Citrus Sinensis ID: 002828

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870------
MEEQVLSEGADHEDDESSTCGSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVTDH
ccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHccccEEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEcHHHHHHHHccccEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcEEEEEcEEEEEEEEEEEEEEEccccccccccccccccccHHHHHHHHHcccccccccHHHHccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHcccEEEEEEccccccccccccccccccccccEEEEEEEcccEEEEEEcccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccHHcccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEEEEHccccccccccEEEEccccccEEEEccccEEEEEEEEccccEEEEEEEEcccccccccHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEcHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHccccccccccHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEEccEEccccccHccccHHHHHHHHHHccccccHHHHHHHccHHHcccccccccccccccccccccccccccccccccccHHcccccHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHEccccHHHHHHHHcEEEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEEccccccccccHHHHHcccccccccccHHHHHHHHHHHHHccc
meeqvlsegadheddesstcgstvgneddvdfssaftTDMVFNSREELVEWIRDTGKRNGLVIVIKksdvggdgrrpritfacersgayrrkytegqtpkrpkttgtkkcgcpfllkghkldtdddwILKVVCgvhnhpvtqhveghsyagrltEQEANILVdlsrsnispkeILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEwhryneetdcfkdlfwahpfavgllrafpsvvmidctyktsmypfsFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSmmeddalprvivtdKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGamesdfsrypqAIDYVKQTWLANYKEKFVAAWTDLAMHFGnvtmnrgettHTKLKRLLavpqgnfeTSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIilgeseradsvglnasacgcvfrrthglpcahEIAEykherrsipllavdrhwkkldfvpvtqdTALELSFRAEIEMFVKRFeetdgpgkRQLLKKLKELtnsastfnsasTSLVelevdgfplsklgtstyqdpseLQYVLsvqdsdsaplrtssatsmqlkgrqkekvfrtkshqplcfidsfpaglrpyihdvqdviadghcGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLsysesnpgiehrmimpdtgHLIASRYNIVLMHLSqqqcftflplrsvplprtsrkivtIGFVNECQFVKvfmhpgapmppispkwlehrypcaqgwetpytAHIRVFRDLVTDH
MEEQVLsegadheddesstcgstvgneddVDFSSAFTTDMVFNSREELVEWIrdtgkrnglvivikksdvggdgrrpritfacersgayrrkytegqtpkrpkttgtkkcgcPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILqtlkqrdmhNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAyleserddnYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRfeetdgpgkRQLLKKLKELtnsastfnsastslveLEVDGFPLSKLGTSTYQDPSELQYVLSVQdsdsaplrtssatsmqlkgrqkekvfrtkshqplCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVTDH
MEEQVLSEGADHEDDESSTCGSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQtpkrpkttgtkkcgcpFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELtnsastfnsastsLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVTDH
*******************************FSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAY******************KKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRF**********************************LEVDGF*****************************************************HQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLV***
********************************SSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYR****************TKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQE*********************KQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVE************************************************************************LRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVT**
**********************TVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQ**************************RTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVTDH
*********************************SAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQ******************************HQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDL****
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MEEQVLSEGADHEDDESSTCGSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLEHRYPCAQGWETPYTAHIRVFRDLVTDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query876 2.2.26 [Sep-21-2011]
Q9SZL8788 Protein FAR1-RELATED SEQU yes no 0.316 0.351 0.241 3e-12
Q9SY66680 Protein FAR1-RELATED SEQU no no 0.343 0.442 0.201 8e-07
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.448 0.475 0.206 1e-06
Q3EBQ3807 Protein FAR1-RELATED SEQU no no 0.399 0.433 0.208 1e-06
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.386 0.482 0.219 6e-06
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.123 0.137 0.279 3e-05
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.328 0.343 0.196 0.0002
Q9ZVC9851 Protein FAR1-RELATED SEQU no no 0.133 0.137 0.237 0.0003
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function desciption
 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 115/302 (38%), Gaps = 25/302 (8%)

Query: 73  DGRRPRITFACERSG--AYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILK 130
           DG   +  F C + G      K T+ +  KRP+T    + GC   L   K+     W++ 
Sbjct: 111 DGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTI--TRVGCKASLSV-KMQDSGKWLVS 167

Query: 131 VVCGVHNHPVTQHVEGHSY-AGRLTEQEANILVD-LSRSNISPKEILQTL-------KQR 181
                HNH +    + H   + R     A  L+D L  + + P+ I+  L        + 
Sbjct: 168 GFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKV 227

Query: 182 DMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRY----NEETDCFKD 237
               V     + N R K   GE      +  LLD LR+      + +      E     +
Sbjct: 228 GFTEVDCRNYMRNNRQKSIEGE------IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGN 281

Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
           +FWA P A+     F   V  D TY+++ Y   F    G            A++ +E + 
Sbjct: 282 VFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEA 341

Query: 298 NYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKK 357
           +++W      + M     P  I TD D  +  +I  VFP A +  C+WHI K        
Sbjct: 342 SFVWLFNTWLAAMSAHP-PVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSH 400

Query: 358 LF 359
           +F
Sbjct: 401 VF 402
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query876
356499731878 PREDICTED: uncharacterized protein LOC10 0.944 0.941 0.410 0.0
297744547701 unnamed protein product [Vitis vinifera] 0.703 0.878 0.488 0.0
356536595877 PREDICTED: uncharacterized protein LOC10 0.946 0.945 0.414 0.0
147776975773 hypothetical protein VITISV_001036 [Viti 0.621 0.703 0.542 1e-180
356529783 1403 PREDICTED: uncharacterized protein LOC10 0.681 0.425 0.425 1e-137
92893886 985 Ovarian tumour, otubain [Medicago trunca 0.947 0.842 0.320 1e-127
124361025 1063 Ovarian tumour, otubain, putative [Medic 0.940 0.775 0.313 1e-123
357438051 1379 Cysteine-rich receptor-like protein kina 0.892 0.567 0.302 1e-109
87241356795 Ovarian tumour, otubain [Medicago trunca 0.794 0.875 0.312 2e-98
356536993426 PREDICTED: protein FAR1-RELATED SEQUENCE 0.460 0.946 0.436 2e-96
>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max] Back     alignment and taxonomy information
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/863 (41%), Positives = 519/863 (60%), Gaps = 36/863 (4%)

Query: 27  EDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGG-----------DGR 75
           +  VD S AF T  VF SRE ++ W RD  K NG V++I +S+              + R
Sbjct: 21  DKSVDCSDAFNTTEVFPSREAMLNWARDVAKENGFVLIILRSETSTRSTKYTRSTRCNQR 80

Query: 76  RPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGV 135
           +  +   C+RSG YR  Y    + K    +GT+KC CPF LKG  L   + WI+KV+CG 
Sbjct: 81  KTFVIMGCDRSGKYRGPYKNALSRK---VSGTRKCECPFKLKGKALKKAEGWIVKVMCGC 137

Query: 136 HNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNA 195
           HNH + + + GH YAGRL+ +E +++  L++S + PK+IL TLK  +M NV+TIK IYNA
Sbjct: 138 HNHDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMGNVTTIKQIYNA 197

Query: 196 RHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSV 255
           R  YR  ++  +  M  LL  L    Y+ WHR  +++D  +D+FW HP A+ LL AF +V
Sbjct: 198 RQAYRSSKKGSE--MQHLLKLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAIKLLGAFNTV 255

Query: 256 VMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMM-EDDA 314
           ++ID TYKT+ Y    LEIVG TSTELTFS+AFA++ESER DN+ W L++LR ++ ++D 
Sbjct: 256 LIIDSTYKTTRYQLPLLEIVGVTSTELTFSVAFAFVESERADNFTWALQKLRGLIVKEDD 315

Query: 315 LPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNV 374
           +P+VIVT  D+ALM++++ VFP ++NLLCR+HI++N+   CK +  +KE+ +  + +W+V
Sbjct: 316 MPQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHSKEKQDMVMDAWDV 375

Query: 375 LVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMN 434
           +V S  E EYMQ L   E+    +P   DYVK TWL  +KEKFV AWT+  MH GN   N
Sbjct: 376 IVNSPNEGEYMQRLAFFENVCLDFPIFGDYVKNTWLIPHKEKFVTAWTNRVMHLGNTATN 435

Query: 435 RGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEE 494
           R E TH +LK LL   + +  + W  + +++  QH EI+ASFE+S  +V+H    P + +
Sbjct: 436 RVEATHWRLKTLLQDSKEDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHRHNTPFYVK 495

Query: 495 LRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLA 554
           L GFVS +A++ I  E +R  + G+++S CGC+ R THGLPCA E+A Y      IPL A
Sbjct: 496 LVGFVSRSALSHITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEA 555

Query: 555 VDRHWKKLDFVP-VTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTF 613
           +  HW+KL F    T D   ELS + E++   KRF+E D  GK  L+ KL E+    +  
Sbjct: 556 IHAHWRKLKFSDHGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTAL 615

Query: 614 NSASTSLVELEVDGFPLS---KLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKG 670
                   E+   G P     K   ST  DPS L+  L        P R S+++      
Sbjct: 616 KCLPPE--EVGTKGAPEGLRWKSDGSTKFDPSYLELALR-------PARDSTSSLSS--- 663

Query: 671 RQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQV 730
             ++ V  +K  + L  +D FP  + P+I D+ DV  D +CG+R VA  + +GE++WA V
Sbjct: 664 -SQKTVHESKRRRVLPMMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALV 722

Query: 731 RRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNI 790
           R+DL+ ELQ   D+Y +L+G  +   EL  SL Y      +   M +PD G++IASRYN+
Sbjct: 723 RQDLIRELQQWQDNYAKLFGSNDRVAELRKSL-YVGKQASVASWMTIPDMGYVIASRYNV 781

Query: 791 VLMHLSQQQCFTFLPLRS-VPLPRTSRKIVTIGFVNECQFVKVFMHPGAPMPPISPKWLE 849
           VL+ LS Q+C TF PLR   PL ++S ++++IGFV++C FV+V +   + +PP + +W  
Sbjct: 782 VLVTLSLQECMTFFPLRGRPPLSQSSHRLISIGFVHKCHFVQVVLKADSAIPPTALQWSR 841

Query: 850 HRYPCAQGWETPYTAHIRVFRDL 872
           +    ++ WET Y + ++ FR L
Sbjct: 842 YCNAESRSWETSYVSRMQQFRSL 864

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max] Back     alignment and taxonomy information
>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max] Back     alignment and taxonomy information
>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula] Back     alignment and taxonomy information
>gi|124361025|gb|ABN08997.1| Ovarian tumour, otubain, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|357438051|ref|XP_003589301.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355478349|gb|AES59552.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|87241356|gb|ABD33214.1| Ovarian tumour, otubain [Medicago truncatula] Back     alignment and taxonomy information
>gi|356536993|ref|XP_003537016.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query876
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.339 0.376 0.233 1.2e-09
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.463 0.490 0.199 2.1e-08
CGD|CAL0004344568 orf19.4703 [Candida albicans ( 0.170 0.262 0.248 7e-08
UNIPROTKB|Q5AME3568 CaO19.4703 "Putative uncharact 0.170 0.262 0.248 7e-08
TAIR|locus:2062606807 FRS2 "FAR1-related sequence 2" 0.198 0.215 0.213 2.1e-05
ASPGD|ASPL0000057040404 AN0859 [Emericella nidulans (t 0.181 0.393 0.242 5.6e-05
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.273 0.341 0.253 8e-05
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.262 0.314 0.210 0.00048
CGD|CAL0006339573 orf19.4959 [Candida albicans ( 0.176 0.270 0.236 0.00056
UNIPROTKB|Q5AL18573 CaO19.4959 "Putative uncharact 0.176 0.270 0.236 0.00056
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 181 (68.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 73/312 (23%), Positives = 123/312 (39%)

Query:   120 KLDTDDDWILKVVCGVHNHPVTQHVEGHSYAG-RLTEQEANILVD-LSRSNISPKEILQT 177
             K+     W++      HNH +    + H     R     A  L+D L  + + P+ I+  
Sbjct:   157 KMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSA 216

Query:   178 LKQRDMHNVSTIKAI-YNARHKYRVGEQVG-QLHMHQLLDKLRK----HGYIEWHRYNEE 231
             L  ++   +S +     + R+  R   Q   +  +  LLD LR+    +    +     E
Sbjct:   217 LI-KEYGGISKVGFTEVDCRNYMRNNRQKSIEGEIQLLLDYLRQMNADNPNFFYSVQGSE 275

Query:   232 TDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYL 291
                  ++FWA P A+     F   V  D TY+++ Y   F    G            A++
Sbjct:   276 DQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFI 335

Query:   292 ESERDDNYIWTLERLRSMMEDDALPRV-IVTDKDLALMNSIRAVFPRATNLLCRWHISKN 350
              +E + +++W      + M   A P V I TD D  +  +I  VFP A +  C+WHI K 
Sbjct:   336 INETEASFVWLFNTWLAAMS--AHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKK 393

Query:   351 ISVNCKKLFETKERWEAFICSWNVLVLSVTEQE--YMQHLGAMESDFSRYPQAIDYVKQT 408
                    +F     +E+       L  SV + E  +   L   E     + QAI   ++ 
Sbjct:   394 CQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQ 453

Query:   409 WLANY-KEKFVA 419
             W+  Y ++ F A
Sbjct:   454 WVPVYLRDTFFA 465
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057040 AN0859 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0006339 orf19.4959 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AL18 CaO19.4959 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Pc21g00130
Pc21g00130 (605 aa)
(Penicillium chrysogenum)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query876
pfam1055188 pfam10551, MULE, MULE transposase domain 3e-17
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 8e-08
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information 
 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 260 CTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVI 319
            TY T+     +   VG       F +AFA +  E ++++ W LE L+  +     P  I
Sbjct: 1   GTYLTN----KYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP-PLTI 55

Query: 320 VTDKDLALMNSIRAVFPRATNLLCRWHISKNIS 352
           ++D D  L  +I+ VFP A + LC WHI +N+ 
Sbjct: 56  ISDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 876
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.81
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.67
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.63
PF02338121 OTU: OTU-like cysteine protease; InterPro: IPR0033 99.61
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 99.43
KOG2606302 consensus OTU (ovarian tumor)-like cysteine protea 99.33
COG3328379 Transposase and inactivated derivatives [DNA repli 99.05
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.9
KOG2605371 consensus OTU (ovarian tumor)-like cysteine protea 98.6
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.4
PF10275244 Peptidase_C65: Peptidase C65 Otubain; InterPro: IP 97.59
KOG3288307 consensus OTU-like cysteine protease [Signal trans 97.56
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 97.48
KOG3991256 consensus Uncharacterized conserved protein [Funct 96.39
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 96.08
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 95.51
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 94.29
COG5539306 Predicted cysteine protease (OTU family) [Posttran 94.1
PF05412108 Peptidase_C33: Equine arterivirus Nsp2-type cystei 93.62
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 92.63
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 90.29
PF13610140 DDE_Tnp_IS240: DDE domain 88.56
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-80  Score=726.05  Aligned_cols=511  Identities=19%  Similarity=0.269  Sum_probs=411.4

Q ss_pred             CCCCCCCCCceecCHHHHHHHHHHHhhccCEEEEEEeecCCC-CCCCceEEEEEecCCccCCCCCCCCCC------C---
Q 002828           31 DFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGG-DGRRPRITFACERSGAYRRKYTEGQTP------K---  100 (876)
Q Consensus        31 ~~~~~~~~g~~F~S~de~~~~~~~ya~~~GF~v~~~~S~~~~-~g~~~~~~~vC~r~G~~r~~~~~~~~~------~---  100 (876)
                      +....|.+||+|+|.|||++||+.||...||+||+.++.+++ ++.++.++|+|+|+|+++.+.....+.      .   
T Consensus        69 ~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~  148 (846)
T PLN03097         69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPE  148 (846)
T ss_pred             CCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcc
Confidence            444578999999999999999999999999999999998876 677888999999999765432100000      0   


Q ss_pred             -CCCCCCcceeCCccEEEEeeeCCCCCeEEEEEccccCCCCCCCccccccccCCCHHHHHHHHHHhhCCCChHHHHHHHH
Q 002828          101 -RPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLK  179 (876)
Q Consensus       101 -~rr~~~s~~~gCp~~i~~~~~~~~~~w~V~~~~~~HNH~~~~~~~~~~~~rrl~~~~k~~i~~l~~~~~~p~~I~~~l~  179 (876)
                       .+++++.+++||+|+|+++. ..+|+|.|+.+..+|||++.++...       +...+.....+..          .+.
T Consensus       149 ~~~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~-------~~~~r~~~~~~~~----------~~~  210 (846)
T PLN03097        149 NGTGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAV-------SEQTRKMYAAMAR----------QFA  210 (846)
T ss_pred             cccccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCcccc-------chhhhhhHHHHHh----------hhh
Confidence             01123457899999999965 5689999999999999999976321       1122221111110          000


Q ss_pred             hcCCCccchHHHHHHHHHHhhhccccCcchHHHHHHHHH----hcCcEEEEEeecCCCceeeeEecChHHHHHHHhCCce
Q 002828          180 QRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLR----KHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSV  255 (876)
Q Consensus       180 ~~~~~~~~t~kdi~n~~~~~r~~~~~g~~~~~~ll~~l~----e~~~~~~~~~~d~~~~~~~if~~~~~~~~~~~~~~~v  255 (876)
                      . +.....+..+..|...+.|..... ..+++.|+++|+    ++|.|+|++++|+++++++|||+++.++..|.+||||
T Consensus       211 ~-~~~v~~~~~d~~~~~~~~r~~~~~-~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDv  288 (846)
T PLN03097        211 E-YKNVVGLKNDSKSSFDKGRNLGLE-AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDV  288 (846)
T ss_pred             c-cccccccchhhcchhhHHHhhhcc-cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCE
Confidence            0 000112334445554444443332 338999999985    5999999999999999999999999999999999999


Q ss_pred             EEEeccccCCCCCCeeEEEEeecCCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHHHHHHHhC
Q 002828          256 VMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVF  335 (876)
Q Consensus       256 l~iD~T~~tn~~~~~l~~~~g~~~~~~~~~va~al~~~E~~~s~~w~l~~l~~~~~~~~~P~~ivtD~d~al~~Ai~~vf  335 (876)
                      |+||+||.||+|++||..|+|+|+|++++++|+||+.+|+.++|.|+|++|+++| ++..|++||||+|.+|.+||.+||
T Consensus       289 V~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM-~gk~P~tIiTDqd~am~~AI~~Vf  367 (846)
T PLN03097        289 VSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM-GGQAPKVIITDQDKAMKSVISEVF  367 (846)
T ss_pred             EEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh-CCCCCceEEecCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999 889999999999999999999999


Q ss_pred             CCccccchhhhhhhhhHhhhhhhhhchhHHHHHHHhhhhcc-cCcCHHHHHHHHHHhHhhcccchhHHHHHHHhhhhhhH
Q 002828          336 PRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLV-LSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYK  414 (876)
Q Consensus       336 P~~~~~lC~~Hi~kn~~~~~~~~~~~~~~~~~~~~~~~~l~-~s~t~~~f~~~~~~l~~~~~~~~~~~~y~~~~Wl~~~k  414 (876)
                      |++.|++|.|||++|+.+++...+..   .+.|...|..++ .+.++++|+..|..|.+.+.-..  .+|+..-|  ..|
T Consensus       368 P~t~Hr~C~wHI~~~~~e~L~~~~~~---~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~--n~WL~~LY--~~R  440 (846)
T PLN03097        368 PNAHHCFFLWHILGKVSENLGQVIKQ---HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKE--DEWMQSLY--EDR  440 (846)
T ss_pred             CCceehhhHHHHHHHHHHHhhHHhhh---hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--cHHHHHHH--HhH
Confidence            99999999999999999999877643   346777776654 59999999999999988763211  13333332  479


Q ss_pred             HHHHHHhhccccccCcccccccchhhHhHhhhhcCCCCChhhHHHHHHHHHHH-HHHHHHHHhhhccceeecccchhHHH
Q 002828          415 EKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQ-QHYEIKASFERSSTIVQHNFKVPIFE  493 (876)
Q Consensus       415 e~w~~~~~~~~~~~g~~Ttn~~Es~n~~LK~~l~~s~~~l~~~~~~i~~~i~~-~~~~i~~~~~~~~~~~~~~~~~~~~~  493 (876)
                      ++||++|+++.|.+|+.||+++||+|+.||+++.. ..+|..|+.+++.+++. ..+|..++++.....+......|+.+
T Consensus       441 ekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~-~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEk  519 (846)
T PLN03097        441 KQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHK-KTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEK  519 (846)
T ss_pred             hhhhHHHhcccccCCcccccccccHHHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHH
Confidence            99999999999999999999999999999999975 67899999999999985 66778888877666555556678999


Q ss_pred             HhhhhhcHHHHHHhhcccccc---------------------------cccC----CcCCCCCccccccCCccchhHhhH
Q 002828          494 ELRGFVSLNAMNIILGESERA---------------------------DSVG----LNASACGCVFRRTHGLPCAHEIAE  542 (876)
Q Consensus       494 ~l~~~is~~a~~~~~~e~~~~---------------------------~~V~----~~~~~CsC~~~~~~GlPC~H~lav  542 (876)
                      ++.+.+|+.+|+.++.|+..+                           +.|.    ....+|+|.+|+..||||+|+|+|
T Consensus       520 QAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkV  599 (846)
T PLN03097        520 SVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVV  599 (846)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHH
Confidence            999999999999998775321                           0111    135699999999999999999999


Q ss_pred             HhhcC-CCCCccccccccccccCCCCccc
Q 002828          543 YKHER-RSIPLLAVDRHWKKLDFVPVTQD  570 (876)
Q Consensus       543 ~~~~~-~~lp~~~i~~rW~~~~~~~~~~~  570 (876)
                      +.+.+ ..||..||++|||+.+......+
T Consensus       600 L~~~~v~~IP~~YILkRWTKdAK~~~~~~  628 (846)
T PLN03097        600 LQMCQLSAIPSQYILKRWTKDAKSRHLLG  628 (846)
T ss_pred             HhhcCcccCchhhhhhhchhhhhhcccCc
Confidence            99998 89999999999999988765433

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG3991 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00774 WRKY DNA binding domain Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query876
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 78.7 bits (193), Expect = 6e-15
 Identities = 108/676 (15%), Positives = 201/676 (29%), Gaps = 193/676 (28%)

Query: 209 HMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYP 268
           H H  +D              E    +KD+            AF  V   DC       P
Sbjct: 2   HHHHHMD----------FETGEHQYQYKDILSV------FEDAF--VDNFDC-KDVQDMP 42

Query: 269 FSFL------EIVGATSTE----LTF--------SIAFAYLESERDDNYIWTLERLRSMM 310
            S L       I+ +          F         +   ++E     NY + +  +++  
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 311 EDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFI- 369
              ++   +  ++   L N  + VF +    + R      +    + L E +      + 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQ-VFAKYN--VSRLQPYLKLR---QALLELRP--AKNVL 154

Query: 370 ------CSWNVLVLSVTEQEYMQHLGAMES-----DFSRYPQAIDYVKQTWLANYKEKFV 418
                      + L V     +Q    M+      +          ++   L     +  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEM--LQKLLYQID 210

Query: 419 AAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLL---EQQHYEIKAS 475
             WT  + H  N+ + R  +   +L+RLL         S    + LL     Q+ +   +
Sbjct: 211 PNWTSRSDHSSNIKL-RIHSIQAELRRLLK--------SKPYENCLLVLLNVQNAKAWNA 261

Query: 476 FE-RSSTIVQHNFKVPIFEEL----RGFVSLNAMNIILGESERADSVGLNASACGCVFRR 530
           F      ++   FK  + + L       +SL+  ++ L   E      L      C   R
Sbjct: 262 FNLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDC---R 314

Query: 531 THGLP---CAHE------IAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEI 581
              LP             IAE   +  +        +WK ++   +T            I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTT----------II 359

Query: 582 EMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKL-GTSTYQD 640
           E  +   E  +    R++  +L       S F    ++ +   +    LS +       D
Sbjct: 360 ESSLNVLEPAE---YRKMFDRL-------SVFP--PSAHIPTIL----LSLIWFDVIKSD 403

Query: 641 PSEL-----QYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGL 695
              +     +Y L  +        T S  S+ L+ + K +      H+ +  +D +    
Sbjct: 404 VMVVVNKLHKYSLVEKQPKE---STISIPSIYLELKVKLENEYAL-HRSI--VDHYNIPK 457

Query: 696 RPYIHDVQDVIADG----HCG--------------FRVVAELMDIGEDNW--AQVRRD-- 733
                D+     D     H G              FR+V   +D     +   ++R D  
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDF---RFLEQKIRHDST 512

Query: 734 -------LVDELQ--SHYDDYIQLYGDA--EIARELLHSLSYSESNPGIEHRMIMPDTGH 782
                  +++ LQ    Y  YI         +   +L  L      P IE         +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL------PKIEE--------N 558

Query: 783 LIASRY-NIV---LMH 794
           LI S+Y +++   LM 
Sbjct: 559 LICSKYTDLLRIALMA 574
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query876
3pfy_A185 OTU domain-containing protein 5; structural genomi 99.78
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 99.7
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.6
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.59
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 99.24
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 98.92
4dhi_B284 Ubiquitin thioesterase otubain-like; ubiquitin E2 98.84
3dkb_A390 Tumor necrosis factor, alpha-induced protein 3; OT 98.68
4ddg_A399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 98.6
3zrh_A454 Ubiquitin thioesterase zranb1; hydrolase, deubiqui 98.43
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 95.8
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 95.02
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 88.84
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Back     alignment and structure
Probab=99.78  E-value=8.4e-20  Score=177.76  Aligned_cols=127  Identities=14%  Similarity=0.127  Sum_probs=94.0

Q ss_pred             ccccccccccccCCCCcchhhHHhhhccCCchHHHHHHHHHHHHHhhhhhhhhhhcCHHHHHHHHhhcCCCCCCCCcccc
Q 002828          695 LRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHR  774 (876)
Q Consensus       695 l~~~~~~~~~v~~dg~Cgfraia~~l~~~~~~~~~vR~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~w  774 (876)
                      ++...+.+++|+|||||+|||||++|..+++.|..||+.++++|+++++.|.+++.  +.|++|+..|.      .++.|
T Consensus        54 ~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~--~~~e~Y~~~m~------~~~~W  125 (185)
T 3pfy_A           54 RDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT--EDFTTYINRKR------KNNCH  125 (185)
T ss_dssp             HHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------------
T ss_pred             HHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHhh------CCCcc
Confidence            36788999999999999999999999999999999999999999999999999985  46999999986      67789


Q ss_pred             cccCCchhhhhcccceeEEEEccCcc-eeeccCccCCCCCCCCceEEEEEecCCceEEeec
Q 002828          775 MIMPDTGHLIASRYNIVLMHLSQQQC-FTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVFM  834 (876)
Q Consensus       775 ~~~~~~g~~iA~~~~~~v~~~~~~~~-~~~~p~~~~p~~~~~~~~i~l~~~~~~Hf~~~~~  834 (876)
                      ++.+++ .++|..|+++|++++...+ ...|+-    ......+||+|+|++++||+||.-
T Consensus       126 Gg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g----~~~~~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          126 GNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHG----IHQNEDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECT----TSCCTTSCEEEEEETTTEEEEEEC
T ss_pred             chHHHH-HHHHHhhCCcEEEEECCCCCeEEecC----ccCCCCCEEEEEECCCCCcccccC
Confidence            999987 5999999999999987532 222221    122236889999999999999864
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Back     alignment and structure
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Back     alignment and structure
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Back     alignment and structure
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Back     alignment and structure
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Back     alignment and structure
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query876
d1tffa_228 Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 99.01
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 96.01
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.2e-10  Score=114.77  Aligned_cols=97  Identities=8%  Similarity=0.046  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcCHHHHHHHHhh-cCCCCCCCCcccccccCCchhhhhcccceeEEEEccCcceeeccCcc
Q 002828          730 VRRDLVDELQSHYDDYIQLYGDAEIARELLHS-LSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRS  808 (876)
Q Consensus       730 vR~~l~~el~~~~~~y~~~~~~~~~~~~~~~~-l~~~~~~~~~~~w~~~~~~g~~iA~~~~~~v~~~~~~~~~~~~p~~~  808 (876)
                      +|......++.+++.|.+++.++..+++++.. +.      +.+.|.+...+ .++|.+|++||.++.......-++...
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~------~~~~e~d~ieI-~aLa~al~v~I~V~~~d~~~~~~~~~~  201 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALNHHV  201 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------CCC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHc------cccccCCcHHH-HHHHHHhCCCEEEEEecCCCCcccccc
Confidence            58888889999999999998776677777764 65      66789998887 599999999999987654444344333


Q ss_pred             CCCCCCCCceEEEEEecCCceEEeeccC
Q 002828          809 VPLPRTSRKIVTIGFVNECQFVKVFMHP  836 (876)
Q Consensus       809 ~p~~~~~~~~i~l~~~~~~Hf~~~~~~~  836 (876)
                      -|.+  ..++|+|.|- +.||+.||..+
T Consensus       202 ~~~~--~~~~I~Lly~-pgHYdiLY~~~  226 (228)
T d1tffa_         202 FPEA--ATPSVYLLYK-TSHYNILYAAD  226 (228)
T ss_dssp             CCCC--SSCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCC--CCCEEEEEeC-CCCcccCccCC
Confidence            3333  3678999996 67999998754
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure