Citrus Sinensis ID: 002783

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
cccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEccccEEEEEEEccEEcEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccccccccccEEEEEEEEEEccccEEEEEccEEEcccccccccccccccccccccEEEEEEEEEccccEEEcccccccEEEcccccccEEEEEEccccccHHEEEEEEEcccEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccEEHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHccccccccEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHccccc
cccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEccEEEEEEEEEcccccEEEEccccHHHcccccccEEEEEccHHHHHHHHcccccccccccccccEcccccccccccccccEEEEcccccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccHHHHccccccccccccEEEEEEEEcccEEEEEcccEEEEEEccccccEEEEEEEccccccHEEEEEEEcccEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHcccEEEEEEEccccccHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEccccEEEEEcccccccEEEEEccccccEEEEEccccHHHHHHHHHHcccccccHHHHHHHcccHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHc
makprkpkneetkvensgavVRHQKLCLSIDmekhqiygyteleiavpdigivglhaenlgiesvlvdgeptefeyyphnhqnvenekrwrsmvsspssaADAAAAVYISALERElvpnllincckpfkglTDQIEQMNlenkldssaepkqnvKLVRIDYWVEKVEVGihfdgnalhtdnqirrarcwfpciddttqrccydlefTVSQNLIAVSAGSLLYQvlskddpprktyvyrldvpvsaKWITLavapfevlpdhhqslmshiclpanvskIHNTVEFFHNAFSHYEtyldakfpfgsykqvflapemavssstfgAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFgvyitpelpndewllDGLAGFLTDSFIKKFLGNNEARYRRYKAncavckaddsgatalsssasckdlygtqcigifgkirSCKSVAILQMLEKQMGSNFFRKILQNIISRaqgaspvrtlsTKEFRHFANKvgnlerpflkeffprwvgtcgcpvlrmgfsynkrKNIVELAVLRdctvkpdsrtpvlssntdsenrdgdigwpgmmSIRVHeldgmydhpilpmagdAWQLLEIQCHSKLAARralkpkkgskpdgcddngdavagldmrssmesplswiradpeMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKsrrfdeniglprpndfrdfsEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKyndnngnpysDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFdrlmpsyngilTISCIRTLTQIALKLSGFISLGFQYYMASSS
makprkpkneetkvensgavvrHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLEnkldssaepkqnvKLVRIDYWVEKVEVGIHfdgnalhtdnqiRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVlrdctvkpdsrtpvlssntdsenrdgdigwpGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRalkpkkgskpdgcddnGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALAntaseetdwAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRsmvsspssaadaaaavyisaLERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSklaarralkpkkGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVaqaqaiaalealPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
******************AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPH***********************AAAAVYISALERELVPNLLINCCKPFKGLTDQI*****************NVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV*********************IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLA************************************SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYM****
*******************VVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTD***************EPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQ*LSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSG************LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRAL*P*KGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASS*
****************SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEK****************AAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPD**************RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAAR*************CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
***************NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
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MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYMASSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query881 2.2.26 [Sep-21-2011]
Q32PW3 1191 Transcription initiation yes no 0.891 0.659 0.282 4e-83
Q6P1X5 1199 Transcription initiation yes no 0.887 0.652 0.279 2e-82
Q5ZIT8 1168 Transcription initiation yes no 0.878 0.662 0.274 4e-82
Q8C176 1104 Transcription initiation yes no 0.886 0.707 0.281 2e-81
Q24325 1221 Transcription initiation yes no 0.879 0.634 0.276 2e-80
P87121 1172 Transcription initiation yes no 0.901 0.677 0.244 2e-63
P23255 1407 Transcription initiation yes no 0.578 0.362 0.274 5e-48
Q97VF1784 Probable aminopeptidase 1 yes no 0.380 0.427 0.209 1e-10
P95928785 Leucyl aminopeptidase OS= no no 0.370 0.415 0.224 3e-10
Q07075957 Glutamyl aminopeptidase O no no 0.382 0.352 0.222 4e-10
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 251/890 (28%), Positives = 424/890 (47%), Gaps = 105/890 (11%)

Query: 21  VRHQKLCLS-IDMEKHQIYGYTELEI--AVPDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
           + HQ +C++ ++ ++  + GY EL I   V ++  + L+++   I  V V+     F Y 
Sbjct: 17  LTHQVVCINNVNFQRKSVIGYVELTIFPTVVNLNRIKLNSKQCRIYRVRVNDLEAPFIYN 76

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALEREL---VPNLLINCCKPFKGLTDQ 134
               +   +E + R++    S+   A +AV   A   EL   VP+ L       +G   +
Sbjct: 77  DPTLEVCHHESKQRNLNYFSSAYTAAVSAVDPDAGNGELSIKVPSELWK-----QGDEMK 131

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCID 194
           + ++ +E  LD   +PK  +  V  D      E   H         NQ   +R WFPC+D
Sbjct: 132 VMKVYIEFSLD---QPKGGLHFVVPDVEGNMAERAAH----VFSFGNQ-NSSRFWFPCVD 183

