14
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-16
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-16
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-16
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-16
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-15
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-15
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-15
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-15
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-15
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-14
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-11
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-13
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-13
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-13
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-13
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-11
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-12
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-12
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-12
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-11
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-11
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		9e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-08
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-07
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		9e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		7e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-04
1l0q_A	391	Tandem Yvtn Beta-Propeller And Pkd Domains From An		3e-05
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		1e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		3e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		7e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  199 bits (507), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 168/628 (26%), Positives = 279/628 (44%), Gaps = 76/628 (12%)
Query: 25  LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84
           +  S DG  IA A  +    +   N  +  T+ G S ++  +A SPD + + S+   + +
Sbjct: 22  VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 85  RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
           ++W+ +  + L++  GH     G+A  P G  +A+A  D+ V +W+ +G        GH 
Sbjct: 82  KLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGHS 139
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204
             V  + F PD     + S SDD TV++W+   +  + TL  H S V  +A + DG T+ 
Sbjct: 140 SSVWGVAFSPD--GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 196
Query: 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264
           SA  DK V LW+      +        V  V   P G            QTI        
Sbjct: 197 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG------------QTI-------- 236
Query: 265 IHFITVGERGIVRMWNADSACLYE---QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321
               +  +   V++WN +   L       SS   ++F               P  Q +  
Sbjct: 237 ---ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR--------------PDGQTIAS 279
Query: 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381
            + D+      TV++  +  +L+  + L G++  +  + F   + Q +A A++ + V+++
Sbjct: 280 ASDDK------TVKLWNRNGQLL--QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW 330
Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
           + +       L GHS  V  +   A S     I + S D +V+LW+   +    + TGH 
Sbjct: 331 NRNGQHL-QTLTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHS 385
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
            +V  VAFS   Q  + S S D T+K+W+ +G           +    +  H   +  +A
Sbjct: 386 SSVRGVAFSPDGQT-IASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVA 433
Query: 502 VAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560
            +P+D  + + S D+T  +W R   L+  +T  GH   +  V FSP  Q + +AS DKT+
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 620
           K+W+  +G  L+T  GH+SSV   +F   G  I S   D  VKLW  R G+ + T   H 
Sbjct: 492 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 549
Query: 621 DKIWALAVGKKTEMFATGGSDALVNLWH 648
             +W +A     +  A+  SD  V LW+
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIW 540
           M +K +  + AH   +  +A +P+   + + S D+T  +W R   L+  +T  GH   +W
Sbjct: 4   MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 61
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
            V FSP  Q + +AS DKT+K+W+  +G  L+T  GH+SSV   +F   G  I S   D 
Sbjct: 62  GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            VKLW  R G+ + T   H   +W +A     +  A+   D  V LW+
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  115 bits (289), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421
           L  ++Q +        ++++D +++ C  +L GH+  VLCL        + +I+TGS D+
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-----QYDERVIITGSSDS 193
Query: 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
           +VR+WD  +   +     H  AV  + F+  +   +V+ S D +I VW       D   P
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVW-------DMASP 243
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
            ++  + V+  H   +N   V  +D  + + S DRT  VW       V T  GHKRGI  
Sbjct: 244 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
           +++   D++V++ S D TI++W I  G+CL+  EGH   V    F  +  +IVS   DG 
Sbjct: 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGK 357
Query: 602 VKLW 605
           +K+W
Sbjct: 358 IKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 24/237 (10%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
           IV+G +DN++++WD  +  C  + TGH G+V  + + +++   +++GSSD T++VW  + 
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDVN- 201
Query: 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533
            + +    +    +AV          L +  N+ ++ T S+DR+  VW +     +   R
Sbjct: 202 -TGEMLNTLIHHCEAV----------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 534 ---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
              GH+  +  V+F   D+ +++ASGD+TIK+W+ S    ++T  GH   +  A    R 
Sbjct: 251 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD 306
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
             +VS  +D  ++LW +  G C+   + HE+ +  +    K     +G  D  + +W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 145/639 (22%), Positives = 242/639 (37%), Gaps = 82/639 (12%)
Query: 12   CEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD 71
            CEP   + Y    L    +G        E IN   + N S +  +   +D +     S D
Sbjct: 576  CEPETSEVYRQAKLQAKQEGD-TGRLYLEWINKKTIKNLS-RLVVRPHTDAVYHACFSQD 633
Query: 72   DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
             + + S G  + ++V+   T + L   K H+   +  A       +AT  AD+KV +WD 
Sbjct: 634  GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 132  DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191
              G   H +  H   V+   F   ++  LL +GS+D  +++WDL  K+C  T+  H + V
Sbjct: 694  ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 192  TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EMVEAVCAIPPG 241
                 + D   L S   D  + LWD+R  + + ++             E VE +      
Sbjct: 754  NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 813
Query: 242  SA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFITVG-ERGIVRM 278
            SA               FD   S         +  TI+    S   H   +   +  V +
Sbjct: 814  SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 279  WNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTADQQLLLYTTV 334
            WN DS      K +D           RG  +        P     L  + DQ + ++ T 
Sbjct: 874  WNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Query: 335  EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
            +V  K   ++L +         +D+ F   E   LAV  NI  +Q+    +    Y+   
Sbjct: 920  KVC-KNSAIVLKQE--------IDVVFQENETMVLAV-DNIRGLQLIAGKTGQIDYLPEA 969
Query: 395  HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
                   +  C LS     +  G +D ++++ +  +      G GH  AV  + F+   +
Sbjct: 970  Q------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 455  NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
              L+S S D  I+VW++                  + AH + +    +   DS + + S 
Sbjct: 1024 T-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL-QDSRLLSWSF 1070
Query: 515  DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
            D T  VW +        F  H+  + S   S       + S DKT KIWS    S L   
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 575  EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
            +GH   V  ++F   G  + +   +G +++W V  G+ +
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/574 (22%), Positives = 227/574 (39%), Gaps = 109/574 (18%)
Query: 105  AIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
            A+  AC    G  +A+ GAD+ + V+  + G      K H+  V    F   +D S + +
Sbjct: 624  AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIAT 681
Query: 164  GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYS 221
             S D  V++WD    K V T D+H  +V     T+  + L+ A    D  + LWDL    
Sbjct: 682  CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 222  CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
            C+ T+  +      C   P    D  L+S                       G +R+W+ 
Sbjct: 742  CRNTMFGHTNSVNHCRFSPD---DELLAS-------------------CSADGTLRLWDV 779
Query: 282  DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
             SA   E+KS +V         KR F ++                        E P + +
Sbjct: 780  RSA--NERKSINV---------KRFFLSS------------------------EDPPEDV 804
Query: 342  ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVL 400
            E+I+               +  + ++ +  A N  +V ++D+ +S   + +  GH   + 
Sbjct: 805  EVIVKC-----------CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI- 850
Query: 401  CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
                C  S    L V       V LW+ +SR  V    GH+  V  V FS    +FL + 
Sbjct: 851  --QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 907
Query: 461  SSDHTIKVWS---------------FDGLSDDAEQPM----NLKAKAVVAAHGKDINSL- 500
            S D TI+VW                 D +  + E  +    N++   ++A     I+ L 
Sbjct: 908  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 967
Query: 501  -------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
                    ++P+   V  G +D    +  LP+     +  GHK+ +  ++F+   + +I+
Sbjct: 968  EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 554  ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
            +S D  I++W+   G  +   + H  +V +   L + ++++S   DG VK+W V TG   
Sbjct: 1028 SSEDSVIQVWNWQTGDYV-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 614  ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
              +  H+  + + A+      F++  +D    +W
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 117/311 (37%), Gaps = 30/311 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
           +  H + VLC   CA SS    I T S D  V++WDS +   V     H   V    F+ 
Sbjct: 660 IKAHEDEVLC---CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716
Query: 452 KLQNFLV-SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
           K  + L+ +GS+D  +K+W  +            + +  +  H   +N    +P+D L+ 
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLN----------QKECRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------TASGDKTIK--- 561
           + S D T  +W +       +    KR   S E  P D  VI      +A GDK I    
Sbjct: 767 SCSADGTLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 825
Query: 562 ----IWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
               ++ I + G   +   GH S++    F       V   +   V+LW + +   +A  
Sbjct: 826 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 885
Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAV 676
             H   +  +        F T   D  + +W                  V+  QE E  V
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV-FQENETMV 944
Query: 677 LDADYTKAIQV 687
           L  D  + +Q+
Sbjct: 945 LAVDNIRGLQL 955

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
           HT +V  A F   G +I SCGAD  ++++   TGE +     HED++   A        A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 637 TGGSDALVNLWHDST 651
           T  +D  V +W  +T
Sbjct: 681 TCSADKKVKIWDSAT 695

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 145/639 (22%), Positives = 242/639 (37%), Gaps = 82/639 (12%)
Query: 12   CEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD 71
            CEP   + Y    L    +G        E IN   + N S +  +   +D +     S D
Sbjct: 569  CEPETSEVYRQAKLQAKQEGD-TGRLYLEWINKKTIKNLS-RLVVRPHTDAVYHACFSQD 626
Query: 72   DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
             + + S G  + ++V+   T + L   K H+   +  A       +AT  AD+KV +WD 
Sbjct: 627  GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 132  DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191
              G   H +  H   V+   F   ++  LL +GS+D  +++WDL  K+C  T+  H + V
Sbjct: 687  ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 192  TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EMVEAVCAIPPG 241
                 + D   L S   D  + LWD+R  + + ++             E VE +      
Sbjct: 747  NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806
Query: 242  SA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFITVG-ERGIVRM 278
            SA               FD   S         +  TI+    S   H   +   +  V +
Sbjct: 807  SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 279  WNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTADQQLLLYTTV 334
            WN DS      K +D           RG  +        P     L  + DQ + ++ T 
Sbjct: 867  WNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Query: 335  EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
            +V  K   ++L +         +D+ F   E   LAV  NI  +Q+    +    Y+   
Sbjct: 913  KVC-KNSAIVLKQE--------IDVVFQENETMVLAV-DNIRGLQLIAGKTGQIDYLPEA 962
Query: 395  HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
                   +  C LS     +  G +D ++++ +  +      G GH  AV  + F+   +
Sbjct: 963  Q------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 455  NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
              L+S S D  I+VW++                  + AH + +    +   DS + + S 
Sbjct: 1017 T-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL-QDSRLLSWSF 1063
Query: 515  DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
            D T  VW +        F  H+  + S   S       + S DKT KIWS    S L   
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 575  EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
            +GH   V  ++F   G  + +   +G +++W V  G+ +
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/574 (22%), Positives = 227/574 (39%), Gaps = 109/574 (18%)
Query: 105  AIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
            A+  AC    G  +A+ GAD+ + V+  + G      K H+  V    F   +D S + +
Sbjct: 617  AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIAT 674
Query: 164  GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYS 221
             S D  V++WD    K V T D+H  +V     T+  + L+ A    D  + LWDL    
Sbjct: 675  CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 222  CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
            C+ T+  +      C   P    D  L+S                       G +R+W+ 
Sbjct: 735  CRNTMFGHTNSVNHCRFSPD---DELLAS-------------------CSADGTLRLWDV 772
Query: 282  DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
             SA   E+KS +V         KR F ++                        E P + +
Sbjct: 773  RSA--NERKSINV---------KRFFLSS------------------------EDPPEDV 797
Query: 342  ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVL 400
            E+I+               +  + ++ +  A N  +V ++D+ +S   + +  GH   + 
Sbjct: 798  EVIVKC-----------CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI- 843
Query: 401  CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
                C  S    L V       V LW+ +SR  V    GH+  V  V FS    +FL + 
Sbjct: 844  --QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 900
Query: 461  SSDHTIKVWS---------------FDGLSDDAEQPM----NLKAKAVVAAHGKDINSL- 500
            S D TI+VW                 D +  + E  +    N++   ++A     I+ L 
Sbjct: 901  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960
Query: 501  -------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
                    ++P+   V  G +D    +  LP+     +  GHK+ +  ++F+   + +I+
Sbjct: 961  EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 554  ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
            +S D  I++W+   G  +   + H  +V +   L + ++++S   DG VK+W V TG   
Sbjct: 1021 SSEDSVIQVWNWQTGDYV-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 614  ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
              +  H+  + + A+      F++  +D    +W
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 117/311 (37%), Gaps = 30/311 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
           +  H + VLC   CA SS    I T S D  V++WDS +   V     H   V    F+ 
Sbjct: 653 IKAHEDEVLC---CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709
Query: 452 KLQNFLV-SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
           K  + L+ +GS+D  +K+W  +            + +  +  H   +N    +P+D L+ 
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLN----------QKECRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------TASGDKTIK--- 561
           + S D T  +W +       +    KR   S E  P D  VI      +A GDK I    
Sbjct: 760 SCSADGTLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818
Query: 562 ----IWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
               ++ I + G   +   GH S++    F       V   +   V+LW + +   +A  
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878
Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAV 676
             H   +  +        F T   D  + +W                  V+  QE E  V
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV-FQENETMV 937
Query: 677 LDADYTKAIQV 687
           L  D  + +Q+
Sbjct: 938 LAVDNIRGLQL 948

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
           HT +V  A F   G +I SCGAD  ++++   TGE +     HED++   A        A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 637 TGGSDALVNLWHDST 651
           T  +D  V +W  +T
Sbjct: 674 TCSADKKVKIWDSAT 688

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 34  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 36  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 19/272 (6%)
Query: 17  QQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF 76
           ++F  GGPL    D                +     K  + G    +T +   P   ++ 
Sbjct: 77  EEFTSGGPLGQKRDPKEW------------IPRPPEKYALSGHRSPVTRVIFHPVFSVMV 124
Query: 77  SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136
           S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C
Sbjct: 125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184
Query: 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
                GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +  
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256
             DG+ + S   D+ V +W +    CK  +  +  V    +  P S++ S   +   +T 
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 257 KKKRRSLEIHFITVGER-GIVRMWNADSA-CL 286
           K  +      F+  G R   ++MW+  +  CL
Sbjct: 303 KSGKPGP---FLLSGSRDKTIKMWDVSTGMCL 331

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 34/299 (11%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
           +  A+    ++V+D  +      L GH++ V   D     SGK+L  + S D +++LWD 
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLL-ASCSADMTIKLWDF 179
Query: 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
           +   C+    GH   V +V+      + +VS S D TIK+W       + +    +K   
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW-------EVQTGYCVK--- 228
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
               H + +  +    + +L+ + S D+T  VW +         R H+  +  + ++P  
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 549 Q--------------------VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588
                                 +++ S DKTIK+W +S G CL T  GH + V    F +
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
            G  I+SC  D  +++W  +   C+ T + HE  + +L   K      TG  D  V +W
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
           +GH   V  V F     + +VS S D TIKVW ++  + D E+ +          H   +
Sbjct: 105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYE--TGDFERTLK--------GHTDSV 153
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
             ++   +  L+ + S D T  +W       + T  GH   + SV   P    +++AS D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
           KTIK+W +  G C+KTF GH   V        G  I SC  D  V++W V T EC A   
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 618 KHEDKI----WA----------------LAVGKKTEMFATGGSDALVNLWHDST 651
           +H   +    WA                   GK      +G  D  + +W  ST
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
           N   K  +A H K ++S+  +PN   +   S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
           K    L   L G+ + +  +KF     ++LA ++  + ++++          ++GH    
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
           L +   A SS   L+V+ S D ++++WD  S  C+    GH   V    F+ +  N +VS
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
           GS D ++++W       D +  M LK    + AH   ++++    + SL+ + S D    
Sbjct: 128 GSFDESVRIW-------DVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
           +W       + T         S V+FSP  + ++ A+ D T+K+W  S G CLKT+ GH 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
           +    + A+F +T G  IVS   D +V +W ++T E +     H D + + A      + 
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 ATGG--SDALVNLW 647
           A+    +D  + LW
Sbjct: 298 ASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
            +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608
            ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V++W V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           TG C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 391 VLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
           VL GH + ++ CL  C        IV+GS DN++++W + +  C+    GH G V +   
Sbjct: 113 VLKGHDDHVITCLQFCGNR-----IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--- 164
Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509
           S+   N ++SGS+D T+KVW+ +              + +   +G       +  ++  V
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAE------------TGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569
            +GS+D T  VW +     +    GH   +  V++    + V++ + D  +K+W     +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETET 270
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 629
           CL T +GHT+ V    F   G  +VS   D  +++W V TG CI T   H+     + + 
Sbjct: 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL- 327
Query: 630 KKTEMFATGGSDALVNLW 647
            K  +  +G +D+ V +W
Sbjct: 328 -KDNILVSGNADSTVKIW 344

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
           LK+  V+  H   + +      + +V +GS D T  VW       + T  GH  G+WS +
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603
               D ++I+ S D+T+K+W+   G C+ T  GHTS+V R   L    ++VS   D  ++
Sbjct: 167 MR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCMHLHE-KRVVSGSRDATLR 222
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
           +W + TG+C+     H   +    V        +G  D +V +W   T
Sbjct: 223 VWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPET 268

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 480
           +WD +  CC  V  GH   V  +   + K   ++V+GS D+T+ VW       + D  E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 481 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530
              P+       N     V+  H   + +  V+ + ++V +GS D T  VW +  +  + 
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 588
              GH   I+S  +    +  I+AS D TI+IW + +G  + T +GHT+ V  LR S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--- 361
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
               +VS  ADG ++ W         +Y  H   + A+     ++     GS+   N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 28/300 (9%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 480
           +WD +  CC  V  GH   V  +   + K   ++V+GS D+T+ VW       + D  E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 481 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530
              P+       N     V+  H   + +  V+ + ++V +GS D T  VW +     + 
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 588
              GH   I+S  +    +  I+AS D TI+IW + +G    T +GHT+ V  LR S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--- 361
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
               +VS  ADG ++ W         +Y  H   + A+     ++     GS+   N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 75/257 (29%)
Query: 25  LVVSSDGSF-IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
           + +S++G+F ++ +   S+ + +L N   +    G +  + ++A SPD++ + S G    
Sbjct: 73  VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 84  IRVWDLST--------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
           +RVW++                + C+R     D P I            + G D  V VW
Sbjct: 133 LRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI-----------VSGGWDNLVKVW 181
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------- 179
           D+  G      KGH   V+S+   PD   SL  S   D   R+WDL   +          
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPD--GSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 180 -------------CVAT------------------------LDKHFSRVTSMAITSDGST 202
                        C AT                          K      S+A ++DGST
Sbjct: 240 INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGST 299
Query: 203 LISAGRDKVVNLWDLRD 219
           L S   D V+ +W + +
Sbjct: 300 LYSGYTDNVIRVWGVSE 316

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----SRCCVGVG----TGHMG 442
           L GH   V  L           +V+ S+D ++  W        S C  G+      GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502
            V  VA S    NF VS S DH++++W+            N + +     H KD+ S+A 
Sbjct: 69  FVSDVALSNN-GNFAVSASWDHSLRLWNL----------QNGQCQYKFLGHTKDVLSVAF 117
Query: 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSP-VDQVVITASG-DKT 559
           +P++  + +G +D    VW +         RG H   +  V FSP +D  VI + G D  
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
           +K+W ++ G  +   +GHT+ V   +    G+   S   DG+ +LW +  GE ++
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 438 TGHMGAVGAVAFSKKLQNF--LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495
           TGH G V ++A  +  +    +VS S D T+  W  +     +E    L  + +   H  
Sbjct: 10  TGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL-EGHSA 68
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
            ++ +A++ N +   + S D +  +W L +      F GH + + SV FSP ++ +++  
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 556 GDKTIKIWSISDGSCLKTFE--GHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
            D  +++W++  G C+ T     HT   S +R S       IVS G D LVK+W + TG 
Sbjct: 129 RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
            +     H + + ++ V     + A+   D +  LW
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 28  SSDGSFIACACGESINIVDLSNASIKSTIEGGSDT------------------ITALALS 69
           S+DG ++A  C ++  +  +S+ S+ + +   S                    I ++  S
Sbjct: 73  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 70  PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
           PD K L +    R IR+WD+   K +   +GH+     +   PSG  L +   DR V +W
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--- 186
           D+  G C+       G V+++   P  D   + +GS D  VRVWD      V  LD    
Sbjct: 193 DLRTGQCSLTLSIEDG-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 187 ----HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK 223
               H   V S+  T DG +++S   D+ V LW+L++ + K
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
           C    GK L  TG++D  +R+WD E+R  V +  GH   + ++ +     + LVSGS D 
Sbjct: 130 CFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDR 187
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVW-- 521
           T+++W            +     ++  +    + ++AV+P D   +  GS DR   VW  
Sbjct: 188 TVRIWD-----------LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 522 -------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------- 567
                  RL       T  GHK  ++SV F+   Q V++ S D+++K+W++ +       
Sbjct: 237 ETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 568 -----GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
                G+C  T+ GH   VL  +       I+S   D  V  W  ++G  +     H + 
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 623 IWALAV------GKKTEMFATGGSDALVNLW 647
           + ++AV      G +  +FATG  D    +W
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 56  IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
           + G S  +  + LS D +   S     E+R+WDL+     R + GH    + +A      
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 116 LLATAGADRKVLVWDVDGGFCTHYF----KGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
            + +A  DR + +W+  G  C +      +GH+  VS + F P+T +  + S S D TV+
Sbjct: 486 QIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM 231
           VW+L   K  +TL  H   V+++A++ DGS   S G+D VV LWDL +     ++    +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 232 VEAVCAIP 239
           + A+C  P
Sbjct: 605 IHALCFSP 612

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCVGVG----TGHMGAVGA 446
           +  H+++V  + T   ++   +IV+ S+D S+ LW  ++     GV     TGH   V  
Sbjct: 378 MRAHTDMVTAIATPIDNAD--IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
           V  S   Q F +SGS D  +++W              +  +  V  H KD+ S+A + ++
Sbjct: 436 VVLSSDGQ-FALSGSWDGELRLWDL---------AAGVSTRRFVG-HTKDVLSVAFSLDN 484
Query: 507 SLVCTGSQDRTACVWR-LPDLVSVVT--FRGHKRGIWSVEFSP--VDQVVITASGDKTIK 561
             + + S+DRT  +W  L +    ++    GH+  +  V FSP  +   +++AS DKT+K
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
           +W++S+     T  GHT  V   +    G+   S G DG+V LW +  G+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G    H   V A+A      + +VS S D +I +W      DD    +   A+  +  H 
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGV---AQRRLTGHS 430
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +  + ++ +     +GS D    +W L   VS   F GH + + SV FS  ++ +++A
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 555 SGDKTIKIWSISDGSCLKTF----EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 608
           S D+TIK+W+ + G C  T     EGH    S +R S  T    IVS   D  VK+W + 
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
             +  +T   H   +  +AV     + A+GG D +V LW
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
           TF      +  ++F P +  V+T      ++IW+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 7/200 (3%)
Query: 50  ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109
           A+ K ++   ++ ++A + +  D  + ++       +WD+ + + L+S+ GH    + + 
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203
Query: 110 CHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
             PS  G    + G D+K +VWD+  G C   F+ H+  V+S+ ++P  D     SGSDD
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDD 261
Query: 168 ATVRVWDLLAKKCVATLDKH--FSRVTSMAITSDGSTLISAGRDKVVNLWD-LRDYSCKL 224
           AT R++DL A + VA   K       +S+  +  G  L +   D  +N+WD L+     +
Sbjct: 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 225 TVPTYEMVEAVCAIPPGSAF 244
                  V  +   P G+AF
Sbjct: 322 LFGHENRVSTLRVSPDGTAF 341

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 12/276 (4%)
Query: 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435
           E+V+      M     L GH   VLC+D C     K  IV+ S+D  V +WDS +     
Sbjct: 44  ERVEALGQFVMKTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEH 100
Query: 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495
             T     V A A++      +  G  D+   V+    L+ D  + M  K K+V A H  
Sbjct: 101 AVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYP---LTFDKNENMAAKKKSV-AMHTN 155
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVIT 553
            +++ +   +D  + T S D T  +W +     + +F GH   +  ++ +P +     ++
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
              DK   +W +  G C++ FE H S V    +   G    S   D   +L+ +R    +
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 614 ATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 647
           A Y K      A +V       +   G +D  +N+W
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 5   GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 59
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 60  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477
           S+D +VRLW  + +    V     G + +V +  + +  L+ G  D  I        +  
Sbjct: 36  SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTXIN--GVPLFATS 92
Query: 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537
            E P+       +  H  ++ SL+    D +V +GS D+TA VW+   LV     + H  
Sbjct: 93  GEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLV--YNLQAHNA 143
Query: 538 GIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
            +W    V FS  +   +TAS DKTIK+W   +   +KTF G  + V+R   +      +
Sbjct: 144 SVWDAKVVSFS--ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           SC  DGL+KL    TG+ + TY+ HE  ++ + +    ++ +  G D  V +W
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC-GEDRTVRIW 251

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487
           +E     G   GH G V  +A + +  + ++S S D TI +W    L+ D E    +  +
Sbjct: 25  TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQR 80
Query: 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547
           A+   H   ++ + ++ +     +GS D T  +W L    +   F GH + + SV FS  
Sbjct: 81  AL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 548 DQVVITASGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVK 603
           ++ +++ S DKTIK+W+ + G C  T   E H+   S +R S  +    IVSCG D LVK
Sbjct: 140 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           +W +   +    +  H   +  + V     + A+GG D    LW
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487
           +E     G   GH G V  +A + +  + ++S S D TI +W    L+ D E    +  +
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQR 57
Query: 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547
           A+   H   ++ + ++ +     +GS D T  +W L    +   F GH + + SV FS  
Sbjct: 58  AL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 548 DQVVITASGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVK 603
           ++ +++ S DKTIK+W+ + G C  T   E H+   S +R S  +    IVSCG D LVK
Sbjct: 117 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           +W +   +    +  H   +  + V     + A+GG D    LW
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+       +I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D  VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 16/263 (6%)
Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 444
           +   + L GH   V+ +D   +S    +  + S D  +RLWD E+ +    +  G + A 
Sbjct: 70  LDLQWSLEGHQLGVVSVD---ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504
             +AFS   Q +L +G+  H  KV  F   S   E  ++ +        GK I S+A +P
Sbjct: 127 -TLAFSPDSQ-YLATGT--HVGKVNIFGVESGKKEYSLDTR--------GKFILSIAYSP 174
Query: 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
           +   + +G+ D    ++ +     + T  GH   I S+ FSP  Q+++TAS D  IKI+ 
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624
           +   +   T  GH S VL  +F       VS  +D  VK+W V T  C+ T+  H+D++W
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Query: 625 ALAVGKKTEMFATGGSDALVNLW 647
            +          + G D  ++++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 107/276 (38%), Gaps = 43/276 (15%)
Query: 367 QYLAVATNIEQVQVY--DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
            YLA A+      ++  +     C   L GH   V    + A +    L+ T S+D SV 
Sbjct: 74  NYLASASFDATTCIWKKNQDDFECVTTLEGHENEV---KSVAWAPSGNLLATCSRDKSVW 130
Query: 425 LWD---SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
           +W+    +   CV V   H   V  V +    Q  L S S D T+K++         E+ 
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYR--------EEE 181
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------PDL 526
            +    A +  H   + SLA  P+   + + S DRT  +WR                P  
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241
Query: 527 VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TF-------EG 576
             + T  G H R I+ + +  +   + TA GD  I+++     S  +  TF       + 
Sbjct: 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301
Query: 577 HTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGE 611
           H+  V   ++  +   ++ SC  DG V  W  +  E
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ 514
            L S   D  I++W  +G S           K+V++  H + +  +A +P  + + + S 
Sbjct: 30  LLASCGGDRRIRIWGTEGDS--------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 515 DRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---S 569
           D T C+W+    D   V T  GH+  + SV ++P   ++ T S DK++ +W + +     
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWALA 627
           C+     HT  V    +      + S   D  VKL+     +  C AT + HE  +W+LA
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 628 VGKKTEMFATGGSDALVNLW 647
                +  A+   D  V +W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTF-EGHTSSVLRASFLTRGAQIVSC 596
           W + ++P   ++ +  GD+ I+IW     S  C     EGH  +V + ++   G  + S 
Sbjct: 20  WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 597 GADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
             D    +W       EC+ T + HE+++ ++A      + AT   D  V +W
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 435 GVGTGHMGAVGAV--AFSKKLQN---FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489
           G+  GH   V ++   FS+K       L+SGS D T+ +W      ++      +  KA+
Sbjct: 15  GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKAL 72
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549
              H   ++ LA++  +    + S D+T  +W L    +   F GH+  ++SV FSP ++
Sbjct: 73  TG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 550 VVITASGDKTIKIWSISDGSCLKTF---EGHTS--SVLRASFLTRGAQIV--------SC 596
            +++A  ++ IK+W+I  G C  +    E H+   S +R S + + A  V        S 
Sbjct: 132 QILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           G DG +K+W     +   T+  HE  +  L++    +  ATGG D  + +W
Sbjct: 191 GWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31  GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           G+++AC   ++I +I +L     N  +   + G +  ++      D++++ SSG +    
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
           +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+ 
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
            +++I F P+ +     +GSDDAT R++DL A + + T   D     +TS++ +  G  L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
           ++   D   N+WD
Sbjct: 286 LAGYDDFNCNVWD 298

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31  GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           G+++AC   ++I +I +L     N  +   + G +  ++      D++++ SSG +    
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
           +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+ 
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
            +++I F P+ +     +GSDDAT R++DL A + + T   D     +TS++ +  G  L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
           ++   D   N+WD
Sbjct: 286 LAGYDDFNCNVWD 298

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31  GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           G+++AC   ++I +I +L     N  +   + G +  ++      D++++ SSG +    
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
           +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+ 
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
            +++I F P+ +     +GSDDAT R++DL A + + T   D     +TS++ +  G  L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
           ++   D   N+WD
Sbjct: 286 LAGYDDFNCNVWD 298

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31  GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           G+++AC   ++I +I +L     N  +   + G +  ++      D++++ SSG +    
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
           +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+ 
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
            +++I F P+ +     +GSDDAT R++DL A + + T   D     +TS++ +  G  L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
           ++   D   N+WD
Sbjct: 286 LAGYDDFNCNVWD 298

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31  GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           G+++AC   ++I +I +L     N  +   + G +  ++      D++++ SSG +    
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 178
Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
           +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+ 
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
            +++I F P+ +     +GSDDAT R++DL A + + T   D     +TS++ +  G  L
Sbjct: 239 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 204 ISAGRDKVVNLWD 216
           ++   D   N+WD
Sbjct: 297 LAGYDDFNCNVWD 309

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 37  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 95
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 96  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 153 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 200
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
            H++++  L V       ATG  D+ + +W+
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54  STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
           +T+ G S  +  L  +PD + L S G+   + VW  +  +     L+++  H G    +A
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
            C     +LAT G  +DR + +W+V  G C      H  V S IL+ P   + +   G  
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 342
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
              + +W       VA L  H SRV S+ ++ DG+T+ SA  D+ + LW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 211
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 269
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 270 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 323
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 598 ADGLVKLW 605
           AD  ++LW
Sbjct: 384 ADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54  STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
           +T+ G S  +  L  +PD + L S G+   + VW  +  +     L+++  H G    +A
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
            C     +LAT G  +DR + +W+V  G C      H  V S IL+ P   + +   G  
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 353
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
              + +W       VA L  H SRV S+ ++ DG+T+ SA  D+ + LW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 222
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 280
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 281 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 334
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 598 ADGLVKLW 605
           AD  ++LW
Sbjct: 395 ADETLRLW 402

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54  STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
           +T+ G S  +  L  +PD + L S G+   + VW  +  +     L+++  H G    +A
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
            C     +LAT G  +DR + +W+V  G C      H  V S IL+ P   + +   G  
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 262
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
              + +W       VA L  H SRV S+ ++ DG+T+ SA  D+ + LW
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 77  KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 131
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 189
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 190 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 243
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 598 ADGLVKLW 605
           AD  ++LW
Sbjct: 304 ADETLRLW 311

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 413 LIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465
           L+  GS D++V +W  E           + +  GH   V  VA+S     +L + S D +
Sbjct: 72  LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKS 130
Query: 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-- 523
           + +W  D      E     +  +V+  H +D+  +   P+++L+ + S D T  +W+   
Sbjct: 131 VWIWETD------ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Query: 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSI--------SDGSCLKT 573
            D   V    GH+  +WS +F   + V    SG  D T+++W           +  C   
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244
Query: 574 F-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKI 623
             + H   V   ++   G  I S GADG++ ++    GE         C   Y+ +  K 
Sbjct: 245 LPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303
Query: 624 WALAVGKKTEMFATGGSDALVNLW 647
             L +  KT + ATGG D +VN W
Sbjct: 304 --LELNGKT-ILATGGDDGIVNFW 324

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 508 LVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563
           ++ TGS DR     +  +    L+ V+    HK+ I SV + P   ++   S D T+ IW
Sbjct: 26  ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 564 SISDGS-------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGE---C 612
           +  + +        L   EGH + V   ++   G  + +C  D  V +W T  +GE   C
Sbjct: 86  AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
           I+   +H   +  +       + A+   D  V +W D
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
           + H   I  ++F P  + +I++S D  +KIWS+ DGS  +T  GH ++V   + + RG  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHED 621
           ++S   DG ++LW   TG  I T+++ E+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
           + H   I  ++F P  + +I++S D  +KIWS+ DGS  +T  GH ++V   + + RG  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHED 621
           ++S   DG ++LW   TG  I T+++ E+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 29/326 (8%)
Query: 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 401
           +L+  + L G++ ++  L +   E+ ++  A+   ++ V++  +   ++ +  H   V+ 
Sbjct: 55  DLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM- 112
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQ 454
              CA +     +  G  D++  +++  S+           V TGH G   +  +    +
Sbjct: 113 --ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGS 513
             L++GS D T  +W          Q +++      + H  D+ SL++ + N ++  +GS
Sbjct: 171 TRLITGSGDQTCVLWDVT-----TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 514 QDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572
            D T  +W L      V T+ GH+  I SV+F P  Q   T S D T +++ +  G  L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Query: 573 TF-------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY----DKHED 621
            +       +     V   +F   G  + +  ++G   +W     E +       + HE 
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345
Query: 622 KIWALAVGKKTEMFATGGSDALVNLW 647
           +I  L +        TG  D  + +W
Sbjct: 346 RISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491
           CC  +  GH G V ++ ++ + +N++VS S D  + VW  + L+      + L    V+ 
Sbjct: 58  CCRTL-QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVW--NALTSQKTHAIKLHCPWVME 113
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEF 544
                    A APN   V  G  D    ++ L        ++       GHK    S ++
Sbjct: 114 C--------AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 545 SPVDQV-VITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQI-VSCG 597
            P  +  +IT SGD+T  +W ++ G  +  F      GHT+ VL  S  +  A + +S  
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 598 ADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
            D  V+LW +R T   + TY  HE  I ++      + F TG  D    L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 13/241 (5%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
           IVTG ++  +RLW+ ++   + V   H   + +V ++K     ++S   ++   +W+   
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNV-- 178
Query: 474 LSDDAEQPMNLK---AKAVVAAHGKDINSLAV----APNDSLVCTGSQDRTACVWRLPDL 526
           +S    Q   LK     ++ A +     SL V      +D  V  G +     V+++ + 
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-AIFVYQITEK 237
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
                  GH   I  +EF+  ++++++AS D T++IW   +G+    F GH+ S++ AS+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646
           +    +++SC  DG V+LW+++    +A        I+A  + +  + +A    D  VN+
Sbjct: 298 VGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 647 W 647
           +
Sbjct: 357 Y 357

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 33/257 (12%)
Query: 39  GESINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSR-EIRVWDL 89
           G  IN +D+     +  + GGSD +  L    +         K + S G    ++  + +
Sbjct: 43  GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102
Query: 90  STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
            T++    W  HD            G+  ++  D+ + VWD +       F   + V S 
Sbjct: 103 ETVQ----WYPHDT-----------GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH 147
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD-GSTLISAGR 208
            +    T   L+  G+    V++ DL +  C   L  H   + +++ +      L +A  
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 209 DKVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267
           D  V LWD+R  S C +T+  +   ++        A +S  +++N +       S  +H 
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKS-------QAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 268 ITVGERGIVRMWNADSA 284
           +TVG    +R+WN+ + 
Sbjct: 261 LTVGTDNRMRLWNSSNG 277

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 25/189 (13%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
           H  +V  V +         S S D T+KVW  + L        N + + V + H      
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFE-ETVYSHHMS---- 150
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK 558
             V+    LV  G++     +  L         +GH++ I +V +SP  D ++ TAS D 
Sbjct: 151 -PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 559 TIKIWSISDGS-CLKTFEGHTSSVLRA---------------SFLTRGAQIVSCGADGLV 602
            +K+W +   S CL T + H     +A                F + G  +++ G D  +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 603 KLWTVRTGE 611
           +LW    GE
Sbjct: 270 RLWNSSNGE 278

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99  KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSI 150
           +GH     G++ +P+  G L +A  D  + +WD++     H        F GH  VV  +
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
            +H    +SL  S +DD  + +WD       K   T+D H + V  ++       +++ G
Sbjct: 238 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 208 R-DKVVNLWDLRDYSCKL 224
             DK V LWDLR+   KL
Sbjct: 297 SADKTVALWDLRNLKLKL 314

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99  KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHY-------FKGHKGVVSSI 150
           +GH     G++ +P+  G L +A  D  + +WD++     H        F GH  VV  +
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
            +H    +SL  S +DD  + +WD       K   T+D H + V  ++       +++ G
Sbjct: 240 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 208 R-DKVVNLWDLRDYSCKL 224
             DK V LWDLR+   KL
Sbjct: 299 SADKTVALWDLRNLKLKL 316

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99  KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHY-------FKGHKGVVSSI 150
           +GH     G++ +P+  G L +A  D  + +WD++     H        F GH  VV  +
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
            +H    +SL  S +DD  + +WD       K   T+D H + V  ++       +++ G
Sbjct: 242 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 208 R-DKVVNLWDLRDYSCKL 224
             DK V LWDLR+   KL
Sbjct: 301 SADKTVALWDLRNLKLKL 318

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 485 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 536
           K   +V  H   +  +A  P ND+++ +GS+D T  VW +PD  LV      V+T  GH 
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 537 RGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 593
           + +  V + P  Q V+++A  D  I +W +  G+ + T   + H  ++    +   GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 594 VSCGADGLVKLWTVRTGECIATYDK-HE 620
            +   D  V++   R G  +A  D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 485 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 536
           K   +V  H   +  +A  P ND+++ +GS+D T  VW +PD  LV      V+T  GH 
Sbjct: 72  KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 537 RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 593
           + +  V + P  Q V+ ++G D  I +W +  G+ + T   + H  ++    +   GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 594 VSCGADGLVKLWTVRTGECIATYDK-HE 620
            +   D  V++   R G  +A  D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L   L+S S DHT+ +W                             
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +            K   +V AH  ++N L+  P ++ ++ TGS 
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + TF  HK  I+ V +SP ++ ++ +SG D+ + +W +S      
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
                 DG    L    GHT+ +   S+      ++ S   D ++++W +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 41  SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98
           +++I DL+  +  IK+ +   +    ALA+SPD K+ FS      I VWDL     +R +
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 99  KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDT 156
           +GH   A  +     G  L T G D  V  WD+  G     H F      + S+ + P  
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ---IFSLGYCPTG 236
Query: 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
           +   L  G + + V V   + K     L  H S V S+     G   +S G+D ++N W
Sbjct: 237 E--WLAVGMESSNVEVLH-VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--I 497
           H   V AV  S   ++    G     +KVW       D   P N    + +    +D  I
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKG--CVKVW-------DISHPGNKSPVSQLDCLNRDNYI 100
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
            S  + P+   +  G +  T  +W L  P               +++  SP  +V  +  
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 615
            D  I +W + + + ++ F+GHT           G ++ + G D  V+ W +R G  +  
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
           +D    +I++L      E  A G   + V + H
Sbjct: 221 HD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
           L GHS  V  L   A  S  + + +G  DN V++WD+ S       T H  AV AVA+  
Sbjct: 213 LQGHSSEVCGL---AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 452 KLQNFLVS--GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509
              N L +  G+ D  I  W+               A+      G  + SL  +P+   +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWN-----------AATGARVNTVDAGSQVTSLIWSPHSKEI 318
Query: 510 CT--GSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
            +  G  D    +W      L   V    H   +     SP  +++ TA+ D+ +K W +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 566 SDGSCLK 572
            DG  +K
Sbjct: 379 YDGDHVK 385

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 61/228 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L   L+S S DHT+ +W                             
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 471 --------FDGLSDDAEQPM-------NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +  +         K   +V AH  ++N L+  P ++ ++ TGS 
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + TF  HK  I+ V +SP ++ ++ +SG D+ + +W +S      
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLW 605
                 DG    L    GHT+ +   S+      ++ S   D + ++W
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 39/255 (15%)
Query: 426 WDSESRCCVGVG---------------------TGHMGAVGAVAFSKKLQNFLVSGSSDH 464
           WDSES+    VG                     TG   A+ +V F       ++SGS D+
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524
           T+ +  F+G           K K+    H K ++S+   P+ SL  +   D T  ++   
Sbjct: 171 TVAI--FEGPP--------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 525 DLVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G 576
           D      F         H   ++ + +SP    + +AS DKTIKIW+++     KT   G
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
                 +   +     +VS  A+G +       G        H   I AL+     +   
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 637 TGGSDALVNLWHDST 651
           +  ++  +N W  ST
Sbjct: 341 SADAEGHINSWDIST 355

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
           GH      ++++  L   L+S S DHTI +W                             
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
                 DG    L    GHT+ +   S+      ++ S   D ++++W +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
           +  +   GH+R +  V+++    ++ + S D +  +W   +G  L T +GHT ++     
Sbjct: 23  MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATY 616
                  V+  AD  +KLW V  G+C+AT+
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATW 112

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 568 GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625
           GS +K  +  GH   + +  +   G  + SC  D    +W    GE + T D H   IW+
Sbjct: 20  GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
           + V   T+   TG +D  + LW
Sbjct: 80  IDVDCFTKYCVTGSADYSIKLW 101

>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An Archaeal Surface Layer Protein Length = 391

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 7/180 (3%)
Query: 32  SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLS 90
           ++IA +  ++I+++D+++  + +TI  GS+   A+ +SPD  K+  ++ HS ++ + D +
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNPXGAV-ISPDGTKVYVANAHSNDVSIIDTA 62
Query: 91  TLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
           T   + +      P  G+A  P G  +  T  A   + V D          K  K  +  
Sbjct: 63  TNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPL-G 120
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
           +   PD  K L  + + D TV V + + K  + T+    S    +A+T DG+ +  A  D
Sbjct: 121 LALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGIAVTPDGTKVYVANFD 178

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 186/492 (37%), Gaps = 86/492 (17%)
Query: 78  SGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHP------------------------ 112
           SGHS+ I    L   + +RS   G DG  +     P                        
Sbjct: 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216
Query: 113 -SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATV 170
            SG  + T G+DRK+  +D   G    Y +  +  V   +F      S  F+    DAT+
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 276
Query: 171 RVWDLLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVP 227
           RVWD+   KCV   TLDK       + + + G+  +IS   D  +N ++L       T+ 
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336
Query: 228 TYEMVEAVCAIPP--GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285
            +        + P    ++D  +  ++  ++ +   +L           IV + N+  A 
Sbjct: 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNL-----------IVSLDNS-KAQ 384
Query: 286 LYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCV-TADQQLLLYTTVEVPEKKMEL 343
            Y   S D T+    +   + G        +N G   V T D  LL+  +        ++
Sbjct: 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF-----TGDI 439
Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ---VQVYDLSSMSCSYVLAGHSEIVL 400
           I S RL      +         + Y+AV   +E+   +QV+ LS +  S+ L   + +  
Sbjct: 440 IKSVRLNSPGSAV------SLSQNYVAVG--LEEGNTIQVFKLSDLEVSFDL--KTPLRA 489
Query: 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV----GVGTGHMGAVGAVAFSKKL--- 453
                ++S  +  I  G     + L+D +SR          T  + A+      K     
Sbjct: 490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549
Query: 454 ---QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
              ++ + +GS D  I ++S        ++PM  K    + AH   +N+L      +LV 
Sbjct: 550 EIEEDLVATGSLDTNIFIYS-------VKRPM--KIIKALNAHKDGVNNLLWETPSTLVS 600
Query: 511 TGSQDRTACVWR 522
           +G+    AC+ R
Sbjct: 601 SGAD---ACIKR 609

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 414 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWS 470
           + T S D ++++++   E+   +   TGH G V  V ++  K    L S S D  + +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 526
                   E+       AV A H   +NS+  AP++   L+   S D    V    +   
Sbjct: 84  --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 527 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 571
            S +    H  G+ S  ++P               +  +T   D  +KIW   SD     
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 572 --KTFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 615
              T EGH+          +VL  S+L   +Q  +C       +WT    +      +  
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
            +K  D +W  +      + A  G D  V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 99  KGHDGPAIGMA-CHP-SGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP 154
           +GH+GP   +A  HP  G +LA+   DRKV++W  + G    +H   GH   V+S+ + P
Sbjct: 54  RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113
Query: 155 DTDKSLLFSGSDDATVRV 172
                +L  GS D  + +
Sbjct: 114 HDYGLILACGSSDGAISL 131

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVR 171
           SG  + T G+DRK+  +D   G    Y +  +  V   +F      S  F+    DAT+R
Sbjct: 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 172 VWDLLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDL 217
           VWD+   KCV   TLDK       + + + G+  +IS   D  +N ++L
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	882
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-38
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-30
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-25
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-24
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-22
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-23
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-17
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-15
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-14
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-13
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	8e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  143 bits (360), Expect = 3e-38
 Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 74/319 (23%)

Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
           Y L+GH   V  +          ++V+ S+D ++++WD E+        GH  +V  ++F
Sbjct: 11  YALSGHRSPVTRV---IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 450 SKKLQ-----------------------------------------NFLVSGSSDHTIKV 468
               +                                         + +VS S D TIK+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528
           W                       H + +  +    + +L+ + S D+T  VW +     
Sbjct: 128 WEVQ----------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177

Query: 529 VVTFRGHKRGIWSVEF--------------------SPVDQVVITASGDKTIKIWSISDG 568
               R H+  +  + +                          +++ S DKTIK+W +S G
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
            CL T  GH + V    F + G  I+SC  D  +++W  +   C+ T + HE  + +L  
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 629 GKKTEMFATGGSDALVNLW 647
            K      TG  D  V +W
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 4e-31
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 23/210 (10%)

Query: 28  SSDGSFIACACGESINIVD-LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
             +G  I  A  +    +  +       T  G  + +  +  + D  L+ S  + + +RV
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACH--------------------PSGGLLATAGADRKV 126
           W ++T +C    + H      ++                        G  L +   D+ +
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186
            +WDV  G C     GH   V  +LFH       + S +DD T+RVWD   K+C+ TL+ 
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
           H   VTS+        +++   D+ V +W+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 4e-30
 Identities = 76/375 (20%), Positives = 128/375 (34%), Gaps = 67/375 (17%)

Query: 53  KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
           K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
           SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKM 127

Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
           W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +  V
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
               +  P S+                      +       G     +          S 
Sbjct: 188 VECISWAPESS----------------------YSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
           D TI      +                                             LVG+
Sbjct: 226 DKTIKMWDVSTGM---------------------------------------CLMTLVGH 246

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
           +  +  + F     +++    + + ++V+D  +  C   L  H   V  L          
Sbjct: 247 DNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL---DFHKTAP 302

Query: 413 LIVTGSKDNSVRLWD 427
            +VTGS D +V++W+
Sbjct: 303 YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.0 bits (224), Expect = 2e-20
 Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 31/234 (13%)

Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
           +GH   V  V F     + +VS S D TIKVW ++              +  +  H   +
Sbjct: 14  SGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYE----------TGDFERTLKGHTDSV 62

Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
             ++   +  L+ + S D T  +W       + T  GH   + SV   P    +++AS D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
           KTIK+W +  G C+KTF GH   V        G  I SC  D  V++W V T EC A   
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 618 KHEDKIWALA--------------------VGKKTEMFATGGSDALVNLWHDST 651
           +H   +  ++                     GK      +G  D  + +W  ST
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 10  YGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALAL 68
                 + +  G         G F+     + +I + D+S      T+ G  + +  +  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 69  SPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128
               K + S    + +RVWD    +C+++   H+     +  H +   + T   D+ V V
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 129 WD 130
           W+
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.3 bits (204), Expect = 8e-18
 Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 42/171 (24%)

Query: 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582
           +P         GH+  +  V F PV  V+++AS D TIK+W    G   +T +GHT SV 
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 583 ------------------------------------------RASFLTRGAQIVSCGADG 600
                                                       S +  G  IVS   D 
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
            +K+W V+TG C+ T+  H + +  +   +   + A+  +D  V +W  +T
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (317), Expect = 2e-32
 Identities = 58/332 (17%), Positives = 113/332 (34%), Gaps = 44/332 (13%)

Query: 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413
            +I D +    +     +  NI+ V       M     L GH   +  +      +   L
Sbjct: 16  NQIRDARKACADATLSQITNNIDPV---GRIQMRTRRTLRGHLAKIYAM---HWGTDSRL 69

Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
           +V+ S+D  + +WDS +   V         V   A++    N++  G  D+   +++   
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKT 128

Query: 474 LSDDAEQPMNLKAKA-----------------------------------VVAAHGKDIN 498
              +      L                                           H  D+ 
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188

Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558
           SL++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 559 TIKI--WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
           T ++            + +     +   SF   G  +++   D    +W     +     
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
             H++++  L V       ATG  D+ + +W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (297), Expect = 1e-29
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 72  DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
            +L  S       ++WD+    C +++ GH+     +   P+G   AT   D    ++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 132 DGGFCTHYFKGHKGV--VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS 189
                   +     +  ++S+ F       LL +G DD    VWD L       L  H +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADRAGVLAGHDN 313

Query: 190 RVTSMAITSDGSTLISAGRDKVVNLWD 216
           RV+ + +T DG  + +   D  + +W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (268), Expect = 5e-26
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 60/328 (18%)

Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84

Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443
            + +  + +   S  V+    CA +     +  G  DN   +++ ++R      +  +  
Sbjct: 85  YTTNKVHAIPLRSSWVMT---CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141

Query: 444 VGAVAFSKKLQ--------------------------------------------NFLVS 459
                   +                                                 VS
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201

Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
           G+ D + K+W                 +     H  DIN++   PN +   TGS D T  
Sbjct: 202 GACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 520 V--WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 577
           +   R    +   +      GI SV FS   ++++    D    +W            GH
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311

Query: 578 TSSVLRASFLTRGAQIVSCGADGLVKLW 605
            + V        G  + +   D  +K+W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (210), Expect = 2e-18
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%)

Query: 85  RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
            +WD+ T +   ++ GH G  + ++  P   L  +   D    +WDV  G C   F GH+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRV--WDLLAKKCVATLDKHFSRVTSMAITSDGST 202
             +++I F P+ +     +GSDDAT R+       +    + D     +TS++ +  G  
Sbjct: 227 SDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 203 LISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261
           L++   D   N+WD         +  ++  V  +     G                    
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM------------------- 325

Query: 262 SLEIHFITVGERGIVRMWN 280
                  T      +++WN
Sbjct: 326 ----AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 49/336 (14%), Positives = 97/336 (28%), Gaps = 40/336 (11%)

Query: 92  LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151
           ++  R+ +GH      M       LL +A  D K+++WD       H        V +  
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211
           + P  +   +  G  D    +++L  ++    + +  +  T                D  
Sbjct: 105 YAPSGN--YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR-------FLDDN 155

Query: 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271
             +    D +C L                G      L+   +             F++  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR------------LFVSGA 203

Query: 272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331
                ++W+                       +    A    P+       + D    L+
Sbjct: 204 CDASAKLWDVREG----------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391
                 E                 I  + F  +  + L    +     V+D      + V
Sbjct: 254 DLRADQELMT-----YSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGV 307

Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
           LAGH   V CL    ++   + + TGS D+ +++W+
Sbjct: 308 LAGHDNRVSCL---GVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 25  LVVSSDGSFIACACGES---INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS 81
           +    +G+  A    ++   +  +      +  + +     IT+++ S   +LL +    
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 82  REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
               VWD           GHD     +     G  +AT   D  + +W+
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 25/267 (9%)

Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
               +    VL GH + V+   TC    G   IV+GS DN++++W + +  C+    GH 
Sbjct: 2   RRGELKSPKVLKGHDDHVI---TCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
           G V +      +           T +                    + V         + 
Sbjct: 58  GGVWSSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
               D+ +     +   C+  L   V+ V    +             + V++ + D  +K
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-----------RRVVSGAYDFMVK 160

Query: 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 621
           +W     +CL T +GHT+ V    F   G  +VS   D  +++W V TG CI T   H+ 
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

Query: 622 KIWALAVGKKTEMFATGGSDALVNLWH 648
               + +  K  +  +G +D+ V +W 
Sbjct: 219 LTSGMEL--KDNILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 1e-22
 Identities = 63/390 (16%), Positives = 126/390 (32%), Gaps = 61/390 (15%)

Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188
           W           KGH   V + L       + + SGSDD T++VW  +  KC+ TL  H 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 189 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248
             V S  +  +                 + +      + T     +              
Sbjct: 58  GGVWSSQMRDNIII-----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 308
            S +         + +   + +G    VR    D   +    + D  +     +++    
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETET--- 168

Query: 309 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368
                                                   L G+   +  L+F G    +
Sbjct: 169 ------------------------------------CLHTLQGHTNRVYSLQFDG---IH 189

Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
           +   +    ++V+D+ + +C + L GH  +        +     ++V+G+ D++V++WD 
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNILVSGNADSTVKIWDI 244

Query: 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
           ++  C+    G      AV   +  +NF+++ S D T+K+W         E   NL    
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL----KTGEFIRNLVTLE 300

Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518
                G  +  +  +    +   GS++ T 
Sbjct: 301 -SGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (241), Expect = 2e-22
 Identities = 58/396 (14%), Positives = 116/396 (29%), Gaps = 67/396 (16%)

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
           W    LK  +  KGHD   I       G  + +   D  + VW    G C     GH G 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
           V S     +   S            +    A+        +    T   +      ++S 
Sbjct: 60  VWSSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266
            RD  + +WD+    C   +  +                                     
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR------------------------R 149

Query: 267 FITVGERGIVRMWNADS-ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325
            ++     +V++W+ ++  CL+  +     +     D                ++  + D
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH-------------VVSGSLD 196

Query: 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 385
             + ++                   G+      ++    ++  L        V+++D+ +
Sbjct: 197 TSIRVWDVETGNCIHTL-------TGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKT 246

Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV-----GVGTGH 440
             C   L G ++    +     +     ++T S D +V+LWD ++   +         G 
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 441 MGAVGAVAFSKKLQNFLVSGSSDHT----IKVWSFD 472
            G V  +  S   +     GS + T    + V  FD
Sbjct: 305 GGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 1e-20
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 14/194 (7%)

Query: 33  FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92
            ++ A    + + D    +   T++G ++ + +L    D   + S      IRVWD+ T 
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG 207

Query: 93  KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
            C+ +  GH              +L +  AD  V +WD+  G C    +G     S++  
Sbjct: 208 NCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-T 264

Query: 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG 207
               +K+ + + SDD TV++WDL   + +  L           V  +  ++         
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 208 RDK----VVNLWDL 217
           R+      + + D 
Sbjct: 325 RNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (220), Expect = 1e-19
 Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 66/341 (19%)

Query: 345 LSKRLVGYNEEILD-LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403
             K L G+++ ++  L+F G     +   ++   ++V+   +  C   L GH+  V    
Sbjct: 8   SPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 404 -----------------------------------TCALSSGKILIVTGSKDNSVRLWDS 428
                                                 +   +  +V+GS+D ++R+WD 
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
           E+  C+ V    MG V AV   +     +VSG+ D  +KVW  +                
Sbjct: 125 ETGQCLHV---LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE------------TETC 169

Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
           +    G      ++  +   V +GS D +  VW +     + T  GH+     +E     
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-- 227

Query: 549 QVVITASGDKTIKIWSISDGSCL---KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
            ++++ + D T+KIW I  G CL   +    H S+V    F      +++   DG VKLW
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 285

Query: 606 TVRTGECIATY-----DKHEDKIWALAVGKKTEMFATGGSD 641
            ++TGE I              +W +       + A G  +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 8e-19
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436
            ++V+D+ +  C +VL GH   V C+           +V+G+ D  V++WD E+  C+  
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYD-----GRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496
             GH   V ++ F       +VSGS D +I+VW  +                +    G  
Sbjct: 173 LQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVE------------TGNCIHTLTGHQ 217

Query: 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITAS 555
             +  +   D+++ +G+ D T  +W +     + T +G +K              VIT+S
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277

Query: 556 GDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGADGL----VKLW 605
            D T+K+W +  G  ++        G    V R               +G     + + 
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 1e-13
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 580
           WR  +L S    +GH   + +         +++ S D T+K+WS   G CL+T  GHT  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 581 VLRASF 586
           V  +  
Sbjct: 60  VWSSQM 65

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 27  VSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREI 84
           +    + +     + ++ I D+       T++G +        L  +   + +S     +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 85  RVWDLSTLKCLRSWK-----GHDGPAIGMACHPSGGLLATAGAD----RKVLVWDVD 132
           ++WDL T + +R+       G  G    +    +  + A    +     K+LV D D
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 1e-24
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476
           GS D +VR+WD  +  C    +   G             ++ +GS D  ++VW  +    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSE---T 236

Query: 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV------- 529
                           H   + S+    +   V +GS DR+  +W L +  +        
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 530 -----VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL-- 582
                VT+ GHK  + SV  +  D+ +++ S D+ +  W    G+ L   +GH +SV+  
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 583 ----RASFLTRGAQIVSCGADGLVKLWTVR 608
                +S         +   D   ++W  +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 3e-23
 Identities = 61/311 (19%), Positives = 105/311 (33%), Gaps = 32/311 (10%)

Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----LCLDTCALSSGKILIVTGSKDN 421
           +YLA   N +  QVY +S  S    L+  S        L   +   S   I  V  S D 
Sbjct: 75  EYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
                 +E R        +   V  +   ++     +         V      +      
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS-LDYFPSGDKLVSGSGDRTVRIWDL 192

Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-------VSVVTFRG 534
              +    ++             +   +  GS DR   VW                +  G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------------CLKTFEGHTSSVL 582
           HK  ++SV F+   Q V++ S D+++K+W++ + +            C  T+ GH   VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV------GKKTEMFA 636
             +       I+S   D  V  W  ++G  +     H + + ++AV      G +  +FA
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 637 TGGSDALVNLW 647
           TG  D    +W
Sbjct: 373 TGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (248), Expect = 5e-23
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 27/175 (15%)

Query: 69  SPDDKLLFSSGHSREIRVWDLSTLKC-------LRSWKGHDGPAIGMACHPSGGLLATAG 121
             D K + +    R +RVWD  T            S  GH      +     G  + +  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

Query: 122 ADRKVLVWDVDGG------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169
            DR V +W++                C   + GHK  V S+    + +   + SGS D  
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRG 331

Query: 170 VRVWDLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR 218
           V  WD  +   +  L  H + V S+A+ +      + +   +   D    +W  +
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.6 bits (241), Expect = 3e-22
 Identities = 54/373 (14%), Positives = 113/373 (30%), Gaps = 36/373 (9%)

Query: 117 LATAGADRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
                 +   ++++           H    H  VV  + F  D     L +G +  T +V
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGCNK-TTQV 87

Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
           + +     VA L    +         + +T  S   D  +          K      E  
Sbjct: 88  YRVSDGSLVARLSDDSAANKDP---ENLNTSSSPSSDLYIRSVCF-SPDGKFLATGAEDR 143

Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
                          L  + Q              ++      VR+W+  +       S 
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
           +  ++        G   A    S    + V   +   L   ++          ++   G+
Sbjct: 204 EDGVTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLVERLDSE--------NESGTGH 253

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLD 403
            + +  + F   + Q +   +    V++++L + +        +              + 
Sbjct: 254 KDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ-----NFLV 458
           + A +     I++GSKD  V  WD +S   + +  GH  +V +VA +         N   
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 459 SGSSDHTIKVWSF 471
           +GS D   ++W +
Sbjct: 373 TGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.5 bits (233), Expect = 4e-21
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 28  SSDGSFIACACGE-SINIVDLSNASIKSTIE-------GGSDTITALALSPDDKLLFSSG 79
             DG +IA    + ++ + D     +   ++       G  D++ ++  + D + + S  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

Query: 80  HSREIRVWDLSTLK------------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL 127
             R +++W+L                C  ++ GH    + +A   +   + +   DR VL
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDL 175
            WD   G      +GH+  V S+     +    + ++  +GS D   R+W  
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.9 bits (221), Expect = 1e-19
 Identities = 67/335 (20%), Positives = 109/335 (32%), Gaps = 97/335 (28%)

Query: 25  LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS------------------DTITAL 66
           +  S+DG ++A  C ++  +  +S+ S+ + +   S                    I ++
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 67  ALSPDDKLLFSSGHSRE------------------------------------------I 84
             SPD K L +    R                                           +
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187

Query: 85  RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH------ 138
           R+WDL T +C  +    DG          G  +A    DR V VWD + GF         
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247

Query: 139 -YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CVATLD 185
               GHK  V S++F  D     + SGS D +V++W+L                C  T  
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245
            H   V S+A T +   ++S  +D+ V  WD +  +  L +  +       A+  GS+  
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365

Query: 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280
              +                 F T       R+W 
Sbjct: 366 PEYN----------------VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 3e-18
 Identities = 55/284 (19%), Positives = 93/284 (32%), Gaps = 30/284 (10%)

Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453
            H+ +V C      S+    + TG  + + +++       V   +    A          
Sbjct: 60  DHTSVVCC---VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 454 QNFL-------VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
            +         V  S D        +          N K   ++  H +DI SL   P+ 
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
             + +GS DRT  +W L      +T                 + +   S D+ +++W   
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 567 DGSC-------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------- 611
            G          ++  GH  SV    F   G  +VS   D  VKLW ++           
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 612 ----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
               C  TY  H+D + ++A  +  E   +G  D  V  W   +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (197), Expect = 1e-16
 Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 21/261 (8%)

Query: 414 IVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
            +    ++   L++      + V       H   V  V FS     +L +G  + T +V+
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYLATGC-NKTTQVY 88

Query: 470 SFDGLS--------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
                S          A +       +   +    I S+  +P+   + TG++DR   +W
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581
            + +   V+  +GH++ I+S+++ P    +++ SGD+T++IW +  G C  T        
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208

Query: 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------HEDKIWALAVGKKTEM 634
             A     G  I +   D  V++W   TG  +   D        H+D ++++   +  + 
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 635 FATGGSDALVNLWHDSTAAER 655
             +G  D  V LW+   A  +
Sbjct: 269 VVSGSLDRSVKLWNLQNANNK 289

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 8/75 (10%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 25  LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALA------LSPDDKLLFS 77
           +  + +  +I     +  +   D  + +    ++G  +++ ++A      L P+  +  +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 78  SGHSREIRVWDLSTL 92
                + R+W    +
Sbjct: 374 GSGDCKARIWKYKKI 388

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 7e-24
 Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 35/377 (9%)

Query: 99  KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158
           +GH    I          + T   D+ + V+D           GH G V ++ +      
Sbjct: 9   RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--- 64

Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAGRDKVVNLWD 216
            +L SGS D TVRVWD+    C    + H S  R   +    +   +++  RD  +++W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
           L   S             V   P  + +   +   +  ++                    
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-------------------- 164

Query: 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336
               +    +    S D T+        +     +             +++  +  +++ 
Sbjct: 165 -RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396
             +  +L   + +         +  L   +++L  A     ++ +D +  S  +     +
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283

Query: 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQN 455
              +            ++V+GS +N   +++  S   V          + +V F  K   
Sbjct: 284 LSAIT----TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--T 336

Query: 456 FLVSGSSDHTIKVWSFD 472
            + +   D    +   D
Sbjct: 337 LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.5 bits (238), Expect = 4e-22
 Identities = 58/376 (15%), Positives = 118/376 (31%), Gaps = 30/376 (7%)

Query: 53  KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
           ++T+ G   ++    L  +D  + +    + IRV+D    K L    GHDG    +    
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
            GG+L +   DR V VWD+  G CTH F+GH   V  +      +   + +GS D T+ V
Sbjct: 64  -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
           W L  +  V    +            +    +   R  + ++  +  +   +   +Y+  
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
             V  +             ++          +       +  I      +   +Y  +  
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
              +       K   +AA             + +                         +
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF----------------------SYH 280

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGK 411
           +  +  +      +  L   +   Q  +Y+L S    +  +   ++ +  ++      GK
Sbjct: 281 HTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVN----FKGK 335

Query: 412 ILIVTGSKDNSVRLWD 427
            L+    KD    L  
Sbjct: 336 TLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 54/333 (16%)

Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL+   +      
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGILVSGSTDRTVRV 78

Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
               +  C       +           K   ++V+GS D+T+ VW     S   +     
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138

Query: 485 KAKAVVAAHGKDINSLAVAPNDS-----------LVCTGSQDRTACVWRLPDLVSVVTFR 533
               V     ++   + V                +V +GS D T  VW +  +  +    
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198

Query: 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------------------ 575
           GH   I+S  +    +  I+AS D TI+IW + +G  + T +                  
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258

Query: 576 --------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-A 614
                                H +++   +       I+  G++    ++ +R+G+ + A
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
              K  D+IW++    KT + A    D    L 
Sbjct: 319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (173), Expect = 8e-14
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 35/255 (13%)

Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450
            L GH   V+   TC        ++TG+ D  +R++DS ++  +   +GH G V A+ ++
Sbjct: 7   TLRGHMTSVI---TCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
                 LVSGS+D T++VW             +                +    N   + 
Sbjct: 63  H--GGILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVRCLDIVEYKNIKYIV 112

Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------------------ 552
           TGS+D T  VW+LP   SV                  +   +                  
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172

Query: 553 ---TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
              + S D T+ +W ++   CL    GHT  +    +     + +S   D  +++W +  
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232

Query: 610 GECIATYDKHEDKIW 624
           GE + T   H   + 
Sbjct: 233 GELMYTLQGHTALVG 247

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.9 bits (169), Expect = 3e-13
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
           T RGH   + +      D  VIT + DK I+++   +   L    GH   V    +   G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 64

Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM--FATGGSDALVNLW 647
             +VS   D  V++W ++ G C   ++ H   +  L + +   +    TG  D  +++W
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 23/140 (16%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
           +  +  H   + +  +   D+ V TG+ D+   V+   +   ++   GH  G+W+++++ 
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 547 VDQVVITASGDKTIKIWSISD--GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
              ++++ S D+T+++W I     + +      T   L          IV+   D  + +
Sbjct: 64  -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 605 WTVRTGECIATYDKHEDKIW 624
           W +     +  + +  D   
Sbjct: 123 WKLPKESSVPDHGEEHDYPL 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 632
           T  GH +SV+          +++   D +++++     + +     H+  +WAL      
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 633 EMFATGGSDALVNLWHDS 650
            + +      +       
Sbjct: 66  ILVSGSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 6e-08
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVV 551
           H  +++++        +     +    ++ L     V          IWSV F     +V
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLV 338

Query: 552 ITASGDKTIKIWSIS 566
                D    +  + 
Sbjct: 339 AAVEKDGQSFLEILD 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 1e-23
 Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 48/300 (16%)

Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444
           S+   +  +  S+ V CL        +  IV+G +DN++++WD  +  C  + TGH G+V
Sbjct: 4   SLQRIHCRSETSKGVYCLQ----YDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58

Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA- 503
             + + +++     S S+     V + + L+        +             +      
Sbjct: 59  LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 504 ---------------------------PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 536
                                       +D  + + S DRT  VW       V T  GHK
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 596
           RGI  +++    ++V++ S D TI++W I  G+CL+  EGH    L         +IVS 
Sbjct: 179 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSG 234

Query: 597 GADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
             DG +K+W +             C+ T  +H  +++ L   +      +   D  + +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (177), Expect = 1e-14
 Identities = 48/291 (16%), Positives = 87/291 (29%), Gaps = 76/291 (26%)

Query: 57  EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP------------ 104
              S  +  L    DD+ + S      I++WD +TL+C R   GH G             
Sbjct: 12  SETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 105 --------------------------AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138
                                        +    + G++ T   DR + VWD+       
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198
             +       + +   D D   + S S D T++VW+    + V TL+ H   +  +    
Sbjct: 130 LRRVLV-GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--Y 186

Query: 199 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK- 257
               ++S   D  + LWD+   +C   +  +E +               +S      IK 
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD----NKRIVSGAYDGKIKV 242

Query: 258 ---------------KKRRSLEIH-------------FITVGERGIVRMWN 280
                             R+L  H              ++      + +W+
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 1e-13
 Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 36/261 (13%)

Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW---------SFDGLSDDAEQPMNLKAKA 488
           +     V  + +       +VSG  D+TIK+W            G +         +   
Sbjct: 12  SETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE----- 543
           +  +    +    V   + L             R  + + V   +     +W +      
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 544 ---------------FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588
                              D+ +++ASGD+TIK+W+ S    ++T  GH   +    +  
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-- 186

Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
           R   +VS  +D  ++LW +  G C+   + HE+ +    +    +   +G  D  + +W 
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWD 244

Query: 649 DSTAAEREEAFRKEEEAVLRG 669
              A +            L  
Sbjct: 245 LVAALDPRAPAGTLCLRTLVE 265

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 38/298 (12%), Positives = 85/298 (28%), Gaps = 22/298 (7%)

Query: 140 FKGHKGVVSSIL-FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198
                     +     D     + SG  D T+++WD    +C   L  H   V  +    
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 199 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258
               +I  G           +    L    +     +          +     +      
Sbjct: 66  R---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318
              +       +                    S D TI  ++ ++       T+    +G
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI--KVWNTSTCEFVRTLNGHKRG 180

Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378
           + C+    +L++  + +   +  ++     L         ++ +  + + +       ++
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240

Query: 379 QVYDLSSM---------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
           +V+DL +           C   L  HS  V  L           IV+ S D+++ +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ----FDEF-QIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (250), Expect = 2e-23
 Identities = 48/379 (12%), Positives = 102/379 (26%), Gaps = 31/379 (8%)

Query: 59  GSDTITALALSPDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPSGGL 116
             + I+  A + D   +    ++ E+ +++ S      +   K H+G   G+   P    
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
           + T G DR   VW + G          +   ++       ++     GS    + +    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 177 AKK----CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
            +     C        S V S+    +   L +   D    ++       +         
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
             +          S     +                 V     V + +AD        +S
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGS----RVAWVSHDSTVCLADADKKMAVATLAS 241

Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
           +      +                  L+    D   +L+T         +L    RL   
Sbjct: 242 ETLPLLAVTFITES-----------SLVAAGHDCFPVLFT---YDSAAGKLSFGGRLDVP 287

Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
            +                   N+++    + S+ + + + + H   V  +   +    K 
Sbjct: 288 KQSSQR------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341

Query: 413 -LIVTGSKDNSVRLWDSES 430
               T   D  + +WD  S
Sbjct: 342 SQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.4 bits (230), Expect = 7e-21
 Identities = 51/396 (12%), Positives = 110/396 (27%), Gaps = 42/396 (10%)

Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLI 204
           +S   ++ D  ++ +    ++  V +++    K   V  L +H  +VT +    D + ++
Sbjct: 10  ISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264
           + G D+   +W L+  + K T+    +  A   +        F      + I        
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY---- 123

Query: 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324
                          N    C + +K    T+            AA        +     
Sbjct: 124 -----------FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

Query: 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384
            +            K     L          +  + F       +A  ++   V + D  
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SANGSRVAWVSHDSTVCLADAD 231

Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444
                  LA  +  +L        +   L+  G  D    L+  +S        G +   
Sbjct: 232 KKMAVATLASETLPLLA---VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP 287

Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504
              +            ++    +       S+ +          + + H   ++ ++V  
Sbjct: 288 KQSSQR--------GLTARERFQNLDKKASSEGSAAA----GAGLDSLHKNSVSQISVLS 335

Query: 505 ND----SLVCTGSQDRTACVWRLPDLVSVVTFRGHK 536
                 S  CT   D    +W +  L S    +  K
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKDLK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.1 bits (198), Expect = 7e-17
 Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 33/283 (11%)

Query: 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFS 450
           A HS +V  +   A +  +  I     ++ V +++      V V     H G V  V ++
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
               N +V+  +D    VW+         +    K   V+    +    +  APN+    
Sbjct: 61  PD-SNRIVTCGTDRNAYVWTL--------KGRTWKPTLVILRINRAARCVRWAPNEKKFA 111

Query: 511 TGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
            GS  R   +                +  +  + S+++ P   ++   S D   +I+S  
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

Query: 567 DGS------------------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608
                                 +         V    F   G+++     D  V L    
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
               +AT       + A+    ++ + A G     V   +DS 
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.0 bits (172), Expect = 1e-13
 Identities = 43/342 (12%), Positives = 97/342 (28%), Gaps = 66/342 (19%)

Query: 367 QYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
             +A+  N  +V +Y+ S       + L  H+  V  +     +     IVT   D +  
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV---DWAPDSNRIVTCGTDRNAY 76

Query: 425 L----------------------------------------------WDSESRCCVGVGT 438
           +                                              ++ E+   V    
Sbjct: 77  VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136

Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQP--------MNLKAKAV 489
                   ++      + L++  S     +++S      +               +    
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196

Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549
            ++    ++ +  + N S V   S D T C+      ++V T       + +V F   + 
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ES 255

Query: 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
            ++ A  D    +++    +   +F G      ++S     A+      D          
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-GSA 314

Query: 610 GECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLW 647
                    H++ +  ++V      K   F T G D  +++W
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 54/370 (14%), Positives = 105/370 (28%), Gaps = 52/370 (14%)

Query: 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325
                     V ++            +      E+ +     T     P +  ++    D
Sbjct: 21  QIAICPNNHEVHIYEKSG--------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 385
           +   ++T      K   +IL                    E+  AV +    + +     
Sbjct: 73  RNAYVWTLKGRTWKPTLVIL------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126

Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKI-LIVTGSKDNSVRLWDSESR------------- 431
            +  +V     + +              L+  GS D   R++ +  +             
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186

Query: 432 -----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486
                  +   +   G V  V FS    + +   S D T+ +   D     A        
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATLAS---- 241

Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
                     + ++      SLV  G  D    ++        ++F G            
Sbjct: 242 ------ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 547 VDQVVITASGDKTIKIW-SISDGSCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGL 601
           +       + DK      S + G+ L +   H +SV + S L+ G    +Q  + G DG 
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352

Query: 602 VKLWTVRTGE 611
           + +W VR+ E
Sbjct: 353 MSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 38/283 (13%), Positives = 77/283 (27%), Gaps = 19/283 (6%)

Query: 9   SYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIK--STIEGGSDTITA 65
           S+  EP+            + D + IA       ++I + S         ++  +  +T 
Sbjct: 4   SFLVEPISC-------HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTG 56

Query: 66  LALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGAD 123
           +  +PD   + + G  R   VW L     K        +  A  +   P+    A     
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116

Query: 124 RKVLVWDVDG--GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181
           R + +   +    +            + +      +  LL +GS D   R++    K+  
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV- 175

Query: 182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241
               +     T          L+         +  +   +    V        VC     
Sbjct: 176 ----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284
                   +     +       E   +  G      ++  DSA
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (238), Expect = 4e-22
 Identities = 51/343 (14%), Positives = 94/343 (27%), Gaps = 21/343 (6%)

Query: 139 YFKGHKGVVSSILFHPDTDKSLL-FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197
           YF+G  G   +  FH   D  +       DA +        + + TL+ H   V ++ I+
Sbjct: 2   YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM------VEAVCAIPPGSAFDSFLSSY 251
           +    + + G    V +WD+     K  V   +       + +   +P G          
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEA 118

Query: 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311
           +  +I             +          A S       S     +  + D         
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178

Query: 312 VLPSNQGLLCVTADQQLLLYTTV----EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367
                 G  C+          T      V    +      +   +  +I  L +    E 
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238

Query: 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
                            +    Y L  H   VL       +      V+  KDN +  W 
Sbjct: 239 L--AVGMESSNVEVLHVNKPDKYQLHLHESCVLS---LKFAYCGKWFVSTGKDNLLNAWR 293

Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           +     +   +    +V +   S     ++V+GS D    V+ 
Sbjct: 294 TPYGASIFQ-SKESSSVLSCDISVD-DKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 6e-17
 Identities = 43/293 (14%), Positives = 83/293 (28%), Gaps = 47/293 (16%)

Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-----GTGHMGAVGAVA 448
            H E+V  +    +S+    + TG     V++WD                     + +  
Sbjct: 49  NHGEVVCAV---TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------------- 492
                   L+ G    T+ +W     +   +  +   A A  A                 
Sbjct: 105 LLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163

Query: 493 ------------------HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
                             H    + + ++ + + + TG  D T   W        +    
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHD 222

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
               I+S+ + P  + +        +++  ++          H S VL   F   G   V
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFV 281

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
           S G D L+  W    G  I    K    + +  +    +   TG  D    ++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 4e-16
 Identities = 47/334 (14%), Positives = 91/334 (27%), Gaps = 14/334 (4%)

Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
              PA        G +         ++   +           H  VV ++     T    
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RH 65

Query: 161 LFSGSDDATVRVWDL-----LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
           +++G     V+VWD+      +           + + S  +  DG TLI  G    +++W
Sbjct: 66  VYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

Query: 216 DLRDYSCKLT--VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273
           DL   + ++   + +        AI P S       S     +        +        
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184

Query: 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333
           G   +  ++          D T+        R             L      + L +   
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244

Query: 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393
               E        K  +  +E  +         ++         +  +     +  +   
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303

Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
             S  VL    C +S     IVTGS D    +++
Sbjct: 304 KESSSVLS---CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 4e-15
 Identities = 41/326 (12%), Positives = 91/326 (27%), Gaps = 47/326 (14%)

Query: 322 VTADQQLLLYTTVEVPEKKMELILSKRLV---GYNEEILDLKFLGEEEQYLAVATNIEQV 378
           VTAD Q+              +    R +    + E +  +       +++        V
Sbjct: 17  VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTI-SNPTRHVYTGGK-GCV 74

Query: 379 QVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
           +V+D+S       ++          +     C L      ++ G + +++ +WD  +   
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRS---CKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGS-------------------------------- 461
                    A    A +    + +                                    
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191

Query: 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
           S+   K+W+    +      +    +         I SL   P    +  G +     V 
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251

Query: 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581
            +           H+  + S++F+   +  ++   D  +  W    G+ +      +SSV
Sbjct: 252 HVNK-PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSV 309

Query: 582 LRASFLTRGAQIVSCGADGLVKLWTV 607
           L          IV+   D    ++ V
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 6e-15
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 94  CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH 153
                         +   P+G  LA       V V  V+          H+  V S+ F 
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFA 274

Query: 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
                    S   D  +  W       +    K  S V S  I+ D   +++   DK   
Sbjct: 275 YCGK--WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 214 LWDL 217
           ++++
Sbjct: 332 VYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 9e-15
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 4/116 (3%)

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
             I +L   P  + L     S  + V  ++          H+   + +     G    + 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283

Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
           G D  +  W    G            V S       D   + +GS D    V++++
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV--DDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-10
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 37/296 (12%)

Query: 60  SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR-----SWKGHDGPAIGMACHPSG 114
            + + A+ +S   + +++ G    ++VWD+S                D         P G
Sbjct: 51  GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
             L   G    + +WD+         +      +        D  + FS   D  + VWD
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
           L  +  V     H    + + I++DG+ L + G D  V  WDLR+            + +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 235 VCAIPPGSAFD-------------SFLSSYNQQTIKKKRRSLEIH-----FITVGERGIV 276
           +   P G                 +    Y     +    SL+       F++ G+  ++
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 277 RMWNADS-ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331
             W     A +++ K S                +  +   ++ ++  + D++  +Y
Sbjct: 290 NAWRTPYGASIFQSKESS------------SVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 41/301 (13%), Positives = 76/301 (25%), Gaps = 68/301 (22%)

Query: 25  LVVSSDGSFIACACGESINIVDLSNASIKSTIE-----GGSDTITALALSPDDKLLFSSG 79
           + +S+    +       + + D+S+   KS +         + I +  L PD   L   G
Sbjct: 57  VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 80  HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139
            +  + +WDL+        +         A   S              +   D    T  
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176

Query: 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------- 185
            +       +       D + L++G  D TVR WDL   + +   D              
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236

Query: 186 --------------------------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
                                      H S V S+     G   +S G+D ++N W    
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296

Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279
            +          V +                               + +T        ++
Sbjct: 297 GASIFQSKESSSVLSCDISVDDK-----------------------YIVTGSGDKKATVY 333

Query: 280 N 280
            
Sbjct: 334 E 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 9e-10
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 6/137 (4%)

Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
             K   S  V  +  +              +P     +    H   + +V  S   + V 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY 67

Query: 553 TASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
           T      +K+W IS                 + +     L  G  ++  G    + +W +
Sbjct: 68  TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

Query: 608 RTGECIATYDKHEDKIW 624
                    +       
Sbjct: 127 AAPTPRIKAELTSSAPA 143

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 36/341 (10%), Positives = 87/341 (25%), Gaps = 29/341 (8%)

Query: 59  GSDTITALALSPDDKLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117
           GS    +  ++ D ++          I        + + +   H      +        +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 118 ATAGADRKVLVWDVDGGFC-----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
            T G    V VWD+                    + S    P  D   L  G + +T+ +
Sbjct: 67  YT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSI 123

Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
           WDL A       +   S     A+     + +        N+     ++  L        
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183

Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV----------RMWNAD 282
           +    I   +      +     T++                  +           +    
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243

Query: 283 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME 342
            +   E    +    +++   +    +       +  +    D  L  + T         
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-----PYGA 298

Query: 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
            I        +  +L       +++Y+   +  ++  VY++
Sbjct: 299 SI---FQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 25  LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
           L  +  G +      +  +N       +        S ++ +  +S DDK + +    ++
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 84  IRVWDL 89
             V+++
Sbjct: 330 ATVYEV 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 30/316 (9%), Positives = 72/316 (22%), Gaps = 30/316 (9%)

Query: 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425
             Y+      +++ V D   M+   V+         +       G+I   T +K  S+  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 426 WDSESRCCVGVGTGHMG-----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 480
            D  +   +G            ++   A S   +   +  S             +  A  
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG-- 538
                ++       + I  LA A + S +    +D          LV     +  +    
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 539 -------------------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHT 578
                                              +    +    +  G           
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638
                 +      +        +++ + +     I          +++ V         G
Sbjct: 241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297

Query: 639 GSDALVNLWHDSTAAE 654
           G+   +  +   T  +
Sbjct: 298 GALGDLAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 26/396 (6%), Positives = 72/396 (18%), Gaps = 68/396 (17%)

Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTL-ISAGRDKVVNL 214
           +  + + +    + V D         +             +   G     +  + + +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274
            DL        +                +      S + +T+           I      
Sbjct: 61  IDLVTGETLGRIDLS------TPEERVKSLFGAALSPDGKTL----------AIYESPVR 104

Query: 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334
           +                ++     +  ++ R  T          L  +  D  ++     
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA- 163

Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
                                       G   +   + +               +     
Sbjct: 164 ----------------------------GTLVEDKPIQS---WEAETYAQPDVLAVWNQH 192

Query: 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
            S  V+                 +    +   D E+          M            +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
                  + + ++ +  +  +     P                 S+ V+ + S V  G  
Sbjct: 253 TRAF--GAYNVLESFDLEKNASIKRVP-----------LPHSYYSVNVSTDGSTVWLGGA 299

Query: 515 DRTACVWRLPDLVSVVTFR----GHKRGIWSVEFSP 546
                 +    L                     F+ 
Sbjct: 300 LGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (158), Expect = 7e-12
 Identities = 34/388 (8%), Positives = 88/388 (22%), Gaps = 63/388 (16%)

Query: 73  KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132
             + +     ++ V D   +   +     D                              
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIAD------------------------------ 31

Query: 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH----- 187
                             +  P   +    + +   ++   DL+  + +  +D       
Sbjct: 32  ----------AGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80

Query: 188 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247
              +   A++ DG TL        + L        ++ +   E +    A          
Sbjct: 81  VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML 140

Query: 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 307
             + +   +    R L +     G   +V      S         DV   +   +S    
Sbjct: 141 AWARDGSKLYGLGRDLHVMDPEAGT--LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM 198

Query: 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367
                              +    T +   + +   +  + +   +              
Sbjct: 199 ATPFYTARKDIDPADPTAYR----TGLLTMDLETGEMAMREVRIMDVFYFSTAVNP---A 251

Query: 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
                     ++ +DL   +    +         +    +S+    +  G     +  +D
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSV---NVSTDGSTVWLGGALGDLAAYD 307

Query: 428 SESRCCVGV----GTGHMGAVGAVAFSK 451
           +E+    G     G   M       F++
Sbjct: 308 AETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 23/188 (12%)

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP------AIGMACHPSG 114
             IT LA + D   L+     R++ V D      +                  +A     
Sbjct: 135 RQITMLAWARDGSKLYG--LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHK------GVVSSILFHPDTD--------KSL 160
                          D+D    T Y  G        G ++                  + 
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220
             +      +  +DL     +  +        S+ +++DGST+   G    +  +D    
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

Query: 221 SCKLTVPT 228
             K  V  
Sbjct: 312 EKKGQVDL 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 4/137 (2%)

Query: 59  GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118
           G           D      + +   +   DL T +                        A
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178
             GA   +  +D++                S+    D   S ++ G     +  +D    
Sbjct: 256 -FGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETL 311

Query: 179 KCVATLDKHFSRVTSMA 195
           +    +D   +   S+A
Sbjct: 312 EKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 26/293 (8%), Positives = 68/293 (23%), Gaps = 39/293 (13%)

Query: 33  FIACACGESINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFSSG-HSREIRVWDL 89
            +A A  + + ++D    ++   I       T     ++P  ++ +++   S  +   DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 90  STLKCLRSWKGHDGPAIG-----MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--- 141
            T + L                  A  P G  LA   +  ++ +   +            
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 142 --------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC------------- 180
                        ++ + +  D  K                 L +               
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

Query: 181 ------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
                                   D            +   DL      +       V  
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287
                  +   +F +    ++   ++ +  I  + +         + D + ++
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVW 295

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 42/336 (12%), Positives = 85/336 (25%), Gaps = 32/336 (9%)

Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378
           +L      +L++  T     +KM +     +       +            A     E +
Sbjct: 4   ILAPARPDKLVVIDT-----EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58

Query: 379 QVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--- 433
              DL +        L+   E V  L   ALS     +        + L   E +     
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 434 --------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS------FDGLSDDAE 479
                             +  +A+++        G   H +   +          S +AE
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

Query: 480 QPMNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRG 534
                   AV                   +       +         L    +++   R 
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
                +S   +P             ++ + +   + +K       S    +  T G+ + 
Sbjct: 239 MDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVW 295

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 630
             GA G +  +   T E     D   +   +LA  +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 7e-08
 Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 26  VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
              +     A      +   DL   +    +     +  ++ +S D   ++  G   ++ 
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304

Query: 86  VWDLSTLKCLRSWKGHDGPAIGMA 109
            +D  TL+           ++ +A
Sbjct: 305 AYDAETLEKKGQVDLPGNASMSLA 328

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 28/378 (7%), Positives = 92/378 (24%), Gaps = 36/378 (9%)

Query: 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATV 170
           P  G L    +  +  + DV G +           +  +    D  K     G+ +   +
Sbjct: 12  PLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVAFIHGTREGDFL 68

Query: 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230
            ++D          +++   V +M +  +                 + +   ++     E
Sbjct: 69  GIYD-YRTGKAEKFEENLGNVFAMGVDRN------------GKFAVVANDRFEIMTVDLE 115

Query: 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290
             +         A  +  +  +          L+           + +++ +   ++   
Sbjct: 116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 175

Query: 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350
           + +        D             ++ L  ++          V +      +     + 
Sbjct: 176 TENSHDYAPAFD-----------ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224

Query: 351 GYNEEILDLKFLGEEEQYLAVA---TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 407
                    K +       A      ++ +             ++      +L       
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467
                      +   +  +D ++R      T     +  +  S   +  ++    D  I 
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSAD-RKTVMVRKDDGKIY 339

Query: 468 VWSFDGLSDDAEQPMNLK 485
            +  +   D+     + +
Sbjct: 340 TFPLEKPEDERTVETDKR 357

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.8 bits (192), Expect = 4e-16
 Identities = 18/213 (8%), Positives = 43/213 (20%), Gaps = 16/213 (7%)

Query: 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477
               ++ ++D E R      T +         +      L   S            L+  
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------ACVWRLPDLVSVV 530
            E          +       N   + P       G  D                D   ++
Sbjct: 214 FEVVSKPFV---IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270

Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
                                  A     +  + +             +++         
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADR 326

Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKI 623
             ++    DG +  + +   E   T +  +  +
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 2e-14
 Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 16/171 (9%)

Query: 70  PDDKLLFSSGHSREIRVWDLSTLKC-------LRSWKGHDGPAIGMACHPSGGLLATA-- 120
            D K L+   +       D   L                 G        P          
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 121 ---GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177
                 ++    +VD G           ++   +       +      +   +  +D+  
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
           +K    + +  + +T + +++D  T++    D  +  + L     + TV T
Sbjct: 308 RK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 70.7 bits (171), Expect = 2e-13
 Identities = 11/173 (6%), Positives = 38/173 (21%), Gaps = 7/173 (4%)

Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
            +   S  +     D                +  +  S      +    +    +    D
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 473 GLSDDAEQPM---NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 529
                +   +   + +    + +     +        +      +      + +      
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--- 308

Query: 530 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582
                 K  +  +  S   + V+    D  I  + +      +T E     ++
Sbjct: 309 -KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 68.4 bits (165), Expect = 9e-13
 Identities = 15/144 (10%), Positives = 34/144 (23%), Gaps = 13/144 (9%)

Query: 55  TIEGGSDTITALALSPDDKLLFSSGHSRE-------IRVWDLSTLKCLRSWKGHDGPAIG 107
            I     +     L P      +  +              D    + +   +        
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281

Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
                       A     +L +DV     T      K  ++ +    D  +  +    DD
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSAD--RKTVMVRKDD 335

Query: 168 ATVRVWDLLAKKCVATLDKHFSRV 191
             +  + L   +   T++     +
Sbjct: 336 GKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.2 bits (136), Expect = 4e-09
 Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 14/204 (6%)

Query: 29  SDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--REIRV 86
            DG  IA        I D+S   +    E     I  +    D K+ F  G      + +
Sbjct: 13  LDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLR--IRYVRRGGDTKVAFIHGTREGDFLGI 70

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
           +D  T      ++ + G    M    +G     A    +++  D++ G  T   +  + +
Sbjct: 71  YDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129

Query: 147 VSSILFHPDTDKSLLFS--------GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198
           ++      ++               G     + V+D+  +K  A   ++     + A  +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDA 188

Query: 199 DGSTLISAGRDKVVNLWDLRDYSC 222
           D   L       +    D    + 
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNF 212

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 12/158 (7%), Positives = 28/158 (17%), Gaps = 18/158 (11%)

Query: 504 PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVVITASG 556
            +   +   S            L                       +  P          
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 557 DKTIKIW-------SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
           D                D   +   E               A        G++  + V+T
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
            +        ++ +  L +    +       D  +  +
Sbjct: 308 RKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 599
           ++ +FSP+D  +I         I  +S    LK        +               G  
Sbjct: 6   FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 600 G--LVKLWTVRTGECIATYDKHEDKIWALA 627
               + ++  RTG+    ++++   ++A+ 
Sbjct: 64  EGDFLGIYDYRTGK-AEKFEENLGNVFAMG 92

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 28  SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
               ++   A  +  +   D+        +    + +T L LS D K +       +I  
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 87  WDLSTLKCLRS 97
           + L   +  R+
Sbjct: 341 FPLEKPEDERT 351

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.6 bits (194), Expect = 1e-16
 Identities = 44/292 (15%), Positives = 89/292 (30%), Gaps = 22/292 (7%)

Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426
             +        V    + S++ + +   HS           S       +G    +VR+W
Sbjct: 30  DKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTV---AKTSPSGYYCASGDVHGNVRIW 85

Query: 427 --DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
                +           G V  +++  + +     G                        
Sbjct: 86  DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG- 144

Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544
                        +          + +GS D T  ++  P      TF  H + + SV +
Sbjct: 145 -------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 545 SPVDQVVITASGDKTIKIWSISDGSCLKT-------FEGHTSSVLRASFLTRGAQIVSCG 597
           +P   +  +  GD TI +++  DG+              H+ SV   ++   G +I S  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 598 ADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTEMFATGGSDALVNLWH 648
           AD  +K+W V T +   T       +   L +    +   +  ++  +N  +
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 74.6 bits (181), Expect = 5e-15
 Identities = 37/332 (11%), Positives = 84/332 (25%), Gaps = 40/332 (12%)

Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
           +G    +   P  DK  +   +   +V    + +        +H  + T    +  G   
Sbjct: 17  RGTAVVLGNTPAGDK--IQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73

Query: 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263
            S      V +WD    +         +++    +  G   D    S +++         
Sbjct: 74  ASGDVHGNVRIWDTTQTTH--------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125

Query: 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323
               + + + G         A          +  F +       T A             
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185

Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
            +    +++    P+  +               +D    G  E                 
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245

Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGH 440
            S   + + +                        S D ++++W+  +        VGT  
Sbjct: 246 WSPDGTKIASA-----------------------SADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
                 + ++K     LVS S++  I   + +
Sbjct: 283 EDQQLGIIWTK---QALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 38/311 (12%), Positives = 74/311 (23%), Gaps = 75/311 (24%)

Query: 25  LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84
           L  +  G  I    G S+  V + + +        S   T    SP      S      +
Sbjct: 23  LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82

Query: 85  RVW--DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG 142
           R+W    +T     +     GP   ++       +A  G  R+           T     
Sbjct: 83  RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL 142

Query: 143 HKGVVSSILFHPDTDKSLL----------------------------------------- 161
                +         +                                            
Sbjct: 143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 202

Query: 162 --FSGSDDATVRVWDLLAKKCVAT-------LDKHFSRVTSMAITSDGSTLISAGRDKVV 212
              S   D T+ +++ +                 H   V  +  + DG+ + SA  DK +
Sbjct: 203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 262

Query: 213 NLWDLRDYSCKLTVPTYEMVE-AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271
            +W++     + T+P    +E     I                             +++ 
Sbjct: 263 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ----------------------ALVSIS 300

Query: 272 ERGIVRMWNAD 282
             G +   N +
Sbjct: 301 ANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.4 bits (152), Expect = 3e-11
 Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 90  STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
           +    L       G A+ +   P+G  +        V    V     T  +  H    + 
Sbjct: 7   ALFPSLPRTAR--GTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTV 63

Query: 150 ILFHPDTDKSLLFSGSDDATVRVW 173
               P        SG     VR+W
Sbjct: 64  AKTSPSGY--YCASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 5e-11
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 6/107 (5%)

Query: 50  ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109
            S+  T  G   T   L  +P    +    +   +    + +L     +  H        
Sbjct: 10  PSLPRTARG---TAVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAK 65

Query: 110 CHPSGGLLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHP 154
             PSG   A+      V +WD                G V  I +  
Sbjct: 66  TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 531 TFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589
           +     RG    +  +P    +   +G  ++    +   +  + +  H+     A     
Sbjct: 11  SLPRTARGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 590 GAQIVSCGADGLVKLWTVRTGEC 612
           G    S    G V++W       
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558
            L   P    +   +   +     +  L     +  H       + SP      +     
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 559 TIKIWSISDGSC 570
            ++IW  +  + 
Sbjct: 81  NVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (125), Expect = 7e-08
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 15/249 (6%)

Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
           G  +        SV      S     + T H         S     +  SG     +++W
Sbjct: 29  GDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIW 85

Query: 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 529
                       +      V +   KDI+  + +   + V  G +             + 
Sbjct: 86  DTTQ-----TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

Query: 530 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589
                 +              +I+ S D T+ I+         TF  HT  V    +   
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKTEMFATGGSDA 642
           G+   S G DG + L+    G     ++            ++ L         A+  +D 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 643 LVNLWHDST 651
            + +W+ +T
Sbjct: 261 TIKIWNVAT 269

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 2/88 (2%)

Query: 564 SISDGSCLKTFEGHTSSVLRA-SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
             S  +   +                 G +I  C     V    V +      Y +H  +
Sbjct: 2   EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQ 60

Query: 623 IWALAVGKKTEMFATGGSDALVNLWHDS 650
                        A+G     V +W  +
Sbjct: 61  TTVAKTSPSGYYCASGDVHGNVRIWDTT 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (194), Expect = 2e-16
 Identities = 31/323 (9%), Positives = 72/323 (22%), Gaps = 65/323 (20%)

Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---GTGHMG 442
           M    +     + +  +    +   K L++  S D S+ ++  + +           +  
Sbjct: 1   MQIVQIEQAPKDYISDI---KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57

Query: 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG----------------------------- 473
            +    F       +  G+    I      G                             
Sbjct: 58  PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA 117

Query: 474 ----------LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523
                        +    +                   +  N S +  G  +     +RL
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 524 PDLVSVVTFR----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------- 569
           P                +           +    +S D  + +    D            
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 570 -----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624
                           V    F  R   + + G+DG++  W ++T + I  + K  ++  
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296

Query: 625 ALAVGKKTEMFATGGSDALVNLW 647
            + +     +     SD      
Sbjct: 297 VVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 5e-14
 Identities = 47/332 (14%), Positives = 98/332 (29%), Gaps = 35/332 (10%)

Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
           PS   LL  + D  L +Y   ++  K ++L    + + Y   +L   F+   +  + V T
Sbjct: 21  PSKSLLLITSWDGSLTVYK-FDIQAKNVDL---LQSLRYKHPLLCCNFIDNTDLQIYVGT 76

Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
              ++   DL        L  +   +     C     K++  +      V    +     
Sbjct: 77  VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136

Query: 434 VGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490
           + V    + +      +       + L+ G ++  ++ +      DD             
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE------S 190

Query: 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT---------------FRGH 535
               +  +   +          S D    V    D                         
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIV 594
              + S+EFSP  + + TA  D  I  W++     +K F   +  SV++ +       + 
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC--SDNILC 308

Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626
              +D   K           T + +   I+ +
Sbjct: 309 LATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 6e-14
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 22/159 (13%)

Query: 80  HSREIRVWDLSTLKCLRSWKGHDGPAIGM----ACHPSGGLLATAGADRKVLVWDVDGGF 135
           ++ +++ + L   +         G    +             A +  D +V V   D   
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 136 ---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
                                     V+SI F P      L++   D  +  W+L  +K 
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWNLQTRKK 285

Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
           +    K  +  + + I    + L  A  D         D
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 1e-13
 Identities = 37/343 (10%), Positives = 88/343 (25%), Gaps = 42/343 (12%)

Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----EMVEA 234
           + V         ++ + I    S L+    D  + ++     +  + +         +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294
              I          +   +        S     +T  E  +               +S  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 295 TI-------SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347
            +       ++           +        +  +  +   L+        +   L L +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 348 RLV------GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-------- 393
                    G   +I D+  L +E++  A ++   +V V         Y  +        
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 394 ----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
                 + +   +++   S     + T   D  +  W+ ++R  +            V  
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKI 300

Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLS-----------DDAEQP 481
           +    N L   +SD T K  +    +            D E P
Sbjct: 301 ACS-DNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 4e-11
 Identities = 39/348 (11%), Positives = 96/348 (27%), Gaps = 40/348 (11%)

Query: 92  LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVS 148
           ++ ++  +        +   PS  LL     D  + V+  D             +K  + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 149 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208
              F  +TD  +         ++V  + +    A  +   +             LI+A  
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 268
           D ++ + D R+Y   +                        ++   +       +     I
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNS----------------NNTKVKNKIFTMDTNSSRLI 164

Query: 269 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328
                  V+ +             D     E     +    A +    +G  C + D ++
Sbjct: 165 VGMNNSQVQWFR------LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 329 LLY-----TTVEVPEKKMELILSK---RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380
            +             K+      +   +       +  ++F     ++L  A +   +  
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRHKFLYTAGSDGIISC 277

Query: 381 YDLSSMSCSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWD 427
           ++L +       A  +E         ++ S  IL    + D++ +   
Sbjct: 278 WNLQTRKKIKNFAKFNEDS----VVKIACSDNIL-CLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 9e-11
 Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 9/180 (5%)

Query: 55  TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC---LRSWKGHDGPAIGMACH 111
             +   D I+ + + P   LL  +     + V+          L     +  P +     
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
            +  L    G  +  ++     G  +     +      I          L + S D  + 
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 172 VWDLLAKKCVATLDKHFSRV------TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225
           V D           K+ +            + ++ S LI    +  V  + L        
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 22/141 (15%)

Query: 69  SPDDKLLFSSGHSREIRVWDLST---------------LKCLRSWKGHDGPAIGMACHPS 113
             + +    S     + V                     +          P   +   P 
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262

Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
              L TAG+D  +  W++        F       S +      +  +L   + D T +  
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN--ILCLATSDDTFKTN 319

Query: 174 DLLAKKCVATLDKHFSRVTSM 194
                    T++ + S +  +
Sbjct: 320 ----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 57  EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL 116
              +  + ++  SP  K L+++G    I  W+L T K ++++   +  ++ +    S  +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIACSDNI 306

Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150
           L  A +D                 + +   +  I
Sbjct: 307 LCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 5/82 (6%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 626
            ++  +     +     +   + ++    DG + ++               +++  +   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 627 AVGKKTEMFATGGSDALVNLWH 648
                T++    G+     L  
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKV 84

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 35/359 (9%), Positives = 82/359 (22%), Gaps = 27/359 (7%)

Query: 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGS 165
           G A       +        + V DV             K    + +  PD +++     +
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNN 59

Query: 166 DDATVRVWDLLAKKCVATLD------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
               +   DL   K     +      +    + S AI+ DG  + +              
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFD---SFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
              +L V +         +             ++ +           ++   T      +
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336
            + N +                                 ++                   
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY-----GYLS 234

Query: 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGH 395
            + K     ++      E         ++   +    N  ++  YDL            H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAANLDH 292

Query: 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSK 451
           +    C+   A       +  G   N + +++ ++   V    +  G M       F +
Sbjct: 293 T--YYCV---AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 71.7 bits (174), Expect = 6e-14
 Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 26/241 (10%)

Query: 66  LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGG-LLATAGAD 123
            AL    + +  + +   + V D+++    +S    D          P            
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 124 RKVLVWDVDGGFCTHYF------KGHKGVVSSILFHP----------DTDKSLLFSGSDD 167
             +   D+D    T +             + S    P           T +         
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 168 ATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225
             + V+          +       +V  M    DGS  ++      +++   +     + 
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK---YTVA 178

Query: 226 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQT---IKKKRRSLEIHFITVGERGIVRMWNAD 282
           +P         + P    F    S  ++ +      + +  +    T          +  
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 283 S 283
           +
Sbjct: 239 T 239

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 68.6 bits (166), Expect = 7e-13
 Identities = 21/214 (9%), Positives = 51/214 (23%), Gaps = 33/214 (15%)

Query: 42  INIVDLSNASIKSTIEGGS--DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99
           + +   ++      +        +  +  + D  L  +      I   D+ T K   +  
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVALP 180

Query: 100 GHDGPAIGMACH-------------------------PSGGLLATAGADRKVLVWDVDGG 134
             +    G +                                 ATA      L  D+  G
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194
                       +         D + ++   +   +  +DL  +K +   +        +
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAAN-LDHTYYCV 297

Query: 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
           A    G  L   G    + +++         +  
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 36/398 (9%), Positives = 91/398 (22%), Gaps = 55/398 (13%)

Query: 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253
            A+ +    +I       +++ D+   +          V   C +P      + + + + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDT----------VYKSCVMPDKFGPGTAMMAPDN 51

Query: 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313
           +T           ++     G +   + D+            +S    +  R   +  + 
Sbjct: 52  RTA----------YVLNNHYGDIYGIDLDTCKNTFH----ANLSSVPGEVGRSMYSFAIS 97

Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
           P     +  T +    L     V   ++E+  +        E   ++      Q   +  
Sbjct: 98  PDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTAD----GLEAKPVRTFPMPRQVYLMRA 152

Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
             +         +    V  G   + L L               S  + +  W  +S   
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK-------GYSAPDVLYFWPHQSPRH 205

Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
                  +                 +    +                          A  
Sbjct: 206 EFSMLYTIARFKDDKQD------PATADLLYGYLSVDLK---------TGKTHTQEFADL 250

Query: 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
            +   +   +P D     G  +     + L     +          + V F      +  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYL 308

Query: 554 ASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTR 589
                 + +++      +K  +  G   S        R
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 26  VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
           + S             +   DL    +         T   +A       L+  G   ++ 
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLA 316

Query: 86  VWDLSTLKCLRSWKGHDGP 104
           V++  TL+ +++ K   G 
Sbjct: 317 VFNPDTLEKVKNIKLPGGD 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 16/224 (7%), Positives = 44/224 (19%), Gaps = 16/224 (7%)

Query: 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI- 466
            + ++      K   + ++ +                            L     D    
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 467 ------KVWSFDGLSDDAEQPMNLKAKAVVAAHGKD------INSLAVAPNDSLVCTGSQ 514
                    +    + + +                               +     T   
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 515 DRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573
                   L         F       ++   SP D   I    +  +  + +     +K 
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287

Query: 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
                 +    +F  +G ++   G    + ++   T E +    
Sbjct: 288 AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 4/114 (3%)

Query: 42  INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101
              VDL      +        +    L          G    +  +DL   K +++    
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-L 290

Query: 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILF 152
           D     +A    G  L   G    + V++ D        K   G     +  +F
Sbjct: 291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVF 344

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (190), Expect = 9e-16
 Identities = 44/418 (10%), Positives = 101/418 (24%), Gaps = 64/418 (15%)

Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR----- 190
             +  K H   + S+            S S D  ++VWD          DK +S      
Sbjct: 6   TANAGKAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 242
                           +   + +      +  + +        V   ++      +   S
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 243 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS------ACLYEQKSSDVTI 296
            +     + N + +           +    +G   +W          +       +    
Sbjct: 122 FWALKWGASNDRLLSH-------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174

Query: 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 356
                       A +V  S +GL+    +   +  + +              ++  +  I
Sbjct: 175 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 357 LDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL- 413
             +KF  +         +     + +Y+         L+  +            S  ++ 
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 414 ---------IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
                    + +   D  +R WD +++  +     H   +               G S  
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA---VDEHGDSLA 351

Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522
              V+                    V    K   S   A  +  +C    DR+   +R
Sbjct: 352 EPGVFD-------------------VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (186), Expect = 3e-15
 Identities = 38/394 (9%), Positives = 106/394 (26%), Gaps = 76/394 (19%)

Query: 312 VLPSNQGLLCVTADQQLLLY-----TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366
           V   N   +  + D  L ++           +K     + K  + + + +  ++    E 
Sbjct: 20  VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79

Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL------------CLDTCALSSGKILI 414
             +A  +    +  Y ++    +  +      +L                         +
Sbjct: 80  CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139

Query: 415 VTGSKDNSVRLWD------------------SESRCCVGVGTGHMGAVGAVAFSKKLQNF 456
           V      +  +W                    E +  V           +V  S++    
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GL 197

Query: 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516
           + +G ++ T+++              N +++  +  +   I S+  +P  SL+       
Sbjct: 198 IATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 517 TACVWRLPD----------------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560
           +     L +                  + +    H   + S+ F+   + + +A  D  +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 561 KIWSISDGSCLKTFEGHTSSVLRA----SFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
           + W +     + T   H   +       +    G  +   G      ++ V+        
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK-------- 359

Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
              +    +       E       D  +  + ++
Sbjct: 360 -FLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 1e-12
 Identities = 25/213 (11%), Positives = 50/213 (23%), Gaps = 47/213 (22%)

Query: 54  STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACH- 111
           +  +     I +++         S      ++VWD   L       K +         H 
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 112 -----------PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
                          L+AT      +L + +     T      K  +        +  +L
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 161 -------------LFSGSDDATVRVWDLLAKK------------------CVATLDKHFS 189
                        L +     T  +W                         V +      
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
             TS+ I+  G  + +   +  V + +L     
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRP 217

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 2e-07
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 21/133 (15%)

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
               + +       H    + ++ + SG  L +AG D K+  WDV           H   
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 147 VS----SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST 202
           +      +             G   A   V+D      V  L K      S        +
Sbjct: 334 IEIEEDILAVDEH--------GDSLAEPGVFD------VKFLKK---GWRSGMGADLNES 376

Query: 203 LISAGRDKVVNLW 215
           L     D+ +  +
Sbjct: 377 LCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 60  SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP----AIGMACHPSGG 115
           S  + +L+ +   + L S+G   ++R WD+ T + + +   H          +A    G 
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
            LA  G      V+DV         KG +  + +     D ++SL      D ++R +
Sbjct: 349 SLAEPG------VFDVK-----FLKKGWRSGMGA-----DLNESLC-CVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 38/316 (12%), Positives = 81/316 (25%), Gaps = 66/316 (20%)

Query: 28  SSDGSFIACAC-GESINIVDLSNASIKSTIEGGSD----------TITALALSPDD---- 72
           + +   +A       +    ++       +               +  AL     +    
Sbjct: 76  AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135

Query: 73  -KLLFSSGHSREIRVWDLSTLK------------------CLRSWKGHDGPAIGMACHPS 113
              L ++       +W                         + S       A  +     
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195

Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF----HPDTDKSLLFSGSDDAT 169
           G L+AT   +  V + ++      + F+    ++++             SLL    D  +
Sbjct: 196 G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS 254

Query: 170 VRVW----------------DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
                                  + +       H S V S++    G TL SAG D  + 
Sbjct: 255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314

Query: 214 LWDLRDYSCKLTV-----PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH-- 266
            WD++      T+           + +     G +       ++ + +KK  RS      
Sbjct: 315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE-PGVFDVKFLKKGWRSGMGADL 373

Query: 267 ---FITVGERGIVRMW 279
                 V     +R +
Sbjct: 374 NESLCCVCLDRSIRWF 389

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.6 bits (186), Expect = 1e-15
 Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 6/296 (2%)

Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC-A 237
                   H   +T+++ ++DG TL SA  +  +N WD+         P           
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297
                   +     + + +      ++       +     +  A SA      ++     
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 357
                 K      +   S   L        +    +     K     +S+     +   +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417
                     +L       +V  Y +++          +     +   + S   + + TG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 418 SKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           S DNSV +W+         +  G   M +V +V +    +  +VS   D  IK W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 74.3 bits (180), Expect = 6e-15
 Identities = 30/300 (10%), Positives = 87/300 (29%), Gaps = 11/300 (3%)

Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVT 192
           G       GH   ++++    D     LFS   +  +  WD+          D H + +T
Sbjct: 2   GSIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252
            +  TS    L +   D  + +          +      + +       SA      +  
Sbjct: 60  GIKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 253 QQTIKKKRRSLEI-----HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 307
            + I              +  +       + + A      +     ++ +   +      
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367
            A     +                          EL  +     +  ++  + +  +  +
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
               + +   V V++++  S   ++   +  +  +++    +    IV+  +D++++ W+
Sbjct: 239 LATGSLD-NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.8 bits (171), Expect = 1e-13
 Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 42/298 (14%)

Query: 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVG 445
           S   V  GH++ +  L   + S+    + +   +  +  WD  +     V    H   + 
Sbjct: 3   SIDQVRYGHNKAITAL---SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
            +  +   +  L + S D  +KV    G   D+ + +  K  +         +       
Sbjct: 60  GIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
                            +    S V     K+ +          V   +    +     +
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 566 SDGSCLKTFEGHTSSVLRASFLTRGAQI-------------------------------- 593
                      +  + L A+  +R                                    
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 594 --VSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
              +   D  V +W +       I     H        +        + G D+ +  W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.0 bits (156), Expect = 6e-12
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWAL 626
           GS  +   GH  ++   S    G  + S  A+G +  W + TG     + D H   I  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 627 AVGKKTEMFATGGSDALVNLWHDST 651
               K ++F     D L  +    +
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.6 bits (155), Expect = 9e-12
 Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLD 403
           + +   G+N+ I  L     + + L  A     +  +D+S+   + V    H+ ++  + 
Sbjct: 4   IDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 404 TCALSSGKILIVTGSKDNSVRLWD---SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
           T      K  + T S D+ +++     S       V          +A S      + + 
Sbjct: 63  TT----SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 461 SS---------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
                             +     +                  V    G  ++ +    +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS---------------VEFSPVDQV 550
            + + + +           D    V                          V +SP +  
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 551 VITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
           + T S D ++ +W+++  S   +     H  S + +        IVS G D  +K W V
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 7e-11
 Identities = 29/123 (23%), Positives = 42/123 (34%)

Query: 51  SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110
           SI     G +  ITAL+ S D K LFS+     I  WD+ST    R +       I    
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 111 HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170
             S G L T   D  + V    G            + S  L    +    +   +    +
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 171 RVW 173
            ++
Sbjct: 123 AIY 125

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 3e-09
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATL 184
                +     H                  D   L +GS D +V VW++   +   +   
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
             H     +  I  + +T++SAG+D  +  W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 3e-09
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 94  CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSI 150
              SW  H      ++  P    LAT   D  V+VW+++                 V+S+
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275

Query: 151 LFHPDTDKSLLFSGSDDATVRVWDL 175
           ++  +   + + S   D+ ++ W++
Sbjct: 276 IWLNE---TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 5e-09
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 504 PNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
           P++  + TGS D +  VW +  P    ++    H     +      +  +++A  D  IK
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 562 IWSIS 566
            W++ 
Sbjct: 294 FWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 5e-08
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 70  PDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL 127
           PD+  L +      + VW+++      +     H   ++      +   + +AG D  + 
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 128 VWDV 131
            W+V
Sbjct: 294 FWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513
              L +GS D+++ VW+ +  SD            +  AH     +  +  N++ + +  
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSD--------HPIIIKGAHAMSSVNSVIWLNETTIVSAG 287

Query: 514 QDRTACVWRLP 524
           QD     W +P
Sbjct: 288 QDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 33  FIACACGESINIVDLSNASIKSTI--EGGSDTITALALSPDDKLLFSSGHSREIRVWDLS 90
               +   S+ + +++  S    I     + +     +  ++  + S+G    I+ W++ 
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.9 bits (187), Expect = 1e-15
 Identities = 38/337 (11%), Positives = 86/337 (25%), Gaps = 42/337 (12%)

Query: 103 GPAIGMACHPSGGLLATAGADRKVL-VWDVDGGF--CTHYFKGHKG-VVSSILFHPDTDK 158
                ++  P+   +A        +   D           F GH   VV+++ F P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 159 SLLFSGSDDATVRVWDLLAKKCVATL--------DKHFSRVTSMAITSDGSTLISAGRDK 210
             L SG +   V VW     K   ++              ++ ++   +G  L   G  +
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270
                 +   S           + + A     +      +          +         
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ--------- 188

Query: 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
                   +   ++     K        E       F                + + L  
Sbjct: 189 -----GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243

Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390
               + P +     LS                  + Q  A       ++V+D+++  C  
Sbjct: 244 IEDDQEPVQGGIFALSWL----------------DSQKFATVGADATIRVWDVTTSKCVQ 287

Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
                 + +       +++G   I++ S D ++  ++
Sbjct: 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (166), Expect = 5e-13
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 29/302 (9%)

Query: 367 QYLAVATNIEQVQVYDL----SSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDN 421
             +A     +   V  L    S +       GH S +V  +    +   +  + +G +  
Sbjct: 30  NAIAYPCG-KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESG 87

Query: 422 SVRLWDSESRCCV--------GVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTIKVWSFD 472
            V +W                       G +  +++  +  +  +V    D+     S+D
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147

Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
             +   E   + +                       V                  S  T 
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMT------VGDDGSVVFYQGPPFKFSASDRTH 201

Query: 533 RGHKRGIWSVEFSP----VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588
                 +  VEFSP        V +          S      ++  +      + A    
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261

Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG---KKTEMFATGGSDALVN 645
              +  + GAD  +++W V T +C+  +   + ++    VG          +   D  +N
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 646 LW 647
            +
Sbjct: 322 FY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 48  SNASIKSTIEGGSDT----ITALALSPD-DKLLFSSGHSREIRVWDLST--LKCLRSWKG 100
           S+ S+K  I     T     T L+  P  + + +  G S  +R  D     +  +  + G
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 101 HDGPAI-GMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYF--------KGHKGVVSS 149
           H    +  +   P      L +     KV+VW       ++          +   G +S 
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194
           I +  +  +  +     D         +   +  +  H  R+ + 
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 8e-11
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 94  CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS--SIL 151
            +   +      I           AT GAD  + VWDV    C   +   K  +    + 
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 152 FHPDTDKSLLFSGSDDATVRVWDL 175
                +   + S S D T+  ++L
Sbjct: 303 VVATGNG-RIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188
               G F  +     + V   I      D     +   DAT+RVWD+   KCV       
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293

Query: 189 SRVTSMAIT---SDGSTLISAGRDKVVNLWDL 217
            ++ +  +    +    +IS   D  +N ++L
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 70  PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA---CHPSGGLLATAGADRKV 126
            D +   + G    IRVWD++T KC++ W                   G + +   D  +
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 127 LVWDV 131
             +++
Sbjct: 321 NFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 9e-08
 Identities = 46/284 (16%), Positives = 76/284 (26%), Gaps = 18/284 (6%)

Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRC--CVGVGTG 439
           SS+S   ++           T          +     K   VR  D        V   TG
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 440 HMG-AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
           H    V  V FS      +L SG     + VW +    D     + +  K+        I
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPI 118

Query: 498 NSLAVAPNDS--LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
           + ++         V    +D            S+    GH + I +        +     
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178

Query: 556 GDKTIK----IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW----TV 607
           GD               +  +T     S V    F     + V               + 
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238

Query: 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
              + I    +             ++ FAT G+DA + +W  +T
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 56/346 (16%), Positives = 106/346 (30%), Gaps = 39/346 (11%)

Query: 2   ASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIK----STIE 57
           +S+ LK+    +P  Q+ +    L      + IA  CG+S  +  L +   K        
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT 59

Query: 58  G-GSDTITALALSP--DDKLLFSSGHSREIRVWDLST--------LKCLRSWKGHDGPAI 106
           G GS  +T +  SP    + L S   S ++ VW  +         +     ++   GP  
Sbjct: 60  GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
            ++    G  L   G  R      +         +           H    + +      
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179

Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
           D    V+        +  D+   +  S     + S         V +   +  +  K   
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239

Query: 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286
               + +    +  G    S+L S                F TVG    +R+W+      
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQ--------------KFATVGADATIRVWDV----- 280

Query: 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQG-LLCVTADQQLLLY 331
               +S     + +D  + G     V+ +  G ++ ++ D  L  Y
Sbjct: 281 ---TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 30  DGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALS---PDDKLLFSSGHSREIR 85
           D    A    + +I + D++ +            +    +      +  + S      + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 86  VWDL 89
            ++L
Sbjct: 322 FYEL 325

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.7 bits (176), Expect = 2e-14
 Identities = 33/336 (9%), Positives = 81/336 (24%), Gaps = 56/336 (16%)

Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 195
                 GH   ++++  +P      L SGS D  +  W        +    H + + S+ 
Sbjct: 5   VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSS-----SSMHQDHSNLIVSLD 53

Query: 196 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255
            +        +  D +      +              +   A+      D  L      T
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV---LTNDDDLLILQSFT 110

Query: 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315
               +        +        +          Q      +    D         + +  
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375
           +     + A   +      ++  +++                                  
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREV--------------------------------KT 198

Query: 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCV 434
            +         + S+  A        ++   +++G       S D ++ ++        +
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-------SLDTNIFIYSVKRPMKII 251

Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
                H   V  + +     + LVS  +D  IK W+
Sbjct: 252 KALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 46/291 (15%)

Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450
            ++GH++ +  L    L       ++GS D  +  W S S     +   H   + ++  S
Sbjct: 8   TISGHNKGITALTVNPL-------ISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55

Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
           K  +   +S      +   +        +                D   +  +    ++ 
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 511 TGSQDRTACVWRLPD---------------------LVSVVTFRGHKRGIWSVEFSP--- 546
           +   +       L                        VS       +     +  SP   
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 547 --------VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598
                      ++      +          S +       +             + +   
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 599 DGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
           D  + +++V+   + I   + H+D +  L          + G+DA +  W+
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 1e-11
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 2/141 (1%)

Query: 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485
             S+      + T        ++ S               +           +       
Sbjct: 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206

Query: 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEF 544
               ++    +  +      + LV TGS D    ++ +   + ++     HK G+ ++ +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 545 SPVDQVVITASGDKTIKIWSI 565
                 ++++  D  IK W++
Sbjct: 267 ET-PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (151), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 61  DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH--------- 111
              + +++SP +  + +     +I ++DL + +   S        I              
Sbjct: 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222

Query: 112 --PSGGLLATAGADRKVLVWDV-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
                 L+AT   D  + ++ V            HK  V+++L+      S L S   DA
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADA 279

Query: 169 TVRVWDLL 176
            ++ W+++
Sbjct: 280 CIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 9e-11
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQI 593
                 + E    + +V T S D  I I+S+      +K    H   V    + T    +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272

Query: 594 VSCGADGLVKLWTV 607
           VS GAD  +K W V
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (142), Expect = 4e-10
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKH 187
                   +                 + ++ L+ +GS D  + ++ +    K +  L+ H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 188 FSRVTSMAITSDGSTLISAGRDKVVNLWD 216
              V ++   +   TL+S+G D  +  W+
Sbjct: 258 KDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (124), Expect = 7e-08
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 93  KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
           + L++  GH+     +  +P    L +   D +++ W             H  ++ S+  
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54

Query: 153 HPDT 156
               
Sbjct: 55  SKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 629
            LKT  GH   +   +       ++S   DG +  W+  +         H + I +L   
Sbjct: 5   VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55

Query: 630 KKTEMF 635
           K  E  
Sbjct: 56  KAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 55  TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
           TI G +  ITAL ++P    L S  +   I  W  S++        H    + +    + 
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQ 58

Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGH 143
              + +  D   +       F +      
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVAS 87

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 48/422 (11%), Positives = 87/422 (20%), Gaps = 103/422 (24%)

Query: 61  DTITALALSPDDKLLFSS-----GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
           +     A +PD + ++ +         +  V D    + +    G   P         G 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS 59

Query: 116 LLATAGA----------DRKVLVWDVDGGFCTHYFKGHKGVVS-------SILFHPDTDK 158
            +A A               V V+D      T   +                   PD   
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAG-RDK 210
            L +  S    V V DL  K     LD          +  T      DGS    A   + 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270
              +     +  +        +                                      
Sbjct: 180 TPEITHTEVFHPEDEFL----INHPAYSQKA----------------------------- 206

Query: 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
               +V           +  S D      ++       A    P     +        + 
Sbjct: 207 --GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264

Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390
                                            ++       T    V V D  +     
Sbjct: 265 LLV------------------------------DQRDEWRHKTASRFVVVLDAKTGERLA 294

Query: 391 VLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448
                 EI    D+  +S     +L    + D ++ + D+ES   +            + 
Sbjct: 295 KFEMGHEI----DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350

Query: 449 FS 450
            +
Sbjct: 351 TA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.4 bits (168), Expect = 4e-13
 Identities = 31/209 (14%), Positives = 53/209 (25%), Gaps = 26/209 (12%)

Query: 14  PVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK 73
             +         +   DGS    A G                       I   A S    
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---EDEFLINHPAYSQKAG 207

Query: 74  LLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPS------------------ 113
            L    ++ +I   DLS+   K L + +            P                   
Sbjct: 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 267

Query: 114 --GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
                     A R V+V D   G     F+    +  SI    D    L    + D T+ 
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLY 326

Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDG 200
           + D  + + + ++++       +     G
Sbjct: 327 IHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 3e-11
 Identities = 30/289 (10%), Positives = 67/289 (23%), Gaps = 40/289 (13%)

Query: 27  VSSDGSFIACACGES------INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG- 79
            + D   +               ++D     +   I+GG   +    ++ D   +  +  
Sbjct: 9   PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHAST 66

Query: 80  ---------HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG---------GLLATAG 121
                     +  + V+D  TL      +  D P   +  +P            L     
Sbjct: 67  VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126

Query: 122 ADRKVLVWDVDGGFCTHYFKGH-------KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
               V V D++G                     +  +   D       +   + T  +  
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD-GSLAKVAFGTEGTPEITH 185

Query: 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
                           +   A +     L+       ++  DL     K       + EA
Sbjct: 186 TEVFHPE-----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240

Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283
             A          ++ +               +        V + +A +
Sbjct: 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.3 bits (152), Expect = 4e-11
 Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 21/185 (11%)

Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
           G +  V    + +  +  +E              +   A+S+K    LV  +    I   
Sbjct: 168 GSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQK-AGRLVWPTYTGKIHQI 221

Query: 470 SFDGLSDDAEQPMNLKAKAV------------VAAHGKDINSLAVAPNDSLVCTGSQDRT 517
                       +    +A             VA H        +          +  R 
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFE 575
             V        +  F      I S+  S  ++  +   ++GDKT+ I     G  L++  
Sbjct: 282 VVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340

Query: 576 GHTSS 580
                
Sbjct: 341 QLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.2 bits (144), Expect = 4e-10
 Identities = 26/280 (9%), Positives = 65/280 (23%), Gaps = 37/280 (13%)

Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCL----DTCALS--SGKILIVTGSKDNSVRLWDSESR 431
           V+V+D  ++  +  +         +       +L+     +L    S   +V + D E +
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 432 CCV-------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
                                     +      V+  ++ T ++                
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT------HTEVFHPED 193

Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVC---------------TGSQDRTACVWRLPDLVSV 529
           +      A+ +    L        +                    +        P     
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 530 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLT 588
           V    H+                  +  + + +     G  L  FE GH    +  S   
Sbjct: 254 VA--YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311

Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
           +         D  + +    +GE + + ++       +  
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT 351

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.9 bits (162), Expect = 4e-12
 Identities = 43/349 (12%), Positives = 100/349 (28%), Gaps = 36/349 (10%)

Query: 65  ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124
              L   +    +   + +I + D  + K ++                SG  L   G D 
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDA 83

Query: 125 KVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
           ++ + D+     T           + V SS     + D+  +          + D    +
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLE 142

Query: 180 CVATLDKHFSRVTSMAITSDGST-LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238
               +      V +     +     I A  +    + ++++    L V   ++       
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT- 201

Query: 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298
                           +I       +  + +     +    N++   + + K   ++   
Sbjct: 202 ----------------SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245

Query: 299 EMDDSKRGFTAATVLPSNQGLLCVTA---DQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355
           ++  +      A  +    G +  T+   D  + L  T      +        L G    
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 305

Query: 356 ILDLKFLGEEEQYLAVATNI-------EQVQVYDLSSMSCSYVLAGHSE 397
            L +K    +  +L V T         + V V+DL ++   Y +   +E
Sbjct: 306 SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 64.2 bits (155), Expect = 3e-11
 Identities = 60/462 (12%), Positives = 121/462 (26%), Gaps = 96/462 (20%)

Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
            L   D       +  D   + + D  +KK V  +D  ++ V    +++ G  L+  GRD
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD 82

Query: 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269
             +++ DL              +E             F    ++ TI             
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIE-----ARSVESSKFKGYEDRYTI-----------AG 126

Query: 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329
                   + + ++                +          T  P  +    + + +   
Sbjct: 127 AYWPPQFAIMDGETLEPK----------QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 176

Query: 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389
               V+   K                                   +  V   D+ +++ +
Sbjct: 177 FIVNVKETGK-----------------------------------VLLVNYKDIDNLTVT 201

Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 448
            + A         D    SS +  +   +  N V + DS+ R    +   G     G  A
Sbjct: 202 SIGAAPFLADGGWD----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257

Query: 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508
                +   V  +S       S  G           K  A +   G     +   P  S 
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317

Query: 509 VC-------TGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPV-DQVV 551
           +             ++  V+ L +L +                 + +   E++   D+V 
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377

Query: 552 ITASG------------DKTIKIWSISDGSCLKTFEGHTSSV 581
            +               DKT+K+ ++     L T  G  +  
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFNVY 419

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.7 bits (151), Expect = 9e-11
 Identities = 23/197 (11%), Positives = 51/197 (25%), Gaps = 8/197 (4%)

Query: 41  SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-- 98
            I +VD  +  I   I+ G   +    +S   + L   G    I + DL   +  +    
Sbjct: 43  QIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101

Query: 99  ---KGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154
                                 +A A    +  + D +              V +  +HP
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161

Query: 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214
           +   + +   S +    + ++     V  ++       ++        L   G D     
Sbjct: 162 EPRVAAI-IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220

Query: 215 WDLRDYSCKLTVPTYEM 231
           +     +          
Sbjct: 221 FMTAANNSNKVAVIDSK 237

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 0.003
 Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 6/109 (5%)

Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
             +   +T      I +        +K  +    +V  +     G  ++  G D  + + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMI 88

Query: 606 TVRTGEC-----IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
            +   E      I    +      +   G +      G          D
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.8 bits (159), Expect = 6e-12
 Identities = 17/234 (7%), Positives = 53/234 (22%), Gaps = 33/234 (14%)

Query: 23  GPLVVSSDGSFIACACGES--INIVDLSNASIKSTIEGG-------SDTITALALSPDDK 73
             +   +  + +      S     + +  AS     +             T    S    
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186

Query: 74  LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133
           L  S   +       +      +     +  +     +  G L+    +          G
Sbjct: 187 LAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242

Query: 134 GFCTHYFKGHKGVVSSILFHPD--------TDKSLLF---------SGSDDATVRVWDLL 176
                   G++    +  F            +   +            +           
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302

Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPT 228
             +    +        ++    DG++    ++   +V++++D      + +V  
Sbjct: 303 VGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.6 bits (156), Expect = 1e-11
 Identities = 19/265 (7%), Positives = 54/265 (20%), Gaps = 33/265 (12%)

Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDT-----CALSSGKILIVTGSKDNSVRLWDSESRC 432
           V+V+D  +      +         +          +S   L+      ++          
Sbjct: 98  VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157

Query: 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492
              +                       GS   ++           A     +       A
Sbjct: 158 DDQLTKSA----SCFHIHPGAAATHYLGSCPASLAASD----LAAAPAAAGIVGAQCTGA 209

Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
                 +        LV   +                    G++ G  +  F      ++
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269

Query: 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI------------------- 593
               +    +    + S         +S + AS       I                   
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329

Query: 594 -VSCGADGLVKLWTVRTGECIATYD 617
             +     ++ ++   + +  ++ +
Sbjct: 330 YANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.2 bits (129), Expect = 3e-08
 Identities = 16/191 (8%), Positives = 51/191 (26%), Gaps = 26/191 (13%)

Query: 20  YGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTI------EGGSDTITALALSPDDK 73
                +   +  +    +C  S+   DL+ A   + I         + +  A   +    
Sbjct: 165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224

Query: 74  LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI----------GMACHPSGGLLATA--- 120
           L+++   S        +      +  G++               +A   +   +      
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 121 ------GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
                  A           G  +     +     +I+   D       + +    + ++D
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 175 LLAKKCVATLD 185
             + +  ++++
Sbjct: 344 AASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.4 bits (127), Expect = 6e-08
 Identities = 39/357 (10%), Positives = 79/357 (22%), Gaps = 43/357 (12%)

Query: 100 GHDGPAIGMACHPSGG-----LLATAGADRKVLVWDVDGGFCTHYFKGHK--GVVSS--- 149
             DG +               L A      +  V     G    +  G      V+    
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76

Query: 150 -ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGS 201
                  T  +    G     V V+D +    +A ++           RV  +   +  +
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 202 TL-ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260
            L              +   S      +         I PG+A   +L S          
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----HIHPGAAATHYLGSCPASLA---- 188

Query: 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL 320
                   +             + C   Q  S                A+++L  +    
Sbjct: 189 -------ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241

Query: 321 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380
             T    +    +    +       +   +    +  D   +   E   +     E    
Sbjct: 242 GATMKAAIDGNESGRKADNFRS---AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298

Query: 381 YDLSSMSCSYVLAGHSEIVLCLDTCALSS-GK-ILIVTGSKDNSVRLWDSESRCCVG 435
              S    S  ++   +     D    +  G        +    + ++D+ S     
Sbjct: 299 VTASVGQTSGPISNGHDS----DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 21/229 (9%), Positives = 52/229 (22%), Gaps = 22/229 (9%)

Query: 413 LIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAV-------AFSKKLQNFLVSGSSD 463
           + +      +   W   +     +G   G   ++          A +         G   
Sbjct: 36  ITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRT 95

Query: 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWR 522
             ++V+        A+  +     A   + G  ++ +    + + L+        A    
Sbjct: 96  DYVEVFDPVTFLPIADIEL---PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152

Query: 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL------KTFEG 576
           +P        +                     S   ++    ++           +    
Sbjct: 153 VPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209

Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625
              S   A     G  + +  +  L            A  D +E    A
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.1 bits (121), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 21  GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK--LLFSS 78
             G ++++ + S    A  E+ + V  S       I  G     A+  + D       +S
Sbjct: 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANS 333

Query: 79  GHSREIRVWDLSTLKCLRSWKGHDGP 104
             +  + ++D ++ +   S +   GP
Sbjct: 334 AGTEVLDIYDAASDQDQSSVELDKGP 359

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 53/447 (11%), Positives = 119/447 (26%), Gaps = 68/447 (15%)

Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
            +   D +     +  D   + + D    +    LD  ++ V    +++ G  L   GRD
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82

Query: 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269
             VN+ DL                 + +              ++                
Sbjct: 83  GKVNMIDLWMKEPTTVAEI-----KIGSEARSIETSKMEGWEDKY-----------AIAG 126

Query: 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA--DQQ 327
                   + + ++    + +S+      E +       AA +    +    V      +
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS 387
           +LL    ++   K   I         E  L    L    +Y   A N     V   +   
Sbjct: 187 ILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239

Query: 388 CSYVLAGHSEIVLCLDTCA----LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443
               +             A     + G +   +   D+SV L  ++          +   
Sbjct: 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----GHPDNAWK 295

Query: 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503
           +     +    +  +  +  ++  ++         +  +N           +   S+AV 
Sbjct: 296 ILDSFPALGGGSLFI-KTHPNSQYLY--------VDATLN--------PEAEISGSVAV- 337

Query: 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASG------ 556
            +   +     D       + +   +    G  R +   EF+    +V  +         
Sbjct: 338 FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPR-VVQGEFNKDGTEVWFSVWNGKDQES 394

Query: 557 ------DKTIKIWSISDGSCLKTFEGH 577
                 DKT+++  +     L T  G 
Sbjct: 395 ALVVVDDKTLELKHVIKDERLVTPTGK 421

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 18/196 (9%)

Query: 41  SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----L 95
            I ++D S   IK+ ++ G   +    LS   + LF  G   ++ + DL   +      +
Sbjct: 43  QIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 101

Query: 96  RSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154
           +                      A A    + ++ D +                   +HP
Sbjct: 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161

Query: 155 DTD----------KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS-MAITSDGSTL 203
           +               + +  +   + + D      + T +    R      +       
Sbjct: 162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221

Query: 204 ISAGRDKVVNLWDLRD 219
           I+A   +   +     
Sbjct: 222 ITAANARNKLVVIDTK 237

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 17/188 (9%)

Query: 13  EPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDD 72
           + V  +  GG         +F+    G       + + S+ + I    +     A    D
Sbjct: 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV-ALIGTDPEGHPDNAWKILD 298

Query: 73  KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132
                 G S  I+    S    + +    +    G         +   G+D +     + 
Sbjct: 299 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 358

Query: 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS------------DDATVRVWDLLAKKC 180
                   +G   VV    F+ D  + + FS              DD T+ +  ++  + 
Sbjct: 359 EWAGIT--EGQPRVVQ-GEFNKDGTE-VWFSVWNGKDQESALVVVDDKTLELKHVIKDER 414

Query: 181 VATLDKHF 188
           + T    F
Sbjct: 415 LVTPTGKF 422

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 14/286 (4%)

Query: 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYS 221
           + S+   + V D+ + K  AT+    S      I+ DG+ + ++      V++ D    +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
              TVP     + V   P G        + +  ++     +     +  G+  +    + 
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
           D   LY   + D T+S     +K      +V  S +G+       ++ +     +    +
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 342 ELILSKRLVGYNEE----ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
           + + +  +     E     + +   G +     V      V + D  +   +  +    +
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 398 IVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVG---VGTG 439
                   A++  GK + V  S  N+V + D+ +        VG  
Sbjct: 246 P----AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 77  SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGF 135
           ++  S  I V D+++ K   +      P  G    P G  +  A A    V + D     
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 136 CTHYFKGHKG 145
                     
Sbjct: 66  VIATVPAGSS 75

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 33  FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLST 91
           +IA +  ++I+++D+++  + +TI  GS+      +SPD   ++ ++ HS ++ + D +T
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 92  LKCLRSWKGHDGPAIGMACHP 112
              + +      P        
Sbjct: 64  NNVIATVPAGSSPQGVAVSPD 84

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 33  FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLST 91
                   +++++D     I + I  G D    +A++PD K ++ +      + V D +T
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

Query: 92  LKCLRSWKGHDGP-AIG 107
                +      P A G
Sbjct: 276 NTITATMAVGKNPYASG 292

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
           +  S+ +++ + D  S             +G    S       V+ +  + + +  
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIID 60

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 26/273 (9%), Positives = 58/273 (21%), Gaps = 40/273 (14%)

Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV 436
           + V D++S   +  +   S  +       +S  G  + V  +  N V + D+ +   +  
Sbjct: 14  ISVIDVTSNKVTATIPVGSNPM----GAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69

Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496
                   G        Q ++ + +S     + +         +         ++  GK 
Sbjct: 70  VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK 129

Query: 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT------------------------- 531
           +           V             +      +                          
Sbjct: 130 LYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189

Query: 532 --------FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583
                         GI          V        T+ +                     
Sbjct: 190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAG 248

Query: 584 ASFLTRGAQI-VSCGADGLVKLWTVRTGECIAT 615
            +    G ++ V+      V +    T    AT
Sbjct: 249 IAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
            D      T          + I   PD  K +  + S   TV V D       AT+
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPD-GKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 2/169 (1%)

Query: 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178
                  + V DV     T         +   +  PD    +  + +    V + D    
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPD-GTKVYVANAHSNDVSIIDTATN 64

Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238
             +AT+    S              ++      +++ D    +   TV T +    +   
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287
           P G       +     ++        I+ ++VG          D   +Y
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 2/137 (1%)

Query: 93  KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
             + +      P           +         + V D          K         + 
Sbjct: 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN 208

Query: 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKV 211
              T   +        TV + D    K  A +         +A+T DG  + ++      
Sbjct: 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNT 267

Query: 212 VNLWDLRDYSCKLTVPT 228
           V++ D    +   T+  
Sbjct: 268 VSVIDTATNTITATMAV 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG 568
                  T  +                     +  +P  + V +  S   T+ +   +  
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 569 SCLKTFE 575
           +   T  
Sbjct: 277 TITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 2/76 (2%)

Query: 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI-VSCGADGLVKLWTVR 608
             I  S    I +  ++      T     S+ + A     G ++ V+      V +    
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 609 TGECIATYDKHEDKIW 624
           T   IAT         
Sbjct: 63  TNNVIATVPAGSSPQG 78

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 16/60 (26%), Gaps = 2/60 (3%)

Query: 87  WDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
            D  T K          PA G+A  P G  +         V V D      T      K 
Sbjct: 229 IDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 8e-08
 Identities = 39/339 (11%), Positives = 83/339 (24%), Gaps = 31/339 (9%)

Query: 116 LLATAGADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
           +   +   +++ VW+++  G           G V  ++  PD  + L      +  V  +
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAY 64

Query: 174 DLLAKKCVATLDKHF---SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230
            +       T          +T ++    G  +     +         +    + V    
Sbjct: 65  RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 124

Query: 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290
                      SA  S  +        K+ R         G                 + 
Sbjct: 125 E----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT----TVEG 176

Query: 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350
           +    + F  ++             +   L         + T   +PE            
Sbjct: 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----------F 226

Query: 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS-S 409
                  D+    +     A       + V+ +S         G            +  S
Sbjct: 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 286

Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448
           GK LI  G K + + +++      +    G +   G  A
Sbjct: 287 GKYLIAAGQKSHHISVYE------IVGEQGLLHEKGRYA 319

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 30/317 (9%), Positives = 72/317 (22%), Gaps = 24/317 (7%)

Query: 163 SGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRD 219
           +  +   + VW+L  +  +          +V  M ++ D   L    R +  V  + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279
               LT      +      P      S         +                  +  + 
Sbjct: 69  DDGALTFAAESAL------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122

Query: 280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339
             +        +           + +         S+ G L      ++           
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP--- 179

Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
                   R + ++        + E    + V    +     +    +   +    S+  
Sbjct: 180 --------RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QTLDMMPENFSDTR 230

Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG---AVAFSKKLQNF 456
              D      G+ L       + + ++       V    G                 +  
Sbjct: 231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 290

Query: 457 LVSGSSDHTIKVWSFDG 473
           + +G   H I V+   G
Sbjct: 291 IAAGQKSHHISVYEIVG 307

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 69  SPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAG-ADRK 125
           S    +  +S  S++I VW+L+    L   +     G    M   P    L      + +
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 126 VLVWDVDGGFCTHYFKGHKGVVSS---ILFHPD 155
           VL + +        F     +  S   I     
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 11/134 (8%), Positives = 30/134 (22%), Gaps = 9/134 (6%)

Query: 411 KILIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468
           + + +   +   + +W  + E    +       G V  +  S   +   V    +  +  
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528
           +                           +  ++       V  GS +         +   
Sbjct: 64  YRIAPDDGALTFAAESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116

Query: 529 VVTFRGHKRGIWSV 542
            V       G+   
Sbjct: 117 PVGVVDVVEGLDGC 130

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 10/118 (8%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 33  FIACACGESINIVDLSNA---SIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWD 88
           +IA    + I++ +L++    ++   ++     +  + +SPD + L+        +  + 
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 89  LSTLKC---LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
           ++         +     G    ++    G  +     +   +                
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 23/190 (12%), Positives = 44/190 (23%), Gaps = 21/190 (11%)

Query: 42  INIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLSTLKCLRSWKG 100
              +D     +   +    + +         K    +  +S        +          
Sbjct: 158 FTAIDAETMDVAWQVIVDGN-LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV 216

Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
            +   I  A   +G       +   V V        T Y    K         PD  K  
Sbjct: 217 FNVERI-AAAVKAGNFKTIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTS-PD-GKYF 272

Query: 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM-------------AITSDGSTLISAG 207
           + +G    TV V  +   K     +       ++                  G+   +  
Sbjct: 273 IANGKLSPTVSVIAI--DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330

Query: 208 RDKVVNLWDL 217
            D  V  W++
Sbjct: 331 IDSQVCKWNI 340

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 23/158 (14%), Positives = 39/158 (24%), Gaps = 32/158 (20%)

Query: 27  VSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-SREIR 85
               G+F      +   +     +     I    +       SPD K   ++G  S  + 
Sbjct: 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGL-NTSPDGKYFIANGKLSPTVS 283

Query: 86  VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA-------------TAGADRKVLVWDVD 132
           V  +  L  L  ++        +   P  GL               T   D +V  W++ 
Sbjct: 284 VIAIDKLDDL--FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341

Query: 133 GGFC---------------THYFKGHKGVVSSILFHPD 155
                                Y  GH     +     D
Sbjct: 342 DAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD 379

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 50/424 (11%), Positives = 106/424 (25%), Gaps = 78/424 (18%)

Query: 71  DDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
           D+   F S GH  E+RV  + +++ L          I +  +           + K +  
Sbjct: 9   DEYYGFWSGGHQGEVRVLGVPSMRELMR--------IPVF-NVDSATGWGITNESKEI-- 57

Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHF 188
            + G         H   +S      D  K L  +   +  V    L   K        + 
Sbjct: 58  -LGGDQQYLNGDCHHPHISMTDGRYD-GKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 189 SRVTSMAITSDGSTL--ISAGRDKVVNLWDLRDYSCKLTVPTYEMV-----EAVCAIPPG 241
             +  + +     T          +    D  D+S   +   +  +     +    +   
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175

Query: 242 SAFDS----------FLSSYNQQTIKK--KRRSLEIHFITVGERGIVRMWNADSACLYEQ 289
              D+            + YN +           +  ++ V     +             
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235

Query: 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY------TTVEVPEKKMEL 343
            S    +    D          +          T+              TV V       
Sbjct: 236 DSKVPVV----DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSV------- 284

Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403
                      + LD  F  + E    +    E      L  +  ++   G+        
Sbjct: 285 --------IAIDKLDDLFEDKIELRDTIVAEPELG----LGPLHTTFDGRGN-----AYT 327

Query: 404 TCALSSGKILIVTGSKDNSVRLWDSES------RCCVGVGTGHMGAVGAVAFSKKLQNFL 457
           T  + S    +   +  ++++ ++ +       +  V    GH  A    +     + +L
Sbjct: 328 TLFIDSQ---VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK-WL 383

Query: 458 VSGS 461
           V  S
Sbjct: 384 VVLS 387

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 478 AEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535
           A++P+ L    ++ +      + +LA AP+ ++  T  +     +  +    +       
Sbjct: 9   ADKPIELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGE--IVSITPDGNQQIHATV 66

Query: 536 KRGIWSVEFSPVDQVVITASGDKTIKIW 563
           +  +  + F+    +V T     +I + 
Sbjct: 67  EGKVSGLAFTSNGDLVATGWNADSIPVV 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	882
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.57
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.5
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.49
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.45
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.14
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.07
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.61
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.4
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.01
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.15
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.11
d1k8kg_	143	Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taur	80.85

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-41  Score=287.74  Aligned_cols=175  Identities=27%  Similarity=0.470  Sum_probs=152.7

Q ss_pred             EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf             99968980456532898639999985899989999689829999889880678751378797999996999899999389
Q 002782           44 IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD  123 (882)
Q Consensus        44 i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~d  123 (882)
                      .|.+ .+...++|+||.++|++++|+|++++||+|+.||.|++||+.+++++.++.+|..+|.+++|+|++.+++++..+
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             3689-898448985888876899993898999999389929999899997999995788867777630111101111111


Q ss_pred             CCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf             93999987999389986449985799999118996199999579909999889883798833764266999990699999
Q 002782          124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL  203 (882)
Q Consensus       124 g~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l  203 (882)
                      +.+.+|+.........+.+|...+.++.|++++..  +++++.|+.+++|++.+++....+.+|...+.+++|++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE--EEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEE
T ss_conf             11011100111111110000000000001699855--7765267523575114430346871677763000016679999


Q ss_pred             EEEECCCEEEEEECCCCE
Q ss_conf             999579959997058860
Q 002782          204 ISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       204 ~s~~~dg~i~iwd~~~~~  221 (882)
                      ++++.|+.+++|+.....
T Consensus       159 ~~~~~d~~v~~~~~~~~~  176 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKE  176 (317)
T ss_dssp             EEEETTSCEEEEETTTCC
T ss_pred             EEEECCCEEEEEEECCCE
T ss_conf             999279829997512540

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.7e-41  Score=282.03  Aligned_cols=217  Identities=22%  Similarity=0.263  Sum_probs=191.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf             84453334353001300387469946998999973891999996898045653289863999998589998999968982
Q 002782            4 LPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE   83 (882)
Q Consensus         4 ~~~~~~~~~~~~~~~~y~g~~ia~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~   83 (882)
                      ..-++.|++.|.-.+- .+..++++|+|+.++++.++.|.+|++.++...+.+.+|...|++++|+|+|++||+|+.||.
T Consensus         3 ~~~~~~~~~~p~~~r~-~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~   81 (311)
T d1nr0a1           3 FSQTALFPSLPRTARG-TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN   81 (311)
T ss_dssp             CEEEEEECCCCCCCTT-CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCCCCCCCCCCCCC-CEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCE
T ss_conf             5323501589877788-759999969989999996999999999999661797478888899999489996722556736


Q ss_pred             EEEEECCCCEEE--EEEECCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             999988988067--875137879799999699989999938--9939999879993899864499857999991189961
Q 002782           84 IRVWDLSTLKCL--RSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS  159 (882)
Q Consensus        84 i~iwd~~~~~~~--~~~~~h~~~V~~i~fs~~~~~las~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~  159 (882)
                      |++||+.++...  ..+.+|..+|.+++|+|+++++++++.  +..+.+|++++++....+.+|...|.+++|+|+++ .
T Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~-~  160 (311)
T d1nr0a1          82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP-F  160 (311)
T ss_dssp             EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS-C
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-E
T ss_conf             746631011110000134335754332333111000111122111111111111111111111111111111121110-1


Q ss_pred             EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf             999995799099998898837988337642669999906999999995799599970588602
Q 002782          160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC  222 (882)
Q Consensus       160 ~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  222 (882)
                      ++++|+.||.|++||+.++++...+..|...|+++.|+|+++++++++.|+.+++|++.....
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             200011221111111111111111111111111123476422121111111110001244641

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-40  Score=279.61  Aligned_cols=158  Identities=19%  Similarity=0.295  Sum_probs=104.9

Q ss_pred             EEECCEEEEEECCCCCEE----EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             973891999996898045----6532898639999985899989999689829999889880678751378797999996
Q 002782           36 CACGESINIVDLSNASIK----STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH  111 (882)
Q Consensus        36 ~~~~~~I~i~d~~~~~~~----~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs  111 (882)
                      -...+...+|+....+..    ....+|.+.|+|++|||||++||+|+ |+.|++||+.+++.+..+..+........  
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~--  110 (388)
T d1erja_          34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE--  110 (388)
T ss_dssp             EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred             CCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCC--
T ss_conf             688970898688777620541076079999689999999999999994-99489998136405766316654432443--


Q ss_pred             CCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCE
Q ss_conf             99989999938993999987999389986449985799999118996199999579909999889883798833764266
Q 002782          112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV  191 (882)
Q Consensus       112 ~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v  191 (882)
                                            ........+|...|.+++|+|++..  |++|+.||.|++|+...++.+..+.+|...|
T Consensus       111 ----------------------~~~~~~~~~~~~~V~~l~~s~~~~~--l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v  166 (388)
T d1erja_         111 ----------------------NLNTSSSPSSDLYIRSVCFSPDGKF--LATGAEDRLIRIWDIENRKIVMILQGHEQDI  166 (388)
T ss_dssp             ------------------------------CCCCBEEEEEECTTSSE--EEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ----------------------CCCCCCCCCCCCCEEEEEECCCCCC--CEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------2111014677898899998899980--1213444111121111111111111111111


Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf             99999069999999957995999705886
Q 002782          192 TSMAITSDGSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       192 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  220 (882)
                      .++.+++++..+++++.++.+++|+....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             11011111111112221015654101111

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-40  Score=275.82  Aligned_cols=192  Identities=22%  Similarity=0.381  Sum_probs=136.1

Q ss_pred             EEECCCCCEEEEEECCEEEEEE--CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE-----EEE
Q ss_conf             6994699899997389199999--689804565328986399999858999899996898299998898806-----787
Q 002782           25 LVVSSDGSFIACACGESINIVD--LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRS   97 (882)
Q Consensus        25 ia~s~dg~~la~~~~~~I~i~d--~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~-----~~~   97 (882)
                      +.+++||+.........-.+..  +...+.++.+ +|...|+|++|+|+|++||+|+ ||.|+|||+.++..     ...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~   92 (337)
T d1gxra_          15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD   92 (337)
T ss_dssp             EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred             CCCCCCCCEEEECCCCCCEECCCCCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEE
T ss_conf             2198999787403697514567999875499987-9999289999989999999997-9988997736776331168764


Q ss_pred             EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC--CEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf             513787979999969998999993899399998799--938998644998579999911899619999957990999988
Q 002782           98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG--GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL  175 (882)
Q Consensus        98 ~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~  175 (882)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+..  ......+.+|...+.+++|+|++..  +++++.|+.|++|++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV--CFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE--EEEEETTSCEEEEET
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
T ss_conf             048899689999867998898861233211111111111111111111111111111111111--111111111111111


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf             988379883376426699999069999999957995999705886
Q 002782          176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  220 (882)
                      .++++......|...+.+++|++++..+++++.|+.+++|++.++
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~  215 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             111111111111111110123444321122356655321111110

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-39  Score=274.52  Aligned_cols=219  Identities=26%  Similarity=0.431  Sum_probs=98.1

Q ss_pred             CCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC
Q ss_conf             88742489653230499789999636982999948995478654054333899998158981999830899089986379
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG  473 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~  473 (882)
                      +|...+.++.  +.+++.. +++++.++.+++||..+.........+...+ ++.+.+....++++++.|+.+++|+...
T Consensus       161 ~h~~~v~~~~--~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         161 GHEQDIYSLD--YFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             CCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             CCCCCCCCCC--CCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf             1111111101--1111111-1122210156541011111100001245442-1123688787589973898199963455


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf             99997775432100100102788049998289968999718993899958996169999654576689999379989999
Q 002782          474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT  553 (882)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s  553 (882)
                      ......   ..........|...|.+++|+|+++++++++.|+.|++||+.+..........                  
T Consensus       237 ~~~~~~---~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------  295 (388)
T d1erja_         237 GFLVER---LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP------------------  295 (388)
T ss_dssp             CCEEEE---EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------------------
T ss_pred             CCCCEE---ECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC------------------
T ss_conf             730001---02443334577898789999799999999978992898751577643210134------------------


Q ss_pred             EECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEE-----
Q ss_conf             518980999966999224674067678899999858999999646980999976888167772257774689999-----
Q 002782          554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV-----  628 (882)
Q Consensus       554 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----  628 (882)
                                  ..+.+......|...|.+++|+|++++|++++.||.|++||+.+++++.++.+|.+.|.++++     
T Consensus       296 ------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         296 ------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             ------------CCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf             ------------44200110124553278999889999999996989799999999969999968899789999846742


Q ss_pred             -CCCCCEEEEEECCCCEEEEEC
Q ss_conf             -279979999728997999987
Q 002782          629 -GKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       629 -s~~~~~l~s~~~dg~i~iw~~  649 (882)
                       +|++.+|++|+.||.|++|++
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCCCEEEEEECCCEEEEEEE
T ss_conf             5899999999918997999762

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-39  Score=270.39  Aligned_cols=239  Identities=18%  Similarity=0.307  Sum_probs=137.0

Q ss_pred             CCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEECCC--CEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC
Q ss_conf             8874248965323049978999963698299994899--54786540543338999981589819998308990899863
Q 002782          394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~  471 (882)
                      +|.+.|.+++  ++|+++. +++++.||.|++||+..  ......+..|...+..++|+|++. ++++++.|+.+++|++
T Consensus        95 ~h~~~I~~v~--~s~dg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          95 NRDNYIRSCK--LLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CTTSBEEEEE--ECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred             CCCCCEEEEE--ECCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             8899689999--8679988-9886123321111111111111111111111111111111111-1111111111111111


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf             79999977754321001001027880499982899689997189938999589961699996545766899993799899
Q 002782          472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  551 (882)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l  551 (882)
                      .+..          .......|...+.+++|++++..+++++.|+.+++||+.+++.+..+. |...|.+++|+|+++++
T Consensus       171 ~~~~----------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l  239 (337)
T d1gxra_         171 HNQT----------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             TTTE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEE
T ss_pred             CCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCC
T ss_conf             1111----------111111111111101234443211223566553211111100000246-66615799971530300


Q ss_pred             EEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             99518980999966999224674067678899999858999999646980999976888167772257774689999279
Q 002782          552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  631 (882)
Q Consensus       552 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~  631 (882)
                      ++++.|+.+++|++..+... ....|...|++++|+|++++|++++.||.|++||+.+++++..+. |...|++++|+|+
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d  317 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVD  317 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTT
T ss_pred             CEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC-CCCCEEEEEEECC
T ss_conf             00002564211111111100-001245654169998999999999489969999899997999926-9998799999279


Q ss_pred             CCEEEEEECCCCEEEEEC
Q ss_conf             979999728997999987
Q 002782          632 TEMFATGGSDALVNLWHD  649 (882)
Q Consensus       632 ~~~l~s~~~dg~i~iw~~  649 (882)
                      +++|++++.||.|++|++
T Consensus       318 ~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         318 DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEECCCEEEEEEE
T ss_conf             999999908996999977

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-39  Score=272.79  Aligned_cols=316  Identities=25%  Similarity=0.478  Sum_probs=255.2

Q ss_pred             EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf             99889880678751378797999996999899999389939999879993899864499857999991189961999995
Q 002782           86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus        86 iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~  165 (882)
                      .|.. ......+++||.++|++++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++..  ++++.
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~--~~~~~   78 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL--LASCS   78 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE--EEEEE
T ss_pred             CCCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC--CCCCC
T ss_conf             3689-89844898588887689999389899999938992999989999799999578886777763011110--11111


Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf             79909999889883798833764266999990699999999579959997058860234313743065789629999865
Q 002782          166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD  245 (882)
Q Consensus       166 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (882)
                      .++.+..|+.........+..|...+.++.+++++..+++++.|+.+++|++.++...                      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------------------  136 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV----------------------  136 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE----------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEE----------------------
T ss_conf             1111011100111111110000000000001699855776526752357511443034----------------------


Q ss_pred             CCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             32321000001002466430999973998399997888506640278512210137767651499980699817999708
Q 002782          246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD  325 (882)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (882)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (317)
T d1vyhc1         137 --------------------------------------------------------------------------------  136 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             80899971136631010343435235587347878847899689999738838999699950235630887424896532
Q 002782          326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC  405 (882)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  405 (882)
                                                                                      ..+.+|...+.++.  
T Consensus       137 ----------------------------------------------------------------~~~~~~~~~~~~~~--  150 (317)
T d1vyhc1         137 ----------------------------------------------------------------KTFTGHREWVRMVR--  150 (317)
T ss_dssp             ----------------------------------------------------------------EEEECCSSCEEEEE--
T ss_pred             ----------------------------------------------------------------EEECCCCCCCEEEE--
T ss_conf             ----------------------------------------------------------------68716777630000--


Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             30499789999636982999948995478654054333899998158981999830899089986379999977754321
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  485 (882)
                      +.+++.. +++++.|+.+++|+..++.....+..|...+.++.++++... ....                         
T Consensus       151 ~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~-------------------------  203 (317)
T d1vyhc1         151 PNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY-SSIS-------------------------  203 (317)
T ss_dssp             ECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG-GGGG-------------------------
T ss_pred             CCCCCCE-EEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCC-CEEE-------------------------
T ss_conf             1667999-999927982999751254034788247787337998632564-1110-------------------------


Q ss_pred             CHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             00100102788049998289968999718993899958996169999654576689999379989999518980999966
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  565 (882)
Q Consensus       486 ~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~  565 (882)
                             .............+.++++++.|+.|++|++.+++++..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus       204 -------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         204 -------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             -------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             -------CCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf             -------3456303430258861475169978999888999688999688998799998799999999979894999999


Q ss_pred             CCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEE
Q ss_conf             99922467406767889999985899999964698099997
Q 002782          566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       566 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      .+++++.++.+|.+.|++++|+|++++|++++.||.|++||
T Consensus       277 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         277 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             99919999928999889999949999999992899499829

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-38  Score=264.22  Aligned_cols=152  Identities=22%  Similarity=0.334  Sum_probs=107.3

Q ss_pred             HCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf             02788049998289968999718993899958996169999654576689999379989999518980999966999224
Q 002782          492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL  571 (882)
Q Consensus       492 ~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  571 (882)
                      .+...+.++.++|++..+++++.|+.|++|+..++..+..+.+|...|.++.++  ++++++++.||.|++||+.++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCEE
T ss_conf             012332111111210021012456368763012211111111111111111232--100333201111111111111100


Q ss_pred             EEEECCCCCEEEE-EEEECCCEEEEEECCCEEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             6740676788999-998589999996469809999768881677-72257774689999279979999728997999987
Q 002782          572 KTFEGHTSSVLRA-SFLTRGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       572 ~~~~~h~~~v~~~-~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                        +..|...+..+ .+++++.+++++ .||.|++||+++++++. .+.+|.+.|++++|+|+ .++++++.||.+.+|..
T Consensus       277 --~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         277 --FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             --EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             --CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             --012468822999984999899998-09979999999997988884589998999998399-19999989890999999

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-39  Score=273.09  Aligned_cols=182  Identities=18%  Similarity=0.386  Sum_probs=127.7

Q ss_pred             CCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             49978999963698299994899547865405433389999815898199983089908998637999997775432100
Q 002782          408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  487 (882)
Q Consensus       408 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  487 (882)
                      ++++. ++.+..|+.+++||..+++.+.....+...+.++.+++.+. .+++++.|+.+++|+.....          ..
T Consensus       169 ~~~~~-~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~----------~~  236 (355)
T d1nexb2         169 GHGNI-VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGE----------LM  236 (355)
T ss_dssp             EETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCC----------EE
T ss_pred             CCCCE-EEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCE-EEECCCCCCEEEEEECCCCC----------CC
T ss_conf             25633-44211442044430131100011000123321111112100-21012456368763012211----------11


Q ss_pred             HHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEE-EECCCCCEEEEEECCCCEEEEECC
Q ss_conf             1001027880499982899689997189938999589961699996545766899-993799899995189809999669
Q 002782          488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV-EFSPVDQVVITASGDKTIKIWSIS  566 (882)
Q Consensus       488 ~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~s~~~d~~i~iwd~~  566 (882)
                      .....|...|.++++++  +++++++.||.|++||+.+....  +..|...+.++ .+++++.+++++ .|+.|++||++
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEE--CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECC
T ss_conf             11111111111112321--00333201111111111111100--012468822999984999899998-09979999999


Q ss_pred             CCCEEE-EEECCCCCEEEEEEEECCCEEEEEECCCEEEEEEC
Q ss_conf             992246-74067678899999858999999646980999976
Q 002782          567 DGSCLK-TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       567 ~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      +++++. .+.+|..+|++++|+++ ..+++++.||.+++|.+
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             997988884589998999998399-19999989890999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-37  Score=261.58  Aligned_cols=152  Identities=23%  Similarity=0.423  Sum_probs=76.9

Q ss_pred             EEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-
Q ss_conf             0499982899689997189938999589961699996545766899993799899995189809999669992246740-
Q 002782          497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-  575 (882)
Q Consensus       497 i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  575 (882)
                      +....+.+.+.++++++.|+.+++||+.+++....+.+|..+|++++|+|++++|++++.|+.|++|++.....+..+. 
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~  266 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCC
T ss_conf             76300124421268760573699999999948899957889858999979989999996999699975212211111112


Q ss_pred             -CCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             -6767889999985899999964698099997688816777225777468999927997999972899799998
Q 002782          576 -GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       576 -~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                       .+...+..++|++++.+|++++.||.|++||+.+++++.++.+|.+.|++++|+|++.+|++|+.||.|++|+
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             24457458999989999999997979899999999939899848999789999908999999990699799859

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.6e-38  Score=263.70  Aligned_cols=279  Identities=19%  Similarity=0.296  Sum_probs=181.4

Q ss_pred             CEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEECCCCEE-
Q ss_conf             3478788478996899997388389996999502356308874248965323049978999963698299994899547-
Q 002782          355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-  433 (882)
Q Consensus       355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-  433 (882)
                      ....+++.| +++.++.+. ++.+.+|++.+......+.+|...|.+++  ++|+++. +++|+.||.|++|++.+... 
T Consensus        19 ~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~--~sp~g~~-latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          19 TAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAK--TSPSGYY-CASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEESSSTTCC
T ss_pred             CEEEEEECC-CCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEE--EECCCCE-EECCCCCCEEEEEEEECCCCC
T ss_conf             759999969-989999996-99999999999966179747888889999--9489996-722556736746631011110


Q ss_pred             -EEEEECCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCE-E
Q ss_conf             -86540543338999981589819998308--9908998637999997775432100100102788049998289968-9
Q 002782          434 -VGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-V  509 (882)
Q Consensus       434 -~~~~~~~~~~v~~i~~s~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~-l  509 (882)
                       ...+..|..+|.+++|+|++. ++++++.  +..+++|++....          ....+..|...|++++|+|++.+ +
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT----------SNGNLTGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC----------BCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             0001343357543323331110-0011112211111111111111----------1111111111111111121110120


Q ss_pred             EEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-------CCCCCEE
Q ss_conf             997189938999589961699996545766899993799899995189809999669992246740-------6767889
Q 002782          510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------GHTSSVL  582 (882)
Q Consensus       510 a~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~  582 (882)
                      ++|+.|+.|++||+++++....+.+|..+|+++.|+|+++++++++.|+.+++|++.++..+..+.       +|.+.|+
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             00112211111111111111111111111111234764221211111111100012446411222111111100246532


Q ss_pred             EEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCC-CEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             999985899999964698099997688816777225777-4689999279979999728997999987
Q 002782          583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       583 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                      +++|+|++++|++++.||.|++||+.+++++.++..|.. ....+.+.+++..|++++.||.|++|+.
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf             10247889999999379969999999996999997999863329999951999999989997999958

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=255.10  Aligned_cols=142  Identities=27%  Similarity=0.513  Sum_probs=72.3

Q ss_pred             CCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC---CCCCE
Q ss_conf             996899971899389995899616999965457668999937998999951898099996699922467406---76788
Q 002782          505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSV  581 (882)
Q Consensus       505 ~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---h~~~v  581 (882)
                      ++.++++++.||.|++||+..++.+..+.+|...+.++.++  ++++++++.|+.|++|++...+....+.+   |...+
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  263 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV  263 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECE
T ss_conf             99999999589939995255653656741665320577068--9999997489889998655442211122100011010


Q ss_pred             EEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEC-----CCCCCEEEEEECCCCCEEEEEECCCC----EEEEECC
Q ss_conf             999998589999996469809999768881677722-----57774689999279979999728997----9999879
Q 002782          582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-----KHEDKIWALAVGKKTEMFATGGSDAL----VNLWHDS  650 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~----i~iw~~~  650 (882)
                      .++.  +++.++++++.||.|++||+.+++++..+.     +|...|++++|+|++.++++|+.||+    |.+||+.
T Consensus       264 ~~~~--~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         264 TCLQ--FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEE--ECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EECC--CCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             0001--379844999089989999999997989986234789889789999879998999996899970489999389

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-37  Score=256.32  Aligned_cols=149  Identities=22%  Similarity=0.338  Sum_probs=80.4

Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             30499789999636982999948995478654054333899998158981999830899089986379999977754321
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  485 (882)
                      ..+.+.. ++++..|+.+++||+.++.++..+.+|...|++++|+|++. ++++++.|+.+++|++.....        .
T Consensus       192 ~~~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~--------~  261 (340)
T d1tbga_         192 LAPDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQE--------L  261 (340)
T ss_dssp             ECTTSSE-EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE--------E
T ss_pred             CCCCCCE-EEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEECCCCC--------C
T ss_conf             1244212-68760573699999999948899957889858999979989-999996999699975212211--------1


Q ss_pred             CHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             0010010278804999828996899971899389995899616999965457668999937998999951898099996
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS  564 (882)
Q Consensus       486 ~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd  564 (882)
                      .......+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.||.|++||
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             1111224457458999989999999997979899999999939899848999789999908999999990699799859

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-38  Score=265.72  Aligned_cols=160  Identities=17%  Similarity=0.236  Sum_probs=133.4

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf             98639999985899989999689829999889880--6787513787979999969998999993899399998799938
Q 002782           59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC  136 (882)
Q Consensus        59 ~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~  136 (882)
                      ..++|+|++|+|||++||+++.|+.|++||+.+++  .+..+++|.++|.+++|+|++++|++++.|+.|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf             99883899998999999999488989999888997899999558899888999979999999997999399986203321


Q ss_pred             E--EEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEE----EEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             9--9864499857999991189961999995799099998898837----988337642669999906999999995799
Q 002782          137 T--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC----VATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       137 ~--~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~----~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .  ..+.+|...|.+++|+|+++.  +++++.|+.+++|++.....    ......|.+.|.+++|+|++.+|++++.|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~--l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSE--EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC--CEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf             100122322110001111111211--000002576302544203343311100101112221111111111100013476


Q ss_pred             EEEEEECCCC
Q ss_conf             5999705886
Q 002782          211 VVNLWDLRDY  220 (882)
Q Consensus       211 ~i~iwd~~~~  220 (882)
                      .+++|+....
T Consensus       164 ~v~v~~~~~~  173 (371)
T d1k8kc_         164 KCRIFSAYIK  173 (371)
T ss_dssp             CEEEEECCCT
T ss_pred             EEEEEEECCC
T ss_conf             7999840157

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=247.37  Aligned_cols=329  Identities=27%  Similarity=0.508  Sum_probs=178.1

Q ss_pred             ECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf             96898045653289863999998589998999968982999988988067875137879799999699989999938993
Q 002782           46 DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK  125 (882)
Q Consensus        46 d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~  125 (882)
                      +..+.+..+.++||.+.|.+ +++++|++||+|+.||.|++||+.++++++++.+|.++|.+++|+++  +|++++.|+.
T Consensus         2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCC
T ss_conf             89988758898886875099-99978999999918990999989999799999488999899994798--6321000001


Q ss_pred             EEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             99998799938998644998579999911899619999957990999988988379883376426699999069999999
Q 002782          126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS  205 (882)
Q Consensus       126 i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s  205 (882)
                      +++|+............+...+....+.+  ..  +..+..|+.+.+|+..+++....+..+......  ..+....++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  152 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHE--KR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVS  152 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEET--TE--EEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEE
T ss_pred             CCCCCCCCCCCEECCCCCCEEEEEEECCC--CC--CCCCCCCEEEEEEECCCCCCEEEEECCCCCCEE--ECCCCCEEEE
T ss_conf             11111110000000123330476520246--52--212344403787403556300111001111000--0013330243


Q ss_pred             EECCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCE
Q ss_conf             95799599970588602343137430657896299998653232100000100246643099997399839999788850
Q 002782          206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC  285 (882)
Q Consensus       206 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~w~~~~~~  285 (882)
                      ++.|+.+++|+                                                                     
T Consensus       153 ~~~d~~i~~~d---------------------------------------------------------------------  163 (342)
T d2ovrb2         153 GAYDFMVKVWD---------------------------------------------------------------------  163 (342)
T ss_dssp             EETTSCEEEEE---------------------------------------------------------------------
T ss_pred             ECCCCEEEEEE---------------------------------------------------------------------
T ss_conf             35898699952---------------------------------------------------------------------


Q ss_pred             EEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf             66402785122101377676514999806998179997088089997113663101034343523558734787884789
Q 002782          286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE  365 (882)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (882)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (342)
T d2ovrb2         164 --------------------------------------------------------------------------------  163 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf             96899997388389996999502356308874248965323049978999963698299994899547865405433389
Q 002782          366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG  445 (882)
Q Consensus       366 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  445 (882)
                                       .........+.+|...+.+..    +++.. +++++.||.|++||+..+..+.....|...+.
T Consensus       164 -----------------~~~~~~~~~~~~~~~~~~~~~----~~~~~-l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         164 -----------------PETETCLHTLQGHTNRVYSLQ----FDGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS  221 (342)
T ss_dssp             -----------------GGGTEEEEEECCCSSCEEEEE----ECSSE-EEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             -----------------CCCCEEEEEECCCCCCCCCCC----CCCCE-EEEEECCCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf             -----------------523436678727544421006----89999-99995899399952556536567416653205


Q ss_pred             EEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC
Q ss_conf             99981589819998308990899863799999777543210010010278804999828996899971899389995899
Q 002782          446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  525 (882)
Q Consensus       446 ~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~  525 (882)
                      ++.++++   ++++++.|+.|++|++.....       .........|...+.++.++  ++++++++.||.|++||+.+
T Consensus       222 ~~~~~~~---~l~s~s~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         222 GMELKDN---ILVSGNADSTVKIWDIKTGQC-------LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEEETT---EEEEEETTSCEEEEETTTCCE-------EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EEECCCC---EEEEECCCCEEEEEECCCCCC-------CCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCC
T ss_conf             7706899---999974898899986554422-------11122100011010000137--98449990899899999999


Q ss_pred             CEEEEEEE-----CCCCCEEEEEECCCCCEEEEEECCCC----EEEEECC
Q ss_conf             61699996-----54576689999379989999518980----9999669
Q 002782          526 LVSVVTFR-----GHKRGIWSVEFSPVDQVVITASGDKT----IKIWSIS  566 (882)
Q Consensus       526 ~~~~~~~~-----~~~~~v~~i~~s~~~~~l~s~~~d~~----i~iwd~~  566 (882)
                      ++.+..+.     +|...|++++|+|++.++++|+.||+    |++||++
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             97989986234789889789999879998999996899970489999389

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-37  Score=256.46  Aligned_cols=344  Identities=15%  Similarity=0.190  Sum_probs=219.6

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE--EEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             78797999996999899999389939999879993--8998644998579999911899619999957990999988988
Q 002782          101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK  178 (882)
Q Consensus       101 h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~  178 (882)
                      ...||+|++|+|++++||+|+.|+.|++||..+++  ++..+++|.++|.+++|+|+++.  |++++.|+.|++||+.++
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~--l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR--IVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE--EEEEETTSCEEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCE--EEEEECCCEEEEEEECCC
T ss_conf             998838999989999999994889899998889978999995588998889999799999--999979993999862033


Q ss_pred             EE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             37--9883376426699999069999999957995999705886023431374306578962999986532321000001
Q 002782          179 KC--VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  256 (882)
Q Consensus       179 ~~--~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (882)
                      ..  ...+.+|...|+++.|+|+++.+++++.|+.+++|++........                               
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-------------------------------  132 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-------------------------------  132 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCC-------------------------------
T ss_conf             2110012232211000111111121100000257630254420334331-------------------------------


Q ss_pred             HCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCEEEEEEECCC
Q ss_conf             00246643099997399839999788850664027851221013776765149998069981799970880899971136
Q 002782          257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  336 (882)
Q Consensus       257 ~~~~~~~~~~~~~~~~~g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  336 (882)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (371)
T d1k8kc_         133 --------------------------------------------------------------------------------  132 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEE
Q ss_conf             63101034343523558734787884789968999973883899969995023563088742489653230499789999
Q 002782          337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  416 (882)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  416 (882)
                                                                         .......|...+.+++  ++|++.. +++
T Consensus       133 ---------------------------------------------------~~~~~~~~~~~v~~v~--~~p~~~~-l~s  158 (371)
T d1k8kc_         133 ---------------------------------------------------CKHIKKPIRSTVLSLD--WHPNSVL-LAA  158 (371)
T ss_dssp             ---------------------------------------------------EEEECTTCCSCEEEEE--ECTTSSE-EEE
T ss_pred             ---------------------------------------------------CCCCCCCCCCCCCCCC--CCCCCCC-EEC
T ss_conf             ---------------------------------------------------1100101112221111--1111111-000


Q ss_pred             EECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             63698299994899547865405433389999815898199983089908998637999997775432100100102788
Q 002782          417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  496 (882)
Q Consensus       417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (882)
                      ++.|+.+++|+.............          +                 |+...        ...........|...
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~----------~-----------------~~~~~--------~~~~~~~~~~~~~~~  203 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPT----------P-----------------WGSKM--------PFGELMFESSSSCGW  203 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCB----------T-----------------TBSCC--------CTTCEEEECCCCSSC
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCC----------C-----------------CCCCC--------CCEEEEEECCCCCCC
T ss_conf             134767999840157643100122----------1-----------------11111--------110112440476674


Q ss_pred             EEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf             04999828996899971899389995899616999965457668999937998999951898099996699922467406
Q 002782          497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  576 (882)
Q Consensus       497 i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  576 (882)
                      +.+++|+|+++++++++.|+.|++||+.++..+..+.+|..+|.+++|+|+++++++|. |+.+++|..........+.+
T Consensus       204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~  282 (371)
T d1k8kc_         204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGG  282 (371)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECC
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEE
T ss_conf             78987512332100001478605886410121000001466520365469997999981-99267877608986288720


Q ss_pred             CCCCEEEE---EEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCC----CEEEEEECCCCEEEEEC
Q ss_conf             76788999---998589999996469809999768881677722577746899992799----79999728997999987
Q 002782          577 HTSSVLRA---SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT----EMFATGGSDALVNLWHD  649 (882)
Q Consensus       577 h~~~v~~~---~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~----~~l~s~~~dg~i~iw~~  649 (882)
                      +.......   ..+.... +  ...+........ ..........|.+.|.++++.+.+    ..++|+|.||.|++|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         283 RLDVPKQSSQRGLTARER-F--QNLDKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             CCCCC--------CHHHH-H--HHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EECCCCCCCCCCCCCEEE-E--ECCCCEEEEECC-CCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEEC
T ss_conf             206765421246220016-8--506520587124-556614125556988999994899865679999918993999969


Q ss_pred             CC
Q ss_conf             97
Q 002782          650 ST  651 (882)
Q Consensus       650 ~~  651 (882)
                      .+
T Consensus       359 ~~  360 (371)
T d1k8kc_         359 RS  360 (371)
T ss_dssp             HH
T ss_pred             CC
T ss_conf             86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-35  Score=244.25  Aligned_cols=80  Identities=33%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             0456532898639999985899989999689829999889880678751-378797999996999899999389939999
Q 002782           51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHPSGGLLATAGADRKVLVW  129 (882)
Q Consensus        51 ~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~i~fs~~~~~las~~~dg~i~vw  129 (882)
                      ++.+.+.||...|++++|+||+++|++|+.||.|++||+.+++++..+. +|..+|.+++|+|++.++ +++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred             CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEE
T ss_conf             61368488887828999979999999990899299999999968899837887748998840331121-02310268873


Q ss_pred             EC
Q ss_conf             87
Q 002782          130 DV  131 (882)
Q Consensus       130 d~  131 (882)
                      +.
T Consensus        82 ~~   83 (299)
T d1nr0a2          82 PA   83 (299)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             16

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-34  Score=239.61  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=41.3

Q ss_pred             CEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf             9389986449985799999118996199999579909999889883798833-764266999990699999999579959
Q 002782          134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVV  212 (882)
Q Consensus       134 ~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i  212 (882)
                      |...+.+.||.+.|++++|+|+++.  |++|+.||.|++||+.++++...+. .|...|++++|+|++. +++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~--l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKT--LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCCCE--EEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEE
T ss_conf             8613684888878289999799999--999908992999999999688998378877489988403311-2102310268


Q ss_pred             EEEECC
Q ss_conf             997058
Q 002782          213 NLWDLR  218 (882)
Q Consensus       213 ~iwd~~  218 (882)
                      ++|+..
T Consensus        79 ~~~~~~   84 (299)
T d1nr0a2          79 KVVPAG   84 (299)
T ss_dssp             EEECSS
T ss_pred             EEECCC
T ss_conf             873167

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-34  Score=237.42  Aligned_cols=220  Identities=21%  Similarity=0.266  Sum_probs=175.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCEEEE--EECCCC--CEEEEECCC-CCCEEEEEECC--CCCEE
Q ss_conf             984453334353001300387469946998999973891999--996898--045653289-86399999858--99989
Q 002782            3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINI--VDLSNA--SIKSTIEGG-SDTITALALSP--DDKLL   75 (882)
Q Consensus         3 ~~~~~~~~~~~~~~~~~y~g~~ia~s~dg~~la~~~~~~I~i--~d~~~~--~~~~~l~~~-~~~I~~l~~sp--dg~~l   75 (882)
                      ++.|++.+++.|.-.+.+. .+++|+|+|+.+++++++.+.+  |+....  .....+.+| ...|++++|+|  ++.+|
T Consensus         2 ~~~l~~~~p~~p~t~~~~~-t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1           2 SISLKEIIPPQPSTQRNFT-THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CEEEEEEECCCCCCCTTCC-CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEE
T ss_conf             6210335698698879984-799998997999999699879999768888765028990789998899998117999799


Q ss_pred             EEEECCCCEEEEECCCCEEE--------EEEECCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEEECCCC
Q ss_conf             99968982999988988067--------875137879799999699989999938--99399998799938998644998
Q 002782           76 FSSGHSREIRVWDLSTLKCL--------RSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKG  145 (882)
Q Consensus        76 as~~~dg~i~iwd~~~~~~~--------~~~~~h~~~V~~i~fs~~~~~las~~~--dg~i~vwd~~~~~~~~~~~~h~~  145 (882)
                      |+|+.||+|++||+..+...        ..+..|.++|.+++|+++++++++++.  ++.+.+|+++++.++..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf             99948997798540588621565100254113656737799989998822010012440478885023311001200123


Q ss_pred             CEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEE---CCCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCE
Q ss_conf             579999911899619999957990999988988379883---376426699999069-9999999579959997058860
Q 002782          146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       146 ~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l---~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~  221 (882)
                      .|.+++|+|++. .++++++.|+.+++|+....+....+   ..|...|.+++|+|+ +.++++++.|+.|++||+.+++
T Consensus       161 ~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         161 RINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             CEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             CCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCC
T ss_conf             432111123432-0688862111221111221100000000157777527763034531000011233210134300122


Q ss_pred             EEE
Q ss_conf             234
Q 002782          222 CKL  224 (882)
Q Consensus       222 ~~~  224 (882)
                      ...
T Consensus       240 ~~~  242 (325)
T d1pgua1         240 FLK  242 (325)
T ss_dssp             EEE
T ss_pred             CCC
T ss_conf             211

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=228.16  Aligned_cols=154  Identities=15%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             EEEEECCCCCEEEEEECCC-CEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCCEEEEECCCCE--
Q ss_conf             9999858999899996898-2999988988--0678751378-7979999969--99899999389939999879993--
Q 002782           64 TALALSPDDKLLFSSGHSR-EIRVWDLSTL--KCLRSWKGHD-GPAIGMACHP--SGGLLATAGADRKVLVWDVDGGF--  135 (882)
Q Consensus        64 ~~l~~spdg~~las~~~dg-~i~iwd~~~~--~~~~~~~~h~-~~V~~i~fs~--~~~~las~~~dg~i~vwd~~~~~--  135 (882)
                      ++++|+|+++.|+.++.+. .|+.|+....  ..+..+.+|. ..|++++|+|  ++.+|++|+.||+|++||+..+.  
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~  100 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES  100 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCE
T ss_conf             79999899799999969987999976888876502899078999889999811799979999948997798540588621


Q ss_pred             ------EEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEEC
Q ss_conf             ------8998644998579999911899619999957990999988988379883376426699999069999-999957
Q 002782          136 ------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST-LISAGR  208 (882)
Q Consensus       136 ------~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~-l~s~~~  208 (882)
                            ....+..|.++|.+++|++++.....++++.++.+.+|++.+++++..+.+|...|.+++|+|++.+ +++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  180 (325)
T d1pgua1         101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  180 (325)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             EEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             56510025411365673779998999882201001244047888502331100120012343211112343206888621


Q ss_pred             CCEEEEEEC
Q ss_conf             995999705
Q 002782          209 DKVVNLWDL  217 (882)
Q Consensus       209 dg~i~iwd~  217 (882)
                      |+.+++|+.
T Consensus       181 d~~v~~~d~  189 (325)
T d1pgua1         181 DGSVVFYQG  189 (325)
T ss_dssp             TTEEEEEET
T ss_pred             CCCCCCCCC
T ss_conf             112211112

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-32  Score=223.74  Aligned_cols=188  Identities=13%  Similarity=0.223  Sum_probs=113.0

Q ss_pred             CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCC---
Q ss_conf             33389999815898199983089908998637999997775432100100102788049998289968999718993---
Q 002782          441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT---  517 (882)
Q Consensus       441 ~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~---  517 (882)
                      ...+.+++|+|++  ++++|+.|++|++||+.+...    .........+..|..+|++++|+|++++|++|+.|++   
T Consensus       184 ~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~----~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         184 SQFATSVDISERG--LIATGFNNGTVQISELSTLRP----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCC--EEEEEECCCCEEEEEECCCCC----CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCE
T ss_conf             9867899978999--899993898299986023321----1000011111242563877004665320112428988421


Q ss_pred             EEEEECCCCEEEEEEE-------------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEE--
Q ss_conf             8999589961699996-------------5457668999937998999951898099996699922467406767889--
Q 002782          518 ACVWRLPDLVSVVTFR-------------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL--  582 (882)
Q Consensus       518 i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~--  582 (882)
                      |++||+.++..+..+.             +|...|++++|+|++++|++++.|++|++||+.+++++.++.+|.+.|.  
T Consensus       258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             EEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf             00103532134443115666643102320235866600138988806987799989999999997999998868761377


Q ss_pred             --EEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             --9999858999999646980999976888167772257774689999279979999728997999987
Q 002782          583 --RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  649 (882)
Q Consensus       583 --~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~  649 (882)
                        .+.|++++..+++++   ...+|....+.....            .......+++++.|+.|++|+.
T Consensus       338 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGM------------GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             GGCCCBCTTSCBCSSCC---EEEEEEECTTTSBST------------TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCEEEECCCCCEEEECC---CCEEEECCCCCEECC------------CCCCCCEEEEEECCCEEEEEEC
T ss_conf             34899999999999831---246998866766312------------3688997999991990899908

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.1e-32  Score=226.70  Aligned_cols=190  Identities=17%  Similarity=0.173  Sum_probs=163.6

Q ss_pred             EEECC-CCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCEEEEEEECC
Q ss_conf             69946-99899997389199999689804565328986399999858999899996898--2999988988067875137
Q 002782           25 LVVSS-DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSR--EIRVWDLSTLKCLRSWKGH  101 (882)
Q Consensus        25 ia~s~-dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg--~i~iwd~~~~~~~~~~~~h  101 (882)
                      -.||| ||+++|++..+.|.+||..++..++.  +|...|++++|||||++|++++.+.  .|++||+.+++.. .+..|
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~   84 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN   84 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             CCCCCCCCCEEEEEECCEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECC
T ss_conf             51468899999999899699998999948991--6999888899989999999999289989999989999488-75089


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEE----------ECCCCEE
Q ss_conf             879799999699989999938993999987999389986449985799999118996199999----------5799099
Q 002782          102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----------SDDATVR  171 (882)
Q Consensus       102 ~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg----------~~dg~I~  171 (882)
                      ...|.+++|+|++++|++++.++.+++|+..++.....+..|...+.+++|+|+++.  ++.+          ..++.++
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~--la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF--IAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE--EEEEEEECSSTTCSCCEEEEE
T ss_pred             CCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEE--EEEECCCCCCCEEECCCCCEE
T ss_conf             712774121145432100011111000001222100000013552023012132256--652123312110002565426


Q ss_pred             EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf             9988988379883376426699999069999999957995999705886
Q 002782          172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       172 iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  220 (882)
                      +|+..+++.... ..+...+..+.|+|+|++|++++.++.+.+|+....
T Consensus       163 v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         163 VYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             EECCCCCCEEEE-CCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf             630455713530-354322110012577999999959985575333544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=7.3e-31  Score=216.44  Aligned_cols=214  Identities=12%  Similarity=0.051  Sum_probs=141.0

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCEEEEEECC-EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf             333435300130038746994699899997389-1999996898045653289863999998589998999968982999
Q 002782            8 KSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV   86 (882)
Q Consensus         8 ~~~~~~~~~~~~y~g~~ia~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~i   86 (882)
                      .+|.......+....-..+.+++.-++++..++ .|.+||..+++++..+..+ ..+..++|||||+++++++.|+.+.+
T Consensus         9 ~~w~v~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~   87 (432)
T d1qksa2           9 ESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNM   87 (432)
T ss_dssp             HHCEESSCGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             HCEEEECCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEE
T ss_conf             03368236434787311547878289999769997999989998399997379-97137998899999999828999789


Q ss_pred             EECCCCEE--EEEE---ECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCEEEEEEECC-----------CCCEEE
Q ss_conf             98898806--7875---1378797999996999899-99938993999987999389986449-----------985799
Q 002782           87 WDLSTLKC--LRSW---KGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGH-----------KGVVSS  149 (882)
Q Consensus        87 wd~~~~~~--~~~~---~~h~~~V~~i~fs~~~~~l-as~~~dg~i~vwd~~~~~~~~~~~~h-----------~~~v~~  149 (882)
                      ||+.+++.  +..+   .+|.+.+.+..|+|||++| ++++.++.+.+||..+++++..+..+           .+....
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             EEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEE
T ss_conf             98108981288998448898776984321888888999817898279990765542254024776435220168885058


Q ss_pred             EEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEE
Q ss_conf             999118996199999579909999889883798833-76426699999069999999957-995999705886023
Q 002782          150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCK  223 (882)
Q Consensus       150 i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~  223 (882)
                      +.++|++.. ++++...++.|.+|+..+.+...... .+...+..+.|+|+|+++++++. ++.+.+++....+..
T Consensus       168 v~~s~dg~~-~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         168 ILASHYRPE-FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEECSSSSE-EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEECCCCCE-EEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEE
T ss_conf             998789998-999981688299998437875227998336754265388988799995166636777614452688

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-29  Score=207.90  Aligned_cols=155  Identities=24%  Similarity=0.441  Sum_probs=75.7

Q ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             65328986399999858999899996898299998898806787513787979999969998999993899399998799
Q 002782           54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG  133 (882)
Q Consensus        54 ~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~  133 (882)
                      .....|...|+|++  +|+++||+|+.||.|++||+.+++++.++++|.++|.+++|  ++++|++|+.|+.|++|++..
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             ECCCCCCCCEEEEE--ECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCC
T ss_conf             43289999889998--76999999928993999999999199999267787763423--630021001110110000024


Q ss_pred             CEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCE---EEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             9389986449985799999118996199999579909999889883---7988337642669999906999999995799
Q 002782          134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       134 ~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~---~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      +........+......  +.+...  .++++..++.+.+|+.....   ....+..|...+..+.+.+  ..+++++.|+
T Consensus        85 ~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~  158 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLH--LRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDR  158 (293)
T ss_dssp             CCEEEEECCCCSCEEE--EECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTS
T ss_pred             CCCCCCCCCCCCCCCC--CCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCC
T ss_conf             6410011111100001--111110--000013566306861344544421210001135431100000--2201106998


Q ss_pred             EEEEEECC
Q ss_conf             59997058
Q 002782          211 VVNLWDLR  218 (882)
Q Consensus       211 ~i~iwd~~  218 (882)
                      .+++|+..
T Consensus       159 ~i~~~d~~  166 (293)
T d1p22a2         159 TIKVWNTS  166 (293)
T ss_dssp             EEEEEETT
T ss_pred             CEEEECCC
T ss_conf             60410078

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=6.9e-31  Score=216.57  Aligned_cols=368  Identities=11%  Similarity=0.005  Sum_probs=214.0

Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE--EEEEE---CC
Q ss_conf             58999899996898299998898806787513787979999969998999993899399998799938--99864---49
Q 002782           69 SPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFK---GH  143 (882)
Q Consensus        69 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~--~~~~~---~h  143 (882)
                      +++.-++++.+.+|.|.+||..+++++..+..+ ..+..++|||||+++++++.|+.+.+||+.++..  ...++   +|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf             878289999769997999989998399997379-9713799889999999982899978998108981288998448898


Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCEE
Q ss_conf             98579999911899619999957990999988988379883376426699999069999999-95799599970588602
Q 002782          144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSC  222 (882)
Q Consensus       144 ~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~  222 (882)
                      .+.+.+..|+||++. ++++++.++.|++||..+++++..+..+...+....+.+++...+. .+.||...         
T Consensus       108 ~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~---------  177 (432)
T d1qksa2         108 RSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF---------  177 (432)
T ss_dssp             EEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE---------
T ss_pred             CCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEE---------
T ss_conf             776984321888888-9998178982799907655422540247764352201688850589987899989---------


Q ss_pred             EEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCC
Q ss_conf             34313743065789629999865323210000010024664309999739983999978885066402785122101377
Q 002782          223 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD  302 (882)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~w~~~~~~~~~~~~~~~~~~~~~~~  302 (882)
                                                                  +++...+                             
T Consensus       178 --------------------------------------------~vs~~~~-----------------------------  184 (432)
T d1qksa2         178 --------------------------------------------IVNVKET-----------------------------  184 (432)
T ss_dssp             --------------------------------------------EEEETTT-----------------------------
T ss_pred             --------------------------------------------EEEECCC-----------------------------
T ss_conf             --------------------------------------------9998168-----------------------------


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             67651499980699817999708808999711366310103434352355873478788478996899997388389996
Q 002782          303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  382 (882)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  382 (882)
                                                                                               +.+.+|+
T Consensus       185 -------------------------------------------------------------------------~~i~~~d  191 (432)
T d1qksa2         185 -------------------------------------------------------------------------GKILLVD  191 (432)
T ss_dssp             -------------------------------------------------------------------------TEEEEEE
T ss_pred             -------------------------------------------------------------------------CEEEEEE
T ss_conf             -------------------------------------------------------------------------8299998


Q ss_pred             CCCCEEEEEEE-CCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCCE
Q ss_conf             99950235630-8874248965323049978999963698299994899547865405-----43338999981589819
Q 002782          383 LSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-----HMGAVGAVAFSKKLQNF  456 (882)
Q Consensus       383 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~s~~~~~~  456 (882)
                      ..+.+...... .+...+..+.  ++|+++.++++...++.+.+++..+.........     |........+...+...
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~--~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGG--LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCCE--ECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEE
T ss_conf             4378752279983367542653--88988799995166636777614452688872148622456766410148988310


Q ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCC
Q ss_conf             99830899089986379999977754321001001027880499982899689997189938999589961699996545
Q 002782          457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK  536 (882)
Q Consensus       457 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~  536 (882)
                      ......++.+.+|.....              ....+...+....++|++..+++++.+...++|......      .|.
T Consensus       270 ~~~~lg~~~v~~~~~~~~--------------~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~  329 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDPE--------------GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEA  329 (432)
T ss_dssp             EEEBSSSSEEEEEECCTT--------------TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSH
T ss_pred             CCCCCCCCEEEECCCCCC--------------CCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCC
T ss_conf             213568835876245665--------------554656577799886899768887268864102112678------887


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEE-----CCCEEEEEECCCCE
Q ss_conf             7668999937998999951898099996699922467406767889999985899999964-----69809999768881
Q 002782          537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-----ADGLVKLWTVRTGE  611 (882)
Q Consensus       537 ~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~dg~i~iwd~~~~~  611 (882)
                      ....++++ ||++.+++++.|+.+++|++.++..+   ..|...+.+++|+|||++++.+.     .+|.|.|||.++++
T Consensus       330 ~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         330 EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CEEEEEEE-EECHHHCCCCCCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCE
T ss_conf             70359999-96246104556784486334344445---789986897679899999999970488888868999999955


Q ss_pred             EEEEECCC
Q ss_conf             67772257
Q 002782          612 CIATYDKH  619 (882)
Q Consensus       612 ~~~~~~~h  619 (882)
                      ....+.+.
T Consensus       406 ~~~~i~~~  413 (432)
T d1qksa2         406 LKHVIKDE  413 (432)
T ss_dssp             EEEEECCT
T ss_pred             EEEEECCC
T ss_conf             88684688

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-30  Score=210.49  Aligned_cols=143  Identities=28%  Similarity=0.440  Sum_probs=72.9

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEE------CCCCCEEEEEECCCCCEEEEEECCCC---EEEEEC
Q ss_conf             880499982899689997189938999589961699996------54576689999379989999518980---999966
Q 002782          495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSPVDQVVITASGDKT---IKIWSI  565 (882)
Q Consensus       495 ~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~------~~~~~v~~i~~s~~~~~l~s~~~d~~---i~iwd~  565 (882)
                      ..+++++|+|++ ++++|+.|++|++||+.+++++..+.      +|..+|.+++|+|++++|++++.|++   |++||+
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCC
T ss_conf             867899978999-8999938982999860233211000011111242563877004665320112428988421001035


Q ss_pred             CCCCEEEEEE-------------CCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE----EEEE
Q ss_conf             9992246740-------------6767889999985899999964698099997688816777225777468----9999
Q 002782          566 SDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW----ALAV  628 (882)
Q Consensus       566 ~~~~~~~~~~-------------~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~----~l~~  628 (882)
                      .++.++..+.             +|.+.|++++|+|++++|++++.|+.|++||+.+++++.++.+|.+.|.    .++|
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~  343 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV  343 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred             CCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf             32134443115666643102320235866600138988806987799989999999997999998868761377348999


Q ss_pred             CCCCCEEEEE
Q ss_conf             2799799997
Q 002782          629 GKKTEMFATG  638 (882)
Q Consensus       629 s~~~~~l~s~  638 (882)
                      ++++..++++
T Consensus       344 ~~~~~~~~~~  353 (393)
T d1sq9a_         344 DEHGDSLAEP  353 (393)
T ss_dssp             CTTSCBCSSC
T ss_pred             CCCCCEEEEC
T ss_conf             9999999983

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-30  Score=214.94  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE---EEEECCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf             67875137879799999699989999938993999987999389---986449985799999118996199999579909
Q 002782           94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV  170 (882)
Q Consensus        94 ~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I  170 (882)
                      .+....+|+..|++++|+|++++||+|+.|++|++||+..+...   ....+|.++|.+++|+|++. .++++|+.||.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSCE
T ss_pred             EEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCC-CEEEECCCCCCE
T ss_conf             5976889989788899958999999997999299997569986368988558999889999958999-789981265311


Q ss_pred             EEEECCCCEEEEEECCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf             9998898837988337642-66999990699999999579959997058
Q 002782          171 RVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLR  218 (882)
Q Consensus       171 ~iwd~~~~~~~~~l~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  218 (882)
                      ++|++...........+.. ......+.++...+++++.++.+++||++
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             4542044320000011111111111111111111110122211102023

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-28  Score=201.86  Aligned_cols=112  Identities=21%  Similarity=0.480  Sum_probs=49.7

Q ss_pred             EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             51378797999996999899999389939999879993899864499857999991189961999995799099998898
Q 002782           98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA  177 (882)
Q Consensus        98 ~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~  177 (882)
                      ...|...|+|++|  ++++||+|+.||.|++||+.+++++..+.+|.+.|.+++|.+  +  +|++|+.||.|++|++..
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~--~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R--VIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S--EEEEEETTSCEEEEESSS
T ss_pred             CCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECCC--C--EEECCCCCCCCCCCCCCC
T ss_conf             2899998899987--699999992899399999999919999926778776342363--0--021001110110000024


Q ss_pred             CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             8379883376426699999069999999957995999705
Q 002782          178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       178 ~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  217 (882)
                      +........+.....  .+.+....++++..++.+.+|+.
T Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          85 GEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             CCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEEC
T ss_pred             CCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCEEEEEC
T ss_conf             641001111110000--11111100000135663068613

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.3e-30  Score=209.77  Aligned_cols=103  Identities=10%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             CEEEEEEECCCCCEEEEEECCCCCEEEE-------EECCCCEEEEECCCCCEEEEEE---------CCCCCEEEEEEEEC
Q ss_conf             6169999654576689999379989999-------5189809999669992246740---------67678899999858
Q 002782          526 LVSVVTFRGHKRGIWSVEFSPVDQVVIT-------ASGDKTIKIWSISDGSCLKTFE---------GHTSSVLRASFLTR  589 (882)
Q Consensus       526 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~s~~  589 (882)
                      .+....+.+|...+..++|+|++++|++       ++.|++|++||+.++++..++.         .+...+..++|+||
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             CEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCC
T ss_conf             25868986688763678748998618885067988022887999989878767089502110256778851898799999


Q ss_pred             CCEEEE-E----ECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE
Q ss_conf             999999-6----46980999976888167772257774689999279979
Q 002782          590 GAQIVS-C----GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM  634 (882)
Q Consensus       590 g~~l~s-~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~  634 (882)
                      |++++. +    +.+|.|++||.++++....+.++.      .++|+|.+
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~  416 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKF  416 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEE
T ss_pred             CCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEE
T ss_conf             999999972488889829999999873899987898------41999557

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.3e-31  Score=218.71  Aligned_cols=140  Identities=15%  Similarity=0.070  Sum_probs=121.3

Q ss_pred             EEEECC-CCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC--CCEEEEECCCCEEEEEEE
Q ss_conf             999858-99989999689829999889880678751378797999996999899999389--939999879993899864
Q 002782           65 ALALSP-DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD--RKVLVWDVDGGFCTHYFK  141 (882)
Q Consensus        65 ~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~d--g~i~vwd~~~~~~~~~~~  141 (882)
                      +-.||| ||+++|+++. |.|++||..++..+..  +|...|.+++|+|||++|++++.+  ..|++||..++... .+.
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             CCCCCCCCCCEEEEEEC-CEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEE
T ss_conf             05146889999999989-9699998999948991--6999888899989999999999289989999989999488-750


Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             499857999991189961999995799099998898837988337642669999906999999995799
Q 002782          142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       142 ~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .|...+.+++|+|+++.  +++++.++.+++|++.++++...+..|...+.+++|+|+|++|+.+..++
T Consensus        83 ~~~~~v~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKF--AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             CCCCSEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCC--CCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCC
T ss_conf             89712774121145432--10001111100000122210000001355202301213225665212331

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-30  Score=210.68  Aligned_cols=113  Identities=21%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEE-EECCCCCEEEEEECCC----------CCEEEEEECCCCEEE
Q ss_conf             78804999828996899971899389995899616999-9654576689999379----------989999518980999
Q 002782          494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPV----------DQVVITASGDKTIKI  562 (882)
Q Consensus       494 ~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~s~~----------~~~l~s~~~d~~i~i  562 (882)
                      ...+++++|+|++.+|++++.||.|++||+.++..... +.+|..+|.+++|+|.          +.++++|+.|++|++
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf             78536999516765211011111100000023321100011111111000001365410012678870276649995999


Q ss_pred             EECCC-CCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEEC
Q ss_conf             96699-9224674067678899999858999999646980999976
Q 002782          563 WSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  607 (882)
Q Consensus       563 wd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~  607 (882)
                      |++.. .+++..+.+|...|+++.|++++ .+++++.||.|++|++
T Consensus       242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             88899975899927878985899998999-8999979992999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.2e-29  Score=206.57  Aligned_cols=92  Identities=10%  Similarity=0.079  Sum_probs=52.9

Q ss_pred             HHHHHHCCCCEEEEEECCCCCEEEE-------ECCCCCEEEEECCCCEEEEEEE---------CCCCCEEEEEECCCCCE
Q ss_conf             0100102788049998289968999-------7189938999589961699996---------54576689999379989
Q 002782          487 KAVVAAHGKDINSLAVAPNDSLVCT-------GSQDRTACVWRLPDLVSVVTFR---------GHKRGIWSVEFSPVDQV  550 (882)
Q Consensus       487 ~~~~~~~~~~i~~i~~s~~~~~la~-------~s~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~i~~s~~~~~  550 (882)
                      ...+.+|...+..++|+|+++++++       +..+++|++||+.+++...++.         .+...+.+++|||||++
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCE
T ss_conf             68986688763678748998618885067988022887999989878767089502110256778851898799999999


Q ss_pred             EEEE-----ECCCCEEEEECCCCCEEEEEECCC
Q ss_conf             9995-----189809999669992246740676
Q 002782          551 VITA-----SGDKTIKIWSISDGSCLKTFEGHT  578 (882)
Q Consensus       551 l~s~-----~~d~~i~iwd~~~~~~~~~~~~h~  578 (882)
                      ++.+     +.++.|++||..+++....+.++.
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             EEEEEECCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf             999972488889829999999873899987898

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-30  Score=209.42  Aligned_cols=112  Identities=14%  Similarity=0.242  Sum_probs=44.7

Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE-EEECCCCCEEEEEEEEC----------CCEEEEEECCCEEEE
Q ss_conf             5766899993799899995189809999669992246-74067678899999858----------999999646980999
Q 002782          536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-TFEGHTSSVLRASFLTR----------GAQIVSCGADGLVKL  604 (882)
Q Consensus       536 ~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~----------g~~l~s~~~dg~i~i  604 (882)
                      ..++++++|+|++.+|++++.|+.|++||+.++.... .+.+|...|.+++|+|.          +.++++++.|+.|++
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf             78536999516765211011111100000023321100011111111000001365410012678870276649995999


Q ss_pred             EECCC-CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             97688-816777225777468999927997999972899799998
Q 002782          605 WTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  648 (882)
Q Consensus       605 wd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~  648 (882)
                      |++.+ ++++..+.+|...|+++.|+|++ .|++++.|+.|++|+
T Consensus       242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf             88899975899927878985899998999-899997999299999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-29  Score=204.82  Aligned_cols=168  Identities=14%  Similarity=0.131  Sum_probs=124.0

Q ss_pred             CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE---EEEECCCCCEEEEEECCCC-CEEEEEECCCCE
Q ss_conf             045653289863999998589998999968982999988988067---8751378797999996999-899999389939
Q 002782           51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL---RSWKGHDGPAIGMACHPSG-GLLATAGADRKV  126 (882)
Q Consensus        51 ~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~h~~~V~~i~fs~~~-~~las~~~dg~i  126 (882)
                      +.+...++|++.|++++|+|++++||+|+.||+|++||+.++...   ....+|..+|.+++|+|++ .+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf             75976889989788899958999999997999299997569986368988558999889999958999789981265311


Q ss_pred             EEEECCCCEEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCEEEEECCCCE----EEEEECCCC--CCEEEEEECCC
Q ss_conf             999879993899864499857-99999118996199999579909999889883----798833764--26699999069
Q 002782          127 LVWDVDGGFCTHYFKGHKGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATLDKHF--SRVTSMAITSD  199 (882)
Q Consensus       127 ~vwd~~~~~~~~~~~~h~~~v-~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~----~~~~l~~h~--~~v~~l~~s~~  199 (882)
                      ++|++..+........+.... ....+.++..  .+++++.++.+++||+..+.    .......+.  .....+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECC
T ss_conf             45420443200000111111111111111111--1111012221110202344433023000243001200000100016


Q ss_pred             CCEEEEEECCCEEEEEECCCC
Q ss_conf             999999957995999705886
Q 002782          200 GSTLISAGRDKVVNLWDLRDY  220 (882)
Q Consensus       200 ~~~l~s~~~dg~i~iwd~~~~  220 (882)
                      +..+++++.|+.+++|++...
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCC
T ss_pred             CCCEEEECCCCCEEEEECCCC
T ss_conf             870246517984788760567

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.95  E-value=2.3e-21  Score=153.40  Aligned_cols=158  Identities=15%  Similarity=-0.024  Sum_probs=90.8

Q ss_pred             CCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------C
Q ss_conf             8986399999858999899996-----898299998898806787513787979999969998999993----------8
Q 002782           58 GGSDTITALALSPDDKLLFSSG-----HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG----------A  122 (882)
Q Consensus        58 ~~~~~I~~l~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~----------~  122 (882)
                      .+..++..++++|||+.+++..     ..+.|.+||..+++.+.++..+..+  .++|+|||+++++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCC
T ss_conf             6789865630189997899973422578765999989999799999579886--07986899989999605775321245


Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCE-------EEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf             9939999879993899864499857-------999991189961999995799099998898837988337642669999
Q 002782          123 DRKVLVWDVDGGFCTHYFKGHKGVV-------SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA  195 (882)
Q Consensus       123 dg~i~vwd~~~~~~~~~~~~h~~~v-------~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~  195 (882)
                      ++.|.+||..+++.+..+..+....       ..+.|+++++..++.....++.+.+|+....+.....    ....++.
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH  171 (373)
T ss_pred             CEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEEE
T ss_conf             318999977789388897268851368516897089985899379999869874677623687289982----4520699


Q ss_pred             ECCCCCEE-EEEECCCEEEEEECCCCE
Q ss_conf             90699999-999579959997058860
Q 002782          196 ITSDGSTL-ISAGRDKVVNLWDLRDYS  221 (882)
Q Consensus       196 ~s~~~~~l-~s~~~dg~i~iwd~~~~~  221 (882)
                      ++++++.+ ++.+.|+.+.+|+.....
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCE
T ss_conf             962899199999479939999747742

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=2.4e-22  Score=159.85  Aligned_cols=183  Identities=21%  Similarity=0.322  Sum_probs=117.2

Q ss_pred             EEEEEE--CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf             999973--89199999689804565328986399999858999899-996898299998898806787513787979999
Q 002782           33 FIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA  109 (882)
Q Consensus        33 ~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~la-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~  109 (882)
                      |++++.  ++.|.+||+.+++.++++... .....++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCC
T ss_conf             99999789998999999999599999889-9836999928989999997899989999999894103200024-643110


Q ss_pred             ECCCCCEEEE-EECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf             9699989999-938993999987999389986449985799999118996199999579909999889883798833764
Q 002782          110 CHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF  188 (882)
Q Consensus       110 fs~~~~~las-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~  188 (882)
                      |++++.++++ +..++.+.+|+..++.....+.. .....++.|+|++.. +++++..++.+.+|+..+......+..+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVINTVSVG-  157 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCCE-EEEEECCCCCEEEEECCCCCEEEECCCC-
T ss_conf             0011111111111110011001243024320244-444237876058971-5542011110011000146303531567-


Q ss_pred             CCEEEEEECCCCCEEEEEECC-CEEEEEECCCC
Q ss_conf             266999990699999999579-95999705886
Q 002782          189 SRVTSMAITSDGSTLISAGRD-KVVNLWDLRDY  220 (882)
Q Consensus       189 ~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~~~  220 (882)
                      ..+..+.+++++..+++++.+ +.+.+|+....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCEEEECCCCCCCCCCCCCCE
T ss_conf             884288860465401310121111111111100

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=6.4e-22  Score=157.02  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             EEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf             996898299998898806787513787979999969998999-9938993999987999389986449985799999118
Q 002782           77 SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD  155 (882)
Q Consensus        77 s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~la-s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~  155 (882)
                      +.+.++.|.+||+.+++.+.++... ..+..++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .+..++|+++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~   84 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCC
T ss_conf             9789998999999999599999889-9836999928989999997899989999999894103200024-6431100011


Q ss_pred             CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC
Q ss_conf             9961999995799099998898837988337642669999906999999995-7995999705886
Q 002782          156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDY  220 (882)
Q Consensus       156 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~  220 (882)
                      +.. +++++..++.+.+|+..+++....+..+ .....+.|+|++..++..+ .++.+.+|+..+.
T Consensus        85 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          85 GKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             SSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCC-CCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             111-1111111100110012430243202444-442378760589715542011110011000146

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=2.4e-24  Score=173.16  Aligned_cols=112  Identities=12%  Similarity=0.013  Sum_probs=69.6

Q ss_pred             EEEEECCCCCEEEEECCCCEEEEE-EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf             899971899389995899616999-9654576689999379989999518980999966999224674067678899999
Q 002782          508 LVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  586 (882)
Q Consensus       508 ~la~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  586 (882)
                      .++++..+..+.+|+..++..... +..+...+..+.+++++..++.... +.+.+||..+++.+..+. +...+.+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~  299 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAF  299 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             EEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEEC-CCCCEEEEEE
T ss_conf             57540478349999777883687876315660688897179978999429-838999899993999974-9997789999


Q ss_pred             EECCCEEEEEECCCEEEEEECCCCEEEEEECCCCC
Q ss_conf             85899999964698099997688816777225777
Q 002782          587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED  621 (882)
Q Consensus       587 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~  621 (882)
                      +|||+++++++.||.|++||+.+++.+.++..+.+
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf             68999999994899299999965879799988999

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=6.9e-25  Score=176.76  Aligned_cols=113  Identities=7%  Similarity=-0.063  Sum_probs=77.5

Q ss_pred             EEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECC
Q ss_conf             99983089908998637999997775432100100102788049998289968999718993899958996169999654
Q 002782          456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH  535 (882)
Q Consensus       456 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~  535 (882)
                      .+.++..+..+.+|+......         .......+...+..+.+++++..++... ++.+.+||..+++.+..+. +
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~  290 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKT---------HTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-L  290 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCE---------EEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-C
T ss_pred             EEEECCCCCEEEEEECCCCCE---------EEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEEC-C
T ss_conf             575404783499997778836---------8787631566068889717997899942-9838999899993999974-9


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf             57668999937998999951898099996699922467406767
Q 002782          536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  579 (882)
Q Consensus       536 ~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  579 (882)
                      ...+.+++|+|||+++++++.|+.|++||+.+++++.++..+.+
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf             99778999968999999994899299999965879799988999

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=6.1e-23  Score=163.81  Aligned_cols=149  Identities=15%  Similarity=0.148  Sum_probs=87.0

Q ss_pred             CEEEEEECCCCEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEEECCCCC---
Q ss_conf             98999968982999988988067875137--87979999969998999-9938993999987999389986449985---
Q 002782           73 KLLFSSGHSREIRVWDLSTLKCLRSWKGH--DGPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGHKGV---  146 (882)
Q Consensus        73 ~~las~~~dg~i~iwd~~~~~~~~~~~~h--~~~V~~i~fs~~~~~la-s~~~dg~i~vwd~~~~~~~~~~~~h~~~---  146 (882)
                      +|+++++.|+.|.+||+++++.+.++..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+...   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             69999767998999999999499999877889982379999998999999789994999999999298887247773125


Q ss_pred             --EEEEEEECCCCCCEEEEEE------------CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf             --7999991189961999995------------79909999889883798833764266999990699999999579959
Q 002782          147 --VSSILFHPDTDKSLLFSGS------------DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV  212 (882)
Q Consensus       147 --v~~i~f~~~~~~~~l~sg~------------~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i  212 (882)
                        +..++|+|+++.  ++++.            .++.+.+||..++.....+..+ ..+..++|+|+++++++++.+  +
T Consensus        82 ~~~~~v~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--L  156 (337)
T ss_dssp             ECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--E
T ss_pred             CCEEEEEECCCCCE--EEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCC-CCCEEEEECCCCCEEEEECCC--C
T ss_conf             40254898687757--999504776203420345552120356677598841456-872189986888889997177--5


Q ss_pred             EEEECCCCEEEEEE
Q ss_conf             99705886023431
Q 002782          213 NLWDLRDYSCKLTV  226 (882)
Q Consensus       213 ~iwd~~~~~~~~~~  226 (882)
                      .+|+..+.+....+
T Consensus       157 ~~~d~~~~~~~~~~  170 (337)
T d1pbyb_         157 HVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             CEEEEECCCEEEEE
T ss_conf             05663037278886

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=9.6e-24  Score=169.16  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             CCCCEEEEECCCCEEEEE-EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCE
Q ss_conf             899389995899616999-9654576689999379989999518980999966999224674067678899999858999
Q 002782          514 QDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ  592 (882)
Q Consensus       514 ~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~  592 (882)
                      .++.+.+|+..++..... +..+...+..+.++|++.+++.+  ++.+++||+.+++++..+. +...+.+++|+|||++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCE
T ss_conf             676179998688858889832887505888742661399973--5528999898896999974-8998899999789999


Q ss_pred             EEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf             99964698099997688816777225
Q 002782          593 IVSCGADGLVKLWTVRTGECIATYDK  618 (882)
Q Consensus       593 l~s~~~dg~i~iwd~~~~~~~~~~~~  618 (882)
                      |++++.||.|.+||..+++.+.++..
T Consensus       294 l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf             99994999299999998769899988

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.93  E-value=4.1e-20  Score=145.04  Aligned_cols=188  Identities=13%  Similarity=0.041  Sum_probs=126.1

Q ss_pred             CEEECCCCCEEEEEEC------CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCCEEEE
Q ss_conf             4699469989999738------9199999689804565328986399999858999899996----------89829999
Q 002782           24 PLVVSSDGSFIACACG------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVW   87 (882)
Q Consensus        24 ~ia~s~dg~~la~~~~------~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~----------~dg~i~iw   87 (882)
                      .++++|||+.+++...      ..|.+||..+++.+..+.++..+  .++|||||+++++++          .++.|.+|
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~  102 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf             630189997899973422578765999989999799999579886--079868999899996057753212453189999


Q ss_pred             ECCCCEEEEEEECCCCCE-------EEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
Q ss_conf             889880678751378797-------9999969998999993--8993999987999389986449985799999118996
Q 002782           88 DLSTLKCLRSWKGHDGPA-------IGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK  158 (882)
Q Consensus        88 d~~~~~~~~~~~~h~~~V-------~~i~fs~~~~~las~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~  158 (882)
                      |..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+....    .....++.|+|+++.
T Consensus       103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~  178 (373)
T d2madh_         103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPS  178 (373)
T ss_pred             ECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEE----ECCCEEEEEECCCCC
T ss_conf             7778938889726885136851689708998589937999986987467762368728998----245206999628991


Q ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCCC------CCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             199999579909999889883798833764------2669999906999999995799599970588
Q 002782          159 SLLFSGSDDATVRVWDLLAKKCVATLDKHF------SRVTSMAITSDGSTLISAGRDKVVNLWDLRD  219 (882)
Q Consensus       159 ~~l~sg~~dg~I~iwd~~~~~~~~~l~~h~------~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  219 (882)
                       .+++.+.|+.+.+|+...+........+.      .......+.+++. ++..+.++.+.+|+...
T Consensus       179 -~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         179 -TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISA  243 (373)
T ss_pred             -EEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCE-EEEECCCCEEEEEECCC
T ss_conf             -999994799399997477426678863003667530434588789942-99925896599997689

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.6e-20  Score=147.77  Aligned_cols=69  Identities=17%  Similarity=0.157  Sum_probs=39.6

Q ss_pred             CEEEEECCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf             389995899616999965457668999937998--9999518980999966999224674067678899999
Q 002782          517 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  586 (882)
Q Consensus       517 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  586 (882)
                      .|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|++||+.+++.++++.++......+.+
T Consensus       281 ~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             EEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEC
T ss_pred             EEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEE
T ss_conf             59998678884989966-899877999928999699999789998999999999899999286979658996

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.2e-19  Score=141.91  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             EEECCCCCEEEEEEC------CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEE
Q ss_conf             699469989999738------9199999689804565328986399999858999899996----------898299998
Q 002782           25 LVVSSDGSFIACACG------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWD   88 (882)
Q Consensus        25 ia~s~dg~~la~~~~------~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~----------~dg~i~iwd   88 (882)
                      .+.+|||+.+++...      +.|.+||..+++.+.++..+..+  .++|||||++|++++          .++.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf             76589999999982664777671999999999499999899998--5699489999999967776420158999899999


Q ss_pred             CCCCEEEEEEECCCCC-------EEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEEE
Q ss_conf             8988067875137879-------79999969998999993--89939999879993899864
Q 002782           89 LSTLKCLRSWKGHDGP-------AIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFK  141 (882)
Q Consensus        89 ~~~~~~~~~~~~h~~~-------V~~i~fs~~~~~las~~--~dg~i~vwd~~~~~~~~~~~  141 (882)
                      ..+++.+..+..+...       ...++|++++++++++.  .+..+.+|+..++..+..+.
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf             99997988980588640311798734999338871577327988204543057883766770

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.7e-17  Score=126.36  Aligned_cols=140  Identities=21%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             EEEECCCCEEEEECCCCEEEEEE--ECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEE---ECCCCCEEE
Q ss_conf             99968982999988988067875--13787979999969998999993-8993999987999389986---449985799
Q 002782           76 FSSGHSREIRVWDLSTLKCLRSW--KGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYF---KGHKGVVSS  149 (882)
Q Consensus        76 as~~~dg~i~iwd~~~~~~~~~~--~~h~~~V~~i~fs~~~~~las~~-~dg~i~vwd~~~~~~~~~~---~~h~~~v~~  149 (882)
                      ++++.++.|++|++.+...+..+  ..|.+.+..++|+|||++|++++ .|+.|.+|++........+   ..+...+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEE
T ss_conf             98789993899998399976999997579988689995897999999778996999999689870798530136998549


Q ss_pred             EEEECCCCCCEEEEEE-CCCCEEEEECCCCEEEEE--ECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEEC
Q ss_conf             9991189961999995-799099998898837988--3376426699999069999999957-995999705
Q 002782          150 ILFHPDTDKSLLFSGS-DDATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDL  217 (882)
Q Consensus       150 i~f~~~~~~~~l~sg~-~dg~I~iwd~~~~~~~~~--l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~  217 (882)
                      ++|+||++.  +++++ .++.+.+|+.........  ...+...+.++.++|++++++.++. +..+.+|+.
T Consensus        88 l~~spDg~~--l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          88 ISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             EEECCCCCE--EEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEE
T ss_conf             999599988--7420568883022001110000001003778531498863010131025655420568973

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.85  E-value=4.8e-18  Score=131.31  Aligned_cols=158  Identities=15%  Similarity=0.139  Sum_probs=109.8

Q ss_pred             CEEECCCCCEEEEEECCEEEEEECCCCCEEEEECC-----CCCCEEEEEECCCCCEEEEEEC---------CCCEEEEEC
Q ss_conf             46994699899997389199999689804565328-----9863999998589998999968---------982999988
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-----GSDTITALALSPDDKLLFSSGH---------SREIRVWDL   89 (882)
Q Consensus        24 ~ia~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~-----~~~~I~~l~~spdg~~las~~~---------dg~i~iwd~   89 (882)
                      .+.|.+|+++++. .++.+.+||+.+++....+..     +...|.++.|||||++|+.++.         ++.+.+||+
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEECCCCEEEEE-CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEEC
T ss_conf             7896899979997-599499998899978999701564431676540599898897999977710001046734999989


Q ss_pred             CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf             98806787513787979999969998999993899399998799938998644998579999911899619999957990
Q 002782           90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~  169 (882)
                      .+++. ..+..+...+..+.|||||+++|... ++.+.+|+..++........+...+             ...+..|..
T Consensus       100 ~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~-------------~~~g~~d~~  164 (470)
T d2bgra1         100 NKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI-------------IYNGITDWV  164 (470)
T ss_dssp             TTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------EEESBCCHH
T ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCC-------------CCCCCCCEE
T ss_conf             88851-31246874231010146764135751-4641379889994653210147774-------------053543201


Q ss_pred             EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             99998898837988337642669999906999999995799
Q 002782          170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK  210 (882)
Q Consensus       170 I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg  210 (882)
                      .             .....+....+.|+|||+.++....|.
T Consensus       165 ~-------------~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         165 Y-------------EEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             H-------------HHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             E-------------EEEECCCCCCCEECCCCCCCCEEEECC
T ss_conf             1-------------210047765307999987220268637

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.9e-17  Score=124.07  Aligned_cols=177  Identities=11%  Similarity=0.194  Sum_probs=99.2

Q ss_pred             CCEEEEEECCCCCE---EEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEEEEE---ECCCCCEEEEEEC
Q ss_conf             89199999689804---5653289863999998589998999968-982999988988067875---1378797999996
Q 002782           39 GESINIVDLSNASI---KSTIEGGSDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKCLRSW---KGHDGPAIGMACH  111 (882)
Q Consensus        39 ~~~I~i~d~~~~~~---~~~l~~~~~~I~~l~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~---~~h~~~V~~i~fs  111 (882)
                      ++.|++|++.+...   +..+ .+...+..++|||||++|++++. ++.|++|++........+   ..+...+..++|+
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD   91 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEC
T ss_conf             993899998399976999997-5799886899958979999997789969999996898707985301369985499995


Q ss_pred             CCCCEEEEEEC-CCCEEEEECCCCEEEEE--EECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEE-----
Q ss_conf             99989999938-99399998799938998--64499857999991189961999995799099998898837988-----
Q 002782          112 PSGGLLATAGA-DRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-----  183 (882)
Q Consensus       112 ~~~~~las~~~-dg~i~vwd~~~~~~~~~--~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~-----  183 (882)
                      |||++|++++. ++.+.+|+.........  ...+...+.++.|+|+++. ++.....+..+.+|+.........     
T Consensus        92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT-LWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEE-EECCCCCCCEEEEEEECCCCCCEEEECEE
T ss_conf             99988742056888302200111000000100377853149886301013-10256554205689732687410010001


Q ss_pred             -ECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEC
Q ss_conf             -337642669999906999999995-7995999705
Q 002782          184 -LDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDL  217 (882)
Q Consensus       184 -l~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~  217 (882)
                       ..........+.|++++..++... ..+...+|+.
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             EEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEE
T ss_conf             334038875279996020147862046672178851

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=1.4e-16  Score=121.64  Aligned_cols=111  Identities=11%  Similarity=0.035  Sum_probs=58.3

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCCEEEEE
Q ss_conf             999858999899996898299998898806787513-----7879799999699989999938---------99399998
Q 002782           65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHPSGGLLATAGA---------DRKVLVWD  130 (882)
Q Consensus        65 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~-----h~~~V~~i~fs~~~~~las~~~---------dg~i~vwd  130 (882)
                      .+.|.++++++..  .++.+.+||+.+++....+..     |...|.++.||||+++|++++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf             7896899979997--59949999889997899970156443167654059989889799997771000104673499998


Q ss_pred             CCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEE
Q ss_conf             799938998644998579999911899619999957990999988988379
Q 002782          131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV  181 (882)
Q Consensus       131 ~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~  181 (882)
                      +.++. ...+..+...+....|+||++.  ++. ..++.+.+|+..++...
T Consensus        99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~--ia~-~~~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          99 LNKRQ-LITEERIPNNTQWVTWSPVGHK--LAY-VWNNDIYVKIEPNLPSY  145 (470)
T ss_dssp             TTTTE-ECCSSCCCTTEEEEEECSSTTC--EEE-EETTEEEEESSTTSCCE
T ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCE--EEE-EECCCCEEEECCCCCEE
T ss_conf             98885-1312468742310101467641--357-51464137988999465

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.4e-15  Score=113.33  Aligned_cols=147  Identities=14%  Similarity=0.015  Sum_probs=79.5

Q ss_pred             CEEECCCCCEEEEE--E---CC-EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCCEEEE
Q ss_conf             46994699899997--3---89-199999689804565328986399999858999899996----------89829999
Q 002782           24 PLVVSSDGSFIACA--C---GE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVW   87 (882)
Q Consensus        24 ~ia~s~dg~~la~~--~---~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~----------~dg~i~iw   87 (882)
                      .++.++|++..+..  .   +. .+.++|..+++.+..+.++...  .++|+|||++|++++          .++.|.+|
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~  101 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF  101 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf             645589876126972045788621799708998377888578777--513989998899975567640103567869999


Q ss_pred             ECCCCEEEEEEECCCCC-------EEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             88988067875137879-------79999969998999993-89939999879993899864499857999991189961
Q 002782           88 DLSTLKCLRSWKGHDGP-------AIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS  159 (882)
Q Consensus        88 d~~~~~~~~~~~~h~~~-------V~~i~fs~~~~~las~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~  159 (882)
                      |..+++++..+..+...       ...++|+|||++|+++. .++.+.+||+.+++....+..+....    +.+++. .
T Consensus       102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~-~  176 (368)
T d1mdah_         102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAA-A  176 (368)
T ss_dssp             CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEET-T
T ss_pred             ECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE----ECCCCC-C
T ss_conf             89999383064378542102468864058878998999996899859999899893867860467523----746998-2


Q ss_pred             EEEEEECCCCEEEEECCC
Q ss_conf             999995799099998898
Q 002782          160 LLFSGSDDATVRVWDLLA  177 (882)
Q Consensus       160 ~l~sg~~dg~I~iwd~~~  177 (882)
                      .++..+.||.+.+|++..
T Consensus       177 ~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         177 THYLGSCPASLAASDLAA  194 (368)
T ss_dssp             EEECCCCTTSCEEEECCS
T ss_pred             EEEEECCCCCEEEEEECC
T ss_conf             399994899889998268

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.5e-15  Score=114.83  Aligned_cols=151  Identities=11%  Similarity=-0.146  Sum_probs=88.8

Q ss_pred             CCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCC
Q ss_conf             63999998589998999---96898--299998898806787513787979999969998999993----------8993
Q 002782           61 DTITALALSPDDKLLFS---SGHSR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG----------ADRK  125 (882)
Q Consensus        61 ~~I~~l~~spdg~~las---~~~dg--~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~----------~dg~  125 (882)
                      ++....+.+++++....   ...++  .+.+||..+++.+....++..+  .++|+|||+++++.+          .|+.
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf             9866645589876126972045788621799708998377888578777--51398999889997556764010356786


Q ss_pred             EEEEECCCCEEEEEEECCCCC-------EEEEEEECCCCCCEEEEE-ECCCCEEEEECCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             999987999389986449985-------799999118996199999-579909999889883798833764266999990
Q 002782          126 VLVWDVDGGFCTHYFKGHKGV-------VSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT  197 (882)
Q Consensus       126 i~vwd~~~~~~~~~~~~h~~~-------v~~i~f~~~~~~~~l~sg-~~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~s  197 (882)
                      |.+||..+++++..+..+...       ...++|+||++.  ++.+ ..++.+.+||+.+++....+..+.....   +.
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~--l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~  172 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HP  172 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EE
T ss_pred             EEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCE--EEEEECCCCEEEEEECCCCCEEEEEECCCCCEE---CC
T ss_conf             9999899993830643785421024688640588789989--999968998599998998938678604675237---46


Q ss_pred             CCCCEEEEEECCCEEEEEECC
Q ss_conf             699999999579959997058
Q 002782          198 SDGSTLISAGRDKVVNLWDLR  218 (882)
Q Consensus       198 ~~~~~l~s~~~dg~i~iwd~~  218 (882)
                      .....++..+.||.+..|++.
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECC
T ss_pred             CCCCEEEEECCCCCEEEEEEC
T ss_conf             998239999489988999826

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.69  E-value=3.7e-16  Score=118.79  Aligned_cols=145  Identities=14%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             30499789999636982999948995478654054333899998158981999830899089986379999977754321
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  485 (882)
                      +.++++. +.. +.++.+.+++......+........ ...+.++|+++.+++++..++++.+||+...........  .
T Consensus       225 ~~~dGk~-~~v-~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~--~  299 (441)
T d1qnia2         225 AVKAGNF-KTI-GDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI--E  299 (441)
T ss_dssp             HHHTTCC-BCC-TTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS--C
T ss_pred             EECCCCE-EEE-CCCCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCC--C
T ss_conf             9669999-996-9998289980368706899717988-667268999878999077599389998322445752568--8


Q ss_pred             CHHHHHH---CCCCEEEEEECCCCCEEEEECCCCCEEEEECCC----------CEEEEEE-----ECCCCCEEEEEECCC
Q ss_conf             0010010---278804999828996899971899389995899----------6169999-----654576689999379
Q 002782          486 AKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------LVSVVTF-----RGHKRGIWSVEFSPV  547 (882)
Q Consensus       486 ~~~~~~~---~~~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~i~~s~~  547 (882)
                      ......+   ..-.....+|.++|..+.+...|.+|..|++..          ......+     .||...+.+..++||
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd  379 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD  379 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             CCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             42479960145547665226578559985244316897235422133226777656864532668987752454223898


Q ss_pred             CCEEEEEE
Q ss_conf             98999951
Q 002782          548 DQVVITAS  555 (882)
Q Consensus       548 ~~~l~s~~  555 (882)
                      |++|++++
T Consensus       380 Gk~l~s~~  387 (441)
T d1qnia2         380 GKWLVVLS  387 (441)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEECC
T ss_conf             84899657

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=1.2e-13  Score=102.17  Aligned_cols=115  Identities=13%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             EEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             99996898299998898806787513787979999969998999993899399998799938998644998579999911
Q 002782           75 LFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP  154 (882)
Q Consensus        75 las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~  154 (882)
                      +++++.+|.|++|++.+++.+.++..         |+|++.. ..|..+.+..++..  +........|........++|
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~~-g~g~~~es~~vl~~--~~~~~~gd~hhP~~s~t~gtp   81 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSAT-GWGITNESKEILGG--DQQYLNGDCHHPHISMTDGRY   81 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECS---------SSBCTTT-CTTTSHHHHHHHCS--SSCCSCCCBCCCEEEEETTEE
T ss_pred             EEECCCCCCEEEEECCCCCEEEEEEE---------ECCCCCE-EEEECCCCCEEEEC--CCCCCCCCCCCCCCCEECCCC
T ss_conf             99688777489996789807999976---------7578987-99988865047831--332256755677722103268


Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCEEEEEECC-CCCCEEEEEECCCCCE
Q ss_conf             89961999995799099998898837988337-6426699999069999
Q 002782          155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITSDGST  202 (882)
Q Consensus       155 ~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~s~~~~~  202 (882)
                      ||++ ++++...++.|.++|+.++++...+.. +...+..++|+|+++.
T Consensus        82 DGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t  129 (441)
T d1qnia2          82 DGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             EEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC
T ss_pred             CCCE-EEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCE
T ss_conf             8888-99973899979999887784755795678878643487056998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-09  Score=73.10  Aligned_cols=158  Identities=15%  Similarity=0.096  Sum_probs=98.6

Q ss_pred             CEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCC---CCCEEEEEECCCCCEEEEEE---------CCCCEEEEECCC
Q ss_conf             469946998999973891999996898045653289---86399999858999899996---------898299998898
Q 002782           24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSG---------HSREIRVWDLST   91 (882)
Q Consensus        24 ~ia~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~---~~~I~~l~~spdg~~las~~---------~dg~i~iwd~~~   91 (882)
                      ...|.+|+.++....++.|.+||+.+++....+...   ...+....||||+++++...         ..+.+.++|+.+
T Consensus        21 ~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          21 EAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCC
T ss_conf             87891798489992899699998789988998727644445532138989888699998451004760335289998568


Q ss_pred             CEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf             80678751--3787979999969998999993899399998799938998644998579999911899619999957990
Q 002782           92 LKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT  169 (882)
Q Consensus        92 ~~~~~~~~--~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~  169 (882)
                      +.......  .....+....|||||+.+|... ++.|.+.+..++...+...             ++....+.-|-.|  
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~-------------~g~~~~i~nG~~d--  164 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS-------------TGKEGVIYNGLSD--  164 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC-------------CCBTTTEEEEECC--
T ss_pred             CCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEEC-------------CCCCCEEECCCCC--
T ss_conf             84564157667764311002426785699996-1329999548996589711-------------2676604436643--


Q ss_pred             EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             999988988379883376426699999069999999957
Q 002782          170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR  208 (882)
Q Consensus       170 I~iwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~  208 (882)
                         |-.+.        .-.+.-.++-|||||++|+....
T Consensus       165 ---~vyee--------e~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         165 ---WLYEE--------EILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             ---HHHHH--------TTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ---HHHHH--------HHCCCCCEEEECCCCCEEEEEEE
T ss_conf             ---10012--------30366434897798986899995

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=7.8e-09  Score=70.14  Aligned_cols=13  Identities=8%  Similarity=0.028  Sum_probs=5.1

Q ss_pred             EEEECCCCCEEEE
Q ss_conf             9998289968999
Q 002782          499 SLAVAPNDSLVCT  511 (882)
Q Consensus       499 ~i~~s~~~~~la~  511 (882)
                      .+.++|+|+++++
T Consensus       259 ~i~~spdG~~lyv  271 (365)
T d1jofa_         259 VCALTFSGKYMFA  271 (365)
T ss_dssp             EEEECTTSSEEEE
T ss_pred             CEEECCCCCEEEE
T ss_conf             1699899997899

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=9.9e-08  Score=62.81  Aligned_cols=163  Identities=16%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC---CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf             19999968980456532898639999985899989999689---829999889880678751378797999996999899
Q 002782           41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL  117 (882)
Q Consensus        41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~l  117 (882)
                      .|.|.|........... +...+...+|||||+.||.....   ..+.+.+...+.. ..+..+........|+|+|+.+
T Consensus        20 ~l~i~d~dG~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCCCCEEEEC-CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCCEE
T ss_conf             99999289997679865-898426038878999899998152675134431136750-6776420245430244889864


Q ss_pred             EEEECC-CC--EEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC--EEEEECCCCEEEEEECCCCCCEE
Q ss_conf             999389-93--99998799938998644998579999911899619999957990--99998898837988337642669
Q 002782          118 ATAGAD-RK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT--VRVWDLLAKKCVATLDKHFSRVT  192 (882)
Q Consensus       118 as~~~d-g~--i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~--I~iwd~~~~~~~~~l~~h~~~v~  192 (882)
                      +..... +.  +..+........ .............+++++.. .+++...+|.  |...++..+... .+........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEE
T ss_pred             EEEEECCCCCCEEECCCCCCCCE-EEEECCCCCCCCCCCCCCCC-CEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCC
T ss_conf             67640278641000022212200-00101442114543455443-300001268743865421331000-1000122223


Q ss_pred             EEEECCCCCEEEEEEC
Q ss_conf             9999069999999957
Q 002782          193 SMAITSDGSTLISAGR  208 (882)
Q Consensus       193 ~l~~s~~~~~l~s~~~  208 (882)
                      ...|+|++..++..+.
T Consensus       175 ~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEE
T ss_conf             4322345430577860

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=1.3e-07  Score=62.10  Aligned_cols=71  Identities=7%  Similarity=0.056  Sum_probs=29.5

Q ss_pred             EEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEEEE------ECCCCCEEEEEEEE-CCCEEEEEE-CCCEEEE
Q ss_conf             689999379989999518------980999966999224674------06767889999985-899999964-6980999
Q 002782          539 IWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTF------EGHTSSVLRASFLT-RGAQIVSCG-ADGLVKL  604 (882)
Q Consensus       539 v~~i~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~s~-~g~~l~s~~-~dg~i~i  604 (882)
                      ...+.++||+++|+++..      ...|..|++.....+...      .........+.++| +|++|+.+. .++.|.+
T Consensus       257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             CCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEE
T ss_conf             63169989999789971357875422799998568871446767667776799864789648999999999679994999


Q ss_pred             EECCC
Q ss_conf             97688
Q 002782          605 WTVRT  609 (882)
Q Consensus       605 wd~~~  609 (882)
                      |++..
T Consensus       337 ~~~~~  341 (365)
T d1jofa_         337 YRWKD  341 (365)
T ss_dssp             EEEET
T ss_pred             EEEEC
T ss_conf             99828

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.18  E-value=1.3e-07  Score=62.09  Aligned_cols=53  Identities=4%  Similarity=0.102  Sum_probs=19.8

Q ss_pred             CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC
Q ss_conf             69829999489954786540543338999981589819998308990899863
Q 002782          419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  471 (882)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~  471 (882)
                      ..+.|..|+...+.....+.......++++|.++++.++++.+.++.|...++
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf             79999999699997999997999987899992898999999878991999978

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.2e-07  Score=62.33  Aligned_cols=250  Identities=11%  Similarity=0.023  Sum_probs=0.0

Q ss_pred             EEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf             03434352355873478788478996899997388389996999502356308874248965323049978999963698
Q 002782          342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  421 (882)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  421 (882)
                      +..+...-..+.....++++.+++.-+++.....+.+..++...................++  +.+++.. +++....+
T Consensus         2 ~~~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gva--v~~~g~i-~v~d~~~~   78 (260)
T d1rwia_           2 QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLA--VDGAGTV-YVTDFNNR   78 (260)
T ss_dssp             EEECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEE--ECTTCCE-EEEETTTE
T ss_pred             CEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEE--ECCCCCE-EEEEEEEC
T ss_conf             84873155777698788999699999999718998899993899668974369866840899--9389988-98631000


Q ss_pred             EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf             29999489954786540543338999981589819998308990899863799999777543210010010278804999
Q 002782          422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  501 (882)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  501 (882)
                      .+++++..+...+........+ ..+++.+++. ++++-..+..+..++.....          ..............++
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~p-~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          79 VVTLAAGSNNQTVLPFDGLNYP-EGLAVDTQGA-VYVADRGNNRVVKLAAGSKT----------QTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EEEECTTCSCCEECCCCSCCSE-EEEEECTTCC-EEEEEGGGTEEEEECTTCSS----------CEECCCCSCCSCCEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEEC-CCCCCCCCCE-EEEECCCCCCCCCCCCCCCE----------EEEEEECCCCCCCEEE
T ss_conf             0355421120000001000000-0002455320-57503355532112322220----------1223203667752054


Q ss_pred             ECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf             82899689997189938999589961699996545766899993799899995189809999669992246740676788
Q 002782          502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  581 (882)
Q Consensus       502 ~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  581 (882)
                      ++++++++++...++.|..++...................+++.+++.++++....+.|..++.............-...
T Consensus       147 ~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P  226 (260)
T d1rwia_         147 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP  226 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCE
T ss_pred             ECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCE
T ss_conf             54899886410256433222343100122210114787631231000134321489989999699976999706998981


Q ss_pred             EEEEEEECCCEEEEEECCCEEEEEE
Q ss_conf             9999985899999964698099997
Q 002782          582 LRASFLTRGAQIVSCGADGLVKLWT  606 (882)
Q Consensus       582 ~~~~~s~~g~~l~s~~~dg~i~iwd  606 (882)
                      ..+++.++|..+++-..++.|+.++
T Consensus       227 ~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         227 LAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEE
T ss_conf             7999908999999979999899995

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-07  Score=61.36  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             EECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC---CCCEEEEEECCCCCEEEEEE
Q ss_conf             98589998999968982999988988067875137---87979999969998999993
Q 002782           67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH---DGPAIGMACHPSGGLLATAG  121 (882)
Q Consensus        67 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h---~~~V~~i~fs~~~~~las~~  121 (882)
                      .|.+++.++. -..+|.|.+||+.+++....+...   ...+....||||+++++...
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~   79 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSY   79 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred             EEECCCCEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEE
T ss_conf             8917984899-92899699998789988998727644445532138989888699998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=1.9e-07  Score=60.89  Aligned_cols=149  Identities=11%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             499982899689997189938999589961699996--545766899993799899995189809999669992246740
Q 002782          498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  575 (882)
Q Consensus       498 ~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  575 (882)
                      ..+++.+++.++++....+.+.+++.. ++.+..+.  .+......+++.++++++++....+.|++|+. +++.+.++-
T Consensus       117 ~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g  194 (279)
T d1q7fa_         117 RGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIG  194 (279)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEES
T ss_pred             CEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEC-CCCEEEEEC
T ss_conf             200001478479996326325676268-750100220010256624320120017862013551002304-794445301


Q ss_pred             --CCCCCEEEEEEEECCCEEEEEEC-CCEEEEEECCCCEEEEEECCC--CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             --67678899999858999999646-980999976888167772257--7746899992799799997289979999879
Q 002782          576 --GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMFATGGSDALVNLWHDS  650 (882)
Q Consensus       576 --~h~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~  650 (882)
                        +.......+++.++|+.+++-.. ++.|.+|+ .+|+.+.++...  ....+.+++.++|.+++ +..+..|++|+..
T Consensus       195 ~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         195 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCEEE-EECCCEEEEEEEE
T ss_conf             1321148762323147869999789980899999-9999999996888889883799908991999-9189969998722

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=2.9e-07  Score=59.67  Aligned_cols=65  Identities=22%  Similarity=0.256  Sum_probs=23.3

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             9999985899989999689829999889880678751378797999996999899999389939999
Q 002782           63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW  129 (882)
Q Consensus        63 I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~dg~i~vw  129 (882)
                      +..++++|||+++++...++.|..|+.. ++ ...+......+.+++|+++|+++++...++.+..|
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf             4787799998899996889989999089-98-89997179985368986778869983289537888

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=3.3e-07  Score=59.33  Aligned_cols=110  Identities=19%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCC--EEE
Q ss_conf             979999969998999993899399998799938998644998579999911899619999957990999988988--379
Q 002782          104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCV  181 (882)
Q Consensus       104 ~V~~i~fs~~~~~las~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~--~~~  181 (882)
                      .+..++++|||+++++...++.|..|+......  .+....+.+.+++|.++++  ++++...++.+..|+....  ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCCCEEECCCCCEEEEECCCCEEEEEECCCCEE--EEECCCCCCCEEEECCCCC--EEEEECCCCEEEEEEECCCCCCEE
T ss_conf             847877999988999968899899990899889--9971799853689867788--699832895378887101111012


Q ss_pred             EEE-CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             883-376426699999069999999957995999705
Q 002782          182 ATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  217 (882)
Q Consensus       182 ~~l-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  217 (882)
                      ... .........+.+.+++.++++...++.+..++.
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             ECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEC
T ss_conf             1023578632216677157978750356554102421

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.07  E-value=3.7e-07  Score=58.99  Aligned_cols=67  Identities=9%  Similarity=0.126  Sum_probs=25.8

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEEC
Q ss_conf             999828996899971899389995899616999965457668999937998-9999518980999966
Q 002782          499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSI  565 (882)
Q Consensus       499 ~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iwd~  565 (882)
                      .+++..+|++.++....+.|.+|+...+.....+.......++++|.|+++ ++++.+.++.|...++
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf             25783478579998279999999699997999997999987899992898999999878991999978

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=4.8e-07  Score=58.26  Aligned_cols=11  Identities=18%  Similarity=0.389  Sum_probs=4.0

Q ss_pred             EEEEEECCCEE
Q ss_conf             99998589999
Q 002782          583 RASFLTRGAQI  593 (882)
Q Consensus       583 ~~~~s~~g~~l  593 (882)
                      ...|+|||++|
T Consensus       218 ~p~~SPDG~~i  228 (269)
T d2hqsa1         218 TPSLAPNGTMV  228 (269)
T ss_dssp             EEEECTTSSEE
T ss_pred             CEEECCCCCEE
T ss_conf             55898999999

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.95  E-value=5.1e-07  Score=58.10  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             EEECCC--CCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-C-----CCEEEEECCCCEEEE
Q ss_conf             699469--98999973891999996898045653289863999998589998999968-9-----829999889880678
Q 002782           25 LVVSSD--GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-S-----REIRVWDLSTLKCLR   96 (882)
Q Consensus        25 ia~s~d--g~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~-d-----g~i~iwd~~~~~~~~   96 (882)
                      +.+|||  |+.+++...+.|.+.|+.+++... |..+...+...+|||||+.||.... +     ..|.+++..+++...
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             CCCCCCCCCCEEEEEECCCEEEEECCCCCEEE-EECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf             42588879999999909968999899998799-76699852677987899989999862898772289999825995288


Q ss_pred             EEEC------CCCCEEEEEECCCCCEEEEEE
Q ss_conf             7513------787979999969998999993
Q 002782           97 SWKG------HDGPAIGMACHPSGGLLATAG  121 (882)
Q Consensus        97 ~~~~------h~~~V~~i~fs~~~~~las~~  121 (882)
                      ....      .........|+|+++.++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             6416887547644434310279887799997

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=1.4e-06  Score=55.20  Aligned_cols=112  Identities=12%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEE
Q ss_conf             80499982899689997189938999589961699996--54576689999379989999518-9809999669992246
Q 002782          496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLK  572 (882)
Q Consensus       496 ~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~  572 (882)
                      ....+++.+++.++++....+.|++|+.. ++.+..+.  +.......+++.++++++++-.. ++.|.+|+. +++.+.
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CCCEEEECCCEEEEEEECCCCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEE
T ss_conf             66243201200178620135510023047-9444530113211487623231478699997899808999999-999999


Q ss_pred             EEECC--CCCEEEEEEEECCCEEEEEECCCEEEEEECCCC
Q ss_conf             74067--678899999858999999646980999976888
Q 002782          573 TFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  610 (882)
Q Consensus       573 ~~~~h--~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~  610 (882)
                      ++...  ......+++.++|.+ +.++.++.|++|.....
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred             EEECCCCCCCEEEEEEECCCCE-EEEECCCEEEEEEEEEE
T ss_conf             9968888898837999089919-99918996999872203

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=2.7e-06  Score=53.23  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=12.9

Q ss_pred             EEEEEECCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf             9999858999999646980999976888167772
Q 002782          583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATY  616 (882)
Q Consensus       583 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~  616 (882)
                      .+++..+|+..++....+.|.+++. .|+.+..+
T Consensus       232 Gl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             EEEECCCCCEEEEECCCCEEEEECC-CCCEEEEE
T ss_conf             6417389999999848998999979-99598899

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=5.3e-06  Score=51.34  Aligned_cols=10  Identities=20%  Similarity=0.408  Sum_probs=3.2

Q ss_pred             EEEEECCCCC
Q ss_conf             9999969998
Q 002782          106 IGMACHPSGG  115 (882)
Q Consensus       106 ~~i~fs~~~~  115 (882)
                      ..++++++|+
T Consensus        85 ~gla~~~dG~   94 (319)
T d2dg1a1          85 AAIKIHKDGR   94 (319)
T ss_dssp             EEEEECTTSC
T ss_pred             EEEEECCCCC
T ss_conf             3899999999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=3.5e-05  Score=45.89  Aligned_cols=11  Identities=45%  Similarity=0.326  Sum_probs=3.9

Q ss_pred             EEEEEECCCCC
Q ss_conf             99999858999
Q 002782           63 ITALALSPDDK   73 (882)
Q Consensus        63 I~~l~~spdg~   73 (882)
                      +.++++.++|.
T Consensus        61 ~~~i~~~~dg~   71 (295)
T d2ghsa1          61 GSALAKISDSK   71 (295)
T ss_dssp             EEEEEEEETTE
T ss_pred             CEEEEEECCCC
T ss_conf             17989965998

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.00015  Score=41.61  Aligned_cols=47  Identities=17%  Similarity=0.143  Sum_probs=18.8

Q ss_pred             EEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEE
Q ss_conf             899999858999999646980999976888167772257774689999
Q 002782          581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV  628 (882)
Q Consensus       581 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  628 (882)
                      ...+++..+|++.++.-..|.|..|+ .+|+.+..+......+++++|
T Consensus       201 pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         201 MDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEE
T ss_pred             CCCEEECCCCCEEEEEECCCCEEEEC-CCCCEEEEECCCCCCEEEEEE
T ss_conf             63267869999895320788468856-999286686389985279898

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.07  E-value=0.00022  Score=40.54  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCC-EEEEEECCCCC-EE
Q ss_conf             80999966999224674067678899999858999999646980999976888167772257774-68999927997-99
Q 002782          558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTE-MF  635 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~-~l  635 (882)
                      |.+.-||+.+++.+.... +..+...-.++..|..++.++.||.++.+|.++|+.+.+++..... -.-+.+..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEECCCC-CCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             538998078885623327-8888744146866997999789995999999998483699899995407768998999999


Q ss_pred             EEE
Q ss_conf             997
Q 002782          636 ATG  638 (882)
Q Consensus       636 ~s~  638 (882)
                      +..
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.95  E-value=0.00036  Score=39.17  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             EECCC--CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CCEEEEECCCCEE
Q ss_conf             98589--998999968982999988988067875137879799999699989999938-9-----9399998799938
Q 002782           67 ALSPD--DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-D-----RKVLVWDVDGGFC  136 (882)
Q Consensus        67 ~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~fs~~~~~las~~~-d-----g~i~vwd~~~~~~  136 (882)
                      .+|||  |+.+|..+ ++.|.+.|+.+++.. .+..+.+.+...+|||||++||.... +     ..|.+++..++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf             258887999999990-996899989999879-9766998526779878999899998628987722899998259952

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.77  E-value=0.00072  Score=37.16  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=32.5

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf             8099996699922467406767889999985899999964698099997688816777225
Q 002782          558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK  618 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  618 (882)
                      |.+.-||+.+++.+...+.. .+...-..+..+..++.++.||.++.+|..+|+.+..++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEECCCCCCEEEEECCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf             61787578778667051688-9887760798699899977999199999998868579989

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.72  E-value=0.00086  Score=36.66  Aligned_cols=60  Identities=12%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf             8099996699922467406767889999985899999964698099997688816777225
Q 002782          558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK  618 (882)
Q Consensus       558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  618 (882)
                      |.+.-||+.+++.+..+.. ..+...-.++-.+..++.++.||.++.+|..+|+.+.+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCEEEEECCC-CCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEC
T ss_conf             6468870778837310257-88887740598799899977898199999999858279989

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.71  E-value=0.00089  Score=36.57  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=11.3

Q ss_pred             EEECCCCEEEEECCCCEEEEEEE
Q ss_conf             99689829999889880678751
Q 002782           77 SSGHSREIRVWDLSTLKCLRSWK   99 (882)
Q Consensus        77 s~~~dg~i~iwd~~~~~~~~~~~   99 (882)
                      +|+.+|.|+++-+.+++.+..+.
T Consensus        18 SgG~sG~v~v~G~PSmR~l~~ip   40 (459)
T d1fwxa2          18 SSGQSGEMRILGIPSMRELMRVP   40 (459)
T ss_dssp             CCBTTCEEEEEEETTCCEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEEE
T ss_conf             07866338999548863587701

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.00097  Score=36.32  Aligned_cols=126  Identities=17%  Similarity=0.134  Sum_probs=53.7

Q ss_pred             CCEEEEEECCEEEEEECCCCCEE-----EEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEECCCCC
Q ss_conf             98999973891999996898045-----65328986399999858999899996-8982999988988067875137879
Q 002782           31 GSFIACACGESINIVDLSNASIK-----STIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGP  104 (882)
Q Consensus        31 g~~la~~~~~~I~i~d~~~~~~~-----~~l~~~~~~I~~l~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~h~~~  104 (882)
                      |.+|.++.++.|.-.++......     ..+..+...+.+++|.+..+.|..+. .++.|...++...............
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCC
T ss_conf             98999948982999978886655445310012687757999998589999999899991999976658728988701264


Q ss_pred             EEEEEECCCCCEEEEE-ECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf             7999996999899999-389939999879993899864499857999991189
Q 002782          105 AIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT  156 (882)
Q Consensus       105 V~~i~fs~~~~~las~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~  156 (882)
                      +..++++.-+..|..+ ...+.|.+.++........+.........+++.|..
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~  133 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             CCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCC
T ss_conf             20799963688688842678979988058816777712566687279992566

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=0.0014  Score=35.25  Aligned_cols=164  Identities=14%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             CCEEECCCCCEEEEEE--C--CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf             7469946998999973--8--91999996898045653289863999998589998999968982999988988067875
Q 002782           23 GPLVVSSDGSFIACAC--G--ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW   98 (882)
Q Consensus        23 ~~ia~s~dg~~la~~~--~--~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~   98 (882)
                      +.+.+.+|. ++.+-.  +  ..|.|.|+.++....+-.-..   -+.-.+|..+.||.-+ ...+.++|+++.+.+..+
T Consensus        25 ~~~T~ESDk-yicVRe~~~~~~~VvIidl~n~~~~~Rrpi~A---dsAIMhP~~~IiALra-g~~LQiFnletK~klks~   99 (327)
T d1utca2          25 STLTMESDK-FICIREKVGEQAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH   99 (327)
T ss_dssp             TTEECSSSS-EEEEEEEETTEEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEECCC-EEEEEECCCCCCEEEEEECCCCCCCEECCCCH---HHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEE
T ss_conf             438785587-79998325898439999889987633144361---6653088875799962-886899844682211158


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-EEEEEEECCC----CCEEEEEEECCCCCCEEEEE------ECC
Q ss_conf             137879799999699989999938993999987999-3899864499----85799999118996199999------579
Q 002782           99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHK----GVVSSILFHPDTDKSLLFSG------SDD  167 (882)
Q Consensus        99 ~~h~~~V~~i~fs~~~~~las~~~dg~i~vwd~~~~-~~~~~~~~h~----~~v~~i~f~~~~~~~~l~sg------~~d  167 (882)
                      .-. .+|.--.|-.+. .|+..+ +..|.-|++++. .+...+..|.    ..|..-..+++.+ +++++|      ...
T Consensus       100 ~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~i~  175 (327)
T d1utca2         100 TMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVV  175 (327)
T ss_dssp             ECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEE
T ss_pred             ECC-CCCEEEEECCCC-EEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCC-EEEEEEEECCCCCEE
T ss_conf             768-885799944798-899991-8816997356999852662321012486389989899998-899995713788305


Q ss_pred             CCEEEEECCCCEEEEEECCCCCCEEEEEE
Q ss_conf             90999988988379883376426699999
Q 002782          168 ATVRVWDLLAKKCVATLDKHFSRVTSMAI  196 (882)
Q Consensus       168 g~I~iwd~~~~~~~~~l~~h~~~v~~l~~  196 (882)
                      |.+.+|+.+. +.-+.+.+|.+....+.+
T Consensus       176 G~mQLYS~er-~~sQ~ieGhaa~F~~~~~  203 (327)
T d1utca2         176 GAMQLYSVDR-KVSQPIEGHAASFAQFKM  203 (327)
T ss_dssp             EEEEEEETTT-TEEEEECCSEEEEEEECC
T ss_pred             EEEEEEEECC-CCCCCCCCEEEEEEEEEC
T ss_conf             8888998022-867523203465688870

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.51  E-value=0.0017  Score=34.72  Aligned_cols=136  Identities=11%  Similarity=0.017  Sum_probs=72.3

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
Q ss_conf             99982899689997189938999589961699996545766899993799899995189809999669992246740676
Q 002782          499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT  578 (882)
Q Consensus       499 ~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  578 (882)
                      ..+++|+..++.+...+.............    .+.......+...+... .......|.+.-+|+.+++.+.+... .
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~G~l~AiD~~TG~~~W~~~~-~  463 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPYR----AGQFFVGATLAMYPGPN-GPTKKEMGQIRAFDLTTGKAKWTKWE-K  463 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCC----TTSCCCCEEEEEEECTT-STTSCCCEEEEEECTTTCCEEEEEEE-S
T ss_pred             CCEECCCCCEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCEEECCCCC-CCCCCCCCCEEEECCCCCCEEEECCC-C
T ss_conf             520778886289765534433430024566----77532156303314667-76667756178853677846427678-9


Q ss_pred             CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCC-EEEEEECCCCC-EEEEEEC
Q ss_conf             78899999858999999646980999976888167772257774-68999927997-9999728
Q 002782          579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTE-MFATGGS  640 (882)
Q Consensus       579 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~-~l~s~~~  640 (882)
                      .+..+-..+..+..++.++.||.++.+|.++|+.+.+++..... -.-+.+..||+ |+++...
T Consensus       464 ~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         464 FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEEEC
T ss_conf             9987560596699799977899699999999868789989999651564898899999999906

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.50  E-value=0.0017  Score=34.62  Aligned_cols=82  Identities=18%  Similarity=0.071  Sum_probs=52.6

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CEEEEEEEECCCE-
Q ss_conf             99389995899616999965457668999937998999951898099996699922467406767-8899999858999-
Q 002782          515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQ-  592 (882)
Q Consensus       515 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~g~~-  592 (882)
                      .|.+.-+|+.+++..-..... .+..+-..+..+.++++++.|+.++.+|.++|+.+.++.-... .-.-+.|..||++ 
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEE
T ss_conf             561788536778464276789-9987560596699799977899699999999868789989999651564898899999


Q ss_pred             EEEEE
Q ss_conf             99964
Q 002782          593 IVSCG  597 (882)
Q Consensus       593 l~s~~  597 (882)
                      +++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99990

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.49  E-value=0.0018  Score=34.53  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=52.8

Q ss_pred             CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEEEECCCE-E
Q ss_conf             938999589961699996545766899993799899995189809999669992246740676788-99999858999-9
Q 002782          516 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV-LRASFLTRGAQ-I  593 (882)
Q Consensus       516 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~~~~s~~g~~-l  593 (882)
                      |.+.-||+.+++.+-...... +...-..+..+.++++++.|+.++.+|..+|+.+.++....... .-+.|..+|++ +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             617875787786670516889-8877607986998999779991999999988685799898994516779998999999


Q ss_pred             EEE
Q ss_conf             996
Q 002782          594 VSC  596 (882)
Q Consensus       594 ~s~  596 (882)
                      +..
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=0.002  Score=34.21  Aligned_cols=198  Identities=10%  Similarity=0.046  Sum_probs=77.0

Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             30499789999636982999948995478654054333899998158981999830899089986379999977754321
Q 002782          406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  485 (882)
Q Consensus       406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  485 (882)
                      +...++.++.+-..++.|+..++...............+..+++..-+..+..+-...+.|.+.++....          
T Consensus        43 ~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~----------  112 (263)
T d1npea_          43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----------  112 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------
T ss_pred             EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCE----------
T ss_conf             9858999999989999199997665872898870126420799963688688842678979988058816----------


Q ss_pred             CHHHHHHCCCCEEEEEECCCCCEEEEECCC-CC--EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCCEE
Q ss_conf             001001027880499982899689997189-93--8999589961699996545766899993799899995-1898099
Q 002782          486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIK  561 (882)
Q Consensus       486 ~~~~~~~~~~~i~~i~~s~~~~~la~~s~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~~i~  561 (882)
                      ...........+..+++.|...++...... +.  |.-.++............-....++++.+.++.|+.+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEE
T ss_conf             77771256668727999256692799534899768999667899723655303555530799504758999928999999


Q ss_pred             EEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEE-CCCEEEEEECCCCEEEEEE
Q ss_conf             996699922467406767889999985899999964-6980999976888167772
Q 002782          562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATY  616 (882)
Q Consensus       562 iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~  616 (882)
                      ..++........+.+.. ....+++.  +.+|.... ..+.|...+..+++.+..+
T Consensus       193 ~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEECCCC-CCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf             99999997699988999-86899999--9999999999997999989899510698

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.002  Score=34.17  Aligned_cols=185  Identities=12%  Similarity=0.054  Sum_probs=101.0

Q ss_pred             EEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCE----EEEEEECCCCCEEE
Q ss_conf             99997389199999689804565328986399999858999899996-89829999889880----67875137879799
Q 002782           33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLK----CLRSWKGHDGPAIG  107 (882)
Q Consensus        33 ~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spdg~~las~~-~dg~i~iwd~~~~~----~~~~~~~h~~~V~~  107 (882)
                      +|.++.+..|+-.++.+......+. ....+.+++|++..+.|.... ..+.|...++....    ...........+..
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCEEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCE
T ss_conf             9999787718999899985266417-998559999980899999999979979999935788876148998489998546


Q ss_pred             EEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf             99969998999993-89939999879993899864499857999991189961999995799099998898837988337
Q 002782          108 MACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK  186 (882)
Q Consensus       108 i~fs~~~~~las~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~i~f~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~l~~  186 (882)
                      +++++.+..|.... ..+.|.+.++.+................++..|.....+..-.+..+.|...++...........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCC
T ss_conf             89864265289995489999857648953788872799883369998003948871269973026863688834412004


Q ss_pred             CCCCEEEEEECCCCCEEEEEE-CCCEEEEEECC
Q ss_conf             642669999906999999995-79959997058
Q 002782          187 HFSRVTSMAITSDGSTLISAG-RDKVVNLWDLR  218 (882)
Q Consensus       187 h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~  218 (882)
                      ......++++.+.+..|+.+. ..+.|...++.
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf             532016998613356999952896799999899

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.0043  Score=31.99  Aligned_cols=82  Identities=11%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             CCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE-EEEEECCCCC-
Q ss_conf             89809999669992246740676788999998589999996469809999768881677722577746-8999927997-
Q 002782          556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-  633 (882)
Q Consensus       556 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~-  633 (882)
                      ..|.+.-+|+.+++.+..+..+ .++..-..+..+..++.++.||.++.+|..+|+.+.+++...... .-+.+..+|+ 
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCEEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf             8775999807899587326779-997450169769869996799969999999986867988999962167799989999


Q ss_pred             EEEEE
Q ss_conf             99997
Q 002782          634 MFATG  638 (882)
Q Consensus       634 ~l~s~  638 (882)
                      |++..
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99999

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0044  Score=31.98  Aligned_cols=28  Identities=7%  Similarity=-0.014  Sum_probs=10.2

Q ss_pred             EEEEEECCCCCEEEEE-ECCCCEEEEECC
Q ss_conf             6899993799899995-189809999669
Q 002782          539 IWSVEFSPVDQVVITA-SGDKTIKIWSIS  566 (882)
Q Consensus       539 v~~i~~s~~~~~l~s~-~~d~~i~iwd~~  566 (882)
                      ...+++.+.+..|+.+ ...+.|...++.
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf             16998613356999952896799999899

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.07  E-value=0.0051  Score=31.54  Aligned_cols=82  Identities=12%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC-EEEEEEEECCC-E
Q ss_conf             993899958996169999654576689999379989999518980999966999224674067678-89999985899-9
Q 002782          515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGA-Q  592 (882)
Q Consensus       515 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~-~  592 (882)
                      .|.+.-+|+.+++..-.... ..+..+-.++-.+.++++++.|+.++.+|..+|+.+.++...... -.-+.+..+|+ |
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf             66468870778837310257-88887740598799899977898199999999858279989999551677999899999


Q ss_pred             EEEEE
Q ss_conf             99964
Q 002782          593 IVSCG  597 (882)
Q Consensus       593 l~s~~  597 (882)
                      ++...
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99991

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.86  E-value=0.0076  Score=30.38  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CEEEEEEEECCCE-E
Q ss_conf             9389995899616999965457668999937998999951898099996699922467406767-8899999858999-9
Q 002782          516 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQ-I  593 (882)
Q Consensus       516 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~g~~-l  593 (882)
                      |.+.-||+.+++..-... +..+..+-.++..+.+++.|+.|+.++.+|..+|+.+.++..... .-.-+.|..+|++ +
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEECCCC-CCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             538998078885623327-8888744146866997999789995999999998483699899995407768998999999


Q ss_pred             EEE
Q ss_conf             996
Q 002782          594 VSC  596 (882)
Q Consensus       594 ~s~  596 (882)
                      +..
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.63  E-value=0.011  Score=29.27  Aligned_cols=53  Identities=13%  Similarity=0.122  Sum_probs=18.9

Q ss_pred             CCCEEEEEE-CCCCEEEEECCCCEEEEEEEC-CCCCEEEEEEECCCCCCEEEEEE
Q ss_conf             998999993-899399998799938998644-99857999991189961999995
Q 002782          113 SGGLLATAG-ADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGS  165 (882)
Q Consensus       113 ~~~~las~~-~dg~i~vwd~~~~~~~~~~~~-h~~~v~~i~f~~~~~~~~l~sg~  165 (882)
                      ||+||.+.. .+..|.+-|+...++.....- ....+..++..++.+..+++..+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~  152 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNG  152 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCC
T ss_conf             5128999758986389998854056679966788777501202579747997367

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.61  E-value=0.011  Score=29.22  Aligned_cols=14  Identities=14%  Similarity=0.449  Sum_probs=5.5

Q ss_pred             EEEEEECCCCCEEE
Q ss_conf             69999906999999
Q 002782          191 VTSMAITSDGSTLI  204 (882)
Q Consensus       191 v~~l~~s~~~~~l~  204 (882)
                      +..+..+.++++++
T Consensus       235 ~~~~~~s~d~~~l~  248 (430)
T d1qfma1         235 MGGAELSDDGRYVL  248 (430)
T ss_dssp             EEEEEECTTSCEEE
T ss_pred             EEEEECCCCCCEEE
T ss_conf             77530268762456

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.40  E-value=0.015  Score=28.37  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC-EEEEEEEECCCE
Q ss_conf             8993899958996169999654576689999379989999518980999966999224674067678-899999858999
Q 002782          514 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQ  592 (882)
Q Consensus       514 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~  592 (882)
                      ..|.+.-+|+.+++..-....+ .++..-..+..+.++++++.|+.++.+|..+|+.+.++.-.... -.-+.|..+|++
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCEEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf             8775999807899587326779-997450169769869996799969999999986867988999962167799989999


Q ss_pred             -EEEE
Q ss_conf             -9996
Q 002782          593 -IVSC  596 (882)
Q Consensus       593 -l~s~  596 (882)
                       ++..
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99999

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.025  Score=26.93  Aligned_cols=66  Identities=8%  Similarity=0.016  Sum_probs=31.1

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf             880499982899689997189938999589961699996545766899993799899995189809
Q 002782          495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI  560 (882)
Q Consensus       495 ~~i~~i~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i  560 (882)
                      +-..++.+|+.-..+..-+.-|.+.+||+.++.++..-+-...+|...+-..+..-++....+|.|
T Consensus       256 DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         256 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEE
T ss_conf             847799964337999999667589999756662899940478844896267888608998789769

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.01  E-value=0.089  Score=23.28  Aligned_cols=27  Identities=11%  Similarity=0.441  Sum_probs=10.3

Q ss_pred             EEECCCCCEEEEEECC-CCEEEEECCCC
Q ss_conf             9985899989999689-82999988988
Q 002782           66 LALSPDDKLLFSSGHS-REIRVWDLSTL   92 (882)
Q Consensus        66 l~~spdg~~las~~~d-g~i~iwd~~~~   92 (882)
                      .++.+++++++.|+.+ ..+.+||..+.
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEEECCCCEEEEECCCCCCEEEECCCCC
T ss_conf             9994688689863688862167567557

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.15  E-value=0.21  Score=20.79  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=12.1

Q ss_pred             CEEECCCCCEEEEEECCEEEEEE
Q ss_conf             46994699899997389199999
Q 002782           24 PLVVSSDGSFIACACGESINIVD   46 (882)
Q Consensus        24 ~ia~s~dg~~la~~~~~~I~i~d   46 (882)
                      -+|+++...++++++.+.+.|..
T Consensus        41 LLAVsn~~GLl~aa~~~~l~V~~   63 (381)
T d1xipa_          41 NLDISNSKSLFVAASGSKAVVGE   63 (381)
T ss_dssp             CEEEETTTTEEEEEETTEEEEEE
T ss_pred             EEEEECCCCEEEEECCCEEEEEE
T ss_conf             68995777889998899779999

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.71  E-value=0.23  Score=20.52  Aligned_cols=11  Identities=0%  Similarity=0.093  Sum_probs=4.4

Q ss_pred             EEEEECCCCEE
Q ss_conf             99994899547
Q 002782          423 VRLWDSESRCC  433 (882)
Q Consensus       423 i~iwd~~~~~~  433 (882)
                      ++++|+.+++.
T Consensus       153 l~v~Dl~tg~~  163 (430)
T d1qfma1         153 IKFMKVDGAKE  163 (430)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEECCCCCEE
T ss_conf             67741676403

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.11  E-value=0.31  Score=19.70  Aligned_cols=29  Identities=24%  Similarity=0.517  Sum_probs=13.0

Q ss_pred             EEEECCCCCEEEEEECC-CCEEEEECCCCE
Q ss_conf             99996999899999389-939999879993
Q 002782          107 GMACHPSGGLLATAGAD-RKVLVWDVDGGF  135 (882)
Q Consensus       107 ~i~fs~~~~~las~~~d-g~i~vwd~~~~~  135 (882)
                      ..++.+++.+++.|+.+ ..+.+||..+..
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             EEEEECCCCEEEEECCCCCCEEEECCCCCC
T ss_conf             899946886898636888621675675574

>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Arp2/3 complex 16 kDa subunit ARPC5
family: Arp2/3 complex 16 kDa subunit ARPC5
domain: Arp2/3 complex 16 kDa subunit ARPC5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.85  E-value=0.74  Score=17.15  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             CCHHHHHHHCCCHHHHHHHHHHCCCCH------------HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             115778662004398998785517933------------68999999983101388999998406988899999999987
Q 002782          669 GQELENAVLDADYTKAIQVAFELRRPH------------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREW  736 (882)
Q Consensus       669 ~~~~~~~~~~~~~~~a~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~  736 (882)
                      ++++..++...+..+|++.++...-.+            .+++++.++     ...+|+.++..|+.++.-.|++|+-.-
T Consensus        31 e~eVrslL~~G~~~~AL~~~L~~pP~~~~~~~~Kd~~~~~vl~VL~si-----K~~dI~~~v~~L~~~~~D~LMKYiYkG  105 (143)
T d1k8kg_          31 EGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF-----KANDIEKAVQSLDKNGVDLLMKYIYKG  105 (143)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS-----CGGGHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             999999996687899999982289989983889999999999999970-----088899999963867678999999873


Q ss_pred             HCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf             2398--434899999999861399
Q 002782          737 NTKP--KLCHVAQFVLFQLFNIHP  758 (882)
Q Consensus       737 ~~~~--~~~~~~~~~l~~~l~~~~  758 (882)
                      +..+  ..+.++..|-..++...|
T Consensus       106 ~~~p~~~s~~~LL~WHEKl~~~~G  129 (143)
T d1k8kg_         106 FESPSDNSSAVLLQWHEKALAAGG  129 (143)
T ss_dssp             HTSCCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             158887510699999999998659