Citrus Sinensis ID: 002803
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 879 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LL84 | 1219 | DNA ligase 4 OS=Arabidops | yes | no | 0.949 | 0.684 | 0.782 | 0.0 | |
| Q7X7E9 | 1322 | Putative DNA ligase 4 OS= | yes | no | 0.861 | 0.572 | 0.582 | 0.0 | |
| Q5R6L3 | 911 | DNA ligase 4 OS=Pongo abe | yes | no | 0.907 | 0.875 | 0.329 | 1e-121 | |
| P49917 | 911 | DNA ligase 4 OS=Homo sapi | yes | no | 0.907 | 0.875 | 0.328 | 1e-120 | |
| Q90YB1 | 912 | DNA ligase 4 OS=Gallus ga | yes | no | 0.905 | 0.872 | 0.334 | 1e-118 | |
| Q8BTF7 | 911 | DNA ligase 4 OS=Mus muscu | yes | no | 0.906 | 0.874 | 0.329 | 1e-117 | |
| Q54CR9 | 1088 | DNA ligase 4 OS=Dictyoste | yes | no | 0.846 | 0.683 | 0.317 | 1e-112 | |
| Q6C8A3 | 956 | DNA ligase 4 OS=Yarrowia | yes | no | 0.835 | 0.767 | 0.315 | 2e-95 | |
| Q2U6A1 | 1006 | DNA ligase 4 OS=Aspergill | yes | no | 0.838 | 0.732 | 0.300 | 9e-95 | |
| A8N936 | 1025 | DNA ligase 4 OS=Coprinops | N/A | no | 0.794 | 0.680 | 0.322 | 2e-88 |
| >sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1372 bits (3550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/840 (78%), Positives = 751/840 (89%), Gaps = 5/840 (0%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGG---AAPNAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +QLCY AFDVLYVGDTSVIHQSLKERH
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKERH 361
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEGI
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
VLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLIIGGYYGSGRRGGEVAQFLVALA+R
Sbjct: 421 VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR 480
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
+ YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKERP
Sbjct: 481 AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP 540
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV
Sbjct: 541 DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV 600
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M
Sbjct: 601 NSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNM 659
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHY 720
+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G+KY+AAKR+ DVIH+
Sbjct: 660 IFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF 719
Query: 721 SWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 780
SWVLDCCS+ K+L L PKY+LHL+D+S+ KLQ+++DEFSD Y+WDLDL +KQ+LSN +
Sbjct: 720 SWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQ 779
Query: 781 SEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHG 840
SED K+IDYYKKK CP+ +WSC CC+YFY ++ LS + E LLG+ +RL LE+ G
Sbjct: 780 SEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMAG 839
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Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1 |
| >sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q54CR9|DNLI4_DICDI DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LIG4 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2U6A1|DNLI4_ASPOR DNA ligase 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=lig4 PE=3 SV=1 | Back alignment and function description |
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| >sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 879 | ||||||
| 224144326 | 1242 | predicted protein [Populus trichocarpa] | 0.973 | 0.689 | 0.801 | 0.0 | |
| 112732548 | 1319 | DNA ligase IV [Populus nigra] | 0.972 | 0.648 | 0.797 | 0.0 | |
| 225445943 | 1162 | PREDICTED: DNA ligase 4-like [Vitis vini | 0.949 | 0.718 | 0.810 | 0.0 | |
| 297735473 | 1163 | unnamed protein product [Vitis vinifera] | 0.949 | 0.717 | 0.808 | 0.0 | |
| 356556242 | 1171 | PREDICTED: DNA ligase 4-like [Glycine ma | 0.972 | 0.730 | 0.776 | 0.0 | |
| 30696835 | 1219 | DNA ligase 4 [Arabidopsis thaliana] gi|7 | 0.949 | 0.684 | 0.782 | 0.0 | |
| 297796605 | 1221 | ATLIG4 [Arabidopsis lyrata subsp. lyrata | 0.949 | 0.683 | 0.779 | 0.0 | |
| 357449599 | 1244 | DNA ligase [Medicago truncatula] gi|3554 | 0.971 | 0.686 | 0.729 | 0.0 | |
| 449463583 | 1214 | PREDICTED: DNA ligase 4-like [Cucumis sa | 0.948 | 0.686 | 0.773 | 0.0 | |
| 8843818 | 1184 | unnamed protein product [Arabidopsis tha | 0.912 | 0.677 | 0.746 | 0.0 |
| >gi|224144326|ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1424 bits (3685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/861 (80%), Positives = 768/861 (89%), Gaps = 5/861 (0%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
T T+ +LVSLFNWI KTK +++KRSKFRKF+DT+C DYFSA+RLILP+LDRERG+Y
Sbjct: 10 TAHTKFSILVSLFNWISKTKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILPNLDRERGTY 69
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGA---APNAGNFPMVAAEVLQRRQGMI 120
GLKESVLA LI+ALGMS+DS DA++LINWRKGGA NAGNF +VAAEVLQRRQG +
Sbjct: 70 GLKESVLAVSLIEALGMSRDSPDALKLINWRKGGANATGANAGNFSLVAAEVLQRRQGTV 129
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTI+ELN LLD+LASSENR EK +VL+ LI KTN QEMKWIIMIILKDLKLG+SEKS
Sbjct: 130 SGGLTIEELNGLLDKLASSENRGEKTAVLAALINKTNTQEMKWIIMIILKDLKLGMSEKS 189
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
+FHEFHPDAEDLFNVTCDLKLVCEKL+DRNQRHKRQDIEVGKAVRPQLAMR+ DAHAAW+
Sbjct: 190 VFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVSDAHAAWK 249
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGKEVV+ECKFDGDRIQIHKNG+E+HYFSR+FLDHSEY H MS II QNVL +RCILD
Sbjct: 250 KLHGKEVVVECKFDGDRIQIHKNGAEVHYFSRNFLDHSEYAHGMSDIIVQNVLDERCILD 309
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAARDGL SDRQLCY AFD+LYVGDTSVIHQ+LKERH
Sbjct: 310 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH 369
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN+H P GEP SL+A+NVD++EKFFKETIENRDEGI
Sbjct: 370 ELLRKVVKPVKGRLEILVPNGGLNAHRLP-GEPYCSLIAYNVDDIEKFFKETIENRDEGI 428
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
VLKDLGSKWEP DRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFL+ LAER
Sbjct: 429 VLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLLGLAER 488
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
PA +TYPRRFISFCRVG GLSDEELD VV+KLKPYFRK EYPK +PPSFYQVTNNSKERP
Sbjct: 489 PASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPPSFYQVTNNSKERP 548
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWIE+P+KSIILSITSDIRTI SEVFSAPYSLRFPRIDRVRYDKPWH+CLDVQSFVELV
Sbjct: 549 DVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV 608
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
HSSNGTTQKGK YG +QD KP +SSRKGEKK+VS+VPSH +QTD+SDIKGET IFS+M
Sbjct: 609 HSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETLIFSNM 668
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHY 720
+FYFVNVPP+ SL+SLHKMV ENGGTFSMNLNNSVTHC+AA++KG+KY+AAK GD+IHY
Sbjct: 669 MFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAKLHGDIIHY 728
Query: 721 SWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 780
SWVLDCC QKKLL LQPK +L LSD SKKKL EE+DEFSD Y+WDLDL+DIKQLLSN++
Sbjct: 729 SWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIKQLLSNINA 788
Query: 781 SEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHG 840
SED K ID K+KYCP++KWS FHGCC+YF+ S E L+PDWE LLGLA RRLKLEI F G
Sbjct: 789 SEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRLKLEI-FMG 847
Query: 841 VSLPERNIFYGTRSCMLLDPS 861
NI + T +L+ P+
Sbjct: 848 GGKVSNNIAHATHLVVLIVPA 868
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|112732548|dbj|BAF03051.1| DNA ligase IV [Populus nigra] | Back alignment and taxonomy information |
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| >gi|225445943|ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297735473|emb|CBI17913.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356556242|ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30696835|ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA ligase 4; AltName: Full=DNA ligase IV; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 4 gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA ligase 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297796605|ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi|297312022|gb|EFH42446.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357449599|ref|XP_003595076.1| DNA ligase [Medicago truncatula] gi|355484124|gb|AES65327.1| DNA ligase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449463583|ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|8843818|dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 879 | ||||||
| TAIR|locus:2175544 | 1219 | ATLIG4 [Arabidopsis thaliana ( | 0.929 | 0.670 | 0.770 | 0.0 | |
| DICTYBASE|DDB_G0292760 | 1088 | lig4 "BRCT domain-containing p | 0.616 | 0.498 | 0.290 | 2.3e-98 | |
| UNIPROTKB|Q5R6L3 | 911 | DNL4 "DNA ligase 4" [Pongo abe | 0.838 | 0.809 | 0.320 | 7.6e-96 | |
| UNIPROTKB|P49917 | 911 | LIG4 "DNA ligase 4" [Homo sapi | 0.838 | 0.809 | 0.318 | 1.2e-95 | |
| UNIPROTKB|E2R0G7 | 911 | LIG4 "DNA ligase" [Canis lupus | 0.898 | 0.867 | 0.309 | 2.7e-93 | |
| UNIPROTKB|F1MB07 | 911 | LIG4 "DNA ligase" [Bos taurus | 0.831 | 0.802 | 0.314 | 1.3e-91 | |
| RGD|1304639 | 911 | Lig4 "ligase IV, DNA, ATP-depe | 0.841 | 0.812 | 0.305 | 5.1e-90 | |
| UNIPROTKB|Q23RI5 | 1026 | TTHERM_00387050 "DNA ligase" [ | 0.739 | 0.633 | 0.300 | 3e-88 | |
| UNIPROTKB|F1RLP1 | 910 | LIG4 "DNA ligase" [Sus scrofa | 0.673 | 0.650 | 0.343 | 4.3e-86 | |
| UNIPROTKB|Q90YB1 | 912 | LIG4 "DNA ligase 4" [Gallus ga | 0.558 | 0.538 | 0.361 | 9e-77 |
| TAIR|locus:2175544 ATLIG4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3365 (1189.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 633/822 (77%), Positives = 722/822 (87%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAP---NAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +QLCY AFDVLYVGDTSVIHQSLKERH
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKERH 361
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEGI
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAER 480
VLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLII EVAQFLVALA+R
Sbjct: 421 VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR 480
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
+ YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKERP
Sbjct: 481 AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP 540
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV
Sbjct: 541 DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV 600
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M
Sbjct: 601 NSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNM 659
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHY 720
+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G+KY+AAKR+ DVIH+
Sbjct: 660 IFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF 719
Query: 721 SWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 780
SWVLDCCS Y+LHL+D+S+ KLQ+++DEFSD Y+WDLDL +KQ+LSN +
Sbjct: 720 SWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQ 779
Query: 781 SEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWE 822
SED K+IDYYKKK CP+ +WSC CC+YFY ++ LS + E
Sbjct: 780 SEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEE 821
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| DICTYBASE|DDB_G0292760 lig4 "BRCT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5R6L3 DNL4 "DNA ligase 4" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P49917 LIG4 "DNA ligase 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R0G7 LIG4 "DNA ligase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MB07 LIG4 "DNA ligase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1304639 Lig4 "ligase IV, DNA, ATP-dependent" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q23RI5 TTHERM_00387050 "DNA ligase" [Tetrahymena thermophila SB210 (taxid:312017)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RLP1 LIG4 "DNA ligase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q90YB1 LIG4 "DNA ligase 4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q90YB1 | DNLI4_CHICK | 6, ., 5, ., 1, ., 1 | 0.3348 | 0.9055 | 0.8728 | yes | no |
| Q8BTF7 | DNLI4_MOUSE | 6, ., 5, ., 1, ., 1 | 0.3291 | 0.9067 | 0.8748 | yes | no |
| P49917 | DNLI4_HUMAN | 6, ., 5, ., 1, ., 1 | 0.3283 | 0.9078 | 0.8759 | yes | no |
| Q5R6L3 | DNLI4_PONAB | 6, ., 5, ., 1, ., 1 | 0.3294 | 0.9078 | 0.8759 | yes | no |
| Q9LL84 | DNLI4_ARATH | 6, ., 5, ., 1, ., 1 | 0.7821 | 0.9499 | 0.6849 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.5.1.1 | 0.946 |
| 3rd Layer | 6.5.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.XVIII.461.1 | hypothetical protein (1231 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.IV.3685.1 | • | 0.508 | ||||||||
 | fgenesh4_pg.C_LG_V000509 | • | 0.508 | ||||||||
 | eugene3.24040001 | • | 0.508 | ||||||||
 | eugene3.00002235 | • | 0.508 | ||||||||
 | estExt_Genewise1_v1.C_LG_XIV0718 | • | 0.508 | ||||||||
 | estExt_Genewise1_v1.C_LG_VIII1820 | • | 0.508 | ||||||||
 | DNG901 | • | 0.502 | ||||||||
 | DNG904 | • | 0.502 | ||||||||
 | DNG903 | • | 0.502 | ||||||||
 | DNG902 | • | 0.502 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 879 | |||
| TIGR00574 | 514 | TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 | 1e-103 | |
| cd07903 | 225 | cd07903, Adenylation_DNA_ligase_IV, Adenylation do | 2e-80 | |
| PRK01109 | 590 | PRK01109, PRK01109, ATP-dependent DNA ligase; Prov | 6e-62 | |
| cd07968 | 140 | cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/ol | 2e-54 | |
| COG1793 | 444 | COG1793, CDC9, ATP-dependent DNA ligase [DNA repli | 2e-52 | |
| pfam01068 | 195 | pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas | 2e-40 | |
| cd07901 | 207 | cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla | 3e-39 | |
| cd07898 | 201 | cd07898, Adenylation_DNA_ligase, Adenylation domai | 4e-36 | |
| cd07900 | 219 | cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation | 5e-36 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 5e-33 | |
| PRK03180 | 508 | PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | 4e-32 | |
| PLN03113 | 744 | PLN03113, PLN03113, DNA ligase 1; Provisional | 2e-31 | |
| cd07906 | 190 | cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla | 3e-28 | |
| cd07902 | 213 | cd07902, Adenylation_DNA_ligase_III, Adenylation d | 2e-26 | |
| cd07893 | 129 | cd07893, OBF_DNA_ligase, The Oligonucleotide/oligo | 8e-26 | |
| TIGR02779 | 298 | TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l | 2e-24 | |
| PRK09632 | 764 | PRK09632, PRK09632, ATP-dependent DNA ligase; Revi | 6e-20 | |
| cd08039 | 235 | cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio | 4e-19 | |
| cd07969 | 144 | cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oli | 5e-19 | |
| TIGR02776 | 552 | TIGR02776, NHEJ_ligase_prk, DNA ligase D | 3e-15 | |
| PRK05972 | 860 | PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | 2e-14 | |
| cd07972 | 122 | cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleo | 8e-14 | |
| pfam04679 | 95 | pfam04679, DNA_ligase_A_C, ATP dependent DNA ligas | 1e-13 | |
| cd07967 | 139 | cd07967, OBF_DNA_ligase_III, The Oligonucleotide/o | 1e-13 | |
| cd07905 | 194 | cd07905, Adenylation_DNA_ligase_LigC, Adenylation | 6e-12 | |
| cd06846 | 182 | cd06846, Adenylation_DNA_ligase_like, Adenylation | 1e-11 | |
| PRK07636 | 275 | PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | 4e-11 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 7e-11 | |
| PHA02587 | 488 | PHA02587, 30, DNA ligase; Provisional | 1e-10 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 2e-10 | |
| PRK09633 | 610 | PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | 4e-10 | |
| TIGR04120 | 526 | TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent | 1e-09 | |
| pfam12738 | 63 | pfam12738, PTCB-BRCT, twin BRCT domain | 2e-09 | |
| cd07897 | 207 | cd07897, Adenylation_DNA_ligase_Bac1, Adenylation | 6e-09 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 9e-09 | |
| PRK09125 | 282 | PRK09125, PRK09125, DNA ligase; Provisional | 9e-09 | |
| PRK09247 | 539 | PRK09247, PRK09247, ATP-dependent DNA ligase; Vali | 4e-08 | |
| cd07896 | 174 | cd07896, Adenylation_kDNA_ligase_like, Adenylation | 1e-07 | |
| cd08040 | 108 | cd08040, OBF_DNA_ligase_family, The Oligonucleotid | 2e-06 | |
| cd07971 | 115 | cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/ | 3e-04 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 0.003 |
| >gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-103
Identities = 175/558 (31%), Positives = 267/558 (47%), Gaps = 66/558 (11%)
Query: 63 YGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMIS- 121
YG+ E +L + LG+ KD + L + G E L +Q S
Sbjct: 2 YGIGEKLLIKAISSILGIPKDEIEEKVLEDGDLG-----------EVIEGLFSKQKQTSF 50
Query: 122 --GGLTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGI 176
LT+KE+ ++L +A ++ +KI +L +L+K+ E K++I +IL DL++GI
Sbjct: 51 FPAPLTVKEVYEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRIGI 110
Query: 177 SEKSIFHEFH-------PDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQ 227
+EK+I PD E FN+T DL V + L + R +D I++G +P
Sbjct: 111 AEKTILDALAKAFLLSPPDVERAFNLTNDLGKVAKILLEEGLRGLDKDLSIQLGIPFKPM 170
Query: 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSK 286
LA R A +K +E K+DG+R+Q+HK+G + FSR +++ Y ++
Sbjct: 171 LAERAKSIEEALKKKGNG-FYVEYKYDGERVQVHKDGDKFKIFSRRLENYTYAYPEIFTE 229
Query: 287 -IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYFAFDVL 344
I E + CILDGEM+ D + F + K + +C F FD+L
Sbjct: 230 FIKEAFPGIKSCILDGEMVAIDPETGKPLPFQTLLRRKRKYDIKAMEQKVPVCLFVFDIL 289
Query: 345 YVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDE 404
Y+ S+I + L ER E+L+ ++KP R+E + + NV+E
Sbjct: 290 YLNGESLIDEPLIERREILESILKPIPNRIE-IAE----------------MKIVSNVEE 332
Query: 405 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGS 463
+EKF E I EG++LKDL S +EPG R WLK+KPEY+ G LD+++IG YYG
Sbjct: 333 LEKFLNEAISEGCEGLMLKDLKSIYEPGKRGWLWLKVKPEYLEGMGDTLDLVVIGAYYGK 392
Query: 464 GRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 523
G RGG FL+A D F + +VGTG +D +L + KL P + P
Sbjct: 393 GSRGGMYGSFLLACY-----DPESEEFKTITKVGTGFTDADLQELGKKLPPL--WIDPPG 445
Query: 524 RAPPSFYQVTNNSKERPDVWIESPEKSIILSIT-SDIRTIRSEVFSAPYSLRFPRIDRVR 582
PS + PD+W P+ +I+ +T ++I T + SLRFPR R+R
Sbjct: 446 SRVPSI------LPDEPDIW---PDPAIVWEVTGAEI-TKSPAYKANGISLRFPRFSRIR 495
Query: 583 YDKPWHDCLDVQSFVELV 600
DK D ++ EL
Sbjct: 496 DDKGPEDATTIEQIKELY 513
|
All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 514 |
| >gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|153437 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
| >gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >gnl|CDD|153435 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D | Back alignment and domain information |
|---|
| >gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|153441 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|218210 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal region | Back alignment and domain information |
|---|
| >gnl|CDD|153436 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|222893 PHA02587, 30, DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family | Back alignment and domain information |
|---|
| >gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain | Back alignment and domain information |
|---|
| >gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153442 cd08040, OBF_DNA_ligase_family, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|153440 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 879 | |||
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 100.0 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 100.0 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 100.0 | |
| KOG0967 | 714 | consensus ATP-dependent DNA ligase I [Replication, | 100.0 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 100.0 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 100.0 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PHA02587 | 488 | 30 DNA ligase; Provisional | 100.0 | |
| COG1793 | 444 | CDC9 ATP-dependent DNA ligase [DNA replication, re | 100.0 | |
| TIGR02779 | 298 | NHEJ_ligase_lig DNA polymerase LigD, ligase domain | 100.0 | |
| PRK09632 | 764 | ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK08224 | 350 | ligC ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK05972 | 860 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09633 | 610 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK07636 | 275 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| cd07900 | 219 | Adenylation_DNA_ligase_I_Euk Adenylation domain of | 100.0 | |
| TIGR02776 | 552 | NHEJ_ligase_prk DNA ligase D. Members of this prot | 100.0 | |
| cd07903 | 225 | Adenylation_DNA_ligase_IV Adenylation domain of DN | 100.0 | |
| cd07902 | 213 | Adenylation_DNA_ligase_III Adenylation domain of D | 100.0 | |
| cd07901 | 207 | Adenylation_DNA_ligase_Arch_LigB Adenylation domai | 100.0 | |
| PRK09125 | 282 | DNA ligase; Provisional | 100.0 | |
| PHA00454 | 315 | ATP-dependent DNA ligase | 100.0 | |
| cd07898 | 201 | Adenylation_DNA_ligase Adenylation domain of ATP-d | 100.0 | |
| cd08039 | 235 | Adenylation_DNA_ligase_Fungal Adenylation domain o | 100.0 | |
| cd07897 | 207 | Adenylation_DNA_ligase_Bac1 Adenylation domain of | 100.0 | |
| PF01068 | 202 | DNA_ligase_A_M: ATP dependent DNA ligase domain; I | 100.0 | |
| cd07905 | 194 | Adenylation_DNA_ligase_LigC Adenylation domain of | 100.0 | |
| cd07906 | 190 | Adenylation_DNA_ligase_LigD_LigC Adenylation domai | 100.0 | |
| cd07967 | 139 | OBF_DNA_ligase_III The Oligonucleotide/oligosaccha | 100.0 | |
| cd07896 | 174 | Adenylation_kDNA_ligase_like Adenylation domain of | 99.97 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 99.97 | |
| cd06846 | 182 | Adenylation_DNA_ligase_like Adenylation domain of | 99.97 | |
| cd07968 | 140 | OBF_DNA_ligase_IV The Oligonucleotide/oligosacchar | 99.96 | |
| cd07969 | 144 | OBF_DNA_ligase_I The Oligonucleotide/oligosacchari | 99.95 | |
| KOG4437 | 482 | consensus ATP-dependent DNA ligase III [Replicatio | 99.94 | |
| cd07895 | 215 | Adenylation_mRNA_capping Adenylation domain of GTP | 99.94 | |
| cd07972 | 122 | OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligo | 99.94 | |
| cd07893 | 129 | OBF_DNA_ligase The Oligonucleotide/oligosaccharide | 99.93 | |
| cd07971 | 115 | OBF_DNA_ligase_LigD The Oligonucleotide/oligosacch | 99.81 | |
| PF04679 | 97 | DNA_ligase_A_C: ATP dependent DNA ligase C termina | 99.77 | |
| cd08040 | 108 | OBF_DNA_ligase_family The Oligonucleotide/oligosac | 99.77 | |
| cd07894 | 342 | Adenylation_RNA_ligase Adenylation domain of RNA c | 99.68 | |
| cd07970 | 122 | OBF_DNA_ligase_LigC The Oligonucleotide/oligosacch | 99.61 | |
| PF01331 | 192 | mRNA_cap_enzyme: mRNA capping enzyme, catalytic do | 99.29 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 99.22 | |
| COG5226 | 404 | CEG1 mRNA capping enzyme, guanylyltransferase (alp | 99.13 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 99.04 | |
| KOG3226 | 508 | consensus DNA repair protein [Replication, recombi | 98.97 | |
| cd08041 | 77 | OBF_kDNA_ligase_like The Oligonucleotide/oligosacc | 98.95 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 98.85 | |
| COG1423 | 382 | ATP-dependent DNA ligase, homolog of eukaryotic li | 98.81 | |
| PF11411 | 36 | DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 | 98.77 | |
| TIGR01209 | 374 | RNA ligase, Pab1020 family. Members of this family | 98.73 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 98.48 | |
| KOG2481 | 570 | consensus Protein required for normal rRNA process | 98.48 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 98.41 | |
| cd09232 | 186 | Snurportin-1_C C-terminal m3G cap-binding domain o | 98.36 | |
| COG5163 | 591 | NOP7 Protein required for biogenesis of the 60S ri | 98.24 | |
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 98.17 | |
| PF14743 | 66 | DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2 | 97.98 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 97.74 | |
| smart00532 | 441 | LIGANc Ligase N family. | 97.7 | |
| PLN03122 | 815 | Poly [ADP-ribose] polymerase; Provisional | 97.7 | |
| cd00114 | 307 | LIGANc NAD+ dependent DNA ligase adenylation domai | 97.61 | |
| PRK08097 | 562 | ligB NAD-dependent DNA ligase LigB; Reviewed | 97.54 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 97.54 | |
| PF01653 | 315 | DNA_ligase_aden: NAD-dependent DNA ligase adenylat | 97.41 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 97.37 | |
| KOG3524 | 850 | consensus Predicted guanine nucleotide exchange fa | 97.09 | |
| PLN03123 | 981 | poly [ADP-ribose] polymerase; Provisional | 97.01 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.94 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 96.69 | |
| TIGR02307 | 325 | RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t | 96.68 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 96.6 | |
| PF09414 | 186 | RNA_ligase: RNA ligase; InterPro: IPR021122 This e | 96.42 | |
| KOG3548 | 1176 | consensus DNA damage checkpoint protein RHP9/CRB2/ | 96.24 | |
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 95.77 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 95.48 | |
| KOG2093 | 1016 | consensus Translesion DNA polymerase - REV1 deoxyc | 95.39 | |
| PHA02142 | 366 | putative RNA ligase | 95.0 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 94.71 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 94.64 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 94.56 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 93.95 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 93.89 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 93.53 | |
| TIGR02306 | 341 | RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me | 93.03 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 92.38 | |
| COG5275 | 276 | BRCT domain type II [General function prediction o | 92.22 | |
| KOG3132 | 325 | consensus m3G-cap-specific nuclear import receptor | 90.82 | |
| KOG2386 | 393 | consensus mRNA capping enzyme, guanylyltransferase | 87.81 | |
| KOG2043 | 896 | consensus Signaling protein SWIFT and related BRCT | 87.64 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 87.05 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 85.27 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 82.28 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 80.01 |
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-158 Score=1334.08 Aligned_cols=807 Identities=42% Similarity=0.700 Sum_probs=678.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC----ChHhhhHhhcCCCCCcCccccCCCHHHHHHHHHHHh
Q 002803 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDAL 78 (879)
Q Consensus 3 ~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~----~~~~p~lrLllP~~d~~r~~yglke~~L~k~~~~~~ 78 (879)
||+++.|+.+|++|+.|+.+.....|++++++++++|+.+ +|+||+|||+||++||+|+.|||||..||++|+++|
T Consensus 1 ~~~~~~F~~~~~~f~~i~~t~~~~~k~~~~~k~~~s~~~~~e~~sd~y~~lRL~lp~lDReR~~Yglket~La~l~i~~l 80 (881)
T KOG0966|consen 1 MASPQNFSEVVDFFNKIRRTSNVKSKQAKFRKNFESWCRPCEVGSDMYVALRLILPDLDRERGSYGLKETVLARLYIRAL 80 (881)
T ss_pred CCCccccchHHHHHHHHHHhhhhHhHHHHHhhccccccccccCCcchhhhhhhcccchhhcccccCchHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999876 999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhhhcCCC-CCCCCHHHHHHHHHHHHhccChHHHH-HHHHHHHHhC
Q 002803 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI-SGGLTIKELNDLLDRLASSENRAEKI-SVLSTLIKKT 156 (879)
Q Consensus 79 ~~~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~~~-~~~lTi~eVn~~Ld~La~~~~~~~k~-~~l~~ll~~~ 156 (879)
++|++|.||.+|.||+.++..+ |||+.++++++++|+..+ ++.+||.|||++||.||+......+. ..|..|+++|
T Consensus 81 ~lprds~Da~rL~nwr~~~~~~--Gdfs~i~~~vl~~R~~~~~s~alTi~evN~lLD~LA~~~~~~~~~~~~l~~lv~~~ 158 (881)
T KOG0966|consen 81 HLPRDSADAVRLKNWRASTGAR--GDFSLILYEVLQRRCENPSSGALTIKEVNDLLDSLASGPSEDGKKFKKLSQLVEQC 158 (881)
T ss_pred cCCCCcHHHHHHHhhccCCCcC--ccHHHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHcCCchhhhhhhHHHHHHHHhC
Confidence 9999999999999999987655 999999999999998654 45699999999999999988765554 7899999999
Q ss_pred CHHHHHHHHHHHhhhhccCCcccccccccCcCHHHHHhhcCCHHHHHHHHhhhhhccccCC--cccCCcccccceeeccC
Q 002803 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGD 234 (879)
Q Consensus 157 s~~E~k~l~RiIlk~lriG~~e~til~~~hpda~~~~~~~~dL~~V~~~L~~~~~~~~~~~--i~~~~~~~PmLA~~~~~ 234 (879)
||.|+|||+|||||++++|++|++||.+|||||+++|++|+||+.||+.|+||+.+++..+ |++|.+|+||||++...
T Consensus 159 S~~ElkWliriiLK~lklG~se~~Il~vfHPdA~dl~~vtsDLk~Vc~~L~Dp~~~l~~~~~~i~lfsa~~PqLa~~~~~ 238 (881)
T KOG0966|consen 159 SPLELKWLIRIILKNLKLGASEKKILSVFHPDAQDLYNVTSDLKAVCKKLYDPSVGLKELDEDIELFSAFRPQLAQKQKL 238 (881)
T ss_pred CHHHHHHHHHHHHHhhhcCCccchhhhhcCccHHHHHHHhhhHHHHHHHhcCCccCccccccceeehhhcCHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998887 99999999999999876
Q ss_pred hH-HHHHHhCCCceEEEEecceEEEEEEEeCCEEEEEecCCCCCCC-chh----hhHHHHHhhcc---ccceeeeceEEE
Q 002803 235 AH-AAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH----AMSKIIEQNVL---VDRCILDGEMLV 305 (879)
Q Consensus 235 ~~-~~~~~~~~~~~~iE~K~DGeR~qih~~g~~v~~~SR~g~~~t~-~~~----~l~~~~~~~~~---~~~~ILDGEmv~ 305 (879)
.. +++++|++++||+|+|+||||+|+|++|+.++||||||.|||. |+. +......++++ +..||||||||+
T Consensus 239 ~~~~~~e~m~~~~f~lEtK~DGERiQlHk~g~~~~yfSRNg~dyT~~yg~s~~~g~lt~~i~~~f~~~v~~cILDGEMm~ 318 (881)
T KOG0966|consen 239 GDWAIIEKMGGQDFYLETKFDGERIQLHKDGGEYKYFSRNGNDYTYEYGASYAHGTLTQRIHGAFNKEVESCILDGEMMT 318 (881)
T ss_pred chHHHHHHhcCCceEEEeeccCceEEEEecCCEEEEEecCCcchhhhcCcccccccccHHHHhhhhhcchheEecceEEE
Confidence 65 6899999999999999999999999999999999999999993 322 21222223333 789999999999
Q ss_pred eeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEEeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCc
Q 002803 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (879)
Q Consensus 306 ~d~~~~~~~pF~~l~~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~~ 385 (879)
||+.+.++.|||+++++..+... +.+.++||+|||+||+||++|.+.||.+|+++|+.++.|.+++++++
T Consensus 319 wD~~~~~f~~~G~~~dik~~~~~--~~~~qp~yvvfDLLylNgksL~~~~l~qR~e~L~~v~~p~~~~iei~-------- 388 (881)
T KOG0966|consen 319 WDTKTKRFCPFGSNSDIKELSSR--DGSQQPCYVVFDLLYLNGKSLFGAPLHQRLEILKKVIVPKSGRIEIV-------- 388 (881)
T ss_pred eecchhhhccCCchhhHHHhhcc--ccCCCceEEEeeeeeecCcccCCccHHHHHHHHHhcccCCCCeeEEe--------
Confidence 99999999999999988766532 45678999999999999999999999999999999999999998775
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccc-CCCcceEEEEEEEeCCC
Q 002803 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR-AGSDLDVLIIGGYYGSG 464 (879)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGlV~K~~~s~Y~~g~Rs~~WlKvKp~y~~-~g~~lDlvVIG~~~G~G 464 (879)
++..+++.++|+++|++||++|.||||+|.++|.|.||.|+++|+|+||+|+. +|+++|++|||||||.|
T Consensus 389 ---------~~~~~~~~edi~~~f~~ai~~~~EGIVlK~~~S~Y~pg~R~~gW~K~KPeYlkg~g~dLD~lIiGgy~G~g 459 (881)
T KOG0966|consen 389 ---------RSEVGSTKEDIEQFFEEAIDNGEEGIVLKKPDSSYVPGQRSNGWIKLKPEYLKGFGEDLDLLIIGGYYGRG 459 (881)
T ss_pred ---------ehhhcccHHHHHHHHHHHHhcCCCceEEeccCcccCccccCCCcEeecHHHHhhcCccccEEEEecccCCC
Confidence 24568899999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred CCCCCcceEEEEEecCCCCCCCCceEEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCcceeecCCCCCCCcEEE
Q 002803 465 RRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWI 544 (879)
Q Consensus 465 rr~g~~~sfl~g~~~~~~~~~~~~~~~~~~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~Pdvwi 544 (879)
+++|++.+|+||+.++..++.+|.+|.++|+||+|+|++|+..+.+++++||.+ +++..+|++++.. +..+||+||
T Consensus 460 ~rgg~~~~fl~a~~ek~~p~~~p~~f~sfcrvg~g~s~~e~~~v~~klr~~w~~-~~~~apP~s~l~~---tk~~Pd~wI 535 (881)
T KOG0966|consen 460 DRGGKVLSFLCALAEKAPPNSRPEKFCSFCRVGNGISQKERDTVREKLRGHWKP-TSLEAPPESFLFG---TKKIPDVWI 535 (881)
T ss_pred CCCCeeeeeeehhcccCCCCCccceeeEeeEecCCccHHHHHHHHHhhhhhccc-ccccCCCHHHHhc---ccCCCceeE
Confidence 999999999999998877777899999999999999999999999999999987 3455434444443 334799999
Q ss_pred eCCCceEEEEEeeeceecccCccCCCeeeeccEEEEEecCCCccCCCCHHHHHHHHHccCCCcccccccCCCCCCCCccc
Q 002803 545 ESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQF 624 (879)
Q Consensus 545 ~~P~~s~V~ev~a~~~~~~s~~~~~g~tLRfPR~~riR~DK~~~~~~t~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (879)
+ |+.|+|++|++. +++++..|.++|||||||+.++|+||+|+||+|++||.++...+. ++.+.+. ++++
T Consensus 536 ~-P~~SiIlqikaa-~i~~s~~f~tn~tLrfPr~ekvR~DK~W~ec~tl~~l~~l~~~~~-------~d~~~~~-kk~~- 604 (881)
T KOG0966|consen 536 D-PDNSIILQIKAA-EIVPSSNFVTNYTLRFPRIEKVRLDKPWHECLTLNELGDLVNVSK-------SDVEDKE-KKKR- 604 (881)
T ss_pred C-CCCceEEEeehh-eeeecccccccceeecceeeeeecCCcHHHHhhHHHHHHHhcccc-------CCcchhh-hhcc-
Confidence 9 999999999953 456899999999999999999999999999999999999986321 1111111 1111
Q ss_pred ccccccccccccccCCccccCcccccCCCCCcccCeEEEEEcCC-CCCCHHHHHHHHHHcCCEEeeccCCCeeEEEE-ec
Q 002803 625 RSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA-AD 702 (879)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~iF~g~~F~vl~~~-~~~~k~eLe~lI~~~GG~~v~n~~~~~T~~I~-~~ 702 (879)
.+.+++++.+.. -+......+.+.+.+++|.|++|||+++. ..++|++||++|++|||+++||++++.|+||+ |+
T Consensus 605 ~t~~~~k~~~~~---i~~~~~~~~~~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~ 681 (881)
T KOG0966|consen 605 DTLKVRKRTRKA---IHDSAPNRSKVAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAG 681 (881)
T ss_pred cchhhhhhhhhh---hcccccchhcccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEecc
Confidence 111111111111 12334455677788999999999999876 56779999999999999999999988999996 44
Q ss_pred CC--chhhhhhccCCCeeeechHHHhhhcCcccCCCccccccCChhhHhHhhhhhccCCCcccccCCHHHHHHHHhhcCC
Q 002803 703 NK--GLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 780 (879)
Q Consensus 703 ~~--~~k~~~~~~~~~IV~p~Wl~dCi~~~~llp~~p~~~l~~s~~~~~~~~~~~D~ygDSy~~~~~~~~l~~ll~~~~~ 780 (879)
.. ++|.+.+.+.+|||||+||+||++..+++||.|++|||+++.+++.+++++|+|||||+.|++.++|+.+++.+..
T Consensus 682 ~et~~vk~~~~~~~cdVl~p~Wlldcc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~ 761 (881)
T KOG0966|consen 682 KETTRVKAQAIKRSCDVLKPAWLLDCCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKK 761 (881)
T ss_pred ccchHHHHHHHhccCceeeHHHHHHHHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhh
Confidence 43 3455556665699999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCChhhHHHHHhhcCCCCCCCC-CCCcEEEEcCCCCCCCChhHHHHHHHHHHHHHHhhhcCceeccCCC------CCeeE
Q 002803 781 SEDPKTIDYYKKKYCPQDKWSC-FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGVSLPERNI------FYGTR 853 (879)
Q Consensus 781 ~~~~~~~~~l~~~~~~~~~~~l-F~~~~vy~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~GG~v~~~~~------~~vTH 853 (879)
++++...+...+.......+.+ |..|++ |+......+. ........++-.||.+++... ..+||
T Consensus 762 S~ds~~~~~~~~~~~~e~r~~~~~~~~~~-f~~~~~~~~s--------e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~ 832 (881)
T KOG0966|consen 762 SQDSLPPMGASEKDSLERRFSLFLSSLRM-FYVLRRKLSS--------EEVIIELKLKNFGGRITDAQSECNNIGAKYTH 832 (881)
T ss_pred cccccCchhhhhhhcHHHhhcccccccee-eecccccccH--------HHHHHHHHHHHhcceeeeccchhhhcccceee
Confidence 7765322111111111111222 333333 3332222222 222344456778888885433 24799
Q ss_pred EEEc
Q 002803 854 SCML 857 (879)
Q Consensus 854 VVv~ 857 (879)
+|+.
T Consensus 833 ~v~~ 836 (881)
T KOG0966|consen 833 CVLR 836 (881)
T ss_pred eeee
Confidence 9986
|
|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PHA02587 30 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >PRK09632 ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK08224 ligC ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK05972 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK09633 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK07636 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >TIGR02776 NHEJ_ligase_prk DNA ligase D | Back alignment and domain information |
|---|
| >cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >PRK09125 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >PHA00454 ATP-dependent DNA ligase | Back alignment and domain information |
|---|
| >cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07969 OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes | Back alignment and domain information |
|---|
| >cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins | Back alignment and domain information |
|---|
| >cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >KOG3226 consensus DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining | Back alignment and domain information |
|---|
| >TIGR01209 RNA ligase, Pab1020 family | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 | Back alignment and domain information |
|---|
| >COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00532 LIGANc Ligase N family | Back alignment and domain information |
|---|
| >PLN03122 Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain | Back alignment and domain information |
|---|
| >PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03123 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain | Back alignment and domain information |
|---|
| >KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA02142 putative RNA ligase | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family | Back alignment and domain information |
|---|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >COG5275 BRCT domain type II [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 879 | ||||
| 4hto_A | 240 | Crystal Structure Of The Dbd Domain Of Human Dna Li | 2e-38 | ||
| 2hiv_A | 621 | Atp-Dependent Dna Ligase From S. Solfataricus Lengt | 7e-33 | ||
| 3l2p_A | 579 | Human Dna Ligase Iii Recognizes Dna Ends By Dynamic | 6e-31 | ||
| 3rr5_A | 570 | Dna Ligase From The Archaeon Thermococcus Sp. 1519 | 1e-29 | ||
| 4eq5_A | 571 | Dna Ligase From The Archaeon Thermococcus Sibiricus | 4e-29 | ||
| 2cfm_A | 561 | Atp-Dependent Dna Ligase From Pyrococcus Furiosus L | 6e-29 | ||
| 1x9n_A | 688 | Crystal Structure Of Human Dna Ligase I Bound To 5' | 5e-25 | ||
| 3gde_A | 558 | The Closed Conformation Of Atp-Dependent Dna Ligase | 9e-20 | ||
| 3vnn_A | 139 | Crystal Structure Of A Sub-Domain Of The Nucleotidy | 4e-17 | ||
| 1vs0_A | 310 | Crystal Structure Of The Ligase Domain From M. Tube | 4e-07 | ||
| 3ii6_X | 263 | Structure Of Human Xrcc4 In Complex With The Tandem | 2e-06 |
| >pdb|4HTO|A Chain A, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv Apo Form Length = 240 | Back alignment and structure |
|
| >pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 | Back alignment and structure |
| >pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 | Back alignment and structure |
| >pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 | Back alignment and structure |
| >pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 | Back alignment and structure |
| >pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 | Back alignment and structure |
| >pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 | Back alignment and structure |
| >pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 | Back alignment and structure |
| >pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 | Back alignment and structure |
| >pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 | Back alignment and structure |
| >pdb|3II6|X Chain X, Structure Of Human Xrcc4 In Complex With The Tandem Brct Domains Of Dna Ligaseiv. Length = 263 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 | Back alignment and structure |
|---|
Score = 447 bits (1151), Expect = e-147
Identities = 139/613 (22%), Positives = 234/613 (38%), Gaps = 67/613 (10%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYCD----SVDYFSALRLILPSLDRERGSYGLKE 67
L + K + FL D + ++L+LP + Y L +
Sbjct: 12 FRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLP--GVIKTVYNLND 69
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI---SGGL 124
+ + D G+ ++ + L
Sbjct: 70 KQIVKLFSRIFNCNPDDMARDL-----------EQGDVSETIRVFFEQSKSFPPAAKSLL 118
Query: 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE 184
TI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 119 TIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDA 178
Query: 185 FHPDAEDLFNVTCDLKLVCEKLKDRNQR---------HKRQDIEVGKAVRPQLAMRIGDA 235
P+A + F + +L+ V E++ Q + V+P LA
Sbjct: 179 LDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSV 238
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHAMSKIIEQNVL 293
A +K + E K+DG+R+Q+HKNG YFSRS H I +
Sbjct: 239 EYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPG 297
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIH 353
ILD E+L+ D + FG+ KAA D +C F FD +Y D S++
Sbjct: 298 GHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQ----DANVCLFVFDCIYFNDVSLMD 353
Query: 354 QSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI 413
+ L ER + L + R+ ++ I
Sbjct: 354 RPLCERRKFLHDNMVEIPNRIM-FSE----------------MKRVTKALDLADMITRVI 396
Query: 414 ENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIGGYYGSGRRGGEV 470
+ EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++G +YG G +GG +
Sbjct: 397 QEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMM 454
Query: 471 AQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFY 530
+ FL+ + P + +++ + + G D L + +L K PS+
Sbjct: 455 SIFLMGCYD---PGS--QKWCTVTKCAGGHDDATLARLQNELDMV--KISKDPSKIPSWL 507
Query: 531 QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDC 590
+V N PD + P+K+ + IT + + S+RFPR R+R DK W
Sbjct: 508 KV--NKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSA 565
Query: 591 LDVQSFVELVHSS 603
++ EL S
Sbjct: 566 TNLPQLKELYQLS 578
|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 | Back alignment and structure |
|---|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 | Back alignment and structure |
|---|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 | Back alignment and structure |
|---|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 | Back alignment and structure |
|---|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 | Back alignment and structure |
|---|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 | Back alignment and structure |
|---|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Length = 461 | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 | Back alignment and structure |
|---|
| >2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 | Back alignment and structure |
|---|
| >2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Length = 133 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 879 | ||||
| d1x9na3 | 220 | d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( | 2e-35 | |
| d1x9na2 | 148 | b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (H | 1e-28 | |
| d1a0ia2 | 239 | d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te | 1e-21 | |
| d1x9na1 | 272 | a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( | 1e-17 | |
| d1fvia2 | 188 | d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te | 5e-16 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 1e-14 | |
| d1s68a_ | 233 | d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba | 2e-14 | |
| d1in1a_ | 88 | c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa | 9e-13 | |
| d1p16a2 | 245 | d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu | 6e-12 | |
| d1cdza_ | 96 | c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom | 3e-11 | |
| d1ckma2 | 228 | d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA | 5e-09 | |
| d1t15a2 | 102 | c.15.1.3 (A:1758-1859) Breast cancer associated pr | 7e-09 | |
| d1t15a1 | 109 | c.15.1.3 (A:1649-1757) Breast cancer associated pr | 1e-06 |
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 132 bits (331), Expect = 2e-35
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLD 276
+ G ++P LA ++ E K+DG R QIH G E+ FSR+ D
Sbjct: 1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 60
Query: 277 HSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR 334
++ + I + L V ILD E + WD + F + D
Sbjct: 61 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQV 120
Query: 335 QLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPC 394
Q+C +AFD++Y+ S++ + L R +LL++ ++G
Sbjct: 121 QVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEF-----------------VFA 163
Query: 395 WSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYI 446
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+
Sbjct: 164 TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYL 217
|
| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 | Back information, alignment and structure |
|---|
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 879 | |||
| d1x9na3 | 220 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1a0ia2 | 239 | ATP-dependent DNA ligase, N-terminal domain {Bacte | 100.0 | |
| d1x9na2 | 148 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1fvia2 | 188 | ATP-dependent DNA ligase, N-terminal domain {Chlor | 99.98 | |
| d1ckma2 | 228 | RNA guanylyltransferase (mRNA capping enzyme), N-t | 99.88 | |
| d1p16a2 | 245 | mRNA capping enzyme alpha subunit {Yeast (Candida | 99.86 | |
| d1s68a_ | 233 | RNA ligase 2, N-terminal domain {Bacteriophage T4 | 99.66 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 99.56 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 99.52 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.4 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 99.38 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.02 | |
| d1kzyc1 | 153 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 98.51 | |
| d1a0ia1 | 109 | ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: | 98.09 | |
| d1ta8a_ | 313 | Adenylation domain of NAD+-dependent DNA ligase {E | 98.01 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 97.99 | |
| d1b04a_ | 312 | Adenylation domain of NAD+-dependent DNA ligase {B | 97.97 | |
| d1fvia1 | 104 | ATP-dependent DNA ligase {Chlorella virus PBCV-1 [ | 97.9 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 97.75 | |
| d1dgsa3 | 314 | Adenylation domain of NAD+-dependent DNA ligase {T | 97.38 | |
| d1xdna_ | 265 | RNA editing ligase MP52 {Trypanosoma brucei [TaxId | 97.21 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 96.85 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 95.94 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 95.19 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 94.75 | |
| d1kzyc2 | 106 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 89.89 |
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=338.78 Aligned_cols=211 Identities=27% Similarity=0.527 Sum_probs=175.7
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCEEEEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHC--CC
Q ss_conf 656974553000302695899987079826999841337899999-198899993589887874143689998611--23
Q 002803 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNV--LV 294 (879)
Q Consensus 218 i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~iE~K~DGeR~qih~-~g~~v~~fSR~g~d~t~~~~~l~~~~~~~~--~~ 294 (879)
|++|.|++||||++.....+.++++.+.+|++|+||||+|||+|+ .++.+++|||+|+++|..+|++.+.+.... ..
T Consensus 1 ~~pg~P~~PMLA~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~i~~~~~~~v~l~SR~g~~~t~~~p~l~~~~~~~~~~~~ 80 (220)
T d1x9na3 1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV 80 (220)
T ss_dssp CCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTC
T ss_pred CCCCCCCCCEECCCCCCHHHHHHHCCCCCEEEEEEECCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 97989888705887887378985157983899994971789999977998999967776021224169999998535787
Q ss_pred CCEEEECEEEEEECCCCCCCCCCCHHHHHHHHHCCC---CCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 532430109986179874345553699999841389---88985399999998758912568899999999985207899
Q 002803 295 DRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSK 371 (879)
Q Consensus 295 ~~~ILDGElv~~d~~~~~~~pFg~l~~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~i~~~~ 371 (879)
.++||||||++||.....+.+|+. +....+... ....+++|+|||||++||.++++.||.+|+++|++++.+.+
T Consensus 81 ~~~iLDGEl~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vFDil~~~g~~~~~~p~~eR~~~L~~~~~~~~ 157 (220)
T d1x9na3 81 TSFILDTEAVAWDREKKQIQPFQV---LTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE 157 (220)
T ss_dssp CCEEEEEEEEEECTTTCSBCCHHH---HTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT
T ss_pred CCEEEEEEEEEECCCCCCCCHHHH---HHHHHHCCCCHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 431664236886278886303888---76551023423441255412788878778964054437888899999725678
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 9610003688987554689998642124899899999999997699548971--3999976799999839976321137
Q 002803 372 GRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA 448 (879)
Q Consensus 372 ~~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~~i~~g~EGiVlK--~~~s~Y~~g~R~~~WiKiKpey~~~ 448 (879)
+++.++. ...+++.+++.++++.++++|.||||+| +++|+|.+|+|+.+|+|+||||+++
T Consensus 158 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~~~s~Y~~GkRs~~w~K~K~ey~d~ 219 (220)
T d1x9na3 158 GEFVFAT-----------------SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDG 219 (220)
T ss_dssp TTEEECC-----------------EECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHHS
T ss_pred CEEEEEE-----------------EECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCEEEECCCCCCC
T ss_conf 7199987-----------------5405999999999999998799649986059998751599599849986005483
|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
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| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
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| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
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| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
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| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
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| >d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
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| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
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| >d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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