Query: 195 DTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254
             ++ C + LEFTV  +++AVS G L+  V + D   +KTY Y L +P +A  I++AV P
Sbjct: 184 SYSELCTWKLEFTVDASMVAVSCGDLVETVYTHDMR-KKTYHYMLPIPTAAPNISMAVGP 242

Query: 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314
           FE+L D +   ++H CLP  +  + +T+ + H  F  YE  L  ++P+  +K VF+  E 
Sbjct: 243 FEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYSCFKTVFVD-EA 301

Query: 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLD 374
            V  S++ A+M IFS+ +L+   +IDQ   T   L+ ALA+Q+FG +I+     DEW+L 
Sbjct: 302 YVQVSSY-ASMSIFSTNLLHSGLIIDQTPMTRSFLAQALAQQFFGCFISRMSWADEWVLK 360

Query: 375 GLAGFLTDSFIKKFLGNNEARY---------RRYKANCAVC---------KADDSGATAL 416
           G++G++   ++KK  G NE R+           Y+               K  D+    L
Sbjct: 361 GISGYIYGLYLKKTFGVNEYRHWIKEELDKIVEYELKIGGVLLHPTFSGGKEKDNPTPHL 420

Query: 417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR 476
             S         +    + K+  CK+  +++++E ++   F  ++   ++S A  AS  +
Sbjct: 421 HFSIKHPHTLSWE----YYKMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQK 476

Query: 477 ---------TLSTKEF-RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNI 526
                     +ST  F +  +N  G    P +K+    WV   G       F++N+++N+
Sbjct: 477 YQSHMWSQMLVSTSGFLKSISNVSGKDIGPLIKQ----WVDQSGVVKFFGSFAFNRKRNV 532

Query: 527 VELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGD 586
           +EL + +D T                    G   + G + + V ELDG ++H  L +  +
Sbjct: 533 LELEIRQDYT------------------SSGTQKYVGPIKVTVQELDGSFNH-TLQIEEN 573

Query: 587 AWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-SMESPLSWIRADPEM 645
           + +  +I CHSK    +  K            NG+ V  +D+ +   +SPL WIR DP+M
Sbjct: 574 SLK-HDIPCHSKSRRNKKKKIPLM--------NGEEV-DMDLSAMDADSPLLWIRIDPDM 623

Query: 646 EYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFW 705
             L ++ F Q   MW  QL  + DVVAQ +AI ALE  P  +      L + L   + F+
Sbjct: 624 SILRKVEFEQADFMWQYQLRYERDVVAQEEAILALEKFP--TPPSRRALTDILEQDQCFY 681

Query: 706 RVRIEAAYALANTA-SEETDWAGLLHLVKFYKSRRF--DENIGLPRPNDFRDFSEYFVLE 762
           +VR+ A + LA  A S  + W G   +   + +R F       + + N+F  F  YF+ +
Sbjct: 682 KVRMHACFCLAKIANSMVSTWTGPPAMKSLF-TRMFCCKSCPNIVKTNNFISFQSYFLQK 740

Query: 763 AIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV--------- 813
            IP A+A +R   N  PRE + F+L L+KYNDN  N +SD ++ A L+ ++         
Sbjct: 741 TIPVAMAQLRDVQNLCPREVLSFILDLIKYNDNRKNKFSDNYYRAELIDALTNSLTPAIS 800

Query: 814 --GELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 861
              E+         +  +L+ I R L  ++L+PSY   +T+SC+R +  +
Sbjct: 801 INNEVRTVDSLNADVRLILEEITRFLNMEKLLPSYRNTITVSCLRAIRML 850
Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.
Danio rerio (taxid: 7955)
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 Back     alignment and function description
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 Back     alignment and function description
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 Back     alignment and function description
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q97VF1|APE1_SULSO Probable aminopeptidase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape1 PE=3 SV=1 Back     alignment and function description
>sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1 Back     alignment and function description
>sp|Q07075|AMPE_HUMAN Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query881
225455842 1345 PREDICTED: transcription initiation fact 0.985 0.645 0.824 0.0
225455844 1325 PREDICTED: transcription initiation fact 0.985 0.655 0.824 0.0
224132980 1359 predicted protein [Populus trichocarpa] 0.981 0.636 0.808 0.0
356513902 1388 PREDICTED: transcription initiation fact 0.993 0.630 0.794 0.0
356563105 1388 PREDICTED: transcription initiation fact 0.990 0.628 0.797 0.0
356563107 1368 PREDICTED: transcription initiation fact 0.990 0.638 0.797 0.0
449516818 1362 PREDICTED: transcription initiation fact 0.975 0.630 0.744 0.0
449439379 1362 PREDICTED: transcription initiation fact 0.975 0.630 0.744 0.0
297842145 1390 membrane alanyl aminopeptidase [Arabidop 0.986 0.625 0.721 0.0
22330618 1390 TBP-associated factor 2 [Arabidopsis tha 0.986 0.625 0.720 0.0
>gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1494 bits (3869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/875 (82%), Positives = 786/875 (89%), Gaps = 7/875 (0%)

Query: 1   MAKPRKPKNEE-TKVENSG--AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHA 57
           MAKPRKPK ++ TK ENS   AVVRHQKLCLSID++K +IYGYTELEIAVPDIGIVGLHA
Sbjct: 1   MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHA 60

Query: 58  ENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELV 117
           ENL IESV VDGEPTEFE+YPH HQ+ E+EKRW S++S+ SSAAD A+++Y+SALEREL 
Sbjct: 61  ENLVIESVSVDGEPTEFEFYPH-HQHTESEKRWSSVLSA-SSAADVASSMYVSALERELD 118

Query: 118 PNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNAL 177
           PNLLI CCKP K  ++Q  Q +LEN L SS EPKQNVKLVR+DYWVE+ E GIHF+ N L
Sbjct: 119 PNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVL 178

Query: 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVY 237
           HTDNQIRRARCWFPC+DDT+Q CCYDLEFTV+ NL+AVS GSLLYQVLSKDDPPRKTYVY
Sbjct: 179 HTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVY 238

Query: 238 RLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLD 297
           +L+VPV+A+WI LAVAPFEVLPD H  L+S++CLPAN+ K+ NTV FFH+AFSHYE YL 
Sbjct: 239 KLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLS 298

Query: 298 AKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357
           A FPFGSYKQVF+APEMA+SS T GA+M IFSSQIL+DEKVIDQ IDT IKL++ALARQW
Sbjct: 299 ASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQW 358

Query: 358 FGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALS 417
           FGV+I+PE PNDEWLLDGLAGFLTDSF+K+FLGNNEARYRRYKANCAVCKADDSGATALS
Sbjct: 359 FGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALS 418

Query: 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PVR 476
           SSASCKDLYGTQCIG++GKIRS KSVAILQMLEKQMG   FRKILQ I+ RAQ  +  +R
Sbjct: 419 SSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLR 478

Query: 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536
           TLSTKEFRHFANKVGNLERPFLKEFFPRWVG+CGCPVLR G SYNKRKN+VELAVLR CT
Sbjct: 479 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCT 538

Query: 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH 596
             PD+ T VL+ N DSENR+ DIGWPGMMSIRVHELDGMYDHPILPMAG+ WQLLEIQCH
Sbjct: 539 AAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCH 598

Query: 597 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP 656
           SKLAARR  KPKKGSKPDG DDNGD V  +DMRS+ ESPL W+R DPE+EYLAEIHFNQP
Sbjct: 599 SKLAARRFQKPKKGSKPDGSDDNGD-VPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQP 657

Query: 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716
            QMWINQLE+D DVVAQAQAIA LEALP LSF+VVN LNNFLSDSKAFWRVRIEAA+ALA
Sbjct: 658 AQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALA 717

Query: 717 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776
           NTASEETDWAGLLHLVKFYKSRRFD NIGLP+PNDF DF EYFVLEAIPHA+AMVRAAD 
Sbjct: 718 NTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADK 777

Query: 777 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 836
           KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL
Sbjct: 778 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 837

Query: 837 LQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL 871
           LQFDRLMPSYNGILTISCIRTLTQI LKLSGFI L
Sbjct: 838 LQFDRLMPSYNGILTISCIRTLTQIGLKLSGFIPL 872

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22330618|ref|NP_177536.2| TBP-associated factor 2 [Arabidopsis thaliana] gi|20856938|gb|AAM26691.1| At1g73960/F2P9_17 [Arabidopsis thaliana] gi|332197409|gb|AEE35530.1| TBP-associated factor 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query881
TAIR|locus:2031571 1390 TAF2 "TBP-associated factor 2" 0.985 0.624 0.685 0.0
DICTYBASE|DDB_G0292724 2044 taf2 "TFIID subunit" [Dictyost 0.320 0.137 0.353 2.5e-97
ZFIN|ZDB-GENE-030131-3207 1191 taf2 "TAF2 RNA polymerase II, 0.409 0.303 0.299 4.7e-70
UNIPROTKB|F6UTN8 1206 TAF2 "Uncharacterized protein" 0.409 0.299 0.283 3.8e-68
UNIPROTKB|E2QT19 1202 TAF2 "Uncharacterized protein" 0.407 0.298 0.284 8.1e-68
UNIPROTKB|Q6P1X5 1199 TAF2 "Transcription initiation 0.409 0.301 0.281 1.1e-67
MGI|MGI:2443028 1104 Taf2 "TAF2 RNA polymerase II, 0.406 0.324 0.283 3.8e-67
UNIPROTKB|Q5ZIT8 1168 TAF2 "Transcription initiation 0.409 0.309 0.283 3.8e-67
UNIPROTKB|F1MME0 1202 TAF2 "Uncharacterized protein" 0.409 0.300 0.283 1.4e-66
UNIPROTKB|F1LNY6 1200 Taf2 "Protein Taf2" [Rattus no 0.406 0.298 0.280 2.9e-66
TAIR|locus:2031571 TAF2 "TBP-associated factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3168 (1120.3 bits), Expect = 0., P = 0.
 Identities = 600/875 (68%), Positives = 694/875 (79%)

