Citrus Sinensis ID: 002834

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-----
MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI
cccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHcHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccCEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccCEEHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHcHHHcccccccccHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccc
MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI
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MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Putative pentatricopeptide repeat-containing protein At5g08490 probableQ9FNN9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 74-226
View the alignment between query and template
View the model in PyMOL
Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 624-749
View the alignment between query and template
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Template: 2XPI, chain A
Confidence level:confident
Coverage over the Query: 107-450,490-528,560-591,655-738
View the alignment between query and template
View the model in PyMOL
Template: 2XPI, chain A
Confidence level:confident
Coverage over the Query: 315-803
View the alignment between query and template
View the model in PyMOL
Template: 2OOE, chain A
Confidence level:confident
Coverage over the Query: 391-549,567-822
View the alignment between query and template
View the model in PyMOL
Template: 3IEG, chain A
Confidence level:confident
Coverage over the Query: 524-822,849-868
View the alignment between query and template
View the model in PyMOL
Template: 4G26, chain A
Confidence level:confident
Coverage over the Query: 42-97,120-260
View the alignment between query and template
View the model in PyMOL
Template: 1WAO, chain 1
Confidence level:probable
Coverage over the Query: 663-860
View the alignment between query and template
View the model in PyMOL