Query:     1 MAKPRKPKNEET---KV-ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLH 56
             MAK RKPKNEE    K  EN+GA V HQKL LSID +K QIYGYTELE++VPDIGIVGLH
Sbjct:     1 MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60

Query:    57 AENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRXXXXXXXXXXXXXXXXXXXXLEREL 116
             AENLGIESVLVDGEPT FEYYPH HQN E E  W                     L+RE 
Sbjct:    61 AENLGIESVLVDGEPTVFEYYPH-HQNSETESNWNSVSDPASAADAAAMEYVGV-LKRED 118

Query:   117 VPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNA 176
               NLLINCCKP K L++Q++ + LEN   SS E KQNVKL+RI+YWVEK+E GIHFDGN 
Sbjct:   119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178

Query:   177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
             +HTDNQ+RRARCWFPCIDD   RC +DLEFTV  N +AVS G LLYQV+ K+D  +KTYV
Sbjct:   179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238

Query:   237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
             Y L +P++ +W++L   P E+LPD    L+S++CLP ++S++ NT+EFFH A+S+YE YL
Sbjct:   239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298

Query:   297 DAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQ 356
              A FPFG YKQVFL PEM V+SST GA++ IFSS ILYDE+VIDQ IDT IKL+ ALA+Q
Sbjct:   299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358

Query:   357 WFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATAL 416
             WFGVYITPE PND+WLLDGLAGFLTD FIK+FLGNNEARYRRYKANCAVCKADDSGA  L
Sbjct:   359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418

Query:   417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PV 475
             SSS SC+DL+GT  IG+ GKIRS KS A+LQMLEKQMGS+ FRKILQ IISRA+  S  +
Sbjct:   419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478

Query:   476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535
             R+LSTKEFR FANK+GNLERPFLKEFF RWV + GCPVLR+G SYNKRKN VE+A LR+C
Sbjct:   479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538

Query:   536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQC 595
             T   D+R  V+ + +DSE+RD D GWPG+MSIRV+ELDGM DHP LPMAGD WQLLE+ C
Sbjct:   539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPC 598

Query:   596 HSXXXXXXXXXXXXGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQ 655
             HS            G KPDG +DN DA+A L+ ++S+ESPL+WI+ADPEMEY+AEIH +Q
Sbjct:   599 HSKLAAKRYQKPKKGGKPDGAEDNVDAIAPLENKTSIESPLAWIKADPEMEYIAEIHLHQ 658

Query:   656 PVQMWINQLEKDGDVVXXXXXXXXXXXXPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYAL 715
             P+QMW+NQLEKDGDVV               SF++VN L N L+DSK FWR+RI AA+AL
Sbjct:   659 PLQMWVNQLEKDGDVVAQAQAIASLEALKQHSFSIVNALKNVLTDSKVFWRIRIAAAFAL 718

Query:   716 ANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD 775
             A TASEE+DWAGL HL+KFYKSRRFD  IGLP+PNDFRDF EYFVLEAIPHA+A+VR A+
Sbjct:   719 AKTASEESDWAGLQHLIKFYKSRRFDAEIGLPKPNDFRDFPEYFVLEAIPHAIAIVRGAE 778

Query:   776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDR 835
              KSPREAVEF+LQLLKYNDN+GN YSDVFWLA LVQSVG+LEF QQS+ FL+ LLKRIDR
Sbjct:   779 GKSPREAVEFILQLLKYNDNSGNSYSDVFWLAVLVQSVGDLEFCQQSLTFLAPLLKRIDR 838

Query:   836 LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS 870
             LLQFDRLMPSYNGILTISCIRTL Q ALKLS  IS
Sbjct:   839 LLQFDRLMPSYNGILTISCIRTLAQTALKLSDSIS 873
GO:0005634 "nucleus" evidence=ISM
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0292724 taf2 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIT8 TAF2 "Transcription initiation factor TFIID subunit 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNY6 Taf2 "Protein Taf2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query881
cd09839507 cd09839, M1_TAF2, TATA binding protein (TBP) assoc 0.0
cd09595407 cd09595, M1, Peptidase M1 family contains aminopep 2e-22
cd09603415 cd09603, M1_APN_4, Peptidase M1 family Aminopeptid 4e-21
COG0308859 COG0308, PepN, Aminopeptidase N [Amino acid transp 2e-13
cd09602438 cd09602, M1_APN_3, Peptidase M1 family containing 1e-09
pfam01433390 pfam01433, Peptidase_M1, Peptidase family M1 3e-07
pfam1364688 pfam13646, HEAT_2, HEAT repeats 2e-04
TIGR02412831 TIGR02412, pepN_strep_liv, aminopeptidase N, Strep 4e-04
cd09604435 cd09604, M1_APN_5, Peptidase M1 family containing 0.001
cd09599442 cd09599, M1_LTA4H, Peptidase M1 family contains le 0.003
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 Back     alignment and domain information 
 Score =  578 bits (1491), Expect = 0.0
 Identities = 199/533 (37%), Positives = 286/533 (53%), Gaps = 54/533 (10%)

Query: 20  VVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
            V HQK+ +SID  +  I GYTEL I     ++  + L+A+   I SV V+GEP +F Y 
Sbjct: 1   KVLHQKVEISIDFFRRSIIGYTELTILPLSKNLRQIRLNAKQCRILSVEVNGEPAKFTYN 60

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQ 137
               Q +  ++ W+S++     A+DA+ +             LLI+  K  +        
Sbjct: 61  DP-TQELCRDEPWKSVLQH---ASDASLSAVSYVDLDANNGELLISVPKEVR-------- 108

Query: 138 MNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG--------NALHTDNQI-RRARC 188
                        +Q V  VRID+ VE+ + G+HF G          + T N I   ARC
Sbjct: 109 ---------KLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARC 159

Query: 189 WFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248
           WFPC+DD +Q C ++LEFTV  N++AVS+G LL QV   +D  +KTY Y L VP +A+ I
Sbjct: 160 WFPCVDDPSQLCTWELEFTVPANMVAVSSGDLLEQVYDTEDMRKKTYHYALTVPTAAQNI 219

Query: 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308
            LAV PFE+L D H   ++H CLP  + ++ NT  + H AF  +E YL  +FPF SYKQV
Sbjct: 220 GLAVGPFEILVDPHAHEITHFCLPGLLPELKNTTSYLHEAFEFFEEYLSCRFPFSSYKQV 279

Query: 309 FLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPN 368
           F+  E A   +++ A++ IFSS +LY E +IDQ  DT  KL++ALA QWFG +I+PE  +
Sbjct: 280 FV-DEAAEDVTSY-ASLSIFSSNLLYPEDIIDQTYDTRRKLAYALASQWFGCFISPEAWS 337

Query: 369 DEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKD---- 424
           DEWLL G+AG++T  F+KK  GNNE R+R  K    VC+ D      L            
Sbjct: 338 DEWLLKGIAGYITGLFVKKLFGNNEYRFRIKKELDRVCEYDIKRPGILLDPIILPGKLPL 397

Query: 425 ----LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS------- 473
                +   C  ++G+  + K+  +L+MLE+++G   F ++L  I+SRA  AS       
Sbjct: 398 NPDPKHPHTCSPLYGEFMALKAHLVLRMLERRIGKESFLQVLNKILSRALQASQQKTQSG 457

Query: 474 --PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524
                 LST+ F     KV       LK FF +WV   GCP  R+ F +N+++
Sbjct: 458 DWSQMLLSTESFFKTCEKV---SGKELKVFFQQWVYGSGCPKFRVSFRFNRKR 507

This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N Back     alignment and domain information
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 881
KOG1932 1180 consensus TATA binding protein associated factor [ 100.0
KOG1046882 consensus Puromycin-sensitive aminopeptidase and r 100.0
PRK14015875 pepN aminopeptidase N; Provisional 100.0
TIGR02412831 pepN_strep_liv aminopeptidase N, Streptomyces livi 100.0
TIGR02414863 pepN_proteo aminopeptidase N, Escherichia coli typ 100.0
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 100.0
COG0308859 PepN Aminopeptidase N [Amino acid transport and me 100.0
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 100.0
KOG1047613 consensus Bifunctional leukotriene A4 hydrolase/am 100.0
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 98.88
COG3975558 Predicted protease with the C-terminal PDZ domain 98.52
PF11838324 ERAP1_C: ERAP1-like C-terminal domain; InterPro: I 96.67
PRK09687280 putative lyase; Provisional 96.43
PRK09687280 putative lyase; Provisional 95.47
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.58
PF10460366 Peptidase_M30: Peptidase M30; InterPro: IPR019501 94.52
PF07607128 DUF1570: Protein of unknown function (DUF1570); In 94.43
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 94.15
PF05299122 Peptidase_M61: M61 glycyl aminopeptidase; InterPro 93.64
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 91.92
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 90.18
TIGR02270 410 conserved hypothetical protein. Members are found 86.54
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 85.79
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 85.29
COG1413335 FOG: HEAT repeat [Energy production and conversion 85.23
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-147  Score=1263.78  Aligned_cols=824  Identities=38%  Similarity=0.633  Sum_probs=666.7

Q ss_pred             CCCCCCCCC----cCCCCCCCCcEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcCeEEEeccCceeeEEEEcCeeee
Q 002783            1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE   73 (881)
Q Consensus         1 ~~~~~~~~~----~~p~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~   73 (881)
                      |++.|+.++    ++..+.+++..++||.|+|+ ||+.++++.|.++|+|.+  ++++.|.|||++|+|.+|.|+|..+.
T Consensus         3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~   82 (1180)
T KOG1932|consen    3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK   82 (1180)
T ss_pred             cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence            556666554    23344666677999999999 999999999999999984  68999999999999999999999999


Q ss_pred             eeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCC
Q 002783           74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN  153 (881)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~  153 (881)
                      |.|.++....+.. ..|.. +..+..........|.. + ..+.++|.|.++++....  +.+               ..
T Consensus        83 f~y~d~~q~~~~~-~~~~~-~l~~~s~~~~~~~~y~~-l-~~~~g~L~I~ipk~~~~~--~ee---------------~~  141 (1180)
T KOG1932|consen   83 FIYNDPTQNDCTD-EIWQR-VLDPASQSHFLAVQYED-L-DEDNGELLIKIPKESKKV--GEE---------------LK  141 (1180)
T ss_pred             eeecchhhhhhhh-hhhhh-hhhhhhhhhhHHHhhhc-c-ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence            9999885444422 22221 10010111111112221 1 223678999876542111  110               01


Q ss_pred             ceEEEEEEEEecCCcceeeeec---------eEeccCcc--CCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 002783          154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY  222 (881)
Q Consensus       154 ~~~~~i~y~~~~~~~G~~f~~~---------~~~T~~ep--~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~  222 (881)
                      ...++|+|.+++|..|++|++.         +++|.+.+  .+||+||||+|+++.+|||+|++++|++++++++|++.+
T Consensus       142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~  221 (1180)
T KOG1932|consen  142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE  221 (1180)
T ss_pred             ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence            2347799999999999999754         34555433  368999999999999999999999999999999999999


Q ss_pred             eeeccCCCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 002783          223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF  302 (881)
Q Consensus       223 ~~~~~~~~~~~~~~f~~t~p~s~y~iafaVG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~  302 (881)
                      ++.++ |..+++++|+.+.|+++..||||||+|+.+..+.+.++++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus       222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF  300 (1180)
T KOG1932|consen  222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF  300 (1180)
T ss_pred             eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence            99886 78899999999999999999999999999988888999999999999999999999999999999999988999


Q ss_pred             CCccEEEECCCCcccccccccchhhcccccccCcccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 002783          303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD  382 (881)
Q Consensus       303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~  382 (881)
                      +.|++||||..+..  ....++|.++++++||+.+++|+.+.++..+|..||.||||+++||..|+|.||.+|+|.||..
T Consensus       301 ~~~k~VFvd~~~~~--i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~  378 (1180)
T KOG1932|consen  301 SCYKTVFVDEAAVE--ISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG  378 (1180)
T ss_pred             ceeeEEEecCCcce--eeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence            99999999964322  2334479999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCchHhHHHHHhhcchhhcccC-CCcccCCCCccccCCCCccccccccchhhhHHHHHHHHHHhh----ChHH
Q 002783          383 SFIKKFLGNNEARYRRYKANCAVCKADDS-GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF  457 (881)
Q Consensus       383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~l----G~e~  457 (881)
                      +|+++++|+|||||+.++.+++++..|.+ ++..+..     +++++.   .|    -.|+++.+|.+.+++    |.-.
T Consensus       379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~  446 (1180)
T KOG1932|consen  379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG  446 (1180)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence            99999999999999999999999988873 4444331     111110   01    234555555554443    2223


Q ss_pred             HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecc
Q 002783          458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT  536 (881)
Q Consensus       458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~  536 (881)
                      ....+++++...+.++ .+...+.+.|+++++.++.   ..++.||++|+++.|+|++.+.+.||++++.|++.+.|.+.
T Consensus       447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~  523 (1180)
T KOG1932|consen  447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR  523 (1180)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence            3344444444444433 1112344555555555542   12689999999999999999999999999999999999665


Q ss_pred             CCCCCCCcccc------CCCCCC----CCCCCCccceeEEEEEeccCCcccccccccCCCcceEEEEeeccchhhhhhcC
Q 002783          537 VKPDSRTPVLS------SNTDSE----NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK  606 (881)
Q Consensus       537 ~~~~~~~~~~~------~~~~~~----~~~~~~~~~~pltvri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~~  606 (881)
                      +...+.....+      ...+.+    ...+...|+||||||+||.||+|+|++ +| ++.|+++|||||+|   +|.+|
T Consensus       524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k  598 (1180)
T KOG1932|consen  524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK  598 (1180)
T ss_pred             hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence            44332222111      001111    112225699999999999999999986 34 56699999999999   45577


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHcCCCC
Q 002783          607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL  686 (881)
Q Consensus       607 ~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~~WIr~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~~~~~  686 (881)
                      +||.+..+|||++.| ++.+|    .++|++|||+|||+||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus       599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~  673 (1180)
T KOG1932|consen  599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST  673 (1180)
T ss_pred             CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence            888888899998877 66664    3799999999999999999999999999999999999999999999999998866


Q ss_pred             chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 002783          687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH  766 (881)
Q Consensus       687 ~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~  766 (881)
                        ..+++|+|+|.|++||||||++||.||+++++++.+|.|++||+++|++.||+.+++|||||||+||++|||||+||.
T Consensus       674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~  751 (1180)
T KOG1932|consen  674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV  751 (1180)
T ss_pred             --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence              457999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccH-------------HHHHHHHHHH
Q 002783          767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI-------------LFLSSLLKRI  833 (881)
Q Consensus       767 a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~~~~~~~-------------~~~~~~~~~i  833 (881)
                      |+|.+|+.+|.||.+|++||||||+|||||+|+|||+||||+||+||++..++..+.             .+...+++||
T Consensus       752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei  831 (1180)
T KOG1932|consen  752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI  831 (1180)
T ss_pred             HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999976654322             2344599999


Q ss_pred             HHHHhccccccCCCchhHHHHHHHHHHHHHhhcCcccchhhhhc
Q 002783          834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYM  877 (881)
Q Consensus       834 ~r~~~~d~~~psy~~~vt~~~l~~~~~~~~~~~~~~~~~~~~~~  877 (881)
                      +|+|+||+++|||.++|+++||+++.++  +..|++|+++..+.
T Consensus       832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l--~k~~hl~s~p~~~~  873 (1180)
T KOG1932|consen  832 TRLLNMEKLMPSFKHIIKVSALKAIREL--QKSGHLPSLPELLE  873 (1180)
T ss_pred             HHHHHHHhhchhhhceEEeeechhhhhh--hhccccccCchhhh
Confidence            9999999999999999999999999886  57999999986554

>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query881
3cia_A605 Crystal Structure Of Cold-Aminopeptidase From Colwe 6e-07
4e36_A967 Crystal Structure Of The Human Endoplasmic Reticulu 6e-06
3se6_A967 Crystal Structure Of The Human Endoplasmic Reticulu 8e-06
3mdj_A921 Er Aminopeptidase, Erap1, Bound To The Zinc Aminope 1e-05
4fyq_A903 Human Aminopeptidase N (Cd13) Length = 903 4e-05
3qnf_A954 Crystal Structure Of The Open State Of Human Endopl 5e-05
2yd0_A897 Crystal Structure Of The Soluble Domain Of Human En 5e-05
3q7j_A780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 8e-05
4fke_A909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-04
4f5c_A959 Crystal Structure Of The Spike Receptor Binding Dom 2e-04
4h5h_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
4hol_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
1z1w_A780 Crystal Structures Of The Tricorn Interacting Facor 2e-04
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 102/292 (34%), Gaps = 37/292 (12%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKT-- 234
           L + NQ   AR W P  D  + R  Y    T  ++L+A         V+S ++ P     
Sbjct: 141 LFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLA---------VMSANNEPGTERD 191
Query: 235 --YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFS 290
             Y + +   +    I + V   E     HQ+        L A V++  +T      A  
Sbjct: 192 GDYFFSMPQAIPPYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQ 251
Query: 291 HYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLS 350
            Y      K+ +G Y  + L P              I  + +  D+ +++        ++
Sbjct: 252 MY-----GKYRWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGDKSLVNL-------IA 299
Query: 351 FALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD 410
             LA  W G  +T E   D WL +G   ++ +  ++   G + A   +         A D
Sbjct: 300 HELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQ------ALGAQD 353
Query: 411 SGATALSSSASCKDLY----GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFF 458
             A  L   AS   LY    G      F  +   K    L  LE++ G   F
Sbjct: 354 LNAEILELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERF 405
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 Back     alignment and structure
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 Back     alignment and structure
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 Back     alignment and structure
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 Back     alignment and structure
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query881
3b7s_A616 Leukotriene A-4 hydrolase; transition state, analo 2e-21
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 4e-15
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 1e-04
3b34_A891 Aminopeptidase N; protease, hydrolase, thermolysin 4e-14
2gtq_A867 Aminopeptidase N; alanine aminopeptidase, M1 famil 6e-13
3ebh_A889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 1e-09
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 1e-05
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 1e-05
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 3e-05
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
 Score = 98.3 bits (245), Expect = 2e-21
 Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 38/419 (9%)

Query: 143 KLDSSAEPKQNVKLVRIDYWVEKVEVGIHF------DGNA---LHTDNQIRRARCWFPCI 193
            L  +    Q +  + I +        + +       G     L +  Q    R   PC 
Sbjct: 95  SLPIALSKNQEIV-IEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQ 153

Query: 194 DDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253
           D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+    I L V 
Sbjct: 154 DTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213

Query: 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE 313
             E      ++          V K         +     E  L   + +G Y  + L P 
Sbjct: 214 ALESRQIGPRT--LVWSEKEQVEKSAYEFSETESMLKIAE-DLGGPYVWGQYDLLVLPPS 270

Query: 314 MAVSSSTFGAAMG----IF--SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELP 367
                  +G  M      F   + +  D+ +     +        ++  W G  +T +  
Sbjct: 271 FP-----YG-GMENPCLTFVTPTLLAGDKSL----SNVIAHQ---ISHSWTGNLVTNKTW 317

Query: 368 NDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYG 427
           +  WL +G   +L      +  G     +        +  +  +       +    DL  
Sbjct: 318 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377

Query: 428 TQCIGIFGKIRSCKSVAILQMLEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFR-H 485
                 +  +   K  A+L  LE+ + G   F   L+  + +    S    ++T +++  
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDF 433

Query: 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544
             +   +      +  +  W+ + G P ++  +        + L+       + D  + 
Sbjct: 434 LYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSF 492
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 881
d3b7sa2208 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term 3e-14
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 1e-12
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Back     information, alignment and structure

class: All beta proteins
fold: Leukotriene A4 hydrolase N-terminal domain
superfamily: Leukotriene A4 hydrolase N-terminal domain
family: Leukotriene A4 hydrolase N-terminal domain
domain: Leukotriene A4 hydrolase N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 65/247 (26%)

Query: 17  SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEF 74
           S    +H  L  S+D  +  + G   L +     ++  + L  ++L IE V+++G+  ++
Sbjct: 14  SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKY 73

Query: 75  EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ 134
                  Q+ +      S+  +                                      
Sbjct: 74  ALGE--RQSYKGSPMEISLPIAL------------------------------------- 94

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRR 185
                           K    ++ I +        + +         +   L +  Q   
Sbjct: 95  ---------------SKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH 139

Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
            R   PC D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+  
Sbjct: 140 CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199

Query: 246 KWITLAV 252
             I L V
Sbjct: 200 YLIALVV 206
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query881
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 100.0
d3b7sa2208 Leukotriene A4 hydrolase N-terminal domain {Human 100.0
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 91.93
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=333.48  Aligned_cols=237  Identities=14%  Similarity=0.222  Sum_probs=186.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-CCCCCCCCCCCHHHCCCCCCCCCCCCHH
Q ss_conf             870799994884247989999999999999987079889997009997898-7443211123033301244557422102
Q 002783          263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE-MAVSSSTFGAAMGIFSSQILYDEKVIDQ  341 (881)
Q Consensus       263 ~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~-~~~~~~~~gagl~~~~~~lL~~~~~~d~  341 (881)
                      ++.|++|++|+..+.++++++.+++++++||++|| ||||+||++|++|++ ..++|+++  |++++++.++..+..   
T Consensus         7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~--~l~~~~~~~~~~~~~---   80 (252)
T d3b7sa3           7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLAGDKS---   80 (252)
T ss_dssp             ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCCSSST---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHCCEEEECCCCCCCCCCCC--EEEEECCHHCCCCCH---
T ss_conf             88369997534688999999999999999999679-998332688996788655340132--046310000146510---


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCC--CCCCCCCCC
Q ss_conf             346699999999985514432699999268999999999999999970870576788875001101035--798545788
Q 002783          342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD--SGATALSSS  419 (881)
Q Consensus       342 ~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGlA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~--~~~~~l~~~  419 (881)
                         ...++|||+|||||||+||++||+|+||+||||+|++.+++++.+|.+..++.............+  ....++...
T Consensus        81 ---~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
T d3b7sa3          81 ---LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKL  157 (252)
T ss_dssp             ---TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSS
T ss_pred             ---HHHHHHHHHHHHHHHHHCEECCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             ---99999999999998612200121414764218899998764002320222223331246677787642113775323


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             86556788753444442001008999999999647-48999999999987118999877897899999999469996578
Q 002783          420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFL  498 (881)
Q Consensus       420 ~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~iG-~e~F~~~L~~~l~~~~~~~~~~~~st~~f~~~~e~~~~~~~~~l  498 (881)
                      .  ......+....|+.+.|.||++||+||+..|| ++.|+++|+.|++++++++    +++.||.+.+++++   +.++
T Consensus       158 ~--~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~----~~~~df~~~l~~~~---~~~~  228 (252)
T d3b7sa3         158 V--VDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYF---KDKV  228 (252)
T ss_dssp             S--CCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHT---GGGH
T ss_pred             E--CCCCCCCHHHCCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHH---CCCC
T ss_conf             2--0344433554255225302458999999986438999999999999828799----99999999999985---4042


Q ss_pred             HHH----HHHHHCCCCCCEEEEE
Q ss_conf             758----9753049992189999
Q 002783          499 KEF----FPRWVGTCGCPVLRMG  517 (881)
Q Consensus       499 ~~f----~~~Wv~~~G~P~l~v~  517 (881)
                      +.+    |++|++++|+|+|+|+
T Consensus       229 ~~~~~~~f~~W~~~~G~P~l~v~  251 (252)
T d3b7sa3         229 DVLNQVDWNAWLYSPGLPPIKPN  251 (252)
T ss_dssp             HHHTTSCHHHHHHCCSSCSSCCC
T ss_pred             CHHHHHHHHHHHCCCCCCEEECC
T ss_conf             34667599998668998725425
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure