Citrus Sinensis ID: 002834
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 875 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNN9 | 849 | Putative pentatricopeptid | yes | no | 0.945 | 0.974 | 0.553 | 0.0 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.92 | 0.838 | 0.318 | 1e-123 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.8 | 0.786 | 0.321 | 1e-119 | |
| Q7XJN6 | 860 | Pentatricopeptide repeat- | no | no | 0.925 | 0.941 | 0.312 | 1e-117 | |
| Q9FM64 | 830 | Pentatricopeptide repeat- | no | no | 0.893 | 0.942 | 0.310 | 1e-117 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.888 | 0.801 | 0.299 | 1e-117 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.888 | 0.906 | 0.305 | 1e-115 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.76 | 0.763 | 0.328 | 1e-112 | |
| Q9LIE7 | 820 | Pentatricopeptide repeat- | no | no | 0.830 | 0.886 | 0.308 | 1e-112 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.689 | 0.865 | 0.335 | 1e-111 |
| >sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/830 (55%), Positives = 617/830 (74%), Gaps = 3/830 (0%)
Query: 42 NHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLF 101
+H++F V+K+C S++D+ G+ALHG V KLGHI+C VSK++LN+YAKC +DDC K+F
Sbjct: 20 DHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMF 79
Query: 102 GQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161
Q+D+ DPV WNI+L+G + S M F MH D+PKP+SVT AIVL C RLG
Sbjct: 80 RQMDSLDPVVWNIVLTGLSVSC--GRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGD 137
Query: 162 IFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVH-DAYSVFDSIEDKDVVSWNAVIS 220
+ GKS+H+Y+IK GLE+ TLVGN+L SMYAK G + DAY+ FD I DKDVVSWNA+I+
Sbjct: 138 SYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIA 197
Query: 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRA 280
G SEN ++ DAFR F ML EP +PNYATI N+LP+CAS+D+++ GR+IH YV++R+
Sbjct: 198 GFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRS 257
Query: 281 ELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLF 340
L V VCN+LVSFYLR GR EEA LF RM S+DLVSWN +IAGYASN EW KA LF
Sbjct: 258 WLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLF 317
Query: 341 CELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYA 400
L+ K + PDSVT++S+LP CA L +L GKEIH Y LRH YL ED +VGNAL+SFYA
Sbjct: 318 HNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYA 377
Query: 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460
+ D AAY F ++ +D+ISWN++LDAF++S QFLNLL+ +L E I DS+TIL+
Sbjct: 378 RFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILS 437
Query: 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520
++ FC V G VKE HGY +K GLL + E +GNA+LDAYAKC N++YA +F L
Sbjct: 438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLS 497
Query: 521 EKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFL 580
E+R LV++N ++SGY N GS D+A M F+ + DLT W+LM+R+YAE+ PN+A+ +F
Sbjct: 498 ERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFR 557
Query: 581 KLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640
++QA+GM+P+ VTIM+LLPVC+Q+AS+HL+RQCHGY+IR +RL G LL +YAKCGS
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLGDIRLKGTLLDVYAKCGS 617
Query: 641 IFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700
+ A +FQ ++D+VM TAM+ GYA+HG GK AL ++S M E + PDHV IT +L+A
Sbjct: 618 LKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTA 677
Query: 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCN 760
C HAGL+ +GL+I+ SI V G+KPT EQYA VDL+ARGG++ DAYS V +MPVE + N
Sbjct: 678 CCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNAN 737
Query: 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820
+WGTLL AC ++ ++LG VAN L + E+D+ GN+V++SN+YAADA+W+GV+E+R LMK
Sbjct: 738 IWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMK 797
Query: 821 TRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQV 870
+++KKPA CSW+EV+ + N F++GD SHPRRD I+ +++ L Q+K+ V
Sbjct: 798 KKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMKEPV 847
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/858 (31%), Positives = 452/858 (52%), Gaps = 53/858 (6%)
Query: 17 CRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTK-LGHI 75
C DG+ EA +SP + F+ VL+ C + G+ LH + K
Sbjct: 59 CFDGVLTEAFQRLDVSENNSPV-----EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSF 113
Query: 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYN 135
++ L+ +Y KCG +DD K+F ++ + WN ++ + S+ + A + L++N
Sbjct: 114 ELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV-SNGEPASALALYWN 172
Query: 136 MHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRG 195
M V P S A+ L ACA+L I +G LH+ ++K G + N+L SMYAK
Sbjct: 173 MRVEGVPLGLSSFPAL-LKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND 231
Query: 196 LVHDAYSVFDSIEDK-DVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNIL 254
+ A +FD ++K D V WN+++S S + + LF M PN TI++ L
Sbjct: 232 DLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSAL 291
Query: 255 PICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS 314
C G+EIH VL+ + +++ VCNAL++ Y R G+ +AE + R+M +
Sbjct: 292 TACDGFSYAK---LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNN 348
Query: 315 RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKE 374
D+V+WN++I GY N + +AL F ++I D V++ S++ A L NL G E
Sbjct: 349 ADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHK-SDEVSMTSIIAASGRLSNLLAGME 407
Query: 375 IHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESG 434
+H Y ++H + + + VGN L+ Y+KC+ R FL + +DLISW +++ ++++
Sbjct: 408 LHAYVIKHGW-DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQND 466
Query: 435 YNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHN 494
+ + L L + + + D + + +I+ + + +VKE H ++++ GLL DT
Sbjct: 467 CHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL--DTV-- 522
Query: 495 IGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYAR 554
I N ++D Y KCRN+ YA VF+S ++ +++V++ +IS A G+ E
Sbjct: 523 IQNELVDVYGKCRNMGYATRVFES-IKGKDVVSWTSMISSSALNGNESE----------- 570
Query: 555 DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCH 614
A+ LF ++ G+ D+V ++ +L + +++++ R+ H
Sbjct: 571 --------------------AVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIH 610
Query: 615 GYVIRA--CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMG 672
Y++R C +G + A++ +YA CG + SA +F +K ++ T+MI Y MHG G
Sbjct: 611 CYLLRKGFCLEG-SIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 669
Query: 673 KAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYAS 732
KAA+++F M V+PDH+ A+L ACSHAGL+DEG + +E ++P PE Y
Sbjct: 670 KAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVC 729
Query: 733 LVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792
LVD+L R + +A+ V M E VW LL ACR H E E+G + A RL E+E N
Sbjct: 730 LVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKN 789
Query: 793 IGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRR 852
GN V++SN++A RW+ V ++R MK ++K CSWIE++ K + F A D SHP
Sbjct: 790 PGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPES 849
Query: 853 DMIYWVLSILDEQIKDQV 870
IY LS + +++ +V
Sbjct: 850 KEIYEKLSEVTRKLEREV 867
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/731 (32%), Positives = 411/731 (56%), Gaps = 31/731 (4%)
Query: 143 KPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTL-VGNSLTSMYAKRGLVHDAY 201
KP++ +L A A L + GK +HA+V KFG ++ V N+L ++Y K G Y
Sbjct: 94 KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153
Query: 202 SVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLD 261
VFD I +++ VSWN++IS L + A F ML E ++P+ T+++++ C++L
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213
Query: 262 EDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWN 321
G G+++H Y LR+ EL + + N LV+ Y + G+ +++L RDLV+WN
Sbjct: 214 MPEGLMMGKQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 322 AIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLR 381
+++ N++ L+AL E++ E + PD T+ S+LPAC++L+ L+ GKE+H Y L+
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVL-EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330
Query: 382 HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLN 441
+ L+E++ VG+ALV Y C + + R F + R + WN+M+ +S++ ++ + L
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390
Query: 442 LLNCMLME-GIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAIL 500
L M G+ +S T+ ++ C + HG+++K GL D + + N ++
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGL---DRDRFVQNTLM 447
Query: 501 DAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWN 560
D Y++ I A +F +E R+LVT+N +I+GY ++A + ++ +
Sbjct: 448 DMYSRLGKIDIAMRIFGK-MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA 620
RV +KP+++T+M++LP C+ ++++ ++ H Y I+
Sbjct: 507 GASRV--------------------SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN 546
Query: 621 CF-DGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVF 679
V + AL+ +YAKCG + + K+F PQK+V+ +I Y MHG G+ A+ +
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLL 606
Query: 680 SDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR 739
M+ GV P+ V +V +ACSH+G+VDEGL IF ++ G++P+ + YA +VDLL R
Sbjct: 607 RMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGR 666
Query: 740 GGQISDAYSLVNRMPVEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVV 798
G+I +AY L+N MP + + W +LLGA RIH+ +E+G + A L ++E + +YV+
Sbjct: 667 AGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVL 726
Query: 799 MSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWV 858
++N+Y++ WD E+R+ MK + ++K CSWIE + + F+AGD SHP+ + +
Sbjct: 727 LANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGY 786
Query: 859 LSILDEQIKDQ 869
L L E+++ +
Sbjct: 787 LETLWERMRKE 797
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 273/873 (31%), Positives = 445/873 (50%), Gaps = 63/873 (7%)
Query: 13 INGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKL 72
I + G + +AL L++ SSP + F ++LK+C++L ++ GK +HG V L
Sbjct: 31 IRALIQKGEYLQALHLYSKHDGSSP-FWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVL 89
Query: 73 GHISCQAVSKALLNLYAKCGVIDDCYKLF-------GQVDNTDPVTWNILLSG-FACSHV 124
G ++ +L+N+Y KCG +D ++F V D WN ++ G F
Sbjct: 90 GWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRF 149
Query: 125 DDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIF--AGKSLHAYVIKFGLERHTL 182
+ + F M V +P++ +++IV+S + G GK +H ++++ L+ +
Sbjct: 150 KEG--VGCFRRMLVFG-VRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSF 206
Query: 183 VGNSLTSMYAKRGLVHDAYSVFDSIEDK-DVVSWNAVISGLSENKVLGDAFRLFSWMLTE 241
+ +L MY K GL DA+ VF IEDK +VV WN +I G + + + L+
Sbjct: 207 LKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNN 266
Query: 242 PIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGR 301
+K + L C S E+ G FGR+IHC V++ L D VC +L+S Y + G
Sbjct: 267 SVKLVSTSFTGALGAC-SQSENSG--FGRQIHCDVVKMG-LHNDPYVCTSLLSMYSKCGM 322
Query: 302 TEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361
EAE +F + + L WNA++A YA ND AL+LF + ++ + PDS TL +++
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLF-GFMRQKSVLPDSFTLSNVIS 381
Query: 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLI 421
C+ L GK +H + P ++ + + +AL++ Y+KC AY F + +D++
Sbjct: 382 CCSVLGLYNYGKSVHAELFKRP-IQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMV 440
Query: 422 SWNSMLDAFSESGYNSQFLNLLNCMLME--GIRPDSITILTIIHFCTTV--LREGMVKET 477
+W S++ ++G + L + M + ++PDS + ++ + C + LR G+ +
Sbjct: 441 AWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGL--QV 498
Query: 478 HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN 537
HG +IKTGL+L +G++++D Y+KC
Sbjct: 499 HGSMIKTGLVLNVF---VGSSLIDLYSKC------------------------------- 524
Query: 538 CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSL 597
G + A F+ + ++ WN MI Y+ N+ P ++ LF + +QG+ PD+V+I S+
Sbjct: 525 -GLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSV 583
Query: 598 LPVCSQMASVHLLRQCHGYVIRACFDG-VRLNGALLHLYAKCGSIFSASKIFQCHPQKDV 656
L S AS+ + HGY +R L AL+ +Y KCG A IF+ K +
Sbjct: 584 LVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSL 643
Query: 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRS 716
+ MI GY HG AL +F +M + G +PD V +++SAC+H+G V+EG IF
Sbjct: 644 ITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEF 703
Query: 717 IEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVE 776
+++ GI+P E YA++VDLL R G + +AYS + MP+EAD ++W LL A R HH VE
Sbjct: 704 MKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVE 763
Query: 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVE 836
LG + A +L ME + YV + NLY + ++ LMK + L K CSWIEV
Sbjct: 764 LGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVS 823
Query: 837 RKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQ 869
+ N F +G S P + I+ VL+ L + D+
Sbjct: 824 DRTNVFFSGGSSSPMKAEIFNVLNRLKSNMVDE 856
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/866 (31%), Positives = 442/866 (51%), Gaps = 84/866 (9%)
Query: 4 PNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGK 63
P++ S+ ++ C++G KEALSL ++R +++ +L+ C D+ GK
Sbjct: 33 PSSTSYFHRVSSLCKNGEIKEALSLVTE--MDFRNLRIGPEIYGEILQGCVYERDLSTGK 90
Query: 64 ALHGYVTKLG--HISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFAC 121
+H + K G + + + L+ YAKC ++ LF ++ + +W ++ G C
Sbjct: 91 QIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAII-GVKC 149
Query: 122 SHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHT 181
+ F M + ++ P++ V V AC L G+ +H YV+K GLE
Sbjct: 150 RIGLCEGALMGFVEM-LENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCV 208
Query: 182 LVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTE 241
V +SL MY K G++ DA VFD I D++ V+WNA++ G +N +A RLFS M +
Sbjct: 209 FVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ 268
Query: 242 PIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGR 301
++P T+ L A++ G G++ H + + ++ + +L++FY + G
Sbjct: 269 GVEPTRVTVSTCLSASANMG---GVEEGKQSHAIAIVNGMELDNI-LGTSLLNFYCKVGL 324
Query: 302 TEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361
E AE++F RM +D+V+WN II+GY A+ + C+L+ E + D VTL +L+
Sbjct: 325 IEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYM-CQLMRLEKLKYDCVTLATLMS 383
Query: 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLI 421
A A +NLK+GKE+ Y +RH + E D + + ++ YAKC + A + F +DLI
Sbjct: 384 AAARTENLKLGKEVQCYCIRHSF-ESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLI 442
Query: 422 SWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYL 481
WN++L A++ESG + + L L M +EG+ P+ IT II ++LR G V E
Sbjct: 443 LWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII---LSLLRNGQVDEA---- 495
Query: 482 IKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSA 541
K F QS NL+++ +++G G +
Sbjct: 496 ----------------------------KDMFLQMQSSGIIPNLISWTTMMNGMVQNGCS 527
Query: 542 DEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFL-KLQAQGMKPDAVTIMSLLPV 600
+EA LFL K+Q G++P+A +I L
Sbjct: 528 EEAI--------------------------------LFLRKMQESGLRPNAFSITVALSA 555
Query: 601 CSQMASVHLLRQCHGYVIRACFDG--VRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVM 658
C+ +AS+H+ R HGY+IR V + +L+ +YAKCG I A K+F ++ +
Sbjct: 556 CAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPL 615
Query: 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIE 718
AMI YA++G K A+ ++ + +G+ PD++ IT VLSAC+HAG +++ +EIF I
Sbjct: 616 SNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIV 675
Query: 719 KVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELG 778
+ +KP E Y +VDLLA G+ A L+ MP + D + +L+ +C + EL
Sbjct: 676 SKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELV 735
Query: 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEV--E 836
++ +L E E +N GNYV +SN YA + WD VV++R++MK + LKK CSWI++ E
Sbjct: 736 DYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGE 795
Query: 837 RKNNAFMAGDYSHPRRDMIYWVLSIL 862
+ F+A D +H R + I +L++L
Sbjct: 796 EGVHVFVANDKTHTRINEIQMMLALL 821
|
Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/826 (29%), Positives = 434/826 (52%), Gaps = 49/826 (5%)
Query: 49 VLKSCTSLADILLGKALHGYVTKLGHISCQAV-SKALLNLYAKCGVIDDCYKLFGQVDNT 107
+L++ DI +G+ +H V+ + V ++ +YA CG DD +F + +
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149
Query: 108 DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKS 167
+ WN ++S ++ + + D V+ F M P+ T V+ ACA + + G +
Sbjct: 150 NLFQWNAVISSYSRNELYD-EVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208
Query: 168 LHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKV 227
+H V+K GL VGN+L S Y G V DA +FD + ++++VSWN++I S+N
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 228 LGDAFRLFSWMLTE----PIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELI 283
++F L M+ E P+ AT++ +LP+CA + ++G G+ +H + + + L
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR-EREIG--LGKGVHGWAV-KLRLD 324
Query: 284 ADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCEL 343
++ + NAL+ Y + G A+++F+ ++++VSWN ++ G+++ + ++ ++
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384
Query: 344 IT-KEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC 402
+ E + D VT+++ +P C + L KE+H Y L+ ++ + V NA V+ YAKC
Sbjct: 385 LAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE-LVANAFVASYAKC 443
Query: 403 SDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTII 462
+ A R F I + + SWN+++ ++S L+ M + G+ PDS T+ +++
Sbjct: 444 GSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLL 503
Query: 463 HFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK 522
C+ + + KE HG++I+ L +
Sbjct: 504 SACSKLKSLRLGKEVHGFIIRNWL-----------------------------------E 528
Query: 523 RNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKL 582
R+L + V+S Y +CG F + + L WN +I Y +N FP++AL +F ++
Sbjct: 529 RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 588
Query: 583 QAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACF-DGVRLNGALLHLYAKCGSI 641
G++ +++M + CS + S+ L R+ H Y ++ D + +L+ +YAK GSI
Sbjct: 589 VLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSI 648
Query: 642 FSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701
+SK+F +K AMI GY +HG+ K A+K+F +M G NPD + VL+AC
Sbjct: 649 TQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708
Query: 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLV-NRMPVEADCN 760
+H+GL+ EGL ++ G+KP + YA ++D+L R GQ+ A +V M EAD
Sbjct: 709 NHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 768
Query: 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820
+W +LL +CRIH +E+G VA +LFE+E + NYV++SNLYA +W+ V ++R+ M
Sbjct: 769 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMN 828
Query: 821 TRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQI 866
L+K A CSWIE+ RK +F+ G+ + I + SIL+ +I
Sbjct: 829 EMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKI 874
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/828 (30%), Positives = 434/828 (52%), Gaps = 51/828 (6%)
Query: 46 FSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVS-KALLNLYAKCGVIDDCYKLFGQV 104
S +L++C++ + GK +H ++ + IS + + + +L +YA CG DC K+F ++
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLI-VNSISGDSYTDERILGMYAMCGSFSDCGKMFYRL 96
Query: 105 D--NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGI 162
D + WN ++S F + + + + FY + P+ T ++ AC L
Sbjct: 97 DLRRSSIRPWNSIISSFVRNGLLNQALA--FYFKMLCFGVSPDVSTFPCLVKACVALKNF 154
Query: 163 FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGL 222
L V G++ + V +SL Y + G + +FD + KD V WN +++G
Sbjct: 155 KGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGY 214
Query: 223 SENKVLGDAFRLFSWMLTEPIKPNYATILNILPICAS-LDEDVGYFFGREIHCYVLRRAE 281
++ L + FS M + I PN T +L +CAS L D+G ++H V+
Sbjct: 215 AKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV----QLHGLVVVSG- 269
Query: 282 LIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFC 341
+ + S+ N+L+S Y + GR ++A LFR M D V+WN +I+GY + ++L F
Sbjct: 270 VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFY 329
Query: 342 ELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAK 401
E+I+ ++ PD++T SLLP+ + +NL+ K+IH Y +RH + D + +AL+ Y K
Sbjct: 330 EMISSGVL-PDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS-ISLDIFLTSALIDAYFK 387
Query: 402 CSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTI 461
C + A F D++ + +M+ + +G L + ++ I P+ IT+++I
Sbjct: 388 CRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSI 447
Query: 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521
+ +L + +E HG++IK G D NIG A++D YAK
Sbjct: 448 LPVIGILLALKLGRELHGFIIKKGF---DNRCNIGCAVIDMYAK---------------- 488
Query: 522 KRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLK 581
CG + A+ F R+ RD+ WN MI A++D P+ A+ +F +
Sbjct: 489 ----------------CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQ 532
Query: 582 LQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACF-DGVRLNGALLHLYAKCGS 640
+ G+ D V+I + L C+ + S + HG++I+ V L+ +YAKCG+
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGN 592
Query: 641 IFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL-GVNPDHVVITAVLS 699
+ +A +F+ +K++V ++I HG K +L +F +M+E G+ PD + ++S
Sbjct: 593 LKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652
Query: 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADC 759
+C H G VDEG+ FRS+ + GI+P E YA +VDL R G++++AY V MP D
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Query: 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819
VWGTLLGACR+H VEL V +++L +++ N G YV++SN +A W+ V ++R LM
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLM 772
Query: 820 KTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIK 867
K R+++K SWIE+ ++ + F++GD +HP IY +L+ L +++
Sbjct: 773 KEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELR 820
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/712 (32%), Positives = 384/712 (53%), Gaps = 47/712 (6%)
Query: 148 TVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSI 207
T+ VL CA + GK + ++ G + +G+ L+ MY G + +A VFD +
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 208 EDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYF 267
+ + + WN +++ L+++ + LF M++ ++ + T + +SL G
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG-- 213
Query: 268 FGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGY 327
G ++H ++L+ SV N+LV+FYL+ R + A +F M RD++SWN+II GY
Sbjct: 214 -GEQLHGFILKSG-FGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271
Query: 328 ASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEE 387
SN K L++F +++ I D T+VS+ CA + + +G+ +H ++ + E
Sbjct: 272 VSNGLAEKGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330
Query: 388 DAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCML 447
D N L+ Y+KC D+++A F + R ++S+ SM+ ++ G + + L M
Sbjct: 331 DRFC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389
Query: 448 MEGIRPDSITILTIIHFCTT--VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505
EGI PD T+ +++ C +L EG K H ++ E+++G
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEG--KRVHEWI---------KENDLG--------- 429
Query: 506 CRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRV 565
F++F S N ++ YA CGS EA + FS + +D+ WN +I
Sbjct: 430 -------FDIFVS----------NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472
Query: 566 YAENDFPNQALSLF-LKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIR-ACFD 623
Y++N + N+ALSLF L L+ + PD T+ +LP C+ +++ R+ HGY++R F
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532
Query: 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683
+ +L+ +YAKCG++ A +F KD+V T MI GY MHG GK A+ +F+ M
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592
Query: 684 ELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI 743
+ G+ D + ++L ACSH+GLVDEG F + I+PT E YA +VD+LAR G +
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652
Query: 744 SDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803
AY + MP+ D +WG LL CRIHH+V+L VA ++FE+E +N G YV+M+N+Y
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIY 712
Query: 804 AADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMI 855
A +W+ V +RK + R L+K CSWIE++ + N F+AGD S+P + I
Sbjct: 713 AEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 242/784 (30%), Positives = 413/784 (52%), Gaps = 57/784 (7%)
Query: 99 KLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPN--SVTVAIVLSAC 156
+LF + V WN ++ GF C+++ + LFY+ + P N + T + L AC
Sbjct: 60 QLFDAIPKPTTVLWNTIIIGFICNNLPHEAL--LFYSRMKKTAPFTNCDAYTYSSTLKAC 117
Query: 157 ARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYS------VFDSIEDK 210
A + AGK++H ++I+ +V NSL +MY D + VFD++ K
Sbjct: 118 AETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRK 177
Query: 211 DVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILP---ICASLDEDVGYF 267
+VV+WN +IS + +A R F M+ +KP+ + +N+ P I S+ + F
Sbjct: 178 NVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK-ANVF 236
Query: 268 FGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGY 327
+G + E + D+ V ++ +S Y G E + +F R++ WN +I Y
Sbjct: 237 YGLMLKL----GDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVY 292
Query: 328 ASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEE 387
ND ++++ LF E I + I D VT + A + L+ +++G++ HG F+ + E
Sbjct: 293 VQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHG-FVSKNFREL 351
Query: 388 DAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCML 447
+ N+L+ Y++C + ++ FL + RD++SWN+M+ AF ++G + + L L+ M
Sbjct: 352 PIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 411
Query: 448 MEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507
+G + D IT+ ++ + + + + K+TH +LI+ G+ + + ++D Y+K
Sbjct: 412 KQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQF----EGMNSYLIDMYSKSG 467
Query: 508 NIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYA 567
I+ + +F+ SGYA RD WN MI Y
Sbjct: 468 LIRISQKLFEG--------------SGYAE----------------RDQATWNSMISGYT 497
Query: 568 ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVR 626
+N + +F K+ Q ++P+AVT+ S+LP CSQ+ SV L +Q HG+ IR D V
Sbjct: 498 QNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVF 557
Query: 627 LNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG 686
+ AL+ +Y+K G+I A +F +++ V T MI GY HGMG+ A+ +F M E G
Sbjct: 558 VASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESG 617
Query: 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746
+ PD + AVLSACS++GL+DEGL+IF + +V I+P+ E Y + D+L R G++++A
Sbjct: 618 IKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEA 677
Query: 747 YSLVNRMPVEAD-CNVWGTLLGACRIHHEVELGRVVANRL--FEMEADNIGNYVVMSNLY 803
Y V + E + +WG+LLG+C++H E+EL V+ RL F+ + G V++SN+Y
Sbjct: 678 YEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMY 737
Query: 804 AADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILD 863
A + +W V ++R+ M+ + LKK S IE+ N F++ D HP IY V+ L
Sbjct: 738 AEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLA 797
Query: 864 EQIK 867
+ ++
Sbjct: 798 KDMR 801
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/626 (33%), Positives = 358/626 (57%), Gaps = 23/626 (3%)
Query: 257 CASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRD 316
C SL++ GR++ + +R ++ N++V+ + G +EA+ LFR M RD
Sbjct: 68 CGSLED------GRQVFDKMPQR-----NIYTWNSVVTGLTKLGFLDEADSLFRSMPERD 116
Query: 317 LVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIH 376
+WN++++G+A +D +AL F ++ KE + + S+L AC+ L ++ G ++H
Sbjct: 117 QCTWNSMVSGFAQHDRCEEALCYFA-MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH 175
Query: 377 GYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYN 436
+ P+L D +G+ALV Y+KC ++ A R F + R+++SWNS++ F ++G
Sbjct: 176 SLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA 234
Query: 437 SQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIG 496
+ L++ ML + PD +T+ ++I C ++ + +E HG ++K L D +
Sbjct: 235 VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDI--ILS 292
Query: 497 NAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDL 556
NA +D YAKC IK A +F S+ RN++ +ISGYA S A + F+++ R++
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSM-PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV 351
Query: 557 TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGY 616
WN +I Y +N +ALSLF L+ + + P + ++L C+ +A +HL Q H +
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 617 VIRACF-------DGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMH 669
V++ F D + + +L+ +Y KCG + +F+ ++D V AMI G+A +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 670 GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ 729
G G AL++F +MLE G PDH+ + VLSAC HAG V+EG F S+ + G+ P +
Sbjct: 472 GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531
Query: 730 YASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789
Y +VDLL R G + +A S++ MP++ D +WG+LL AC++H + LG+ VA +L E+E
Sbjct: 532 YTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVE 591
Query: 790 ADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSH 849
N G YV++SN+YA +W+ V+ +RK M+ + K CSWI+++ ++ FM D SH
Sbjct: 592 PSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSH 651
Query: 850 PRRDMIYWVLSILDEQIKDQVTISEI 875
PR+ I+ +L IL +++ + +EI
Sbjct: 652 PRKKQIHSLLDILIAEMRPEQDHTEI 677
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 875 | ||||||
| 225463207 | 868 | PREDICTED: putative pentatricopeptide re | 0.966 | 0.974 | 0.661 | 0.0 | |
| 224080081 | 870 | predicted protein [Populus trichocarpa] | 0.947 | 0.952 | 0.663 | 0.0 | |
| 147765658 | 1849 | hypothetical protein VITISV_043511 [Viti | 0.946 | 0.447 | 0.657 | 0.0 | |
| 357464861 | 867 | hypothetical protein MTR_3g098230 [Medic | 0.984 | 0.993 | 0.619 | 0.0 | |
| 356518834 | 875 | PREDICTED: putative pentatricopeptide re | 0.987 | 0.987 | 0.621 | 0.0 | |
| 296084817 | 807 | unnamed protein product [Vitis vinifera] | 0.901 | 0.977 | 0.673 | 0.0 | |
| 449469206 | 873 | PREDICTED: putative pentatricopeptide re | 0.988 | 0.990 | 0.572 | 0.0 | |
| 297810955 | 849 | pentatricopeptide repeat-containing prot | 0.945 | 0.974 | 0.556 | 0.0 | |
| 15241649 | 849 | pentatricopeptide repeat-containing prot | 0.945 | 0.974 | 0.553 | 0.0 | |
| 449484874 | 881 | PREDICTED: putative pentatricopeptide re | 0.921 | 0.914 | 0.573 | 0.0 |
| >gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/848 (66%), Positives = 676/848 (79%), Gaps = 2/848 (0%)
Query: 22 HKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVS 81
H EALSLF ++ S + N Q+ +A+LKSC +++ I G LHGY KLGH+SCQ++
Sbjct: 18 HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC 77
Query: 82 KALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQ 141
K LLNLYAK G +D C KLFG++D DPV WNI+LSG A +A VM LF MH+ ++
Sbjct: 78 KGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNE 137
Query: 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV-HDA 200
KPNSVT+AIVL CARL AGKS+H+YVIK GLE HTL GN+L SMYAK GLV DA
Sbjct: 138 AKPNSVTIAIVLPVCARLRED-AGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDA 196
Query: 201 YSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260
Y+ F+ IE KDVVSWNAVI+G SENK +AF+LF ML PI+PNYATI +ILP+CASL
Sbjct: 197 YAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASL 256
Query: 261 DEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSW 320
+E+ GY +G+E+HC+VLRR EL+ DVSV N+L+SFYLR G+ E+AE LFR MKSRDLVSW
Sbjct: 257 EENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSW 316
Query: 321 NAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFL 380
NAIIAGYASN EWLKAL LF E I+ E I PDSVTLVS+LPACA++ NL+V K IHGY +
Sbjct: 317 NAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYII 376
Query: 381 RHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFL 440
RHP L ED +VGNAL+SFYAKC+ +AA +TFLMI R+DLISWN++LDAF+ESG + +
Sbjct: 377 RHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLV 436
Query: 441 NLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAIL 500
NLL+ ML EGIRPDSITILTII + V R VKETH Y I+ GLL GD +GN +L
Sbjct: 437 NLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGML 496
Query: 501 DAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWN 560
DAYAKC N+KYA N+F SL EKRN+VT N +ISGY N S D+A+ F+ + DLT WN
Sbjct: 497 DAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWN 556
Query: 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA 620
LM+RVYAENDFP+QALSLF +LQ QGMKPD VTIMS+LP C+ MASVH+LRQCHGYVIRA
Sbjct: 557 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRA 616
Query: 621 CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFS 680
CF+ VRLNGA + +Y+KCGS+F A K+F PQKD+VM TAM+GG+AMHGMG+ AL++FS
Sbjct: 617 CFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFS 676
Query: 681 DMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG 740
MLELGV PDHV+ITAVL ACSHAGLVDEG +IF SIEKV G +PT EQYA +VDLLARG
Sbjct: 677 YMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARG 736
Query: 741 GQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800
G+I DAY+ V RMP+EA+ N+WGTLLGACR HHEVELGRVVA+ LF++E+DNIGNYVVMS
Sbjct: 737 GRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMS 796
Query: 801 NLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLS 860
NLYAADARWDGV+EIR+LM+TR+LKKPA CSWIEV R+ N F+AGD SHP+R +IY LS
Sbjct: 797 NLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLS 856
Query: 861 ILDEQIKD 868
LD+ +K+
Sbjct: 857 TLDQLMKE 864
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa] gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/835 (66%), Positives = 662/835 (79%), Gaps = 6/835 (0%)
Query: 40 RHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYK 99
R ++Q +++LKSC L+ I G+ALHG + ++GH+SC AVSKALLN+YAKCG +D+ K
Sbjct: 21 RQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKK 80
Query: 100 LFGQV---DNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSAC 156
LFG++ ++ DP+ WNILLSG+A S V DA + LF MH + PKP+SVT AIVL C
Sbjct: 81 LFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVC 140
Query: 157 ARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV-HDAYSVFDSIEDKDVVSW 215
ARLG ++ G+S++ Y IK GL+ HTL GN+L SMYAK GLV DAY+ FDSI++KDVVSW
Sbjct: 141 ARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSW 200
Query: 216 NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCY 275
NA+ISG +EN ++ DAFRLFS ML IKPNY T+ NILP+CAS DE + Y+FG+EIH Y
Sbjct: 201 NAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGY 260
Query: 276 VLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLK 335
VLR EL+ADV V NALVSFYLR GR EEAELLFRRM+ RDLVSWNAIIAGYASN EW K
Sbjct: 261 VLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSK 320
Query: 336 ALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNAL 395
AL LF EL+T +MI PDSVTL+ ++PACA +NL VGK IHGY LRHP L ED +VGNAL
Sbjct: 321 ALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNAL 380
Query: 396 VSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS 455
VSFYAKC D+E AY TF MI RRDLISWNSMLDA ESGYN+ FL LL ML EG PDS
Sbjct: 381 VSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDS 440
Query: 456 ITILTIIHFCTTVLREGMVKETHGYLIKTGLLLG--DTEHNIGNAILDAYAKCRNIKYAF 513
+TIL+++HFC VL+E VKE H Y I+ LL D E IGNAILDAYAKC NI+YA
Sbjct: 441 VTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYAS 500
Query: 514 NVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573
VFQSL E RNLVTF +ISGY NCG DEA++TF+R+ + DL+ WNLM+R+YAEND +
Sbjct: 501 KVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSS 560
Query: 574 QALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLH 633
QAL LF +LQA G+KPDAVTIMSLLP C++MASV L++QCHGY IR+CF + L+GAL
Sbjct: 561 QALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCFGDLHLDGALQD 620
Query: 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV 693
+YAKCGSI A K+FQ P KD+++ TAMI GYAMHGMGK AL F M+ELG+ PDHV+
Sbjct: 621 VYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVI 680
Query: 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753
IT VLSACSHAGLVDEGL IF SIEKV G+K T EQY+ +VDLLARGG+I DA+S+V M
Sbjct: 681 ITTVLSACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGM 740
Query: 754 PVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813
P+EA+ N+WGTLLGACR HHEVELGR VA+RLF++EA+NIGNYVV+SNLYAADARWDGV+
Sbjct: 741 PIEANANIWGTLLGACRTHHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVM 800
Query: 814 EIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868
EIRKLM+TRDLKKPA CSWIEVER+ N F+AGD SHP R IY +LS L+ QIK+
Sbjct: 801 EIRKLMRTRDLKKPAGCSWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIKE 855
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/832 (65%), Positives = 658/832 (79%), Gaps = 4/832 (0%)
Query: 22 HKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVS 81
H EALSLF ++ S + N Q+ +A+LKSC + + I G LHGY KLGH+SCQ++
Sbjct: 950 HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLC 1009
Query: 82 KALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQ 141
K LLNLYAK G +D C KLFG++D DPV WNI+LSG A +A VM LF MH+ ++
Sbjct: 1010 KGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNE 1069
Query: 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV-HDA 200
KPNSVT+AIVL CARL AGKS+H+YVIK GLE HTL GN+L SMYAK GLV DA
Sbjct: 1070 AKPNSVTIAIVLPVCARLRED-AGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDA 1128
Query: 201 YSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260
Y+ F+ IE KDVVSWNAVI+G SENK +AF+LF ML PI+PNYATI +ILP+CASL
Sbjct: 1129 YAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASL 1188
Query: 261 DEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSW 320
+E+ GY +G+E+HC+VLRR EL+ DVSV N+L+SFYLR + E+AE LFR MKSRDLVSW
Sbjct: 1189 EENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSW 1248
Query: 321 NAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFL 380
NAIIAGYASN EWLKAL LF E I+ E I PDSVTLVS+LPACA++ NL+V K IHGY +
Sbjct: 1249 NAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYII 1308
Query: 381 RHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFL 440
RHP L ED +VGNAL+SFYAKC+ +AA +TFLMI R+DLISWN++LDAF+ESG + +
Sbjct: 1309 RHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLV 1368
Query: 441 NLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAIL 500
NLL+ ML EGIRPDSITILTII + V R VKETH Y I+ GLL GD +GN +L
Sbjct: 1369 NLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGML 1428
Query: 501 DAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWN 560
DAYAKC N+KYA N+F SL EKRN+VT N +ISGY S D+A+ F+ + DLT WN
Sbjct: 1429 DAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSETDLTTWN 1488
Query: 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA 620
LM+RVYAENDFP+QALSLF +LQ QGMKPD VTIMS+LP C+ MASVH+LRQCHGYVIRA
Sbjct: 1489 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRA 1548
Query: 621 CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFS 680
CF+ VRLNGA + +Y+KCGS+F A K+F PQKD+VM TAM+GG+AMHGMG+ AL++FS
Sbjct: 1549 CFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFS 1608
Query: 681 DMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG 740
MLELGV PDHV+ITAVL ACSHAGLVDEG +IF SIEKV G +PT EQYA +VDLLARG
Sbjct: 1609 YMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARG 1668
Query: 741 GQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800
G+I DAY+ V RMP+EA+ N+WGTLLGACR HHEVELGRVVA+ LF++E+DNIGNYVVMS
Sbjct: 1669 GRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMS 1728
Query: 801 NLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNN--AFMAGDYSHP 850
NLYAADARWDGV+EIR+LM+TR+LKKPA CSWIEV R+ N +F G+ + P
Sbjct: 1729 NLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKNMGSFQKGNANAP 1780
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula] gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/862 (61%), Positives = 666/862 (77%), Gaps = 1/862 (0%)
Query: 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHG 67
+W + I C D H EALS F H L+ S + + +H++ +A+LKSC++L LGK LH
Sbjct: 2 TWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHS 61
Query: 68 YVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDA 127
YV K GH+SC SKALLN+YAKCG++DDC+KLF Q DPV WNI+LSG++ S +DA
Sbjct: 62 YVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDA 121
Query: 128 RVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSL 187
VM +F MH + P+SVT+A VL CAR G + GKS+H YVIK G E T GN+L
Sbjct: 122 DVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNAL 181
Query: 188 TSMYAKRGLVH-DAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246
SMYAK GLV DAY+VFDSI KDVVSWNA+I+GL+EN +L +AF LFS M+ +KPN
Sbjct: 182 VSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPN 241
Query: 247 YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAE 306
YAT+ NILP+CAS DE++ + GR+IH YVL+ EL ADVSVCNAL+SFYL+ GRT+EAE
Sbjct: 242 YATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAE 301
Query: 307 LLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366
LF M +RDLVSWN IIAGYA N EWLK+L++F L++ EM+ DSVT+VS+LPACA L
Sbjct: 302 SLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQL 361
Query: 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSM 426
NL+ GK++H Y LRHP+L ED + GNALVSFYAKC +E AY TF MI R+DLISWNS+
Sbjct: 362 DNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSI 421
Query: 427 LDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486
LDAF E ++S+FL+LL+ ML IRPDS+TILTIIHFC ++LR VKE HGY I++G
Sbjct: 422 LDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGS 481
Query: 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFM 546
LL T +GNAILDAY+KC NI+YA +FQ+L EKRNLVT N +ISGY GS +A M
Sbjct: 482 LLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANM 541
Query: 547 TFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS 606
FS + DLT WNLM+RVYAEND P QAL LFLKLQ QGMKPD VTIMSL+PVC+QMAS
Sbjct: 542 IFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMAS 601
Query: 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGY 666
VHLLRQCHGY+IR+ F+ + L G LL YAKCG I A KIFQ KD+VM TAMIGGY
Sbjct: 602 VHLLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGY 661
Query: 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT 726
AMHGM + AL+ FS ML +G+ PDHV+ T++LSACSHAG + EGL+IF SIEK+ G+KPT
Sbjct: 662 AMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPT 721
Query: 727 PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLF 786
EQ+A +VDLLARGG +S+AYS V ++P+EA+ N+WGTLLGAC+ +HEVELGR+VA++LF
Sbjct: 722 IEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTYHEVELGRIVADKLF 781
Query: 787 EMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD 846
++EA++IGNY+V+SNLYAAD RWDGV+E+RK+M+ +DLKKPA CSWIEVER NN F+ GD
Sbjct: 782 KIEANDIGNYIVLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSWIEVERTNNIFVVGD 841
Query: 847 YSHPRRDMIYWVLSILDEQIKD 868
SHP+R++IY L LD+Q+K+
Sbjct: 842 CSHPQRNLIYSTLCTLDQQVKE 863
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/865 (62%), Positives = 665/865 (76%), Gaps = 1/865 (0%)
Query: 7 KSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALH 66
K+W ++I C + H EALSLF H L+ + + +H + +A+LKSC++L LG+ LH
Sbjct: 7 KTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTLH 66
Query: 67 GYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDD 126
GYV K GH SC +K LLN+YAKCG++ +C KLF Q+ + DPV WNI+LSGF+ S+ D
Sbjct: 67 GYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCD 126
Query: 127 ARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS 186
A VM +F MH + PNSVTVA VL CARLG + AGK +H YVIK G ++ TL GN+
Sbjct: 127 ADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNA 186
Query: 187 LTSMYAKRGLV-HDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKP 245
L SMYAK GLV HDAY+VFD+I KDVVSWNA+I+GL+EN+++ DAF LFS M+ P +P
Sbjct: 187 LVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRP 246
Query: 246 NYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEA 305
NYAT+ NILP+CAS D+ V Y+ GR+IH YVL+ EL ADVSVCNAL+S YL+ G+ EA
Sbjct: 247 NYATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREA 306
Query: 306 ELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAY 365
E LF M +RDLV+WNA IAGY SN EWLKAL+LF L + E + PDSVT+VS+LPACA
Sbjct: 307 EALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQ 366
Query: 366 LKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNS 425
LKNLKVGK+IH Y RHP+L D AVGNALVSFYAKC E AY TF MI +DLISWNS
Sbjct: 367 LKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNS 426
Query: 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTG 485
+ DAF E ++S+FL+LL+CML IRPDS+TIL II C ++LR VKE H Y I+TG
Sbjct: 427 IFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTG 486
Query: 486 LLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAF 545
LL +T +GNAILDAY+KC N++YA +FQ+L EKRNLVT N +ISGY GS +A
Sbjct: 487 SLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDAN 546
Query: 546 MTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA 605
M FS + DLT WNLM+RVYAEND P QAL L +LQA+GMKPD VTIMSLLPVC+QMA
Sbjct: 547 MIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMA 606
Query: 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGG 665
SVHLL QC GY+IR+CF + L ALL YAKCG I A KIFQ +KD+VM TAMIGG
Sbjct: 607 SVHLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGG 666
Query: 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP 725
YAMHGM + AL +FS ML+LG+ PDH++ T++LSACSHAG VDEGL+IF SIEK+ G+KP
Sbjct: 667 YAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKP 726
Query: 726 TPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRL 785
T EQYA +VDLLARGG+IS+AYSLV +P+EA+ N+WGTLLGAC+ HHEVELGR+VAN+L
Sbjct: 727 TVEQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQL 786
Query: 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAG 845
F++EA++IGNY+V+SNLYAADARWDGV+E+R++M+ +DLKKPA CSWIEVER NN F+AG
Sbjct: 787 FKIEANDIGNYIVLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIEVERTNNIFVAG 846
Query: 846 DYSHPRRDMIYWVLSILDEQIKDQV 870
D SHP+R +IY L LD Q+K+ V
Sbjct: 847 DCSHPQRSIIYSTLQTLDRQVKEPV 871
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/791 (67%), Positives = 638/791 (80%), Gaps = 2/791 (0%)
Query: 79 AVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHV 138
++ K LLNLYAK G +D C KLFG++D DPV WNI+LSG A +A VM LF MH+
Sbjct: 14 SLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHM 73
Query: 139 RDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV- 197
++ KPNSVT+AIVL CARL AGKS+H+YVIK GLE HTL GN+L SMYAK GLV
Sbjct: 74 VNEAKPNSVTIAIVLPVCARLRED-AGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVC 132
Query: 198 HDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPIC 257
DAY+ F+ IE KDVVSWNAVI+G SENK +AF+LF ML PI+PNYATI +ILP+C
Sbjct: 133 SDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVC 192
Query: 258 ASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL 317
ASL+E+ GY +G+E+HC+VLRR EL+ DVSV N+L+SFYLR G+ E+AE LFR MKSRDL
Sbjct: 193 ASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDL 252
Query: 318 VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHG 377
VSWNAIIAGYASN EWLKAL LF E I+ E I PDSVTLVS+LPACA++ NL+V K IHG
Sbjct: 253 VSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHG 312
Query: 378 YFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNS 437
Y +RHP L ED +VGNAL+SFYAKC+ +AA +TFLMI R+DLISWN++LDAF+ESG +
Sbjct: 313 YIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCET 372
Query: 438 QFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGN 497
+NLL+ ML EGIRPDSITILTII + V R VKETH Y I+ GLL GD +GN
Sbjct: 373 HLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGN 432
Query: 498 AILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLT 557
+LDAYAKC N+KYA N+F SL EKRN+VT N +ISGY N S D+A+ F+ + DLT
Sbjct: 433 GMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLT 492
Query: 558 PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYV 617
WNLM+RVYAENDFP+QALSLF +LQ QGMKPD VTIMS+LP C+ MASVH+LRQCHGYV
Sbjct: 493 TWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYV 552
Query: 618 IRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALK 677
IRACF+ VRLNGA + +Y+KCGS+F A K+F PQKD+VM TAM+GG+AMHGMG+ AL+
Sbjct: 553 IRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALR 612
Query: 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737
+FS MLELGV PDHV+ITAVL ACSHAGLVDEG +IF SIEKV G +PT EQYA +VDLL
Sbjct: 613 IFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLL 672
Query: 738 ARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797
ARGG+I DAY+ V RMP+EA+ N+WGTLLGACR HHEVELGRVVA+ LF++E+DNIGNYV
Sbjct: 673 ARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYV 732
Query: 798 VMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYW 857
VMSNLYAADARWDGV+EIR+LM+TR+LKKPA CSWIEV R+ N F+AGD SHP+R +IY
Sbjct: 733 VMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYR 792
Query: 858 VLSILDEQIKD 868
LS LD+ +K+
Sbjct: 793 TLSTLDQLMKE 803
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/867 (57%), Positives = 647/867 (74%), Gaps = 2/867 (0%)
Query: 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHG 67
SW + I C + H+E LS+F H+ Q S + ++ +F+A+ KSC +L I +GKAL G
Sbjct: 8 SWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKALQG 67
Query: 68 YVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDA 127
Y K G I+CQ+V K LLNLYA+CG D+C+KLF Q+++ D VTWNI+LSG+ S + D
Sbjct: 68 YAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIHDT 127
Query: 128 RVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSL 187
+ + LF MH + KP+++T+A +L C+R+G GKS+H++V+K GL+R TLVGN+L
Sbjct: 128 KAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNAL 187
Query: 188 TSMYAKRGLV-HDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246
SMYAK G +DAY+ F+SI KDVV+WN +IS L+E ++ DA +LFS ML EPI+PN
Sbjct: 188 ISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPN 247
Query: 247 YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAE 306
Y TI ILP+CAS +V FG+EIH Y+ RR ELI D+SVCNAL++ YLR G+ EEAE
Sbjct: 248 YITIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAE 307
Query: 307 LLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366
+LF +K RDLVSWN +I+GY+ ND+WL+A++ FC+L+ PDSVTL+S+LPACAY
Sbjct: 308 ILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSD-PDSVTLISVLPACAYS 366
Query: 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSM 426
+NL++GK IHGY LRHP L ED+ VGNALVSFY KC+D+++A+ +F +I +DLISWNS+
Sbjct: 367 QNLRIGKMIHGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSV 426
Query: 427 LDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486
L+AF+E G +QF LL+ ML E +PD TIL+II+FC TVL VKE H Y ++ L
Sbjct: 427 LNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACL 486
Query: 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFM 546
D I NA+LDAY+KC I YA +F+S KRNLVT N +IS Y NC S ++A
Sbjct: 487 FEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALT 546
Query: 547 TFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS 606
FS + DLT WNLMIRVYAEN+ P AL LF +LQ +GMKPDAV+IMSLLPVC+++AS
Sbjct: 547 IFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELAS 606
Query: 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGY 666
LL++CHGY R+ F+ V L+GALL YAKCG++ A K+F+ QKD+VM T+MI GY
Sbjct: 607 FRLLKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGY 666
Query: 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT 726
A+HGMG+ ALKVF++MLE GV PDHVV+T++LSACSH GLVD+GL IF S+E+V IKPT
Sbjct: 667 AIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPT 726
Query: 727 PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLF 786
E YA +VDLLARGG+I DAYS V MP++ D N+WGTLLGAC+ HHEVELG VVA +LF
Sbjct: 727 MEHYACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEQLF 786
Query: 787 EMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD 846
E +AD+IGNYVVMSNLYAADA+WDGV+E+RKLMK ++LKKP CSWIEVE + N F+AGD
Sbjct: 787 ETKADDIGNYVVMSNLYAADAKWDGVLEVRKLMKEKELKKPPGCSWIEVEGEKNFFLAGD 846
Query: 847 YSHPRRDMIYWVLSILDEQIKDQVTIS 873
HP+R+MIY +L+ L +QIK V I+
Sbjct: 847 SLHPQRNMIYNLLNTLHQQIKRTVDIT 873
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/830 (55%), Positives = 623/830 (75%), Gaps = 3/830 (0%)
Query: 42 NHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLF 101
+H++F V+K+C S++++ G+ALHG V KLGHI+C VSK++LN+YAKC +DDC K+F
Sbjct: 20 DHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDCQKMF 79
Query: 102 GQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161
Q+D+ DPV WNI+L+G + S M F MH D+PKP+SVT AI+L C RLG
Sbjct: 80 RQMDSVDPVVWNIVLTGLSVSC--GRETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGD 137
Query: 162 IFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRG-LVHDAYSVFDSIEDKDVVSWNAVIS 220
+ GKS+H+Y+IK GLE+ TLVGN+L SMYAK G ++ DA++ FD I DKDVVSWNA+I+
Sbjct: 138 SYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIA 197
Query: 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRA 280
G SENK++ DAFR F ML EP +PNYATI N+LP+CAS+ +++ Y GR+IH YV++R+
Sbjct: 198 GFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRS 257
Query: 281 ELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLF 340
L V VCN+LVSFYLR GR EEA LF RM S+DLVSWN +IAGYASN EWLKAL LF
Sbjct: 258 WLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLF 317
Query: 341 CELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYA 400
L+ K + DSVT++S+LP CA L +L GKEIH Y LRH YL ED +VGNAL+SFYA
Sbjct: 318 HNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYA 377
Query: 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460
+ D AAY F ++ +D+ISWN++LDAF++S QFLNLL+ + E I DS+TIL+
Sbjct: 378 RFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILS 437
Query: 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520
++ FCT V G VKE HGY +K GLL + E +GNA+LDAYAKC N++YA +FQ L
Sbjct: 438 LLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLS 497
Query: 521 EKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFL 580
E+R LVT+N ++SGY N GS D+A M FS + DLT W+LM+R+YAE+ FPN+A+ +F
Sbjct: 498 ERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFR 557
Query: 581 KLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640
++QA+GM+P+ VTIM+LLPVC+Q+AS+HL+RQCHGY+IR +RL G LL +YAKCGS
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGRLGDIRLKGTLLDVYAKCGS 617
Query: 641 IFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700
+ A +FQ ++D+VM TAM+ GYA+HG GK AL +FS M++ + PDHV IT +L+A
Sbjct: 618 LKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIKPDHVFITTLLTA 677
Query: 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCN 760
C HAGL+ +GL+I+ SI V G+KPT EQYA VDLLARGG++ DAYS + +MPVE + N
Sbjct: 678 CCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACAVDLLARGGRLDDAYSFITQMPVEPNAN 737
Query: 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820
+WGTLL AC ++ ++LG VAN L + E+D+ GN+V++SN+YAADA+W+GV+E+R LMK
Sbjct: 738 IWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMK 797
Query: 821 TRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQV 870
+++KKPA CSW+EV+ K + F++GD SHPRRD I+ +++ L Q+K+ V
Sbjct: 798 KKEMKKPAGCSWLEVDGKRDVFVSGDCSHPRRDSIFDLVNALYLQMKEPV 847
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241649|ref|NP_196466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171897|sp|Q9FNN9.1|PP370_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g08490 gi|9759343|dbj|BAB09998.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332003927|gb|AED91310.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/830 (55%), Positives = 617/830 (74%), Gaps = 3/830 (0%)
Query: 42 NHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLF 101
+H++F V+K+C S++D+ G+ALHG V KLGHI+C VSK++LN+YAKC +DDC K+F
Sbjct: 20 DHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMF 79
Query: 102 GQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161
Q+D+ DPV WNI+L+G + S M F MH D+PKP+SVT AIVL C RLG
Sbjct: 80 RQMDSLDPVVWNIVLTGLSVSC--GRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGD 137
Query: 162 IFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVH-DAYSVFDSIEDKDVVSWNAVIS 220
+ GKS+H+Y+IK GLE+ TLVGN+L SMYAK G + DAY+ FD I DKDVVSWNA+I+
Sbjct: 138 SYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIA 197
Query: 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRA 280
G SEN ++ DAFR F ML EP +PNYATI N+LP+CAS+D+++ GR+IH YV++R+
Sbjct: 198 GFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRS 257
Query: 281 ELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLF 340
L V VCN+LVSFYLR GR EEA LF RM S+DLVSWN +IAGYASN EW KA LF
Sbjct: 258 WLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLF 317
Query: 341 CELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYA 400
L+ K + PDSVT++S+LP CA L +L GKEIH Y LRH YL ED +VGNAL+SFYA
Sbjct: 318 HNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYA 377
Query: 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460
+ D AAY F ++ +D+ISWN++LDAF++S QFLNLL+ +L E I DS+TIL+
Sbjct: 378 RFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILS 437
Query: 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520
++ FC V G VKE HGY +K GLL + E +GNA+LDAYAKC N++YA +F L
Sbjct: 438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLS 497
Query: 521 EKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFL 580
E+R LV++N ++SGY N GS D+A M F+ + DLT W+LM+R+YAE+ PN+A+ +F
Sbjct: 498 ERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFR 557
Query: 581 KLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640
++QA+GM+P+ VTIM+LLPVC+Q+AS+HL+RQCHGY+IR +RL G LL +YAKCGS
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLGDIRLKGTLLDVYAKCGS 617
Query: 641 IFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700
+ A +FQ ++D+VM TAM+ GYA+HG GK AL ++S M E + PDHV IT +L+A
Sbjct: 618 LKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTA 677
Query: 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCN 760
C HAGL+ +GL+I+ SI V G+KPT EQYA VDL+ARGG++ DAYS V +MPVE + N
Sbjct: 678 CCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNAN 737
Query: 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820
+WGTLL AC ++ ++LG VAN L + E+D+ GN+V++SN+YAADA+W+GV+E+R LMK
Sbjct: 738 IWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMK 797
Query: 821 TRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQV 870
+++KKPA CSW+EV+ + N F++GD SHPRRD I+ +++ L Q+K+ V
Sbjct: 798 KKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMKEPV 847
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449484874|ref|XP_004157004.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/808 (57%), Positives = 601/808 (74%), Gaps = 2/808 (0%)
Query: 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHG 67
SW + I C + H+E LS+F H+ Q S + ++ +F+A+ KSC +L I +GKAL G
Sbjct: 8 SWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINVGKALQG 67
Query: 68 YVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDA 127
Y K G I CQ+V K LLNLYA+CG D+C+KLF Q++ D VTWNI+LSG+ S + D
Sbjct: 68 YAVKQGEIVCQSVYKGLLNLYARCGAFDECWKLFEQLNRRDVVTWNIILSGYCRSQIHDT 127
Query: 128 RVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSL 187
+ + LF MH + KP+++T+A +L C+R+G GKS+H++V+K GL+R TLVGN+L
Sbjct: 128 KAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNAL 187
Query: 188 TSMYAKRGLV-HDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246
SMYAK G +DAY+ F+SI KDVV+WN +IS L+E ++ DA +LFS ML EPI+PN
Sbjct: 188 ISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPN 247
Query: 247 YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAE 306
Y TI ILP+CAS +V FG+EIH Y+ RR ELI D+SVCNAL++ YLR G+ EEAE
Sbjct: 248 YITIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAE 307
Query: 307 LLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366
+LF +K RDLVSWN +I+GY+ ND+WL+A++ FC+L+ PDSVTL+S+LPACAY
Sbjct: 308 ILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSD-PDSVTLISVLPACAYS 366
Query: 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSM 426
+NL++GK IHGY LRHP L ED+ VGNALVSFY KC+D+++A+ +F +I +DLISWNS+
Sbjct: 367 QNLRIGKMIHGYILRHPILSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSV 426
Query: 427 LDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486
L+AF+E G +QFL LL+ ML E +PD TIL+II+FC TVL VKE H Y ++ L
Sbjct: 427 LNAFAEFGNTTQFLRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACL 486
Query: 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFM 546
D I NA+LDAY+KC I YA +F+S KRNLVT N +IS Y NC S ++A
Sbjct: 487 FEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALT 546
Query: 547 TFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS 606
FS + DLT WNLMIRVYAEN+ P AL LF +LQ +GMKPDAV+IMSLLPVC+++AS
Sbjct: 547 IFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELAS 606
Query: 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGY 666
LL++CHGY R+ F+ V L+GALL YAKCG++ A K+F+ QKD+VM T+MI GY
Sbjct: 607 FRLLKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGY 666
Query: 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT 726
A+HGMG+ ALKVF++MLE GV PDHVV+T++LSACSH GLVD+GL IF S+E+V IKPT
Sbjct: 667 AIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPT 726
Query: 727 PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLF 786
E YA +VDLLARGG+I DAYS V MP++ D N+WGTLLGAC+ HHEVELG VVA +LF
Sbjct: 727 MEHYACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEKLF 786
Query: 787 EMEADNIGNYVVMSNLYAADARWDGVVE 814
E +AD+IGNYVVMSNLYAADA+WDGV+E
Sbjct: 787 ETKADDIGNYVVMSNLYAADAKWDGVLE 814
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 875 | ||||||
| TAIR|locus:2159582 | 849 | SLG1 "AT5G08490" [Arabidopsis | 0.945 | 0.974 | 0.553 | 5.6e-258 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.598 | 0.611 | 0.326 | 6.7e-72 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.606 | 0.566 | 0.279 | 1.6e-116 | |
| TAIR|locus:2090444 | 820 | AT3G22150 "AT3G22150" [Arabido | 0.361 | 0.385 | 0.389 | 3.3e-113 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.612 | 0.503 | 0.306 | 2.7e-65 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.664 | 0.833 | 0.344 | 4e-106 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.390 | 0.343 | 0.368 | 6.4e-102 | |
| TAIR|locus:2019130 | 895 | OTP87 "organelle transcript pr | 0.569 | 0.556 | 0.288 | 9e-99 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.603 | 0.608 | 0.317 | 6e-64 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.565 | 0.629 | 0.322 | 4.2e-96 |
| TAIR|locus:2159582 SLG1 "AT5G08490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2483 (879.1 bits), Expect = 5.6e-258, P = 5.6e-258
Identities = 459/830 (55%), Positives = 617/830 (74%)
Query: 42 NHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLF 101
+H++F V+K+C S++D+ G+ALHG V KLGHI+C VSK++LN+YAKC +DDC K+F
Sbjct: 20 DHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMF 79
Query: 102 GQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161
Q+D+ DPV WNI+L+G + S M F MH D+PKP+SVT AIVL C RLG
Sbjct: 80 RQMDSLDPVVWNIVLTGLSVSC--GRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGD 137
Query: 162 IFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVH-DAYSVFDSIEDKDVVSWNAVIS 220
+ GKS+H+Y+IK GLE+ TLVGN+L SMYAK G + DAY+ FD I DKDVVSWNA+I+
Sbjct: 138 SYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIA 197
Query: 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRA 280
G SEN ++ DAFR F ML EP +PNYATI N+LP+CAS+D+++ GR+IH YV++R+
Sbjct: 198 GFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRS 257
Query: 281 ELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLF 340
L V VCN+LVSFYLR GR EEA LF RM S+DLVSWN +IAGYASN EW KA LF
Sbjct: 258 WLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLF 317
Query: 341 CELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYA 400
L+ K + PDSVT++S+LP CA L +L GKEIH Y LRH YL ED +VGNAL+SFYA
Sbjct: 318 HNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYA 377
Query: 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460
+ D AAY F ++ +D+ISWN++LDAF++S QFLNLL+ +L E I DS+TIL+
Sbjct: 378 RFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILS 437
Query: 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520
++ FC V G VKE HGY +K GLL + E +GNA+LDAYAKC N++YA +F L
Sbjct: 438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLS 497
Query: 521 EKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFL 580
E+R LV++N ++SGY N GS D+A M F+ + DLT W+LM+R+YAE+ PN+A+ +F
Sbjct: 498 ERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFR 557
Query: 581 KLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640
++QA+GM+P+ VTIM+LLPVC+Q+AS+HL+RQCHGY+IR +RL G LL +YAKCGS
Sbjct: 558 EIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLGDIRLKGTLLDVYAKCGS 617
Query: 641 IFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700
+ A +FQ ++D+VM TAM+ GYA+HG GK AL ++S M E + PDHV IT +L+A
Sbjct: 618 LKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTA 677
Query: 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCN 760
C HAGL+ +GL+I+ SI V G+KPT EQYA VDL+ARGG++ DAYS V +MPVE + N
Sbjct: 678 CCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNAN 737
Query: 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820
+WGTLL AC ++ ++LG VAN L + E+D+ GN+V++SN+YAADA+W+GV+E+R LMK
Sbjct: 738 IWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMK 797
Query: 821 TRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQV 870
+++KKPA CSW+EV+ + N F++GD SHPRRD I+ +++ L Q+K+ V
Sbjct: 798 KKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMKEPV 847
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 178/546 (32%), Positives = 298/546 (54%)
Query: 7 KSWITIINGFCRDGLHKEALSLFAHEL--QSSPSVRHNHQLFSAVLKSCTSLADILLGKA 64
+ W +II+ F R+GL +AL+ + L SP V F ++K+C +L +
Sbjct: 104 RPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDV----STFPCLVKACVALKNFKGIDF 159
Query: 65 LHGYVTKLGHISC-QAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA-CS 122
L V+ LG + C + V+ +L+ Y + G ID KLF +V D V WN++L+G+A C
Sbjct: 160 LSDTVSSLG-MDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218
Query: 123 HVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTL 182
+D V+ F M + DQ PN+VT VLS CA I G LH V+ G++
Sbjct: 219 ALDS--VIKGFSVMRM-DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS 275
Query: 183 VGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEP 242
+ NSL SMY+K G DA +F + D V+WN +ISG ++ ++ ++ F M++
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335
Query: 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRT 302
+ P+ T ++LP + E++ Y ++IHCY++R + + D+ + +AL+ Y +
Sbjct: 336 VLPDAITFSSLLPSVSKF-ENLEYC--KQIHCYIMRHS-ISLDIFLTSALIDAYFKCRGV 391
Query: 303 EEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPA 362
A+ +F + S D+V + A+I+GY N ++ +L +F L+ K I P+ +TLVS+LP
Sbjct: 392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLV-KVKISPNEITLVSILPV 450
Query: 363 CAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLIS 422
L LK+G+E+HG+ ++ + + +G A++ YAKC M AY F + +RD++S
Sbjct: 451 IGILLALKLGRELHGFIIKKGF-DNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVS 509
Query: 423 WNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLI 482
WNSM+ ++S S +++ M + GI D ++I + C + E K HG++I
Sbjct: 510 WNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMI 569
Query: 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSAD 542
K L D + ++D YAKC N+K A NVF+++ EK N+V++N +I+ N G
Sbjct: 570 KHSLA-SDVYSE--STLIDMYAKCGNLKAAMNVFKTMKEK-NIVSWNSIIAACGNHGKLK 625
Query: 543 EAFMTF 548
++ F
Sbjct: 626 DSLCLF 631
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 1.6e-116, Sum P(2) = 1.6e-116
Identities = 154/551 (27%), Positives = 293/551 (53%)
Query: 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILL-GK 63
N SW T+++G R GL+ E + F ++ + + ++++ +C + G
Sbjct: 22 NEVSWNTMMSGIVRVGLYLEGMEFFRK--MCDLGIKPSSFVIASLVTACGRSGSMFREGV 79
Query: 64 ALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSH 123
+HG+V K G +S VS A+L+LY G++ K+F ++ + + V+W L+ G++
Sbjct: 80 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS-DK 138
Query: 124 VDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLV 183
+ V++++ M + N ++++V+S+C L G+ + V+K GLE V
Sbjct: 139 GEPEEVIDIYKGMR-GEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 197
Query: 184 GNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPI 243
NSL SM G V A +FD + ++D +SWN++ + ++N + ++FR+FS M
Sbjct: 198 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 257
Query: 244 KPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTE 303
+ N T+ +L + +D +GR IH V++ + V VCN L+ Y GR+
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQK---WGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSV 313
Query: 304 EAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPAC 363
EA L+F++M ++DL+SWN+++A + ++ L AL L C +I+ + VT S L AC
Sbjct: 314 EANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS-VNYVTFTSALAAC 372
Query: 364 AYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISW 423
+ G+ +HG + L + +GNALVS Y K +M + R L + RRD+++W
Sbjct: 373 FTPDFFEKGRILHGLVVVSG-LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 431
Query: 424 NSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT---VLREGMVKETHGY 480
N+++ ++E + L M +EG+ + IT+++++ C +L G K H Y
Sbjct: 432 NALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG--KPLHAY 489
Query: 481 LIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGS 540
++ G +++ ++ N+++ YAKC ++ + ++F L + RN++T+N +++ A+ G
Sbjct: 490 IVSAGF---ESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITWNAMLAANAHHGH 545
Query: 541 ADEAFMTFSRI 551
+E S++
Sbjct: 546 GEEVLKLVSKM 556
|
|
| TAIR|locus:2090444 AT3G22150 "AT3G22150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 3.3e-113, Sum P(2) = 3.3e-113
Identities = 125/321 (38%), Positives = 193/321 (60%)
Query: 552 YA-RDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLL 610
YA RD WN MI Y +N + +F K+ Q ++P+AVT+ S+LP CSQ+ SV L
Sbjct: 481 YAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLG 540
Query: 611 RQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMH 669
+Q HG+ IR D V + AL+ +Y+K G+I A +F +++ V T MI GY H
Sbjct: 541 KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQH 600
Query: 670 GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ 729
GMG+ A+ +F M E G+ PD + AVLSACS++GL+DEGL+IF + +V I+P+ E
Sbjct: 601 GMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEH 660
Query: 730 YASLVDLLARGGQISDAYSLVNRMPVEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEM 788
Y + D+L R G++++AY V + E + +WG+LLG+C++H E+EL V+ RL +
Sbjct: 661 YCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKF 720
Query: 789 E-ADNIGNY-VVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD 846
+ N Y V++SN+YA + +W V ++R+ M+ + LKK S IE+ N F++ D
Sbjct: 721 DKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRD 780
Query: 847 YSHPRRDMIYWVLSILDEQIK 867
HP IY V+ L + ++
Sbjct: 781 QEHPHSSEIYDVIDGLAKDMR 801
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| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 2.7e-65, P = 2.7e-65
Identities = 169/552 (30%), Positives = 277/552 (50%)
Query: 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHG 67
SW+ +I+G ++ EA+ LF + FS+VL +C + + +G+ LHG
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLG--IMPTPYAFSSVLSACKKIESLEIGEQLHG 312
Query: 68 YVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA-CSHVDD 126
V KLG S V AL++LY G + +F + D VT+N L++G + C + +
Sbjct: 313 LVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEK 372
Query: 127 ARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS 186
A M LF MH+ D +P+S T+A ++ AC+ G +F G+ LHAY K G + + +
Sbjct: 373 A--MELFKRMHL-DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429
Query: 187 LTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246
L ++YAK + A F E ++VV WN ++ L ++FR+F M E I PN
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 247 YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAE 306
T +IL C L + G +IH +++ + VC+ L+ Y + G+ + A
Sbjct: 490 QYTYPSILKTCIRLGD---LELGEQIHSQIIK-TNFQLNAYVCSVLIDMYAKLGKLDTAW 545
Query: 307 LLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366
+ R +D+VSW +IAGY + KAL F +++ + I D V L + + ACA L
Sbjct: 546 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG-IRSDEVGLTNAVSACAGL 604
Query: 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSM 426
+ LK G++IH + D NALV+ Y++C +E +Y F D I+WN++
Sbjct: 605 QALKEGQQIHAQACVSGF-SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 427 LDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486
+ F +SG N + L + M EGI ++ T + + + K+ H + KTG
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY 723
Query: 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFM 546
D+E + NA++ YAKC +I A F + K N V++N +I+ Y+ G EA
Sbjct: 724 ---DSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHGFGSEALD 779
Query: 547 TFSRIYARDLTP 558
+F ++ ++ P
Sbjct: 780 SFDQMIHSNVRP 791
|
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 204/593 (34%), Positives = 344/593 (58%)
Query: 290 NALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMI 349
N++V+ + G +EA+ LFR M RD +WN++++G+A +D +AL F ++ KE
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA-MMHKEGF 148
Query: 350 WPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAY 409
+ + S+L AC+ L ++ G ++H + P+L D +G+ALV Y+KC ++ A
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQ 207
Query: 410 RTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL 469
R F + R+++SWNS++ F ++G + L++ ML + PD +T+ ++I C ++
Sbjct: 208 RVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLS 267
Query: 470 REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFN 529
+ +E HG ++K L D + NA +D YAKC IK A +F S+ RN++
Sbjct: 268 AIKVGQEVHGRVVKNDKLRNDII--LSNAFVDMYAKCSRIKEARFIFDSM-PIRNVIAET 324
Query: 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKP 589
+ISGYA S A + F+++ R++ WN +I Y +N +ALSLF L+ + + P
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384
Query: 590 DAVTIMSLLPVCSQMASVHLLRQCHGYVIRACF-------DGVRLNGALLHLYAKCGSIF 642
+ ++L C+ +A +HL Q H +V++ F D + + +L+ +Y KCG +
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444
Query: 643 SASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS 702
+F+ ++D V AMI G+A +G G AL++F +MLE G PDH+ + VLSAC
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG 504
Query: 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVW 762
HAG V+EG F S+ + G+ P + Y +VDLL R G + +A S++ MP++ D +W
Sbjct: 505 HAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIW 564
Query: 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822
G+LL AC++H + LG+ VA +L E+E N G YV++SN+YA +W+ V+ +RK M+
Sbjct: 565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKE 624
Query: 823 DLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI 875
+ K CSWI+++ ++ FM D SHPR+ I+ +L IL +++ + +EI
Sbjct: 625 GVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEI 677
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| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 6.4e-102, Sum P(2) = 6.4e-102
Identities = 128/347 (36%), Positives = 198/347 (57%)
Query: 527 TFNPVISGYANCGSADEAFMTFSRIYAR-DLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585
T N +I+ Y CG D FSR+ R D WN MI Y N+ +AL L +
Sbjct: 554 TENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQT 613
Query: 586 GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDG-VRLNGALLHLYAKCGSIFSA 644
G + D+ ++L + +A++ + H +RAC + V + AL+ +Y+KCG + A
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 673
Query: 645 SKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDM-LELGVNPDHVVITAVLSACSH 703
+ F P ++ +MI GYA HG G+ ALK+F M L+ PDHV VLSACSH
Sbjct: 674 LRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSH 733
Query: 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWG 763
AGL++EG + F S+ G+ P E ++ + D+L R G++ + +MP++ + +W
Sbjct: 734 AGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWR 793
Query: 764 TLLGAC-RIH-HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821
T+LGAC R + + ELG+ A LF++E +N NYV++ N+YAA RW+ +V+ RK MK
Sbjct: 794 TVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKD 853
Query: 822 RDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868
D+KK A SW+ ++ + F+AGD SHP D+IY L L+ +++D
Sbjct: 854 ADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRD 900
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| TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 9.0e-99, Sum P(2) = 9.0e-99
Identities = 151/524 (28%), Positives = 275/524 (52%)
Query: 3 EPNAKSWITIINGFCRDGLHKEALSLFA--HELQSSPSVRHNHQLFSAVLKSCTSLADIL 60
+P+ S +I+G+ + L +E+L F+ H L N + +V+ +C++L L
Sbjct: 112 QPDVVSCNIMISGYKQHRLFEESLRFFSKMHFL----GFEANEISYGSVISACSALQAPL 167
Query: 61 LGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA 120
+ + + K+G+ + V AL+++++K +D YK+F + + WN +++G A
Sbjct: 168 FSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAG-A 226
Query: 121 CSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERH 180
+ + V +LF+ M V Q KP+S T + VL+ACA L + GK + A VIK G E
Sbjct: 227 LRNQNYGAVFDLFHEMCVGFQ-KPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-D 284
Query: 181 TLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLT 240
V ++ +YAK G + +A VF I + VVSW ++SG +++ A +F M
Sbjct: 285 VFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRH 344
Query: 241 EPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFG 300
++ N T+ +++ C ++H +V + + D SV AL+S Y + G
Sbjct: 345 SGVEINNCTVTSVISACGRPSMVCE---ASQVHAWVFKSGFYL-DSSVAAALISMYSKSG 400
Query: 301 RTEEAELLFRRM---KSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLV 357
+ +E +F + + +++V N +I ++ + + KA+ LF ++ +E + D ++
Sbjct: 401 DIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRML-QEGLRTDEFSVC 457
Query: 358 SLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR 417
SLL + L L +GK++HGY L+ L D VG++L + Y+KC +E +Y+ F I
Sbjct: 458 SLL---SVLDCLNLGKQVHGYTLKSG-LVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPF 513
Query: 418 RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKET 477
+D W SM+ F+E GY + + L + ML +G PD T+ ++ C++ KE
Sbjct: 514 KDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEI 573
Query: 478 HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521
HGY ++ G+ D ++G+A+++ Y+KC ++K A V+ L E
Sbjct: 574 HGYTLRAGI---DKGMDLGSALVNMYSKCGSLKLARQVYDRLPE 614
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| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 175/552 (31%), Positives = 292/552 (52%)
Query: 7 KSWITIINGFCRDGLHKEALSLFA--HELQSSPSVRHNHQLFSAVLKSCTSLADILLGKA 64
+S+I+++ GF RDG +EA LF H L + + +FS+VLK +L D L G+
Sbjct: 59 ESYISLLFGFSRDGRTQEAKRLFLNIHRL----GMEMDCSIFSSVLKVSATLCDELFGRQ 114
Query: 65 LHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHV 124
LH K G + +V +L++ Y K D K+F ++ + VTW L+SG+A + +
Sbjct: 115 LHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174
Query: 125 DDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVG 184
+D V+ LF M + +PNS T A L A G G +H V+K GL++ V
Sbjct: 175 ND-EVLTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVS 232
Query: 185 NSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIK 244
NSL ++Y K G V A +FD E K VV+WN++ISG + N + +A +F M ++
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVR 292
Query: 245 PNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEE 304
+ ++ +++ +CA+L E F ++HC V++ L D ++ AL+ Y + +
Sbjct: 293 LSESSFASVIKLCANLKE---LRFTEQLHCSVVKYGFLF-DQNIRTALMVAYSKCTAMLD 348
Query: 305 AELLFRRMKS-RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPAC 363
A LF+ + ++VSW A+I+G+ ND +A++LF E+ K + P+ T +L A
Sbjct: 349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG-VRPNEFTYSVILTAL 407
Query: 364 AYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISW 423
+ E+H ++ Y E + VG AL+ Y K +E A + F I +D+++W
Sbjct: 408 PVISP----SEVHAQVVKTNY-ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAW 462
Query: 424 NSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCT-TVLREGMVKETHGYLI 482
++ML ++++G + + + GI+P+ T +I++ C T G K+ HG+ I
Sbjct: 463 SAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAI 522
Query: 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSAD 542
K+ L D+ + +A+L YAK NI+ A VF+ EK +LV++N +ISGYA G A
Sbjct: 523 KSRL---DSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQAM 578
Query: 543 EAFMTFSRIYAR 554
+A F + R
Sbjct: 579 KALDVFKEMKKR 590
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 162/502 (32%), Positives = 280/502 (55%)
Query: 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDA 429
K G + F+ + D + NA+++ + + M+ A F + RD+++WNSM+
Sbjct: 193 KCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISG 252
Query: 430 FSESGYNSQFLNLLNCMLMEGI-RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLL 488
F++ GY+ + L++ + ML + + PD T+ +++ C + + + K+ H +++ TG
Sbjct: 253 FNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF-- 310
Query: 489 GDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR-NLVTFNPVISGYANCGSADEAFMT 547
D + NA++ Y++C ++ A + + K + F ++ GY G ++A
Sbjct: 311 -DISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNI 369
Query: 548 FSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607
F + RD+ W MI Y ++ +A++LF + G +P++ T+ ++L V S +AS+
Sbjct: 370 FVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASL 429
Query: 608 HLLRQCHGYVIRAC-FDGVRLNGALLHLYAKCGSIFSASKIFQC-HPQKDVVMLTAMIGG 665
+Q HG +++ V ++ AL+ +YAK G+I SAS+ F ++D V T+MI
Sbjct: 430 SHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIA 489
Query: 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP 725
A HG + AL++F ML G+ PDH+ V SAC+HAGLV++G + F ++ V I P
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP 549
Query: 726 TPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRL 785
T YA +VDL R G + +A + +MP+E D WG+LL ACR+H ++LG+V A RL
Sbjct: 550 TLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL 609
Query: 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAG 845
+E +N G Y ++NLY+A +W+ +IRK MK +KK SWIEV+ K + F
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVE 669
Query: 846 DYSHPRRDMIYWVLSILDEQIK 867
D +HP ++ IY + + ++IK
Sbjct: 670 DGTHPEKNEIYMTMKKIWDEIK 691
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNN9 | PP370_ARATH | No assigned EC number | 0.5530 | 0.9451 | 0.9740 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00040998 | hypothetical protein (870 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 875 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-141 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-87 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-82 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-78 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-69 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 440 bits (1132), Expect = e-141
Identities = 236/753 (31%), Positives = 398/753 (52%), Gaps = 55/753 (7%)
Query: 121 CSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIK----FG 176
CSH + + L +M P VA+ C + G + + + G
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 177 LERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFS 236
+ +GN++ SM+ + G + A+ VF + ++D+ SWN ++ G ++ +A L+
Sbjct: 121 VR----LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH 176
Query: 237 WMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFY 296
ML ++P+ T +L C + + GRE+H +V+R DV V NAL++ Y
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVVRFG-FELDVDVVNALITMY 232
Query: 297 LRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTL 356
++ G A L+F RM RD +SWNA+I+GY N E L+ L LF + + PD +T+
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTI 291
Query: 357 VSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC 416
S++ AC L + ++G+E+HGY ++ + D +V N+L+ Y A + F +
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 417 RRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKE 476
+D +SW +M+ + ++G + L M + + PD ITI +++ C + + +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 477 THGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYA 536
H + GL+ + NA+++ Y+KC+ I A VF ++ EK +++++ +I+G
Sbjct: 411 LHELAERKGLISYVV---VANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGL- 465
Query: 537 NCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMS 596
R+ R +AL F ++ +KP++VT+++
Sbjct: 466 -------------RLNNRCF-----------------EALIFFRQMLLT-LKPNSVTLIA 494
Query: 597 LLPVCSQMASVHLLRQCHGYVIRA--CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK 654
L C+++ ++ ++ H +V+R FDG L ALL LY +CG + A F H +K
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSH-EK 552
Query: 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714
DVV ++ GY HG G A+++F+ M+E GVNPD V ++L ACS +G+V +GLE F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHE 774
S+E+ I P + YA +VDLL R G++++AY+ +N+MP+ D VWG LL ACRIH
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
Query: 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIE 834
VELG + A +FE++ +++G Y+++ NLYA +WD V +RK M+ L CSW+E
Sbjct: 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732
Query: 835 VERKNNAFMAGDYSHPRRDMIYWVLSILDEQIK 867
V+ K +AF+ D SHP+ I VL E++K
Sbjct: 733 VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 4e-87
Identities = 156/518 (30%), Positives = 274/518 (52%), Gaps = 37/518 (7%)
Query: 352 DSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRT 411
+ T +L+ AC LK+++ K ++ + + E D + N ++ + KC + A R
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGF-EPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 412 FLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLRE 471
F + R+L SW +++ ++G + L M +G + T + ++ +
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 472 GMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPV 531
++ H ++KTG++ GDT + A++D Y+KC +I+ A VF + EK V +N +
Sbjct: 241 RAGQQLHCCVLKTGVV-GDT--FVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSM 296
Query: 532 ISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA 591
++GYA G ++EA L L+ +++ G+ D
Sbjct: 297 LAGYALHGYSEEA-------------------------------LCLYYEMRDSGVSIDQ 325
Query: 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQC 650
T ++ + S++A + +Q H +IR F + N AL+ LY+K G + A +F
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 651 HPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEG 710
P+K+++ A+I GY HG G A+++F M+ GV P+HV AVLSAC ++GL ++G
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 711 LEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACR 770
EIF+S+ + IKP YA +++LL R G + +AY+++ R P + N+W LL ACR
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
Query: 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAAC 830
IH +ELGR+ A +L+ M + + NYVV+ NLY + R ++ + +K + L AC
Sbjct: 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
Query: 831 SWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868
+WIEV++++++F +GD HP+ IY L L ++I +
Sbjct: 566 TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 2e-82
Identities = 175/600 (29%), Positives = 296/600 (49%), Gaps = 57/600 (9%)
Query: 13 INGFCRDGLHKEALSLFAHELQSSPSVRH--NHQLFSAVLKSCTSLADILLGKALHGYVT 70
+ C G ++AL L L+S +R + + A+ + C + G +
Sbjct: 58 LRALCSHGQLEQALKL----LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 71 KLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA-CSHVDDARV 129
+ A+L+++ + G + + +FG++ D +WN+L+ G+A + D+A
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA-- 171
Query: 130 MNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTS 189
+ L++ M + +P+ T VL C + + G+ +HA+V++FG E V N+L +
Sbjct: 172 LCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 190 MYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYAT 249
MY K G V A VFD + +D +SWNA+ISG EN + LF M + P+ T
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 250 ILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLF 309
I +++ C L ++ GRE+H YV++ DVSVCN+L+ YL G EAE +F
Sbjct: 291 ITSVISACELLGDER---LGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 310 RRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNL 369
RM+++D VSW A+I+GY N KAL + L+ ++ + PD +T+ S+L ACA L +L
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDA 429
VG ++H R + V NAL+ Y+KC ++ A F I +D+ISW S++
Sbjct: 406 DVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
Query: 430 FSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTV--LREGMVKETHGYLIKTGLL 487
+ + L ML+ ++P+S+T++ + C + L G KE H ++++TG+
Sbjct: 465 LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG--KEIHAHVLRTGIG 521
Query: 488 LGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMT 547
+ NA+LD Y +C + YA+N F S
Sbjct: 522 FDGF---LPNALLDLYVRCGRMNYAWNQFNS----------------------------- 549
Query: 548 FSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607
+ +D+ WN+++ Y + + A+ LF ++ G+ PD VT +SLL CS+ V
Sbjct: 550 ----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 2e-78
Identities = 154/477 (32%), Positives = 248/477 (51%), Gaps = 17/477 (3%)
Query: 1 MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADIL 60
M E + SW ++ G+ + G EAL L+ L + VR + F VL++C + D+
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG--VRPDVYTFPCVLRTCGGIPDLA 204
Query: 61 LGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA 120
G+ +H +V + G V AL+ +Y KCG + +F ++ D ++WN ++SG+
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
Query: 121 CSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERH 180
+ + LF+ M P+ +T+ V+SAC LG G+ +H YV+K G
Sbjct: 265 ENGECLEG-LELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 181 TLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLT 240
V NSL MY G +A VF +E KD VSW A+ISG +N + A ++ M
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 241 EPIKPNYATILNILPICASL-DEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRF 299
+ + P+ TI ++L CA L D DVG ++H + R LI+ V V NAL+ Y +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGV----KLH-ELAERKGLISYVVVANALIEMYSKC 437
Query: 300 GRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSL 359
++A +F + +D++SW +IIAG N+ +AL F +++ + P+SVTL++
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAA 495
Query: 360 LPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD 419
L ACA + L GKEIH + LR + D + NAL+ Y +C M A+ F +D
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTG-IGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKD 553
Query: 420 LISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKE 476
++SWN +L + G S + L N M+ G+ PD +T ++++ C+ R GMV +
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS---RSGMVTQ 607
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 2e-69
Identities = 164/583 (28%), Positives = 265/583 (45%), Gaps = 62/583 (10%)
Query: 216 NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCY 275
N+ + L + L A +L M + + + + +C + G +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC---EWKRAVEEGSRVCSR 111
Query: 276 VLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLK 335
L + V + NA++S ++RFG A +F +M RDL SWN ++ GYA + +
Sbjct: 112 ALSSHPSLG-VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 336 ALNLFCELITKEMIW----PDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAV 391
AL L+ M+W PD T +L C + +L G+E+H + +R + E D V
Sbjct: 171 ALCLY-----HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF-ELDVDV 224
Query: 392 GNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGI 451
NAL++ Y KC D+ +A F + RRD ISWN+M+ + E+G + L L M +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 452 RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKY 511
PD +TI ++I C + E + +E HGY++KTG +
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTG-------------------------F 319
Query: 512 AFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDF 571
A +V N +I Y + GS EA FSR+ +D W MI Y +N
Sbjct: 320 AVDV----------SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369
Query: 572 PNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDG-VRLNGA 630
P++AL + ++ + PD +TI S+L C+ + + + + H R V + A
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 631 LLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD 690
L+ +Y+KC I A ++F P+KDV+ T++I G ++ AL F ML L + P+
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPN 488
Query: 691 HVVITAVLSACSHAGLVDEGLEI----FRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746
V + A LSAC+ G + G EI R+ G P +L+DL R G+++ A
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYA 543
Query: 747 YSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789
++ N E D W LL H + + + NR+ E
Sbjct: 544 WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 2e-43
Identities = 103/358 (28%), Positives = 178/358 (49%), Gaps = 12/358 (3%)
Query: 20 GLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQA 79
G H+EAL LF L++ + A++++C +L I KA++ +V G Q
Sbjct: 101 GRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 80 VSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLF--YNMH 137
+ +L ++ KCG++ D +LF ++ + +W ++ G VD F +
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL----VDAGNYREAFALFREM 215
Query: 138 VRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV 197
D T ++L A A LG AG+ LH V+K G+ T V +L MY+K G +
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275
Query: 198 HDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPIC 257
DA VFD + +K V+WN++++G + + +A L+ M + + T ++ I
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 258 ASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL 317
+ L ++ H ++R D+ ALV Y ++GR E+A +F RM ++L
Sbjct: 336 SRLAL---LEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 318 VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEI 375
+SWNA+IAGY ++ KA+ +F +I + + P+ VT +++L AC Y + G EI
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-36
Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 8/260 (3%)
Query: 1 MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQ--SSPSVRHNHQLFSAVLKSCTSLAD 58
M E N SW TII G G ++EA +LF + S R F +L++ L
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR----TFVVMLRASAGLGS 239
Query: 59 ILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSG 118
G+ LH V K G + VS AL+++Y+KCG I+D +F + V WN +L+G
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 119 FACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLE 178
+A H + L+Y M + T +I++ +RL + K HA +I+ G
Sbjct: 300 YAL-HGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 179 RHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWM 238
+ +L +Y+K G + DA +VFD + K+++SWNA+I+G + A +F M
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 239 LTEPIKPNYATILNILPICA 258
+ E + PN+ T L +L C
Sbjct: 418 IAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 96/379 (25%), Positives = 176/379 (46%), Gaps = 27/379 (7%)
Query: 290 NALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMI 349
N ++ +++ G +A LF M R+L SW II G + +A LF E+ ++
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGS 220
Query: 350 WPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAY 409
+ T V +L A A L + + G+++H L+ + D V AL+ Y+KC D+E A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDAR 279
Query: 410 RTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL 469
F + + ++WNSML ++ GY+ + L L M G+ D T +I + +
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 470 REGMVKETHGYLIKTGL---LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLV 526
K+ H LI+TG ++ +T A++D Y+K ++ A NVF + ++NL+
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANT------ALVDLYSKWGRMEDARNVFDR-MPRKNLI 392
Query: 527 TFNPVISGYANCGSADEAFMTFSRIYARDLTPWNL----MIRVYAENDFPNQALSLFLKL 582
++N +I+GY N G +A F R+ A + P ++ ++ + Q +F +
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 583 -QAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD------GVRLNGALLHLY 635
+ +KP A+ ++ + + LL + + + RA F L +H
Sbjct: 453 SENHRIKPRAMHYACMIELLGREG---LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN 509
Query: 636 AKCGSIFSASKIFQCHPQK 654
+ G +A K++ P+K
Sbjct: 510 LELGR-LAAEKLYGMGPEK 527
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 6e-18
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)
Query: 1 MAEPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADIL 60
+ E + SW +II G + EAL F L + ++ N A L +C + ++
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALM 506
Query: 61 LGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFA 120
GK +H +V + G + ALL+LY +CG ++ + F D V+WNILL+G+
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYV 565
Query: 121 CSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSL-HAYVIKFGLER 179
+H + + LF M V P+ VT +L AC+R G + G H+ K+ +
Sbjct: 566 -AHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
Query: 180 HTLVGNSLTSMYAKRGLVHDAYSVFDSIE-DKDVVSWNAVISG 221
+ + + + G + +AY+ + + D W A+++
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-13
Identities = 75/315 (23%), Positives = 129/315 (40%), Gaps = 31/315 (9%)
Query: 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK-CRNIKYAFNVFQSLL------ 520
+ VK+ +G D E A + R + + LL
Sbjct: 328 DKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIK 387
Query: 521 ---------EKRNLVTFNPV--ISGYANC---GSADEAFMTFSR-IYARDLTPWNLMIRV 565
EKR L+ + + + C + EAF F++ I L+ +N+++ V
Sbjct: 388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAF-RFAKLIRNPTLSTFNMLMSV 446
Query: 566 YAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQC-HGYVIRACFDG 624
A + + AL + +Q G+K D +L+ C++ V + + H V
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506
Query: 625 VRLNGALLHLYAKCGSI---FSASKIFQCHPQK-DVVMLTAMIGGYAMHGMGKAALKVFS 680
V GAL+ A+ G + F A I + K D V+ A+I G A V +
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 681 DMLELG--VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738
+M ++PDH+ + A++ AC++AG VD E+++ I + IK TPE Y V+ +
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCS 625
Query: 739 RGGQISDAYSLVNRM 753
+ G A S+ + M
Sbjct: 626 QKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 56/270 (20%), Positives = 117/270 (43%), Gaps = 27/270 (10%)
Query: 504 AKCRNIKYAFNVFQSLLE---KRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP-- 558
AK + F VF ++ + N+ TF +I G A G +AF + + ++++ P
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 559 --WNLMIRVYAENDFPNQALSLF--LKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQC- 613
+N +I ++ ++A + +K + + PD +T+ +L+ C+ V ++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 614 ---HGYVIR---ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV----VMLTAMI 663
H Y I+ + ++ ++ G A I+ +K V V +A++
Sbjct: 603 QMIHEYNIKGTPEVYT------IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656
Query: 664 GGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723
G A ++ D + G+ V ++++ ACS+A + LE++ I K +
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKL 715
Query: 724 KPTPEQYASLVDLLARGGQISDAYSLVNRM 753
+PT +L+ L G Q+ A +++ M
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703
DVV +I GY G + ALK+F++M + G+ P+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 6e-07
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 210 KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN---YATILN 252
DVV++N +I G + + +A +LF+ M IKPN Y+ +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-05
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACA 364
D+V++N +I GY + +AL LF E+ + + P+ T L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSR----DLVSWNAIIAGYA 328
DV N L+ Y + G+ EEA LF MK R ++ +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 99/474 (20%), Positives = 176/474 (37%), Gaps = 84/474 (17%)
Query: 297 LRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNL------FCELITKEMIW 350
LR GR ++ L M+ R L+ + I +A + K F +LI
Sbjct: 381 LRDGRIKDCIDLLEDMEKRGLLDMDKI--YHAKFFKACKKQRAVKEAFRFAKLIRN---- 434
Query: 351 PDSVTLVSLLPACAYLKNLKVGKEIHGYF-----LRHPYLEEDAAVGNALVSFYAKCSDM 405
P T L+ CA ++I G ++ L+ D + L+S AK +
Sbjct: 435 PTLSTFNMLMSVCAS------SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 406 EAAYRTF-LMI---CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTI 461
+A + F M+ ++ ++ +++D + +G ++ M + ++PD + +
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 462 IHFCTT---------VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYA 512
I C VL E M ETH D +H A++ A A + A
Sbjct: 549 ISACGQSGAVDRAFDVLAE-MKAETHPI---------DPDHITVGALMKACANAGQVDRA 598
Query: 513 FNVFQSLLE---KRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP----WNLMIRV 565
V+Q + E K + ++ + G D A + + + + P ++ ++ V
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 566 YAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGV 625
++A + + QG+K V+ SL+ CS + +A
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK----------KA----- 703
Query: 626 RLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685
L LY SI K+ + V + A+I AL+V S+M L
Sbjct: 704 ------LELYEDIKSI----KL-----RPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR 739
G+ P+ + + +L A D GL++ S K GIKP + L R
Sbjct: 749 GLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 73/324 (22%), Positives = 120/324 (37%), Gaps = 81/324 (25%)
Query: 108 DPVTWNILLSGFACSHVDD-ARVMNLFYNMHVRDQP-KPNSVTVAIVLSACARLGGIFAG 165
D V +N L+S AC R ++ M P P+ +TV ++ ACA G +
Sbjct: 541 DRVVFNALIS--ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 166 K----SLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDV----VSWNA 217
K +H Y IK E +T+ NS + ++G A S++D ++ K V V ++A
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCS----QKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 218 VISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVL 277
++ L AF + + IK + +++ C
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-------------------- 694
Query: 278 RRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL---VS-WNAIIAGYASNDEW 333
NA ++A L+ +KS L VS NA+I ++
Sbjct: 695 -----------SNA--------KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 334 LKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG-------------------KE 374
KAL + E+ + P+++T LL A + VG +
Sbjct: 736 PKALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 375 IHGYFLRHPYLEEDAAVGNALVSF 398
I G LR E+ A+G +VSF
Sbjct: 795 ITGLCLRR--FEKACALGEPVVSF 816
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 419 DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIH-FC 465
D++++N+++D + + G + L L N M GI+P+ T +I C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD 690
V +I G G + AL++F +M E G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGV 687
V ++I GY G + AL++F +M E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 3 EPNAKSWITIINGFCRDGLHKEALSLF 29
+P+ ++ T+I+G CR G EA+ L
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 69/285 (24%), Positives = 129/285 (45%), Gaps = 35/285 (12%)
Query: 111 TWNILLSGFACSHVDDA----RVMNLFYNMHVRDQP-KPNSVTVAIVLSACARLGGIFAG 165
T+N+L+S C+ D RV+ L V++ K + ++S CA+ G + A
Sbjct: 439 TFNMLMS--VCASSQDIDGALRVLRL-----VQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 166 -KSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDV----VSWNAVIS 220
+ H V G+E + +L A+ G V A+ + + K+V V +NA+IS
Sbjct: 492 FEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 221 GLSENKVLGDAFRLFSWMLTE--PIKPNYATILNILPICASLDEDVGYFFGREIHCY-VL 277
++ + AF + + M E PI P++ T+ ++ CA+ + R Y ++
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-----VDRAKEVYQMI 605
Query: 278 RRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSR----DLVSWNAII--AGYASND 331
+ V V+ + G + A ++ MK + D V ++A++ AG+A +
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 332 EWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIH 376
+ KA + + K+ I +V+ SL+ AC+ KN K E++
Sbjct: 666 D--KAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 108 DPVTWNILLSGFA-CSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACAR 158
D VT+N L+ G+ V++A + LF M R KPN T +I++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEA--LKLFNEMKKRGI-KPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 875 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.32 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.32 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.57 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.3 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.23 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.26 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.07 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.81 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.71 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.65 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.53 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.42 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.7 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.65 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.99 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.97 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 94.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.59 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 94.58 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.47 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.31 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.51 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.25 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.06 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.79 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.97 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.6 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.77 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.35 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.31 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.12 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.93 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.42 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.23 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.8 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.6 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.5 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.45 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 87.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.29 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.66 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.58 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.55 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.41 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.32 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.0 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.91 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.59 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.86 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.79 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.37 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.05 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.62 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.52 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.06 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.85 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.57 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.38 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.13 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.25 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-110 Score=975.09 Aligned_cols=725 Identities=31% Similarity=0.586 Sum_probs=710.3
Q ss_pred CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 106 NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.++..++|.++.+|++.| .+++|+.+|++|.+.| ++|+..+|..++++|.+.+.++.+.++++.+.+.|..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g-~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHG-QLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 567888999999999999 9999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
+|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+ +
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~---~ 202 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP---D 202 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
+..++++|..+.+.|..+ |..++++|+.+|+++|++++|.++|+.|++||.++||++|.+|++.|++++|+++|++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 203 LARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred hhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999998877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHH
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNS 425 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 425 (875)
.| +.||..||+.++.+|++.|+++.+.+++..+.+.|+.++.. +|++|+.+|+++|++++|.++|++|..+|..+||+
T Consensus 282 ~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 282 LS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS-VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred cC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99 99999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++++.+.+.|+ .++..+++.|+++|++
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL---ISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 506 CRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
+|++++|.++|++|..+ |..+|++++.+| ++.|+.++|+.+|++|..
T Consensus 437 ~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~-------------------------------~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 437 CKCIDKALEVFHNIPEK-DVISWTSIIAGL-------------------------------RLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred cCCHHHHHHHHHhCCCC-CeeeHHHHHHHH-------------------------------HHCCCHHHHHHHHHHHHh-
Confidence 99999999999999876 899999999999 899999999999999986
Q ss_pred CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHH
Q 002834 586 GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIG 664 (875)
Q Consensus 586 g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 664 (875)
++.||..||..++.+|++.|.++.+.++|..+.+.|+. +..++++|+++|+++|++++|+++|+.+ .+|+.+||+||.
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~ 562 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLT 562 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999999 899999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH
Q 002834 665 GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS 744 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 744 (875)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+|+.|+..+|++|+++|+++|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999977999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 745 DAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 745 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
+|.+++++|+.+||..+|++|+++|+.+|+.+.|+.+++++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCCccCC
Q 002834 825 KKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI 875 (875)
Q Consensus 825 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 875 (875)
+|+||+|||+++|++|.|++||++||+.++||.+|+.|..+|++.||+||.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 999999999999999999999999999999999999999999999999983
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-89 Score=801.63 Aligned_cols=676 Identities=27% Similarity=0.479 Sum_probs=650.0
Q ss_pred CCCcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhh
Q 002834 3 EPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSK 82 (875)
Q Consensus 3 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (875)
.|+..++|.+|+++++.|++++|..+|+.|.+.+ ..|+..+|..++++|.+.+.+..+.++++.+.+.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4677789999999999999999999999999865 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCc
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGI 162 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (875)
+|+.+|++.|+++.|.++|++|++||+++||++|.+|++.| ++++|+++|++|...| +.||..||+.+|++|+..+++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999 9999999999999999 999999999999999999999
Q ss_pred chhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCC
Q 002834 163 FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEP 242 (875)
Q Consensus 163 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 242 (875)
..+.+++..|.+.|+.||..++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHH
Q 002834 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNA 322 (875)
Q Consensus 243 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (875)
+.||..||+.++.+|+..+ +...+++++..+.+.|..+ |..+|++|+.+|+++|++++|.++|+.|.+||.++||.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g---~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLG---DERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 9999999999999999999 8999999999999998877 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 002834 323 IIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC 402 (875)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 402 (875)
+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|..++.. ++++|+++|+++
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV-VANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHc
Confidence 9999999999999999999999999 99999999999999999999999999999999999998888 999999999999
Q ss_pred CChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHH
Q 002834 403 SDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLI 482 (875)
Q Consensus 403 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 482 (875)
|++++|.++|++|.++|+.+||++|.+|+++|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+.+.+.+++..+.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 699999999999999999999999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHH
Q 002834 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLM 562 (875)
Q Consensus 483 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 562 (875)
+.|+ .++..++++++++|+++|++++|.++|+.+ .||..+|+++|.+|
T Consensus 517 ~~g~---~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~--------------------------- 564 (857)
T PLN03077 517 RTGI---GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY--------------------------- 564 (857)
T ss_pred HhCC---CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH---------------------------
Confidence 9999 999999999999999999999999999998 56999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHH-HhcCC-CchHHHHHHHHhHhcCC
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVI-RACFD-GVRLNGALLHLYAKCGS 640 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~ 640 (875)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.+. +.|.. +...|+.++++|+++|+
T Consensus 565 ----~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 565 ----VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred ----HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999998 66877 99999999999999999
Q ss_pred HHHHHHHhccCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 641 IFSASKIFQCHP-QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 641 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+... |..+...|...|++++|.++.+.|+
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999996 69999999999999999999999999999887 5666554 5555669999999999999999998
Q ss_pred HHhCCCCChh
Q 002834 719 KVQGIKPTPE 728 (875)
Q Consensus 719 ~~~~~~p~~~ 728 (875)
+ .|+++++.
T Consensus 719 ~-~g~~k~~g 727 (857)
T PLN03077 719 E-NGLTVDPG 727 (857)
T ss_pred H-cCCCCCCC
Confidence 8 78888764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-80 Score=706.86 Aligned_cols=526 Identities=30% Similarity=0.534 Sum_probs=512.8
Q ss_pred CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHH
Q 002834 314 SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGN 393 (875)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (875)
.++..+|+.+|.++.+.|++++|+++|+.|...+.+.||..||+.++.+|.+.++++.+.+++..+.+.|+.++.. +++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHH
Confidence 3577899999999999999999999999999875578999999999999999999999999999999999999877 999
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhh
Q 002834 394 ALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 473 (875)
.|+.+|+++|+++.|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
+.+++..+.+.|+ .++..+++.|+++|+++|++++|.++|++|..+ |+++|++++.+|
T Consensus 243 ~~~l~~~~~~~g~---~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y------------------ 300 (697)
T PLN03081 243 GQQLHCCVLKTGV---VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGY------------------ 300 (697)
T ss_pred HHHHHHHHHHhCC---CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHH------------------
Confidence 9999999999999 899999999999999999999999999999876 888999988888
Q ss_pred CCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHH
Q 002834 554 RDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALL 632 (875)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 632 (875)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.++.|.++|..+.+.|+. +..++++|+
T Consensus 301 -------------~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 301 -------------ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred -------------HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 713 IFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+..|+..+|++|+.+|..+|+++.|+.+++++++++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 002834 793 IGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTI 872 (875)
Q Consensus 793 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 872 (875)
+..|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||..||+.++||.+|+.|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 002834 873 SEI 875 (875)
Q Consensus 873 ~~~ 875 (875)
||.
T Consensus 608 ~~~ 610 (697)
T PLN03081 608 AEE 610 (697)
T ss_pred CCc
Confidence 983
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=582.41 Aligned_cols=475 Identities=21% Similarity=0.340 Sum_probs=459.0
Q ss_pred CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 106 NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.++..+|+.+|.+|.+.| ++.+|+++|+.|...+++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 356779999999999999 9999999999999876578999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+ .
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~---~ 239 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG---S 239 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
...++++|..+.+.+..+ |..++++|+.+|+++|++++|.++|+.|.++|+++||++|.+|++.|++++|+++|++|.+
T Consensus 240 ~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHH
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNS 425 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 425 (875)
.| +.||..||++++.+|++.|+++.|.+++..+.+.|+.++.. ++++|+++|+++|++++|.++|++|.++|+.+||+
T Consensus 319 ~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 319 SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred cC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99 99999999999999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHH-hcCCCCCCchhHHHHHHHHHH
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIK-TGLLLGDTEHNIGNAILDAYA 504 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~ 504 (875)
||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|..+++.++|+.|.+ .|+ .|+..+|++++++|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~---~p~~~~y~~li~~l~ 473 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI---KPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC---CCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 588 999999999999999
Q ss_pred hcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC---CccHHHHHHHHHHcCCchHHHHHHHH
Q 002834 505 KCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD---LTPWNLMIRVYAENDFPNQALSLFLK 581 (875)
Q Consensus 505 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 581 (875)
+.|++++|.++++++...|+..+|++++.+|...|+++.|..+++++...+ ..+|..|++.|++.|++++|.+++++
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886544 44699999999999999999999999
Q ss_pred HHHCCCCCC
Q 002834 582 LQAQGMKPD 590 (875)
Q Consensus 582 m~~~g~~p~ 590 (875)
|.+.|++..
T Consensus 554 m~~~g~~k~ 562 (697)
T PLN03081 554 LKRKGLSMH 562 (697)
T ss_pred HHHcCCccC
Confidence 999998643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=579.45 Aligned_cols=475 Identities=17% Similarity=0.212 Sum_probs=426.8
Q ss_pred CCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHH
Q 002834 39 VRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGH-ISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLS 117 (875)
Q Consensus 39 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 117 (875)
..++...|..++..|++.|++..|.+++++|.+.|+ +++..+++.++.+|.+.|.+++|..+|+.|+.|+..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456677899999999999999999999999999885 5778888889999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCCh
Q 002834 118 GFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV 197 (875)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 197 (875)
+|++.| ++++|.++|++|.+.| +.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 446 a~~k~g-~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQ-DIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCc-CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999 9999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccCC----CCCeeeHHHHHHHHHcCCCcchHHHHHHHHHh--CCCCCChhhHHhHHHHhccCCccccccchhH
Q 002834 198 HDAYSVFDSIE----DKDVVSWNAVISGLSENKVLGDAFRLFSWMLT--EPIKPNYATILNILPICASLDEDVGYFFGRE 271 (875)
Q Consensus 198 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 271 (875)
++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.|
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-------------------------- 577 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-------------------------- 577 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC--------------------------
Confidence 99999999996 38999999999999999999999999999976 56777
Q ss_pred HHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC----CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 002834 272 IHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS----RDLVSWNAIIAGYASNDEWLKALNLFCELITKE 347 (875)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (875)
|..+|++|+.+|++.|++++|.++|+.|.+ |+..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 578 -------------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 578 -------------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred -------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 788899999999999999999999999985 677999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhc----CCCCcchH
Q 002834 348 MIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMI----CRRDLISW 423 (875)
Q Consensus 348 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 423 (875)
+.||..||+.++.+|++.|+++.|.+++..|.+.|+.++.. +|++||.+|+++|++++|.++|++| ..||..+|
T Consensus 645 -v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~-tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 645 -VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999 46899999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 002834 424 NSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAY 503 (875)
Q Consensus 424 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 503 (875)
|+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+.+.|.++|..|.+.|+ .|+..+|++++.++
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi---~pd~~tynsLIglc 799 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI---KPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999998765
Q ss_pred HhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
.+ .+++|.++.+.+.. |+. .... ...+..+.|+.+|++|.
T Consensus 800 ~~--~y~ka~~l~~~v~~------f~~-g~~~-------------------------------~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 800 LR--RFEKACALGEPVVS------FDS-GRPQ-------------------------------IENKWTSWALMVYRETI 839 (1060)
T ss_pred HH--HHHHHhhhhhhhhh------hhc-cccc-------------------------------cccchHHHHHHHHHHHH
Confidence 42 35555544332221 110 0000 22334567999999999
Q ss_pred HCCCCCCcchHhcHHH
Q 002834 584 AQGMKPDAVTIMSLLP 599 (875)
Q Consensus 584 ~~g~~p~~~~~~~ll~ 599 (875)
+.|+.||..||..++.
T Consensus 840 ~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLG 855 (1060)
T ss_pred HCCCCCCHHHHHHHHH
Confidence 9999999888876663
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-64 Score=568.83 Aligned_cols=528 Identities=17% Similarity=0.213 Sum_probs=458.9
Q ss_pred CCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCC-CCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHH
Q 002834 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGL-ERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVIS 220 (875)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 220 (875)
-.++...|..++..+++.|+++.|.++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999995 5777788899999999999999999999999999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcC
Q 002834 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFG 300 (875)
Q Consensus 221 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 300 (875)
+|++.|+++.|.++|++|.+.|+.| |..+|+.||.+|++.|
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~p---------------------------------------D~~tynsLI~~y~k~G 486 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKA---------------------------------------DCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCC---------------------------------------CHHHHHHHHHHHHhCc
Confidence 9999999999999999999999988 7888999999999999
Q ss_pred ChhHHHHHhhhcC----CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHH
Q 002834 301 RTEEAELLFRRMK----SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIH 376 (875)
Q Consensus 301 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 376 (875)
++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.+++
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998 4899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHh--cCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC----CCcchHHHHHHHHhccCChhHHHHHHHHHHHCC
Q 002834 377 GYFLR--HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR----RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEG 450 (875)
Q Consensus 377 ~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 450 (875)
..|.+ .++.|+.. +|++++.+|++.|++++|.++|+.|.+ ++..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 566 ~eM~~~~~gi~PD~v-TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 566 AEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHhcCCCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 99987 56777777 999999999999999999999999954 567899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCccc
Q 002834 451 IRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE---KRNLVT 527 (875)
Q Consensus 451 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~ 527 (875)
+.||..||+.+|.+|++.|+.+.|.++|+.|.+.|+ .|+..+|+.+|.+|+++|++++|.++|++|.. .||..+
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~---~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999875 378889
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~ 607 (875)
|++||.+| ++.|++++|+++|++|.+.|+.||..||..++.+|++.|++
T Consensus 722 yN~LI~gy-------------------------------~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 722 MNALITAL-------------------------------CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHHH-------------------------------HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99998888 77777777777777777777778888888888888888888
Q ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHh----HhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFD-GVRLNGALLHLY----AKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 682 (875)
+.|.++|..+.+.|+. +..++++++.++ .+++...++...|+.+...+... ..+.|+.+|++|
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~------------w~~~Al~lf~eM 838 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK------------WTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc------------hHHHHHHHHHHH
Confidence 8888888888777777 777777777653 33333333333343322222223 345799999999
Q ss_pred HHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCCH
Q 002834 683 LELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEADC 759 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~ 759 (875)
++.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|+++++++++. .++|..++++|. +.|+.
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999888888899888888887755 46777888999999998532 468999999993 45543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=414.80 Aligned_cols=791 Identities=12% Similarity=0.022 Sum_probs=543.8
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHH
Q 002834 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKAL 84 (875)
Q Consensus 5 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (875)
+...+-.....+...|++++|+..|++..+.. ..+...+..+...+...|+++.|...+..+.+.+. ++......+
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 96 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD---PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLL 96 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHH
Confidence 33344444555556666666666666666542 22334445555556666666666666666655543 233333444
Q ss_pred HHHHHccCCchHHHHhhccCCC----CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccC
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDN----TDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLG 160 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 160 (875)
...+.+.|++++|...+..... .....+..+...+...| ++++|...|+++.+.. +.+...+..+...+...|
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~ 173 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG-QLELAQKSYEQALAID--PRSLYAKLGLAQLALAEN 173 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCC
Confidence 5555555555555555544431 11223334444444555 5555555555555443 233344444555555555
Q ss_pred CcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHH
Q 002834 161 GIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSW 237 (875)
Q Consensus 161 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~ 237 (875)
+++.|..+++.+.+.. +++...+..+...+...|++++|...|++..+ .+...+..++..+...|++++|...++.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554432 23334444455555555555555555554432 1233344444444445555555555444
Q ss_pred HHhCCC--------------------------------CCChhh-HHhHHHHhccCCccccccchhHHHHHHHHhcccCC
Q 002834 238 MLTEPI--------------------------------KPNYAT-ILNILPICASLDEDVGYFFGREIHCYVLRRAELIA 284 (875)
Q Consensus 238 m~~~g~--------------------------------~p~~~t-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (875)
+.+... .|+... +..+-..+...+ +...+...+..+.+... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~~~~~p--~ 327 (899)
T TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG---NLEQAYQYLNQILKYAP--N 327 (899)
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC--C
Confidence 443221 122111 111111222333 44555555555544322 2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 456667777888888888888888877654 345567777888888888888888888887653 224455666666
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhH
Q 002834 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQ 438 (875)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 438 (875)
.+...|+.+.|...+..+.+..... ......++..|.+.|++++|.++++.+.. .+..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPEL--GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 7778888888888888877665322 22556677888888888888888887743 356778888888899999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 439 FLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 439 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
|.+.|+++.+.. +.+...+..+...+...|+++.+.+.++.+.+.. +.+...+..+...+.+.|+.++|...+++
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID----PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887753 2234456667777888888999999998888765 55677788888888889999999999988
Q ss_pred hccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc---cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 519 LLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLT---PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 519 ~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
+... | +...+..++..|...|++++|..+++++...++. .|..++.+|.+.|++++|+..|+++.+.. +.+...
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 7654 3 5567778888888999999999999888654433 38888899999999999999999887653 234456
Q ss_pred HhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 594 IMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 594 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
+..+...+...|+.+.|..++..+.+..+.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...+...|
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 777778888889999999999988888777888888899999999999999999988765 45667888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLV 750 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 750 (875)
++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.+.+
T Consensus 718 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 718 DYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999998885 466677777888899999999999999988773 3345668888899999999999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 751 NRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 751 ~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
+++. .++++.++..+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++.+.+.+
T Consensus 794 ~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 794 RTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8884 44467888889898988888 789999999999999999999999999999999999999988887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=408.24 Aligned_cols=790 Identities=11% Similarity=0.008 Sum_probs=605.0
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCC--------------------------------CChhhHHHHHHH
Q 002834 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVR--------------------------------HNHQLFSAVLKS 52 (875)
Q Consensus 5 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------~~~~~~~~ll~~ 52 (875)
+...|..+..++.+.|++++|+..|+++...+|... .+...+..+...
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA 134 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 334778888999999999999999998887643210 011223333344
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCC---CCchhHHHHHHHHhcCCCChhHH
Q 002834 53 CTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDN---TDPVTWNILLSGFACSHVDDARV 129 (875)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~a 129 (875)
+...|++..|...++.+.+.. +.+...+..+...+...|++++|.++++++.. ++...|..+...+...| ++++|
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A 212 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG-NIELA 212 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC-CHHHH
Confidence 445555555555555555433 22344555555555666666666666655421 23344555555555555 66666
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC
Q 002834 130 MNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED 209 (875)
Q Consensus 130 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (875)
...|++..... +.+..++..+...+...|+++.|...++.+.+... .+...+......+...|++++|...|+++.+
T Consensus 213 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 213 LAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666665544 34455555555666666666666666666655432 2222333333344556666666666666543
Q ss_pred CCe---eeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-hhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCc
Q 002834 210 KDV---VSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN-YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIAD 285 (875)
Q Consensus 210 ~~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (875)
.+. ..+..+...+...|++++|...++...+. .|+ ...+..+.......+ ....+...+..+..... .+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~--~~ 362 (899)
T TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLG---RVDEAIATLSPALGLDP--DD 362 (899)
T ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCC--CC
Confidence 221 22333445567789999999999888765 343 344444555556666 67777777776665432 26
Q ss_pred hhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 002834 286 VSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPA 362 (875)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~ 362 (875)
..++..+...+.+.|++++|.++|+.+.+ .+...|..+...+...|++++|++.|+.+.+.. . ........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-P-ELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-C-cchhhHHHHHHH
Confidence 77889999999999999999999998764 345567788888999999999999999998765 1 223455567778
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHH
Q 002834 363 CAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQF 439 (875)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 439 (875)
+.+.|+.+.+..++..+.+.. ++...++..+...|...|++++|.+.|+++.. .+...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988754 23333889999999999999999999998743 3556788889999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 002834 440 LNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSL 519 (875)
Q Consensus 440 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 519 (875)
.+.|+++...+ +.+..++..+...+.+.|+.+.+...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN----PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998864 3456678888888999999999999999998875 566777888999999999999999999998
Q ss_pred ccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchH
Q 002834 520 LEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTI 594 (875)
Q Consensus 520 ~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 594 (875)
... | +...|..+...+...|++++|...++++...++ ..+..+..+|.+.|++++|...|+++.+.. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 764 3 677899999999999999999999999865543 348899999999999999999999998753 3346678
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCCh
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMG 672 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 672 (875)
..+...+...|+++.+..+++.+....+.+...+..+...+.+.|++++|.+.|+.+.. |+..++..++.++...|++
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 88888999999999999999999999888888899999999999999999999998764 6667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHh
Q 002834 673 KAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 673 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
++|.+.++++.+. .+.+...+..+...|...|++++|.++|+++.+. .+++...+..++..+...|+ ++|+.++++
T Consensus 753 ~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 9999999999986 3556777888888999999999999999999872 33456689999999999999 889999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+. ..| ++..+..+..++...|+++.|...++++++.+|.++.++..++++|.+.|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 74 444 457788888999999999999999999999999999999999999999999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-25 Score=267.83 Aligned_cols=649 Identities=11% Similarity=0.020 Sum_probs=441.3
Q ss_pred HHHHHHHccCCchHHHHhhccCC--CC-CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhcc
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQVD--NT-DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARL 159 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 159 (875)
..+..+...++.+.|.+.++++. .| ++..+..+...+.+.| +.++|...+++..+.. |+...+..+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~---P~~~~~~~~~~----- 103 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLA---PDSNAYRSSRT----- 103 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---CCChHHHHHHH-----
Confidence 34455666667777777666652 22 4555566666666667 7777777777776644 33322211111
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHH--H--HHHHHHcCCCcchHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWN--A--VISGLSENKVLGDAFRLF 235 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~--li~~~~~~g~~~~a~~l~ 235 (875)
.+.. ..|+......+...+.+.|++++|.+.|+.+.+.+..... . ........|+.++|.+.|
T Consensus 104 ------------~~~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 104 ------------TMLL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ------------HHHh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0111 1233333455566788889999999988887653222211 1 111122458888999999
Q ss_pred HHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCC
Q 002834 236 SWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSR 315 (875)
Q Consensus 236 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 315 (875)
+++.+. .|+ +...+..+...+...|+.++|++.|+++...
T Consensus 171 ~~ll~~--~P~--------------------------------------~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~ 210 (1157)
T PRK11447 171 QRLNAD--YPG--------------------------------------NTGLRNTLALLLFSSGRRDEGFAVLEQMAKS 210 (1157)
T ss_pred HHHHHh--CCC--------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Confidence 988875 454 6677788888888899999999999887542
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDS-VTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNA 394 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (875)
... +...+...+..+...+ ..|+. ..+...+..+........+...+.........+.. ....
T Consensus 211 ~~~-------------~~~aa~~~~~~l~~~~-~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~--~~~~ 274 (1157)
T PRK11447 211 PAG-------------RDAAAQLWYGQIKDMP-VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF--RARA 274 (1157)
T ss_pred CCc-------------hHHHHHHHHHHHhccC-CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch--HHHH
Confidence 211 1111222222222221 11111 11222222222222333444444443333222221 2234
Q ss_pred HHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHH----------
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILT---------- 460 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~---------- 460 (875)
....+...|++++|...|++... .+...+..+...+.+.|++++|+..|++.++...... ...+..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45667778888888888887633 3566788888888888899999988888876532211 111111
Q ss_pred --HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhh
Q 002834 461 --IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYA 536 (875)
Q Consensus 461 --ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~ 536 (875)
.-..+...|+++.|...++.+.+.. +.+...+..+...+...|++++|++.|++.... | +...+..+...|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1234567788889999998888875 455667778888999999999999999988764 4 4455666666664
Q ss_pred cCCChHHHHHHHHhhhcCC------------CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhc
Q 002834 537 NCGSADEAFMTFSRIYARD------------LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQ 603 (875)
Q Consensus 537 ~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 603 (875)
.++.++|+..++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 457888988887764332 122566778888999999999999998875 454 3456677778899
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC----Ch---------hhHHHHHHHHHHcC
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK----DV---------VMLTAMIGGYAMHG 670 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g 670 (875)
.|+.++|...++.+.+..+.++.....+...+.+.|+.++|...++.+... +. ..+..+...+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999999877777777777777788899999999999988642 11 11234567788999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
+.++|+.+++. .+++...+..+...+.+.|+.++|++.|+++.+ ..|+ ...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999882 355556677778899999999999999999987 4565 55888999999999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc------cHHHHHHHHHhcCCchhHHHHHHHH-H
Q 002834 750 VNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG------NYVVMSNLYAADARWDGVVEIRKLM-K 820 (875)
Q Consensus 750 ~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~ 820 (875)
++... ..|+ ...+..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++++|++.++.. .
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99886 4554 466777888888999999999999999999877654 5566799999999999999975544 4
Q ss_pred hCCC
Q 002834 821 TRDL 824 (875)
Q Consensus 821 ~~~~ 824 (875)
..|+
T Consensus 740 ~~~~ 743 (1157)
T PRK11447 740 ASGI 743 (1157)
T ss_pred hcCC
Confidence 4444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-23 Score=238.45 Aligned_cols=668 Identities=10% Similarity=-0.033 Sum_probs=393.0
Q ss_pred hHHHHHHHHh--hcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHH
Q 002834 8 SWITIINGFC--RDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALL 85 (875)
Q Consensus 8 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (875)
+|.-++.+.. ..|++++|+..|+++++..|.. ..++..|.+++...|..++|....++.++.. |+...|..++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH
Confidence 3444444444 4499999999999999976543 5678999999999999999999999999874 4444444434
Q ss_pred HHHHccCCchHHHHhhccCCC--CC-chhHHHHHHH--------HhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHH-H
Q 002834 86 NLYAKCGVIDDCYKLFGQVDN--TD-PVTWNILLSG--------FACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIV-L 153 (875)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-l 153 (875)
..+ ++.++|..+++++.. |+ ...+..+... |.+ .++|.+.++ .+... ..|++.+.... .
T Consensus 119 a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~-~~~~~~vL~L~~~ 189 (987)
T PRK09782 119 AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFA-ASPEGKTLRTDLL 189 (987)
T ss_pred HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhC-CCCCcHHHHHHHH
Confidence 333 889999999999843 32 3333333333 544 456666665 33333 34455555555 8
Q ss_pred HHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHh-cCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHH
Q 002834 154 SACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAK-RGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAF 232 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (875)
+.+...++++++..++..+.+.+ ..+......|-.+|.. .++ +.+..++....+.+...+..+...+.+.|+.++|.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999997 3445556777778888 477 88999987655568888999999999999999999
Q ss_pred HHHHHHHhCCCC-CChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhh
Q 002834 233 RLFSWMLTEPIK-PNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRR 311 (875)
Q Consensus 233 ~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (875)
++++++...-.. |...++...+........-......+++... -....-.++..+.+.++++.|.++...
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN---------RQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH---------HHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999998765433 6666666665544433200000001111000 122334457788888888877777442
Q ss_pred cCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhc-CC-CCchh
Q 002834 312 MKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRH-PY-LEEDA 389 (875)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 389 (875)
-+ .+. ..-.-..+....+...++...+..|.+.. +-+......+--...+.|+.++|.+++...... +- ..+..
T Consensus 339 ~~-~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 339 LP-ANE-MLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred CC-cch-HHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 22 222 11111122233466677777777776652 123333333333344566666666666665552 11 11122
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 002834 390 AVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL 469 (875)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 469 (875)
....|+..|.+.+.+....+...-....+...- +.-.|+..++...+......
T Consensus 415 -l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a-------------------- 467 (987)
T PRK09782 415 -LMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRL-------------------- 467 (987)
T ss_pred -HHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHh--------------------
Confidence 344555666555553333322222111111111 11111221111111111110
Q ss_pred chhhHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcccHHHHHHHhhcCCChHHHHH
Q 002834 470 REGMVKETHGYLIKTGLLLGDT--EHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KRNLVTFNPVISGYANCGSADEAFM 546 (875)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~ 546 (875)
... .++ +...+..+..++.. ++.++|...+.+... .|+......+...+...|++++|..
T Consensus 468 ------------l~~----~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 468 ------------LGD----MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred ------------ccc----CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 000 022 33444555555544 566666665554443 2442222222222323444444444
Q ss_pred HHHhhhcCCCc--cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCC
Q 002834 547 TFSRIYARDLT--PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDG 624 (875)
Q Consensus 547 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 624 (875)
.|+++....+. .+..+...+.+.|+.++|...+++..+.. |+.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~--------------------------------- 575 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGD--------------------------------- 575 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Ccc---------------------------------
Confidence 44433221111 12333333344444444444444443321 211
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
...+..+...+...|++++|+..+++..+ ..|+...+..+..++.+.
T Consensus 576 -------------------------------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 576 -------------------------------NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQR 622 (987)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHC
Confidence 11111222233345788888888888777 456666777777788888
Q ss_pred CcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
|+.++|...+++..+ ..|+. ..+..+..++...|++++|++.+++.. ..| ++..+..+..++...|+++.|+..
T Consensus 623 G~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888766 45653 477777778888888888888887764 445 457777888888888888888888
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
++++++++|+++.+....+++..+..+++.|.+-+++.
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888865543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-24 Score=253.92 Aligned_cols=666 Identities=10% Similarity=-0.018 Sum_probs=393.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCC--CCchh------------
Q 002834 46 FSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDN--TDPVT------------ 111 (875)
Q Consensus 46 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~------------ 111 (875)
+....+.+-..++.+.|.+.+.++.... +.++.++..+...+.+.|+.++|.+.+++..+ |+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4444555666777777777777776653 33566777777777888888888887777643 22211
Q ss_pred -----HHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcch-HHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 112 -----WNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVT-VAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 112 -----~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.-.+...+...| ++++|+..|+.+.+.+ +|+... ...+.......++.++|...++.+.+.. +.+...+.
T Consensus 110 ~~~~~~l~~A~ll~~~g-~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 110 PEGRQALQQARLLATTG-RTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred CchhhHHHHHHHHHhCC-CHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 122233566778 8999999999887765 444321 1112222234588888888888888875 44566777
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeH---HHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSW---NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDE 262 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 262 (875)
.+...+...|+.++|++.|+++........ ..........+....+...+...... .|+
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~--~p~---------------- 247 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQV--FSD---------------- 247 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHH--CCC----------------
Confidence 888888888999999888888754221100 00001111112222233333222211 111
Q ss_pred cccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHH
Q 002834 263 DVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNL 339 (875)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 339 (875)
......+...+........ .|+. ........+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..
T Consensus 248 ~~~~~~A~~~L~~~~~~~~-dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLA-DPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0011111122211111111 1111 112334556667777777777776653 3 455666777777777777777777
Q ss_pred HHHHHHcCCCCCChh---hHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC
Q 002834 340 FCELITKEMIWPDSV---TLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC 416 (875)
Q Consensus 340 ~~~m~~~~~~~pd~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 416 (875)
|++..+.. |+.. .+..++... .......+...+.+.|++++|...|+++.
T Consensus 326 l~~Al~~~---p~~~~~~~~~~ll~~~------------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 326 FEKALALD---PHSSNRDKWESLLKVN------------------------RYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHhC---CCccchhHHHHHHHhh------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77776644 3321 111111000 00011122334445555666666555542
Q ss_pred C---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchhhHHHHHHHHHHhcCC-----
Q 002834 417 R---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS-ITILTIIHFCTTVLREGMVKETHGYLIKTGLL----- 487 (875)
Q Consensus 417 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----- 487 (875)
. .+...+..+...+...|++++|++.|++.++.. |+. ..+..+...+ ..++.+++..+++.+......
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 233444555555666666666666666655432 222 2222222222 223344444444332211000
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHH
Q 002834 488 LGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLM 562 (875)
Q Consensus 488 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l 562 (875)
........+..+...+...|++++|.+.|++.... | +...+..+...|.+.|++++|...++++...++.. +..+
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00011123445666777888888888888877664 4 44566677778888888888888888875543332 4445
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHH
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIF 642 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 642 (875)
...+.+.+++++|+..++.+......++...+.. .+ .......+...+...|+.+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l------~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL------QSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH------hhhHHHHHHHHHHHCCCHH
Confidence 5556778888888888776543221111100000 00 0011234567788899999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhC
Q 002834 643 SASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQG 722 (875)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 722 (875)
+|..+++..+ .+...+..+...+...|+.++|+..|++..+.. +.+...+..+...+...|+.++|.+.++.+.+
T Consensus 591 eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--- 665 (1157)
T PRK11447 591 EAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--- 665 (1157)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---
Confidence 9999998433 455677888999999999999999999999852 33466788888899999999999999998765
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhc---ccC
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-------DCNVWGTLLGACRIHHEVELGRVVANRLFE---MEA 790 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p 790 (875)
..|+ ...+..++.++...|++++|.++++++. ..| +...+..+...+...|+.++|+..+++++. +.|
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4555 4467778899999999999999999974 222 124556667788899999999999999985 456
Q ss_pred CCCccH
Q 002834 791 DNIGNY 796 (875)
Q Consensus 791 ~~~~~~ 796 (875)
..|...
T Consensus 746 ~~p~~~ 751 (1157)
T PRK11447 746 TRPQDN 751 (1157)
T ss_pred CCCCCc
Confidence 555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-23 Score=232.27 Aligned_cols=623 Identities=11% Similarity=0.011 Sum_probs=374.1
Q ss_pred cCCchHHHHhhccCCC--C-CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhh
Q 002834 91 CGVIDDCYKLFGQVDN--T-DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKS 167 (875)
Q Consensus 91 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 167 (875)
.|++++|...|+...+ | ++..+..+.+.|...| +.++|+..+++..+.. |+...|..++..+ ++++.|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g-~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFG-HDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHH
Confidence 4777777777776532 2 3455667777777777 7777777777777754 4444444444222 77777777
Q ss_pred HHHHHHHhCCCCCcchhhHHHHH--------hHhcCChhHHHHHhccCCCCC--eeeHHHH-HHHHHcCCCcchHHHHHH
Q 002834 168 LHAYVIKFGLERHTLVGNSLTSM--------YAKRGLVHDAYSVFDSIEDKD--VVSWNAV-ISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~l~~ 236 (875)
+++++.+.. +-+..++..+... |.+.+....+++ .+...|+ ....... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 777777765 3334455555554 666666666665 3333343 3333333 678888888888999998
Q ss_pred HHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHh-cCChhHHHHHhhhcCCC
Q 002834 237 WMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLR-FGRTEEAELLFRRMKSR 315 (875)
Q Consensus 237 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 315 (875)
++.+.+.. +..-...|...|.. .++ +.+..+++.....
T Consensus 207 ~L~k~~pl----------------------------------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~ 245 (987)
T PRK09782 207 EARQQNTL----------------------------------------SAAERRQWFDVLLAGQLD-DRLLALQSQGIFT 245 (987)
T ss_pred HHHhcCCC----------------------------------------CHHHHHHHHHHHHHhhCH-HHHHHHhchhccc
Confidence 88887432 33334444455555 355 7777776654445
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChh-hHHHHHHHHHhcCCCCchhhHHHH
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLK-VGKEIHGYFLRHPYLEEDAAVGNA 394 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~ 394 (875)
|...+..+...|.+.|+.++|.++++++.....-.|+..++.-++.- .+... .+..-+.. ...++.....-.
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 318 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK---YSANPVQALANYTV----QFADNRQYVVGA 318 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh---ccCchhhhccchhh----hhHHHHHHHHHH
Confidence 67777788888888888888888888876654223555555444332 22221 01111100 111111113345
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchhh
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRP-DSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 473 (875)
++..+.+.+.++.+.++.. ....+. ..-.-..+....+...++.+.++.|.+.. | +.....-+--.....|+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHH
Confidence 5788888888887776633 222233 21111112223456666666666666542 1 11111111112234445555
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
|.+++........ ....+.....-++..|.+.+......+...-...- +...-..+...+ -....+...+.....
T Consensus 395 a~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~al~ 469 (987)
T PRK09782 395 AADLLLQRYPFQG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPL-PLAEQRQWQSQL---PGIADNCPAIVRLLG 469 (987)
T ss_pred HHHHHHHhcCCCc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc-ccchhHHHHhhh---hhhhhhHHHHHHhcc
Confidence 5555555443210 00123333345555555555432222222111100 111111111100 011122222222222
Q ss_pred C-----CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 554 R-----DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 554 ~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
. +...|..+..++.. +++++|+..+.+.... .|+.. ..
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~----------------------------------~~ 512 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW----------------------------------QH 512 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH----------------------------------HH
Confidence 2 12224555555444 4555555555444432 23311 12
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcC
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAG 705 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g 705 (875)
..+...+...|++++|...|+++.. ++...+..+...+...|+.++|+..+++..+.. |+.. .+..+...+...|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 2334455678999999999987654 455567778888999999999999999999853 4443 3333344555679
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
++++|...+++..+ +.|+...|..++.++.+.|++++|+..+++.. ..|+ ...+..+..++...|+.+.|+..++
T Consensus 591 r~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999977 67887899999999999999999999999985 6664 5778888888999999999999999
Q ss_pred HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 784 RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 784 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++++++|+++..+..++++|...|++++|+..+++..+.
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988777653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-22 Score=200.16 Aligned_cols=441 Identities=13% Similarity=0.115 Sum_probs=329.5
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH-HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002834 320 WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP-ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSF 398 (875)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 398 (875)
...+..-..+.|++.+|.+.-...-+++ |+..--..++. .+.+..+.+...+--....+. .+.-..+|..+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d---~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED---PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC---CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHH
Confidence 3445555667788888877766554443 33222222222 222222222211111111111 11112244555555
Q ss_pred HhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHH
Q 002834 399 YAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVK 475 (875)
Q Consensus 399 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 475 (875)
+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|...|.+.++. .|+.
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l-------------------- 183 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDL-------------------- 183 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccch--------------------
Confidence 5555555555555555432 23345555555555555555555555554432 2222
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 476 ETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KR-NLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
....+.+-......|++.+|...+.+... .| -.+.|+.|...+..+|+...|+..|++..+
T Consensus 184 -----------------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 184 -----------------YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred -----------------hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 22233444556667899999888877665 35 567999999999999999999999999988
Q ss_pred CCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHH
Q 002834 554 RDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNG 629 (875)
Q Consensus 554 ~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 629 (875)
.++.. |..|.++|...+.+++|+..|.+.... +|+ .+.+..+...|...|.++.|...++..+...+.-+..++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 77665 999999999999999999999987753 665 456777777889999999999999999999999999999
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAG 705 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g 705 (875)
.|..++-..|++.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 999999999999999999998775 3456889999999999999999999999988 6676 456888999999999
Q ss_pred cHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
++++|+..+++..+ ++|+.. .|+.|+..|-..|+.+.|++.+.+.. ..|. ....++|..++...||+.+|+..|
T Consensus 403 nl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 99999999999977 999965 99999999999999999999999885 6775 488999999999999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+.+++++|+.|.+|-.+...+.--.+|.+
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999988888777777776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-18 Score=180.81 Aligned_cols=592 Identities=13% Similarity=0.088 Sum_probs=340.4
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHHhh--ccCCcchhhhHHHHHHHhC--CCCCcchhhHHHHHhHhcCChhHHH
Q 002834 126 DARVMNLFYNMHVRDQPKPNSVTVAIVLSACA--RLGGIFAGKSLHAYVIKFG--LERHTLVGNSLTSMYAKRGLVHDAY 201 (875)
Q Consensus 126 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 201 (875)
.+.|...|....+.. ++|. ...+.+||. ..+++..+..+|..++... ..||+.+. +-.++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 578888888887765 4444 334455554 6678999999998866554 45555433 336677889999999
Q ss_pred HHhccCCCCCeeeHHHHHHHHH------cCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHH
Q 002834 202 SVFDSIEDKDVVSWNAVISGLS------ENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCY 275 (875)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~------~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 275 (875)
..|.+..+-|+..-++++.-.. ....+..++.++...-.. .|+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~----------------------------- 268 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNE----------------------------- 268 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCC-----------------------------
Confidence 9998888766655555543211 111222233333222211 111
Q ss_pred HHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCC------ccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 002834 276 VLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRD------LVSWNAIIAGYASNDEWLKALNLFCELITKEMI 349 (875)
Q Consensus 276 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (875)
++.+.+.|.+.|.-.|++..+..+...+.... ..+|--+.++|-..|++++|...|-+..+..
T Consensus 269 ---------nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-- 337 (1018)
T KOG2002|consen 269 ---------NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-- 337 (1018)
T ss_pred ---------CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--
Confidence 66777777788888888888777777665422 2245566777777888888888877766543
Q ss_pred CCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC--C-CcchHHHH
Q 002834 350 WPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR--R-DLISWNSM 426 (875)
Q Consensus 350 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 426 (875)
||.+++ .+-.|.++|.+.|+++.+...|+.+.. | +..+...|
T Consensus 338 -~d~~~l----------------------------------~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 338 -NDNFVL----------------------------------PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred -CCCccc----------------------------------cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 555443 334566666667777777666666633 2 33444445
Q ss_pred HHHHhccC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHH----HHHhcCCCCCCchhHHHH
Q 002834 427 LDAFSESG----YNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGY----LIKTGLLLGDTEHNIGNA 498 (875)
Q Consensus 427 i~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~ 498 (875)
...|...+ ..+.|..++.+....- ..|...|..+-..+-.. ++.....++.. +...+- .+.+.+.|.
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~---~ip~E~LNN 457 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGK---QIPPEVLNN 457 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCC---CCCHHHHHh
Confidence 55555443 3344555554444332 22333444433333332 22222443333 333444 566677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC------CCcc------cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHH
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK------RNLV------TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMI 563 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~------p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~ 563 (875)
+...+...|++++|...|.....+ ++.. +--.+...+-..++++.|.+.+..+.+..+.- |.-++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 888888888888888888776553 2221 11123334445567777777777776655544 33333
Q ss_pred HHHHHcCCchHHHHHHHHHHHC-CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHh---
Q 002834 564 RVYAENDFPNQALSLFLKLQAQ-GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAK--- 637 (875)
Q Consensus 564 ~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~--- 637 (875)
-.-...+...+|...++..... ...|+..++ +-..+.....+..+..-+..+.+.-.. +....-+|.+.|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 2223345666777777765543 233433332 222344444455555544444443222 44444444444332
Q ss_pred ---------cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 002834 638 ---------CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG 705 (875)
Q Consensus 638 ---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 705 (875)
.+..++|+++|.++.. .|..+-|.+.-+++..|++.+|..+|.+..+.. .-+..+|..+.++|...|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 3446677777776654 345566667777777777777777777777753 234456666777777777
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
++-.|++.|+...+.+.-.-+.....+|+.++.+.|++.+|.+...... ..|. +....+++-. ..+..+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v---------~kkla~ 765 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV---------LKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH---------HHHHHH
Confidence 7777777777777766655566677777777777777777777665553 3332 2222122111 122333
Q ss_pred HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 784 RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 784 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.+++..+ -++-.+....+..++|.+++..|...+
T Consensus 766 s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 766 SILRLEK------RTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333 233345555677788888888887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=179.37 Aligned_cols=368 Identities=15% Similarity=0.196 Sum_probs=252.5
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPD-SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVS 397 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 397 (875)
+|+.+.+.+-..|++++|+.+|+.+.+.. |+ ...|..+-.++...|+.+.|.+.+...++.+ |+..-+.+-+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 45555555555555555555555555532 32 2344444444444455554444444444332 222213344445
Q ss_pred HHhcCCChhHHHHHHHhcCCC---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhH
Q 002834 398 FYAKCSDMEAAYRTFLMICRR---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMV 474 (875)
Q Consensus 398 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 474 (875)
.....|++.+|...+.+..+. =.+.|+.|...+-.+|+...|+..|++.+...
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld------------------------ 248 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD------------------------ 248 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC------------------------
Confidence 555567777777666655332 23567777777778888888888877776532
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcccHHHHHHHhhcCCChHHHHHHHHhhh
Q 002834 475 KETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KR-NLVTFNPVISGYANCGSADEAFMTFSRIY 552 (875)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 552 (875)
+.-...|-.|...|...+.+++|...+.+... +| ..+.+..+...|...|.++.|+..+++..
T Consensus 249 ---------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 249 ---------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred ---------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 33445567777788888888888888876655 45 55677777777866666666666666654
Q ss_pred cCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHH
Q 002834 553 ARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNG 629 (875)
Q Consensus 553 ~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 629 (875)
+.++.. |+.|.+++...|+..+|...|.+.. ...+......+
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-----------------------------------~l~p~hadam~ 358 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL-----------------------------------RLCPNHADAMN 358 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH-----------------------------------HhCCccHHHHH
Confidence 443332 5555555555555555555555544 33344555667
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ--KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITAVLSACSHAG 705 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g 705 (875)
.|...|.+.|.+++|..+|....+ |+ ....|.|...|-+.|+.++|+..|++.+. +.|+. ..|+.+...|-..|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 788889999999999999988776 33 35789999999999999999999999988 78884 56888889999999
Q ss_pred cHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRM-PVEADC-NVWGTLLGACR 770 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 770 (875)
+++.|.+.+.++.. +.|.. +..+.|..+|-.+|..++|++-++.. +++||. ..+.+++.+..
T Consensus 437 ~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 99999999999977 78884 48899999999999999999999887 488875 77888876654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-17 Score=172.76 Aligned_cols=553 Identities=11% Similarity=0.042 Sum_probs=367.4
Q ss_pred hcCChhHHHHHhhhcC--CCCccc--hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHH----HhccCCh
Q 002834 298 RFGRTEEAELLFRRMK--SRDLVS--WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPA----CAYLKNL 369 (875)
Q Consensus 298 ~~g~~~~A~~~~~~~~--~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~----~~~~~~~ 369 (875)
..|++-.|+.+|.... .|...+ .-.+-..+.+.|+.+.|+..|.+..+.+ |+...-...|.- +.....+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHH
Confidence 3456666666666532 121111 1112234456677777777777776643 432221111111 1112234
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCC------cchHHHHHHHHhccCChhHHHHHH
Q 002834 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD------LISWNSMLDAFSESGYNSQFLNLL 443 (875)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 443 (875)
..+.+++........ .++.+.+.|.+.|...|++..+..+...+...+ ..+|-.+.++|...|++++|...|
T Consensus 253 ~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445555554444432 222267788888888888888888777764432 235777888899999999999998
Q ss_pred HHHHHCCCCCChh--hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC----CHHHHHHHHH
Q 002834 444 NCMLMEGIRPDSI--TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR----NIKYAFNVFQ 517 (875)
Q Consensus 444 ~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 517 (875)
.+..+. .||.+ .+..+-..+.+.|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 777654 45543 34566777888899999999998888875 556666677777777665 5677777777
Q ss_pred hhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhh-------cC-CCccHHHHHHHHHHcCCchHHHHHHHHHHHC--
Q 002834 518 SLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIY-------AR-DLTPWNLMIRVYAENDFPNQALSLFLKLQAQ-- 585 (875)
Q Consensus 518 ~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-- 585 (875)
+.... | |...|-.+...+... ++..++..+..+. .. .+...|.+...+...|++++|...|......
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 76664 3 666776666666443 4333366555442 22 2222899999999999999999999987654
Q ss_pred -CCCCCc-----chHh-cHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CC
Q 002834 586 -GMKPDA-----VTIM-SLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KD 655 (875)
Q Consensus 586 -g~~p~~-----~~~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 655 (875)
...+|. +|.. .+-......++.+.|.+.+..+.+..+.-+..+--++.+....+...+|...+..+.+ .+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 223333 2222 2333445567899999999999999887666666666555667888999999987765 56
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhh------------cCcHHHHHHHHHHhHHHhC
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSH------------AGLVDEGLEIFRSIEKVQG 722 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~ 722 (875)
+..|+-+...+.+...+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--- 640 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--- 640 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---
Confidence 7788888888888888988888777766532 23677776667665543 3456778888877766
Q ss_pred CCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc-C-CCCccHH
Q 002834 723 IKP-TPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEME-A-DNIGNYV 797 (875)
Q Consensus 723 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p-~~~~~~~ 797 (875)
..| +...-+.++-+++..|++.+|.++|.+.. ...+..+|.++..+|...|++-.|+++|+..+... + +++....
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 334 45567778889999999999999999985 34456789999999999999999999999998764 3 4577888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCC---CCC-CChHHHHHHHHHHHHHHHhc
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD---YSH-PRRDMIYWVLSILDEQIKDQ 869 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~---~~~-~~~~~~~~~~~~l~~~~~~~ 869 (875)
.||.+|.+.|+|.+|.+....... ..|..+.+..+-....|..+. +.+ +..+++...++.|....+.+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~----~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F 792 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARH----LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLF 792 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH----hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 899999999999999996544332 234444444332222232222 222 45677777777777665544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-18 Score=189.93 Aligned_cols=417 Identities=11% Similarity=-0.001 Sum_probs=293.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC--CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR--RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 467 (875)
.+......|.+.|++++|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 556778888899999999999988633 56777888888999999999999999998875 344 3466677778888
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
.|+++.|...+..+..... ........++..+........+...++.-.. +..++..+.. |....+.+....-
T Consensus 207 lg~~~eA~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG----FRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC----CccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHH-HHHHccCCcchhh
Confidence 8888888887766554431 1111112222211111112223333322111 2333333322 2222222222222
Q ss_pred HHhhhcCCCcc---HHHHHHHH---HHcCCchHHHHHHHHHHHCC-CCCC-cchHhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 548 FSRIYARDLTP---WNLMIRVY---AENDFPNQALSLFLKLQAQG-MKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 548 ~~~~~~~~~~~---~~~l~~~~---~~~~~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
+....+.+... +..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|+.+.|...++.++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222222211 22222111 23468899999999988765 2343 34455666677788999999999999998
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVIT 695 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 695 (875)
..+.....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 8877788888999999999999999999997654 45778999999999999999999999999985 454 55566
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HH------HHHHH
Q 002834 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NV------WGTLL 766 (875)
Q Consensus 696 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~------~~~l~ 766 (875)
.+..++.+.|++++|+..|++..+ ..|+ ...|..++.++...|++++|++.+++.. ..|+. .. +....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 677789999999999999999977 3455 5688899999999999999999998863 44431 11 11222
Q ss_pred HH-HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 767 GA-CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 767 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.. +...|++++|+..++++++++|++...+..++++|.+.|++++|++.++...+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 33469999999999999999999999999999999999999999998877654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-18 Score=180.98 Aligned_cols=298 Identities=13% Similarity=0.133 Sum_probs=200.1
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 428 DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
..+...|++++|+..|+++.+.+ | .+..++..+...+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p-------------------------------------~~~~~~~~la~~~~~~g 83 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--P-------------------------------------ETVELHLALGNLFRRRG 83 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--c-------------------------------------ccHHHHHHHHHHHHHcC
Confidence 34556677777888888777653 2 22334455666666667
Q ss_pred CHHHHHHHHHhhccCCCc------ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc---cHHHHHHHHHHcCCchHHHHH
Q 002834 508 NIKYAFNVFQSLLEKRNL------VTFNPVISGYANCGSADEAFMTFSRIYARDLT---PWNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~ 578 (875)
++++|..+++.+...|+. ..+..+...|.+.|++++|..+|+++.+.++. .+..++.+|.+.|++++|++.
T Consensus 84 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 84 EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 777777776666654321 24455566665666666666666655443222 255566666777777777777
Q ss_pred HHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhh
Q 002834 579 FLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVM 658 (875)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (875)
++.+.+.+..+.... ....
T Consensus 164 ~~~~~~~~~~~~~~~-------------------------------------------------------------~~~~ 182 (389)
T PRK11788 164 AERLEKLGGDSLRVE-------------------------------------------------------------IAHF 182 (389)
T ss_pred HHHHHHhcCCcchHH-------------------------------------------------------------HHHH
Confidence 777765432211000 0112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDL 736 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 736 (875)
|..++..+...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+ ..|+ ...+..++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHH
Confidence 4456666777888888888888887742 22344566666788888888888888888866 2343 3467778888
Q ss_pred hhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh--cCCchhHH
Q 002834 737 LARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA--DARWDGVV 813 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~ 813 (875)
|.+.|++++|.+.++++. ..|+...+..+...+...|+++.|...++++++..|+++.....+...+.. .|+.++++
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 888888888888888874 567776667788888889999999999999999999887544334333322 56999999
Q ss_pred HHHHHHHhCCCcCCCc
Q 002834 814 EIRKLMKTRDLKKPAA 829 (875)
Q Consensus 814 ~~~~~~~~~~~~~~~~ 829 (875)
.+++.|..++++++|+
T Consensus 339 ~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999998888888887
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-17 Score=184.23 Aligned_cols=391 Identities=8% Similarity=-0.042 Sum_probs=232.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCC-C--CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhc
Q 002834 392 GNALVSFYAKCSDMEAAYRTFLMICR-R--DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS-ITILTIIHFCTT 467 (875)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~ 467 (875)
..-.+......|+.++|++++.+... . +...+..+...+...|++++|..+|++.++. .|+. ..+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34445555566666666666666543 2 2233666666666677777777777666553 2221 222222233333
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAF 545 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~ 545 (875)
.++.+.|...++.+.+.. +.+.. +..+..++...|+.++|+..++++... | +...+..+...+...+..++|+
T Consensus 96 ~g~~~eA~~~l~~~l~~~----P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA----PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 333334433333333332 22333 444455555555555555555554442 3 2233333444444444444444
Q ss_pred HHHHhhhcCCCc--------cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch---HHHHHHH
Q 002834 546 MTFSRIYARDLT--------PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV---HLLRQCH 614 (875)
Q Consensus 546 ~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~---~~a~~~~ 614 (875)
..++++.. .+. +...++..+.. ......+++ +.|.+.+
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHHH
Confidence 44443332 110 00111111100 000111122 4455555
Q ss_pred HHHHHhc---CC-CchHHHH---HHHHhHhcCCHHHHHHHhccCCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 615 GYVIRAC---FD-GVRLNGA---LLHLYAKCGSIFSASKIFQCHPQKD---VV-MLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 615 ~~~~~~~---~~-~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
+.+.+.. ++ .+..... .+..+...|++++|+..|+++.+.+ +. .-..+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 5555431 11 1111111 1223456789999999999887632 11 12225678899999999999999987
Q ss_pred HCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhC----------CCCC---hhHHHHHHHHhhcCCChHH
Q 002834 684 ELGVNPD-----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQG----------IKPT---PEQYASLVDLLARGGQISD 745 (875)
Q Consensus 684 ~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 745 (875)
+. .|. ......+..++...|++++|.++++++.+... -.|+ ...+..++..+...|++++
T Consensus 300 ~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 64 332 23455566678899999999999999876311 1122 1245667888999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
|++.++++. ..| +...+..+...+...|+.+.|++.++++++++|+++..+..++..+...|+|++|+.+++.+.+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999974 444 56888889999999999999999999999999999999999999999999999999998887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-16 Score=161.80 Aligned_cols=718 Identities=11% Similarity=0.014 Sum_probs=396.2
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCC
Q 002834 26 LSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVD 105 (875)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (875)
..++-.+...+ ..|++.||..+|..|+..|+.+.|- ++..|.-..++.+..+++.++....+.++.+.+.
T Consensus 10 tnfla~~e~~g--i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISG--ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhc--CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 35666666765 8999999999999999999998888 9999998888889999999999999998877766
Q ss_pred CCCchhHHHHHHHHhcCCCChhH---HHHHHHHhHh----cCCCCCCcchHHHHHHHhhccCCcchh--------hhHHH
Q 002834 106 NTDPVTWNILLSGFACSHVDDAR---VMNLFYNMHV----RDQPKPNSVTVAIVLSACARLGGIFAG--------KSLHA 170 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~---a~~~~~~m~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a--------~~~~~ 170 (875)
+|.+.+|+.|+.+|.+.| +... ..+.+..+.. .| +..-..-|-..+ .|+..-..+.. +.+++
T Consensus 80 ep~aDtyt~Ll~ayr~hG-Dli~fe~veqdLe~i~~sfs~~G-vgs~e~~fl~k~-~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHG-DLILFEVVEQDLESINQSFSDHG-VGSPERWFLMKI-HCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhcc-chHHHHHHHHHHHHHHhhhhhhc-cCcHHHHHHhhc-ccCcccchhHHHHHHHHHHHHHHH
Confidence 788899999999999998 7654 2221222222 22 111111222222 22221111111 23344
Q ss_pred HHHHhCC--CCCcchhhHHHHHhHhcC-----ChhHHHHHhccCCC-CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCC
Q 002834 171 YVIKFGL--ERHTLVGNSLTSMYAKRG-----LVHDAYSVFDSIED-KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEP 242 (875)
Q Consensus 171 ~~~~~g~--~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 242 (875)
..++.+. +.......... +.+.. .+++-........+ ++..+|.+++.+-.-+|+.+.|..++.+|++.|
T Consensus 157 qllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4444441 11111111111 12221 22333333333333 899999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHH
Q 002834 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNA 322 (875)
Q Consensus 243 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (875)
...+..-|..+|.+ .+ +......+..-+...|..+ +..|+..-+-....+|....+.+. .+....+++
T Consensus 235 fpir~HyFwpLl~g---~~---~~q~~e~vlrgmqe~gv~p-~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---IN---AAQVFEFVLRGMQEKGVQP-GSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---Cc---cchHHHHHHHHHHHhcCCC-CcchhHHHHHhhhcchhhhhcccc-----cchhhhhhH
Confidence 99999888888876 22 3444445555555555555 888888777777665553322221 122222222
Q ss_pred HHHHHHcCC-----CHH-----HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCC--Cchhh
Q 002834 323 IIAGYASND-----EWL-----KALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYL--EEDAA 390 (875)
Q Consensus 323 li~~~~~~g-----~~~-----~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 390 (875)
-...-+-.| +.+ -.+..+.+..-.| +......|....+ ....|.-+...++-+.+..--.. +++..
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg-~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLG-TDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhc-cccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 222222222 111 1112222222222 2222222222221 12244444555544444322111 11111
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-hHH--HHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLI-SWN--SMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
.+. ..+.+.|.++..+... .++ ..++-........+..++.... .|++.--. +..-.
T Consensus 381 a~~------------~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~-lv~Ls-- 440 (1088)
T KOG4318|consen 381 AFG------------ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQ-LVGLS-- 440 (1088)
T ss_pred HHH------------HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHH-Hhhhh--
Confidence 111 2234455555444222 222 1111111112222222222222 23322100 00000
Q ss_pred cCchhhHHHHHHHHHHhcCC---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH
Q 002834 468 VLREGMVKETHGYLIKTGLL---LGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA 544 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 544 (875)
-.+..+.... ...+-..+.+.++..+++.-+..+++..-+.....--...|..||+-++.+.+.+.|
T Consensus 441 ----------s~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 441 ----------STELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred ----------HHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH
Confidence 0000110000 001222334556666666666666665444443321235788999999999999999
Q ss_pred HHHHHhhhcCCCcc------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC--cchHhcHHHHhhcccchHHHHHHHHH
Q 002834 545 FMTFSRIYARDLTP------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD--AVTIMSLLPVCSQMASVHLLRQCHGY 616 (875)
Q Consensus 545 ~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~ 616 (875)
..+.++...++... +..+.+.+.+.+...++..++.++.+.-..-+ ..++-.++......|..+..++.++.
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 99999987776554 88899999999999999999999887432222 34556677777788899999999999
Q ss_pred HHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 617 VIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---K---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 617 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
+...|+. + .-++....+.++...|.+.++...+ + +...|..++.-- ...+++.+..+-....
T Consensus 591 lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~mDls~~iq------ 659 (1088)
T KOG4318|consen 591 LVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTDSPQKTMDLSIPIQ------ 659 (1088)
T ss_pred HHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccccHHHHHhhcchhH------
Confidence 8888877 3 3444556677888888877765432 2 222222222100 0112222221111100
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHh----------HHHh-CCCC---------ChhHHHHHHHHhhcCCChHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSI----------EKVQ-GIKP---------TPEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~----------~~~~-~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
-|.+.|++.+|.++.+.= ..+. .+.| +......|+..|.+.|+++.|..+
T Consensus 660 ----------~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~gl 729 (1088)
T KOG4318|consen 660 ----------KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGL 729 (1088)
T ss_pred ----------HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhH
Confidence 123333333332222100 0000 0000 112333477889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 750 VNRMPVEADCNVWGTLLGACRIHH---EVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 750 ~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
+.+++..|+......|+..+.++. |+.++....+++-++.|.++.+ |.-.+-+..+-.+.+-|.+++.+..++.
T Consensus 730 wnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 730 WNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 999998888888888888877654 6778888888888888776653 3333333333334446666888887763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-16 Score=174.59 Aligned_cols=269 Identities=11% Similarity=0.033 Sum_probs=185.8
Q ss_pred CChHHHHHHHHhhhcCC---C---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHH
Q 002834 539 GSADEAFMTFSRIYARD---L---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLR 611 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~ 611 (875)
+++++|.+.|++....+ + ..|..+..++...|++++|+..|++..+. .|+ ...|..+...+...|+++.+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555554332 1 11555555566666666666666666543 343 234455555566666667777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 002834 612 QCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN 688 (875)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 688 (875)
..++.+.+..+.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 666666666655677778888888999999999999987765 35567888888999999999999999998874 23
Q ss_pred CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh--------HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH
Q 002834 689 PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE--------QYASLVDLLARGGQISDAYSLVNRM-PVEADC 759 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 759 (875)
-+...+..+..++...|++++|.+.|++..+ +.|+.. .+......+...|++++|.+++++. ...|+.
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3456777788899999999999999999876 444321 1122222334469999999999886 356654
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 760 -NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 760 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..+...+...|+++.|+..+++++++.+.....+ ....|.+|.++....++
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 6688888999999999999999999999987644322 22345566666554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-13 Score=140.22 Aligned_cols=366 Identities=11% Similarity=0.041 Sum_probs=284.9
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
-..|.+.+..+-+..++...++.- +....++...+..--..|..++...+|++.... | ....|-.....+...|
T Consensus 523 a~~~~k~~~~~carAVya~alqvf----p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVF----PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 333444444444444444433332 334444444555555567777777777766654 3 4456666666777778
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGY 616 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 616 (875)
+...|..++..+.+.++.+ |..-++.-..+..++.|..+|.+... ..|+...|.--+..---++..++|.++++.
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 8888888888887766666 77777777888999999999988775 567777777666666777889999999998
Q ss_pred HHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 002834 617 VIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV 693 (875)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 693 (875)
..+.-+.-..+|..+...+...++++.|...|....+ |+ +..|-.|...--+.|+.-+|..++++..-.+ +-|...
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~l 755 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALL 755 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchh
Confidence 8888888888999999999999999999999998876 44 4578888888888999999999999998864 556788
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHH 773 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 773 (875)
|...++.-.+.|..+.|..++.++.+. .+-+...|..-+....+.++-..+.+.+++. +.|+.+..+....++...
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 999999999999999999999988773 4445568888888889999988888888876 456666777778888889
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEe
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNN 840 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 840 (875)
.+++|.+-+++++..+|++..+|..+-..+...|.-++-.+++++.... .+..|..|..+...+.
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 9999999999999999999999999888999999999999999988764 4567888988776553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-16 Score=175.78 Aligned_cols=325 Identities=10% Similarity=0.010 Sum_probs=194.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 002834 423 WNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDA 502 (875)
Q Consensus 423 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 502 (875)
...++..+.+.|+.++|+.+++..+.....+....+ .+..++...|+.+.|...++.+.+.. +.+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~----P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVN----VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHH
Confidence 344566677778888888887777765432222222 22233334555555555555555443 3344445555555
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHH
Q 002834 503 YAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 503 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 577 (875)
+...|++++|...+++.... | +...+..+...+...|++++|...++.+...++.+ +..+ ..+...|++++|..
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 55666666666666555442 3 33445555555555555555555554443222221 2111 12444455555555
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--- 653 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 653 (875)
.++.+. +..+. .......+...+.+.|++++|...|++...
T Consensus 199 ~~~~~l-----------------------------------~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 199 LARALL-----------------------------------PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHH-----------------------------------hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 555444 33222 222223344556667777777777776543
Q ss_pred CChhhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-
Q 002834 654 KDVVMLTAMIGGYAMHGMGKA----ALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP- 727 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 727 (875)
.+...+..+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++++.+ ..|+.
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 345567777777777887774 78888888774 444 45666677788888888888888888766 45553
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWG-TLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
..+..++.+|.+.|++++|.+.++++. ..|+...+. .+..++...|+.+.|+..++++++.+|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 366677888888888888888888775 556553433 345566778888888888888888888764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-16 Score=176.93 Aligned_cols=317 Identities=9% Similarity=-0.024 Sum_probs=226.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCch
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPN 573 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 573 (875)
++..+.+.|++++|..+++..... | +...+..++.+....|++++|...++++...++.. +..+...+.+.|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 344445556666666665555442 2 33344444455555666666666666654443332 555566666666666
Q ss_pred HHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCC
Q 002834 574 QALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
+|+..++++.+. .|+ ...+..+...+...|+.+.|...+..+....+.+...+..+. .+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 666666666553 333 234445555666666666666666666555555444443333 4778899999999998865
Q ss_pred CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH----HHHHHHHhHHHhCCC
Q 002834 653 QK----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE----GLEIFRSIEKVQGIK 724 (875)
Q Consensus 653 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~ 724 (875)
+. +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++.+ +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 52 23344556778889999999999999999853 3345566777789999999986 8999999977 56
Q ss_pred CC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 725 PT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 725 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
|+ ...+..++..+.+.|++++|...+++.. ..|+ ...+..+..++...|+++.|+..++++++.+|+++..+..++.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66 4588999999999999999999999885 5564 5678888888999999999999999999999999877777899
Q ss_pred HHHhcCCchhHHHHHHHHHhC
Q 002834 802 LYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 802 ~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+|...|++++|++.++...+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-15 Score=164.20 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=116.9
Q ss_pred HhHhcCCHHHHHHHhccCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhhc
Q 002834 634 LYAKCGSIFSASKIFQCHPQKD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-----NPDHVVITAVLSACSHA 704 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~a~~~~ 704 (875)
++.+.|++.++++.|+.+..+. ..+--.+..+|...+++++|+.+|+++..... .++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 4455677777777777666421 12444566777777777777777777655321 11222235566677777
Q ss_pred CcHHHHHHHHHHhHHHhC----------CCCC---hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQG----------IKPT---PEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGAC 769 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~ 769 (875)
+++++|..+++++.+... -.|+ ...+..++..+.-.|++.+|++.++++. . +.|...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777765211 0122 1234445666667777777777777763 3 33556667777777
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|+...|++.++.+..++|++......++..+...|+|.+|..+.+.+.+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777666555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-15 Score=172.59 Aligned_cols=362 Identities=11% Similarity=0.024 Sum_probs=233.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhc---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMI---CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
.+..+...+.+.|++++|..+|++. ...+...+..++..+...|+.++|+..+++.++. .|+...+..+-.++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4555555566666666666666553 2223444555666666666666666666666654 2332225555555666
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc------cHHHHHHHhh-----
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLV------TFNPVISGYA----- 536 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------~~~~l~~~~~----- 536 (875)
.|+.+.|...++.+.+.. +.+......+..++...|..++|++.++.....|+.. ....++....
T Consensus 129 ~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA----PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 666666666666666654 4556666778888889999999999999888765420 1111222211
Q ss_pred cCCCh---HHHHHHHHhhhc---CCCcc---HH----HHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhh
Q 002834 537 NCGSA---DEAFMTFSRIYA---RDLTP---WN----LMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCS 602 (875)
Q Consensus 537 ~~~~~---~~A~~~~~~~~~---~~~~~---~~----~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~ 602 (875)
..+++ ++|+..++.+.. .++.. +. ..+..+...|++++|+..|+++.+.+.. |+
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~------------ 272 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP------------ 272 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH------------
Confidence 11223 555666655542 22222 10 1122334556666666666666654321 21
Q ss_pred cccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHHHcCChHHH
Q 002834 603 QMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD-------VVMLTAMIGGYAMHGMGKAA 675 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A 675 (875)
.....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++|
T Consensus 273 -----------------------~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 273 -----------------------WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred -----------------------HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 111223556777788888888777654411 23455566678888999999
Q ss_pred HHHHHHHHHCCC-----------CCCh---hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC
Q 002834 676 LKVFSDMLELGV-----------NPDH---VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG 740 (875)
Q Consensus 676 ~~~~~~m~~~g~-----------~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 740 (875)
+++++++.+... .|+. ..+..+...+...|+.++|++.++++.. ..|+ ...+..++.++...
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 999998887421 1232 2344556688899999999999999977 3454 55888999999999
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 741 GQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
|++++|++.+++.. ..|+ ...+..+...+...|+++.|+..++++++..|+++.+.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999985 6676 46666777778889999999999999999999998653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=171.73 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=158.7
Q ss_pred HHHhcCCChhHHHHHHHhcCCC---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhh
Q 002834 397 SFYAKCSDMEAAYRTFLMICRR---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 473 (875)
..+...|++++|...|+++... +..++..+...+...|++++|..+++.+...+..++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 3455677888888888877442 44567778888888888888888888887643221110
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhh
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRI 551 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 551 (875)
....+..+...|.+.|++++|..+|+++... | +..++..++..+.+.|++++|.+.++++
T Consensus 106 ------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 106 ------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0112234445555555555555555555442 1 3445555555555555555555555555
Q ss_pred hcCCCcc--------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcC
Q 002834 552 YARDLTP--------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACF 622 (875)
Q Consensus 552 ~~~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 622 (875)
...++.+ +..++..+.+.|++++|...|+++.+. .|+ ...+..+...+...|+.+.|.+++..+...++
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 4332221 334455556666666666666666543 222 22333333344444444444444444443333
Q ss_pred C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 623 D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 623 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
. ....+..++..|.+.|++++|...++++.+ |+...+..++..+.+.|++++|+.+++++.+. .|+..++..++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 3 233344555556666666666666655443 44444555666666666666666666666553 466666665555
Q ss_pred HHhh---cCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 700 ACSH---AGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 700 a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
.+.. .|+.+++..++++|.+ .+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH-HHHhCCCC
Confidence 4442 3456666666666655 34455444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-14 Score=137.09 Aligned_cols=448 Identities=14% Similarity=0.090 Sum_probs=262.4
Q ss_pred chhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccC--Ccch-hhhHHHHHHHhCCCCCcchhh
Q 002834 109 PVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLG--GIFA-GKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~--~~~~-a~~~~~~~~~~g~~~~~~~~~ 185 (875)
+.+=|.|+... .++ ...++.-+|+.|+..| ++.++..-..|++..+-.+ ++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~-EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSR-EVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hcchhHHHHHH-hhc-ccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 34567777765 566 8999999999999999 8888877777766544322 2222 233444555555 3334444
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
+.|++.+ ++-+...+...+|..||.++|+--..+.|.++|++......+.+..+|+.+|.+.+...
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~---- 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV---- 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence 4455544 44444445667899999999999999999999999999888999999999998775443
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
++.+...|+.....+ |..++|+++.+..+.|+++.|++- |++++.+|++
T Consensus 257 ---~K~Lv~EMisqkm~P-nl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKe 305 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTP-NLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKE 305 (625)
T ss_pred ---cHHHHHHHHHhhcCC-chHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHH
Confidence 466667776666665 777777777777777776665433 3344444444
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhh-HHHHHHHHHhc-------CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKV-GKEIHGYFLRH-------PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR 417 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 417 (875)
-| +.|...+|..+|.-+++.++..+ +..++..+... ...++....+...+..+.+..+.+.|.++-.-...
T Consensus 306 iG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 306 IG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred hC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 44 55555555555544444444322 11111111110 01122222444444444455555545444333211
Q ss_pred --------C---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 418 --------R---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 418 --------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
+ ...-|..+....|+....+.-+..|+.|+-+-+-|+..+...++++..-.+.++...++|..++..|.
T Consensus 385 g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 385 GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 1 12346667778888888999999999999888889999999999999999999999999999998886
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcC-CC-hHHHHHHHHhhhcCCCcc--HHHH
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANC-GS-ADEAFMTFSRIYARDLTP--WNLM 562 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~-~~~A~~~~~~~~~~~~~~--~~~l 562 (875)
.......-.+.. ++..-.-.|+...-..+-.+..+. -+ .+..+..-.++...+..+ .+..
T Consensus 465 ---t~r~~l~eeil~-------------~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~i 528 (625)
T KOG4422|consen 465 ---TFRSDLREEILM-------------LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCI 528 (625)
T ss_pred ---hhhHHHHHHHHH-------------HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHH
Confidence 322222222222 222222123222111221111111 01 111122223333333333 5666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCC-C---CcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMK-P---DAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD 623 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~-p---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 623 (875)
+-.+.+.|+.++|.++|..+.+.+-+ | ....+..++.+.....+...|...++.+...+.+
T Consensus 529 a~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 529 AILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 66667788888888877777554422 2 2222233444444444555555555555444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-14 Score=150.08 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcC--C-CchHHHHHHHHhH
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACF--D-GVRLNGALLHLYA 636 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~l~~~~~ 636 (875)
+.++..+++.-+..+++..-+.....-+ | ..|..+++-|.....++.|..+.+.+..... . +...+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 4455555665555555544333332211 1 5677888888888888888888777665533 3 6777788888888
Q ss_pred hcCCHHHHHHHhccCCC-----CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHH
Q 002834 637 KCGSIFSASKIFQCHPQ-----KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEG 710 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 710 (875)
+.+...++..++.++.+ ++ ..+.--+....+..|+.+...++++-+...|+..+ .-+.....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 88889999888888775 21 12334456666778888888888888877776552 2234455677888888
Q ss_pred HHHHHHhHHHhCCCCC
Q 002834 711 LEIFRSIEKVQGIKPT 726 (875)
Q Consensus 711 ~~~~~~~~~~~~~~p~ 726 (875)
.+.++...+.+.+.|.
T Consensus 616 ~ea~e~~~qkyk~~P~ 631 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPK 631 (1088)
T ss_pred hhcchHHHHHhcCChH
Confidence 8888887776555553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-14 Score=136.57 Aligned_cols=327 Identities=16% Similarity=0.161 Sum_probs=210.3
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHH---hcccCchHHHHHHHHHHHHhcCCCCchhhhHH
Q 002834 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKS---CTSLADILLGKALHGYVTKLGHISCQAVSKAL 84 (875)
Q Consensus 8 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (875)
+=|.|+. +..+|..++++-+|++|...+ +..+...=..|++. +-.+.-.-.-.+.|-.|.+.|- .+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~--~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSEN--VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcC--CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 3344443 456778888889999998876 44444444444433 2222222111222333333331 111122
Q ss_pred HHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcch
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFA 164 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (875)
|.|.+.+ -+|+.. .....+|.+||.+.|+-. ..+.|.++|++-.... .+.+..+||.+|.+-. +..
T Consensus 191 -----K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~ 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFS-SLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSV 256 (625)
T ss_pred -----ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhc
Confidence 3344333 344444 356678999999999988 9999999999998887 7899999999998765 333
Q ss_pred hhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHH----HhccCC----CCCeeeHHHHHHHHHcCCCcch-HHHHH
Q 002834 165 GKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYS----VFDSIE----DKDVVSWNAVISGLSENKVLGD-AFRLF 235 (875)
Q Consensus 165 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~l~ 235 (875)
.+.++.+|....+.||..++|+++.+.++.|+++.|.+ ++.+|+ +|...+|..+|..+++.++..+ |..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 48899999999999999999999999999999877654 444454 3777888888888888777643 44444
Q ss_pred HHHHh----CCCC---C-ChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHH
Q 002834 236 SWMLT----EPIK---P-NYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAEL 307 (875)
Q Consensus 236 ~~m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (875)
.+... ...+ | +..-|.+.+..|.++. +...+.+++..........
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~---d~~LA~~v~~ll~tg~N~~------------------------ 389 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR---DLELAYQVHGLLKTGDNWK------------------------ 389 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh---hHHHHHHHHHHHHcCCchh------------------------
Confidence 44432 2222 2 2334455555555555 4444444433322111100
Q ss_pred HhhhcCC--CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCC
Q 002834 308 LFRRMKS--RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYL 385 (875)
Q Consensus 308 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (875)
.|.. ....-|..+....|+....+..+..|+.|.-.- +-|+..+-..++++....+.++...++|..++..|..
T Consensus 390 ---~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 390 ---FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0000 112335566677778888888888888888877 7788888888888888888888888888888777743
Q ss_pred C
Q 002834 386 E 386 (875)
Q Consensus 386 ~ 386 (875)
.
T Consensus 466 ~ 466 (625)
T KOG4422|consen 466 F 466 (625)
T ss_pred h
Confidence 3
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-12 Score=128.60 Aligned_cols=614 Identities=13% Similarity=0.048 Sum_probs=363.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCC---CCCchhHHHHHHHHhcCCCChhHHHHHH
Q 002834 57 ADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVD---NTDPVTWNILLSGFACSHVDDARVMNLF 133 (875)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~a~~~~ 133 (875)
+|+..|+.+++-+.+.. +.++..+-+-...=-..|++..|+.+...=. ..+...|--.|+ .. .++.|-.+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lh-p~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LH-PPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cC-ChHHHHHHH
Confidence 36677777777777664 2223333222222234566667776664332 223333433322 22 455555555
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCee
Q 002834 134 YNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVV 213 (875)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 213 (875)
....+.- |+ +-...+.+.--..+...-.+++...++. ++.++..|-..+ ...+.++|..++.+..+--.
T Consensus 339 A~Avr~~---P~--Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp- 407 (913)
T KOG0495|consen 339 ANAVRFL---PT--SVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCP- 407 (913)
T ss_pred HHHHHhC---CC--ChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhcc-
Confidence 5544321 22 2222233332222333333444444443 233444443333 33445556666655443100
Q ss_pred eHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHH
Q 002834 214 SWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALV 293 (875)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 293 (875)
+-.-|..++++..-++.|..+++..++. .|+ +..+|.+-.
T Consensus 408 ~s~dLwlAlarLetYenAkkvLNkaRe~--ipt--------------------------------------d~~IWitaa 447 (913)
T KOG0495|consen 408 QSMDLWLALARLETYENAKKVLNKAREI--IPT--------------------------------------DREIWITAA 447 (913)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh--CCC--------------------------------------ChhHHHHHH
Confidence 1112233455555666666666666553 332 444444333
Q ss_pred HHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHH
Q 002834 294 SFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGK 373 (875)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 373 (875)
..--..|+.+...++.++- +..+...| +..+...|..=..+|-+.|.+-...
T Consensus 448 ~LEE~ngn~~mv~kii~rg---------------------------l~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRG---------------------------LSELQANG-VEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHhcCCHHHHHHHHHHH---------------------------HHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHH
Confidence 3333444444443333221 11223344 5555555555555566666666666
Q ss_pred HHHHHHHhcCCCCc-hhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHC
Q 002834 374 EIHGYFLRHPYLEE-DAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLME 449 (875)
Q Consensus 374 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 449 (875)
.+...++..|+... ...++..-.+.+.+.+.++-|..+|....+ .+...|...+..--..|..++...+|++.+..
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666665432 223566666777777777777777766533 35566777777777778888888888888775
Q ss_pred CCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccH
Q 002834 450 GIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTF 528 (875)
Q Consensus 450 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~ 528 (875)
- +-....|....+..-..|++..+..++..+.+.. +.+..++-+-+........+++|..+|.+.... |+...|
T Consensus 580 ~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~ 654 (913)
T KOG0495|consen 580 C-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW 654 (913)
T ss_pred C-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh
Confidence 2 2223334444444555677777777777766665 445666666777777777777777777776664 566666
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHHHhhcccch
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLPVCSQMASV 607 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~ 607 (875)
..-+..-.-.++.++ |++++++..+. -|+-. .|..+-+.+.+.+++
T Consensus 655 mKs~~~er~ld~~ee-------------------------------A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 655 MKSANLERYLDNVEE-------------------------------ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhHHHHHhhhHHH-------------------------------HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 555555544444444 44444444432 23322 233333444445555
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+.+...+..-.+..+..+.+|-.|...-.+.|++-.|..+|++..- .|...|-..|..-.+.|+.+.|..+..+.++
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555677777888888888888999999987654 4667888999999999999999999888887
Q ss_pred CCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHH
Q 002834 685 LGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVW 762 (875)
Q Consensus 685 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~ 762 (875)
. ++-+...|.--|...-+.++-......+++. .-|+.....+...+....+++.|.++|.+.. ..||. ++|
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 5 5556667777777666666666665555444 3355566677788888899999999998874 66765 889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
..+...+..||.-+.-++++.+...-+|.....|...+
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 99999999999999999999999999998877665544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-13 Score=150.51 Aligned_cols=438 Identities=10% Similarity=0.006 Sum_probs=256.7
Q ss_pred HHHHhHhcCChhHHHHHhhhcCCCCcc---chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHH---HHHHHHhc
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKSRDLV---SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLV---SLLPACAY 365 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~---~ll~~~~~ 365 (875)
-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+...+..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHH
Confidence 333456677777777777766642222 12266666666677777777777665 13222222 22334455
Q ss_pred cCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhc--cCChhHHHHHH
Q 002834 366 LKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSE--SGYNSQFLNLL 443 (875)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~ 443 (875)
.|+++.|.++++.+++..... ..++..++..|...++.++|++.++++...+......+..++.. .++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 566666666666666554332 22444555556666666666666666544333222222222222 33443466666
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 444 NCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 444 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
+++.+.. +.+...+..++..+.+.|-...|.++..+-+.
T Consensus 193 ekll~~~---------------------------------------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~-- 231 (822)
T PRK14574 193 SEAVRLA---------------------------------------PTSEEVLKNHLEILQRNRIVEPALRLAKENPN-- 231 (822)
T ss_pred HHHHHhC---------------------------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--
Confidence 6655542 34445555666666666666666666555332
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCC---chHHHHHHHHHHHC-CCCCCcc-----hH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDF---PNQALSLFLKLQAQ-GMKPDAV-----TI 594 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~~-----~~ 594 (875)
..+-...... +.+.|.+..+-...+.. ....+ .+.|+.-++.+... +-.|... ..
T Consensus 232 -~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~ 295 (822)
T PRK14574 232 -LVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR 295 (822)
T ss_pred -ccCHHHHHHH-----HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH
Confidence 1111110000 00001111100000000 00011 12233333333321 1112211 11
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCC---------ChhhHHHHHH
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQK---------DVVMLTAMIG 664 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~ 664 (875)
..-+.+....++...+...++.+...+.+ ...+..++.++|...+++++|..+|.++... +......|..
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 23344555555666666666666665555 5667778889999999999999999876431 2333567889
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-------------CCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHH
Q 002834 665 GYAMHGMGKAALKVFSDMLELGV-------------NPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQY 730 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 730 (875)
+|...+++++|..+++++.+... .||-.. +..+...+...|+..+|.+.++++.. .-+-|....
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~ 453 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLR 453 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 99999999999999999987311 122223 33345578899999999999999976 233456688
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
..+.+++...|+..+|++.++... ..|+. .+......+....+++..|+...+++++..|+++..
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999998775 66754 666677778888999999999999999999999854
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-13 Score=140.45 Aligned_cols=536 Identities=12% Similarity=0.070 Sum_probs=363.1
Q ss_pred CCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhH
Q 002834 225 NKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEE 304 (875)
Q Consensus 225 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 304 (875)
.|+.++|.+++.+..+. .|. +...|..|...|-..|+.++
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~--------------------------------------~~~ay~tL~~IyEqrGd~eK 191 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPR--------------------------------------NPIAYYTLGEIYEQRGDIEK 191 (895)
T ss_pred hCCHHHHHHHHHHHHHh--Ccc--------------------------------------chhhHHHHHHHHHHcccHHH
Confidence 49999999999999876 343 67778888888888898888
Q ss_pred HHHHhhhc---CCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHh
Q 002834 305 AELLFRRM---KSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLR 381 (875)
Q Consensus 305 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (875)
+...+-.. ...|..-|-.+-.-..+.|++++|.-+|.+..+.. +++...+---...|.+.|+...|..-+.++..
T Consensus 192 ~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 192 ALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 88776433 34566778888888888889999999998888864 34444444555667788888888888888887
Q ss_pred cCCCCchhh---HHHHHHHHHhcCCChhHHHHHHHhcCC--C---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCC
Q 002834 382 HPYLEEDAA---VGNALVSFYAKCSDMEAAYRTFLMICR--R---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRP 453 (875)
Q Consensus 382 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 453 (875)
...+.+... ..-..++.+...++-+.|.+.++.... . +...++.++..+.+...++.+......+......+
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 765333221 122345667777777888888877644 2 44578899999999999999999998887733222
Q ss_pred ChhhH--------------------------HHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 454 DSITI--------------------------LTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 454 ~~~t~--------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
|...+ .-+.-++.+....+....+.....+..++ ..-+...|..+.++|...|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW-VSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC-hhhhHHHHHHHHHHHHhcc
Confidence 22221 12233445666677777777777777652 2556678899999999999
Q ss_pred CHHHHHHHHHhhccCC---CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHH
Q 002834 508 NIKYAFNVFQSLLEKR---NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLK 581 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~ 581 (875)
++.+|+.+|..+...| +...|-.+..+|...|..+.|.+.++++....+.. -..|...|.+.|++++|++.+..
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999874 67789999999999999999999999998777766 56677889999999999999998
Q ss_pred HH--------HCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc----------------------CC-CchHHHH
Q 002834 582 LQ--------AQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC----------------------FD-GVRLNGA 630 (875)
Q Consensus 582 m~--------~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~----------------------~~-~~~~~~~ 630 (875)
|. ..+..|+..........+...|+.+.-..+...++... .. .......
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 64 22233444444444455566676666544433333211 11 2333334
Q ss_pred HHHHhHhcCCHHHHHHHhccCC--------CCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCChh--h-
Q 002834 631 LLHLYAKCGSIFSASKIFQCHP--------QKDVV----MLTAMIGGYAMHGMGKAALKVFSDMLELGV--NPDHV--V- 693 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~--------~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--~- 693 (875)
++.+-.+.++.....+-...-. .-... .+.-++.++++.++.++|+.+...+..... .++.. .
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 4444444444333322222111 11222 234577889999999999999998887542 22221 2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHH-HHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWG-TLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~-~l~~ 767 (875)
-...+.++...+++..|..+++.|...++...+ ...|++..+.+.+.|+---=..++.... ..|+. .... ....
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh 748 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGH 748 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeech
Confidence 234555788899999999999999875444333 2356656666666665444344444432 23322 1111 1122
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.....+.+.-|...+-+++...|++|-....+|-.+
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred hHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 234567788899999999999999998777666543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-12 Score=136.15 Aligned_cols=347 Identities=13% Similarity=0.054 Sum_probs=227.3
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhcc---CCCCCchhHHHHHHHHhcCCCChhHH
Q 002834 53 CTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQ---VDNTDPVTWNILLSGFACSHVDDARV 129 (875)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~~a 129 (875)
+...|++..|..++.++++.. +.+...|.+|...|-..|+.+.+...+=- +...|..-|-.+-.-..+.| .+.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~-~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG-NINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-cHHHH
Confidence 344599999999999999975 56778899999999999999999886633 34456677888888788888 99999
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhH----HHHHhHhcCChhHHHHHhc
Q 002834 130 MNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS----LTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 130 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 205 (875)
.-.|.+..+.. +++...+--=...|-+.|+...|...+.++.....+.|..-.-. .++.|...++.+.|.+.++
T Consensus 227 ~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999998876 66666666667778889999999999999988764333333333 3556677788889998888
Q ss_pred cCCC-----CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHh-
Q 002834 206 SIED-----KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRR- 279 (875)
Q Consensus 206 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (875)
.... -+...++.++..+.+...++.|......+......+|..-+.+= ...+.-.......
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-------------~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-------------ERRREEPNALCEVG 371 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-------------hhccccccccccCC
Confidence 7664 34557888999999999999999999998874444442222000 0000000000000
Q ss_pred cccCCchhH-hhhHHHHhHhcCChhHHHHHhhhcCC----CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChh
Q 002834 280 AELIADVSV-CNALVSFYLRFGRTEEAELLFRRMKS----RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSV 354 (875)
Q Consensus 280 ~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~ 354 (875)
....++..+ ...+.-...+.+...+++.-|-.... -+...|.-+..+|...|++.+|+.+|..+.... ..-+..
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAF 450 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchh
Confidence 011114444 22222223334444444433322221 234456666777777777777777777776654 333445
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCC
Q 002834 355 TLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD 419 (875)
Q Consensus 355 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 419 (875)
.|..+-..+...+..+.|.+.+..++... |+...+..+|...|.+.|+.++|.+.++.+..||
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 56566666666666666666666666553 2222255677777778888888888887776555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-14 Score=136.75 Aligned_cols=475 Identities=10% Similarity=0.066 Sum_probs=284.7
Q ss_pred HHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhc
Q 002834 220 SGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRF 299 (875)
Q Consensus 220 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 299 (875)
.-|.-+....+|+..|+-..+...-|+ ....-..+.+.|.+.
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~n--------------------------------------ag~lkmnigni~~kk 250 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPN--------------------------------------AGILKMNIGNIHFKK 250 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCC--------------------------------------Cceeeeeecceeeeh
Confidence 344445566777777777776666664 112222344566777
Q ss_pred CChhHHHHHhhhcCC--CCc------cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhh
Q 002834 300 GRTEEAELLFRRMKS--RDL------VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKV 371 (875)
Q Consensus 300 g~~~~A~~~~~~~~~--~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 371 (875)
..+..|+++++.... |++ ...+.+--.+.+.|+++.|+..|+...+.. |+-.+-..++-.+.-.|+.+.
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHH
Confidence 888888888876543 221 123344446788999999999999988865 888877777777777788888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHH-----HHHhccC--ChhHHHHHHH
Q 002834 372 GKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSML-----DAFSESG--YNSQFLNLLN 444 (875)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g--~~~~a~~~~~ 444 (875)
.++.|..++.....++.. - |.+.. ..|+....|.-| .-.-+.+ +.++++-.--
T Consensus 328 mkeaf~kli~ip~~~ddd-k-------yi~~~------------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ 387 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDD-K-------YIKEK------------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA 387 (840)
T ss_pred HHHHHHHHhcCCCCCCcc-c-------ccCCc------------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888887765544433 0 11110 111222222111 1111111 1122222222
Q ss_pred HHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 002834 445 CMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRN 524 (875)
Q Consensus 445 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 524 (875)
+++.--+.||-.. -- +.. ++.+...... +.-...-..-..-|.+.|+++.|.+++.-..++ |
T Consensus 388 kiiapvi~~~fa~---g~---------dwc---le~lk~s~~~--~la~dlei~ka~~~lk~~d~~~aieilkv~~~k-d 449 (840)
T KOG2003|consen 388 KIIAPVIAPDFAA---GC---------DWC---LESLKASQHA--ELAIDLEINKAGELLKNGDIEGAIEILKVFEKK-D 449 (840)
T ss_pred HHhccccccchhc---cc---------HHH---HHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc-c
Confidence 2222222222110 00 011 1111111000 000011112233466778888888777776665 3
Q ss_pred cccHHHHHHH-----hhc-CCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHH
Q 002834 525 LVTFNPVISG-----YAN-CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLL 598 (875)
Q Consensus 525 ~~~~~~l~~~-----~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 598 (875)
..+-++...- |.+ -.++-.|.+.-+.....+-.. ....+.--
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn--------------------------------~~a~~nkg 497 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN--------------------------------AAALTNKG 497 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC--------------------------------HHHhhcCC
Confidence 3332222111 111 122333333333322211111 11111111
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHH
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAA 675 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 675 (875)
......|+++.+.+.+..+.+..-......-.+.-.+.+.|++++|++.|-++.. .++.+.-.+.+.|-...+..+|
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 1122335555555555555544444223333344557788999999999987654 6777777888999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 676 LKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 676 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
++++-+.... ++.|+..+..|...|-+.|+-.+|.+++-+--+ -++-+.++...|...|....-+++|+.++++..
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999888764 555677778888899999999999998765533 244467788889999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 755 VEADCNVWGTLLGACR-IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 755 ~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
.+|+..-|..++..|. +.||+.+|...|+......|++...+-.|..+....|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999998885 57999999999999999999999888878777766653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=152.06 Aligned_cols=254 Identities=17% Similarity=0.153 Sum_probs=114.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHH-HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCH
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLL-PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSI 641 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 641 (875)
...+.+.|++++|++++++.......|+...|-.++ ..+...++.+.+...++.+...+..++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444466666777776665443332234444443333 344456667777777776666655566666667776 688999
Q ss_pred HHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 642 FSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 642 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
++|.++++..-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++++.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998887644 566778888999999999999999999987643 34566677777788999999999999999998
Q ss_pred HHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 719 KVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 719 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+ ..|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++++..|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 8 5675 5578889999999999999888887764 34566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...++.++...|+.++|.++++..-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999876653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-12 Score=126.38 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=173.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 680 (875)
.|+.-.+.+-++.+++..+..+..|--+..+|....+.++-++.|..... .|+.+|..-...+.-.+++++|+.=|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888877666677888889999999999999987664 466788888888888899999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC
Q 002834 681 DMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD 758 (875)
Q Consensus 681 ~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 758 (875)
+.+. +.|+ ...|.-+.-+..+.++++++...|++.++. ++--++.|+....++..+++++.|.+.++... +.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 4555 445666666777889999999999999884 44446789999999999999999999998874 4554
Q ss_pred ---------HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 759 ---------CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 759 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+.+...++-.-++ +|+..|+....+++++||+-..+|.+|+.+-.++|+.++|++++++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344433333 899999999999999999999999999999999999999999987643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=120.35 Aligned_cols=462 Identities=12% Similarity=0.105 Sum_probs=250.6
Q ss_pred hhhHHHHHhHhcCChhHHHHHhccCCC----CCeeeH-HHHHHHHHcCCCcchHHHHHHHHHhCCCCCC--hhhHHhHHH
Q 002834 183 VGNSLTSMYAKRGLVHDAYSVFDSIED----KDVVSW-NAVISGLSENKVLGDAFRLFSWMLTEPIKPN--YATILNILP 255 (875)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~ll~ 255 (875)
+...|..-|.-.....+|+..++-+.+ |+.... -.+-..+.+.+.+.+|+++|+..... .|+ ..+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~------ 274 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDM------ 274 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhh------
Confidence 334445556666677888888876654 222211 11234567888999999999887765 332 111
Q ss_pred HhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--CCccchHHHHHHHHcCCCH
Q 002834 256 ICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS--RDLVSWNAIIAGYASNDEW 333 (875)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 333 (875)
-+.+.+.+.-.+.+.|.+++|+.-|+...+ ||..+--.|+-.+..-|+.
T Consensus 275 -----------------------------rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 275 -----------------------------RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred -----------------------------HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 233445555567899999999999998764 6765544455555567999
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCC--hhHHH--
Q 002834 334 LKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSD--MEAAY-- 409 (875)
Q Consensus 334 ~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~-- 409 (875)
++..+.|.+|..-. ..||..-|.. ...+.+.. ++.+. +-+-.+.-.-+..+ .+++.
T Consensus 326 ekmkeaf~kli~ip-~~~dddkyi~------~~ddp~~~--ll~ea-----------i~nd~lk~~ek~~ka~aek~i~t 385 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIP-GEIDDDKYIK------EKDDPDDN--LLNEA-----------IKNDHLKNMEKENKADAEKAIIT 385 (840)
T ss_pred HHHHHHHHHHhcCC-CCCCcccccC------CcCCcchH--HHHHH-----------HhhHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998765 4555543310 00000000 00000 00111111111111 11111
Q ss_pred --HHHHhcCCCCcc---hHH------------------HHHHHHhccCChhHHHHHHHHHHHCCCCCChhh--HHHHHHH
Q 002834 410 --RTFLMICRRDLI---SWN------------------SMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT--ILTIIHF 464 (875)
Q Consensus 410 --~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~ 464 (875)
++..-+..|+-. -|. .-...+.++|+++.|+++++-..+..-+.-+.. -..++..
T Consensus 386 a~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~f 465 (840)
T KOG2003|consen 386 AAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRF 465 (840)
T ss_pred HHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHH
Confidence 111111222211 010 011234555666666666555544322111111 1111112
Q ss_pred hhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH
Q 002834 465 CTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA 544 (875)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 544 (875)
.....++..+.++-+..+... .- +......-.+.....|++++|
T Consensus 466 lqggk~~~~aqqyad~aln~d----ry--------------------------------n~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNID----RY--------------------------------NAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhcccchhHHHHHHHHHhccc----cc--------------------------------CHHHhhcCCceeeecCcHHHH
Confidence 222223333333333322211 00 111111111122334555555
Q ss_pred HHHHHhhhcCCCccH---HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc
Q 002834 545 FMTFSRIYARDLTPW---NLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC 621 (875)
Q Consensus 545 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 621 (875)
.+.+++....+...- ..+.-.+-..|+.++|++.|-++..- +.-+...+..+...|....+...+.+++..+...-
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 555555554444331 11222345566666666666554321 12233344444455555555556666555555444
Q ss_pred CCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 622 FDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 622 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
+.++.+...|.++|-+.|+-..|.+.+-.--. -++.+..-|...|....-+++++..|++..- ++|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 44888888888889888988888877654332 3556666677778888888889999988765 789988888887
Q ss_pred H-HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 699 S-ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 699 ~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
. ++.+.|++..|.++++...+ .++.+..++..|++.+...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 7 45568899999999988866 466677788888888777764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=134.05 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 732 (875)
.+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.+.. +.|+.. .|..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHh
Confidence 344555555555555555555555555544 333 334444444444445555555555554422 222211 2333
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++-.|.++++++.|+-.|+++. ..|. .+....+...+.+.|+.++|.+.+++++-++|.|+-.-+..+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 4445555555555555555442 3442 2334444444445555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|+..++.+++
T Consensus 575 eal~~LEeLk~ 585 (638)
T KOG1126|consen 575 EALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-10 Score=113.57 Aligned_cols=312 Identities=13% Similarity=0.091 Sum_probs=139.5
Q ss_pred HHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhH--HHHHHHhhccCchhh
Q 002834 396 VSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITI--LTIIHFCTTVLREGM 473 (875)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~ 473 (875)
...+.+.|..+.|+..|......-+..|.+.+....-.-+.+.+..+. .|...|..-. -.+..++......+.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777766555555555443332222222221111 1111111111 122334444445555
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C----CcccHHHHHHHhhcCCChHHHHHHH
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R----NLVTFNPVISGYANCGSADEAFMTF 548 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~~~~~~A~~~~ 548 (875)
+.+-.......|+ +.+..+-+....+.....++++|+.+|+++.+. | |..+|+.++-.-....++.--....
T Consensus 246 ~~~k~e~l~~~gf---~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 246 ALQKKERLSSVGF---PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHhccC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 5555555566666 555555566666666777778888888777764 3 4556655543321111111111111
Q ss_pred HhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchH
Q 002834 549 SRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 549 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
-.+.+--+.+...+.+.|.-.++.++|+..|++..+. .|.. ..++.+-.-+....+...|.+.+..+++-++.|-..
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 1222233333444444445555555555555554432 2221 122222223333333344444444444444334444
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
|-.|..+|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......| ..+...+..|...+-+.
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEEL 479 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHH
Confidence 44444444444444444444443332 234444444444444444444444444444432 22333444444444444
Q ss_pred CcHHHHHHHHHHhH
Q 002834 705 GLVDEGLEIFRSIE 718 (875)
Q Consensus 705 g~~~~a~~~~~~~~ 718 (875)
++.++|..+|++..
T Consensus 480 ~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYV 493 (559)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=131.03 Aligned_cols=202 Identities=12% Similarity=-0.021 Sum_probs=168.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH- 691 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 691 (875)
.+++..+..+..|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhh
Confidence 344455558899999999999999999999999998873 456888888888899999999999999865 34443
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 768 (875)
..|..+...|.+.++++.|.-.|+++.+ +.|... ...+++..+.+.|+.|+|+++++++. .+| |+..--.-...
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3466677789999999999999999966 888754 77888899999999999999999984 455 55444455566
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...++.++|.+.+|++.++-|+++..|.++|.+|.+.|+.+.|+.-+-.+-+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677899999999999999999999999999999999999999999988777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-08 Score=103.82 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCC--C----cccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 002834 495 IGNAILDAYAKCRNIKYAFNVFQSLLEKR--N----LVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAE 568 (875)
Q Consensus 495 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 568 (875)
.+..+...|-..|+++.|..+|++..+-| . ..+|......-.++.+++.|.++.+...-....+- ..+..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----~~~yd 464 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----LEYYD 464 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----hhhhc
Confidence 45667788888888888888888887753 1 23455555555566677777776665522111110 11122
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHh
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIF 648 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (875)
.+.+-++ .+++ +...+...+..-...|-++.-+.+++.++...+-++.+.......+....-++++.++|
T Consensus 465 ~~~pvQ~-rlhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 465 NSEPVQA-RLHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCCcHHH-HHHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222111 1111 12233334444445566777788888888888777777777777777788889999999
Q ss_pred ccCCC----CCh-hhHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HhhcCcHHHHHHHHHHhH
Q 002834 649 QCHPQ----KDV-VMLTAMIGGYAMH---GMGKAALKVFSDMLELGVNPDHVVITAVLSA--CSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 649 ~~~~~----~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~ 718 (875)
++... |++ ..||+.+.-+.+. -..+.|..+|++.++ |.+|...-+..|+-+ --..|....|.++++++.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98765 555 4788776655532 267899999999998 677765443333322 223577777777777765
Q ss_pred H
Q 002834 719 K 719 (875)
Q Consensus 719 ~ 719 (875)
.
T Consensus 614 ~ 614 (835)
T KOG2047|consen 614 S 614 (835)
T ss_pred h
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-11 Score=128.18 Aligned_cols=252 Identities=12% Similarity=0.033 Sum_probs=173.3
Q ss_pred HhcCCHHHHHHHHHhhccC-CCcccHH--HHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEK-RNLVTFN--PVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~-p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 577 (875)
.+.|+++.|...+.++.+. |+..... .....+...|+++.|...++++.+.++.. +..+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 5667777777777766654 3332222 22445666777777777777775555444 6667777788888888888
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---C
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---K 654 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 654 (875)
++..+.+.+..++. .+..+-. ..+..++....+..+.+...+.++.++. .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~~--------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLEQ--------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHHH--------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 88888877644321 1110000 0111122222233345555566666554 4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
++.....+...+...|+.++|.+++++..+. +||.... ++.+....++.+++++..++..+ ..|+ ...+.++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~l 334 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTL 334 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHH
Confidence 6777888889999999999999999998873 5555322 23344456899999999998877 3454 4468888
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
+..+.+.|++++|.+.++... ..|+...+..+..++...|+.+.|...+++.+.+.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999998885 77998888889999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-11 Score=128.68 Aligned_cols=244 Identities=9% Similarity=0.004 Sum_probs=167.4
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHh--cHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIM--SLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
.+.|+++.|...+.++.+. .|+..... .....+...|+.+.|...++.+.+..+.++.+...+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555432 33332222 1123444455555555555555555555666677777778888888888
Q ss_pred HHHhccCCCC---Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 645 SKIFQCHPQK---DV--------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 645 ~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8777766541 11 13333444444455566667777766443 345677788888899999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+++..+ ..|+.... ++......|+.+++.+.+++.. ..| |+..+..+...|...+++++|++.++++++..|+
T Consensus 286 L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 988866 45555322 2333445699999999998874 556 4566788889999999999999999999999998
Q ss_pred CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 792 NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 792 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.. +..|+.++.+.|+.++|.++++.-
T Consensus 361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 361 AYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 678999999999999999987754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-08 Score=100.06 Aligned_cols=439 Identities=12% Similarity=0.093 Sum_probs=222.0
Q ss_pred hhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChh-hHHHHHH
Q 002834 286 VSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSV-TLVSLLP 361 (875)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~ 361 (875)
...|-.-...-...+++..|+.+|+.... +++..|--.+..-.++.++..|..++++....- |-.. .|.--+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHH
Confidence 33444444444456777888888887764 566667777777788888888888888877642 3321 1222222
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHH
Q 002834 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
.--..|++..|+++|..-.+. . |+...|.+.|..-.+.+.++.|..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~--------------------------------P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--E--------------------------------PDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--C--------------------------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 222345555555555544433 2 444444444444444444444444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh-cCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 002834 442 LLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT-GLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520 (875)
Q Consensus 442 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 520 (875)
+|++.+- +.|+..+|.-..+.=.+.|....+..+++.+++. |- .......+.++...-.++..++.|.-+|+-..
T Consensus 196 IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~--d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 196 IYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD--DEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 2344444444444444444444444444444432 10 01222334444444455666666666665444
Q ss_pred cC-C---CcccHHHHHHHhhcCCChHHHHHH--------HHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 521 EK-R---NLVTFNPVISGYANCGSADEAFMT--------FSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 521 ~~-p---~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
.. | ....|.....--.+-|+....+.. ++++...|+.. |--.++.-...|+.+...++|++....
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 32 2 122333333222333443332222 23344444444 444555556677888888888887754
Q ss_pred CCCCCcc-------hHhcHHHHh---hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHh----HhcCCHHHHHHHhccC
Q 002834 586 GMKPDAV-------TIMSLLPVC---SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLY----AKCGSIFSASKIFQCH 651 (875)
Q Consensus 586 g~~p~~~-------~~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~ 651 (875)
++|-.. .|.-+=-+| ....+++...++++..++.-++...++.-+--+| .++.++..|.+++...
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455221 111111111 2345667777777777765444333333333333 3456666666666554
Q ss_pred CC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH
Q 002834 652 PQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 652 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
.. |-..++...|..-.+.++++....+|++.++-+ +-|-.+|......-...|+.+.|..+|+-+.....+.-....
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 32 444555555555556666666666666666532 223445555555455566666666666655442111111224
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHH
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLG 767 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 767 (875)
|-..++.-...|.++.|..+++... ..+-..+|.++..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 4445555555666666666666553 2223345555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-11 Score=125.24 Aligned_cols=215 Identities=9% Similarity=-0.037 Sum_probs=117.9
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHH----HHHHHHHHcCChH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLT----AMIGGYAMHGMGK 673 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~ 673 (875)
....|+.+.|...++.+.+..+.++.+...+...|...|++++|.+.+....+ .+...+. ....++...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444445555555556666666666555555443 1211111 1111112222223
Q ss_pred HHHHHHHHHHHCCC---CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH---HHHHHHHhhcCCChHHHH
Q 002834 674 AALKVFSDMLELGV---NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ---YASLVDLLARGGQISDAY 747 (875)
Q Consensus 674 ~A~~~~~~m~~~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~ 747 (875)
++.+.+.++.+... +.+...+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+.+.
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 33344444444311 12555666666677777777777777777765 3344331 111112223346666677
Q ss_pred HHHHhCC-CCC-CH--HHHHHHHHHHHhcCChhHHHHHHH--HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 748 SLVNRMP-VEA-DC--NVWGTLLGACRIHHEVELGRVVAN--RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 748 ~~~~~~~-~~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.+++.. ..| |+ ....++.+.|...|++++|++.++ ++++..|++.. +..++.++.+.|+.++|.+++++-
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7766653 334 33 456677788888888888888888 56667776544 558888888888888888877653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-10 Score=106.51 Aligned_cols=261 Identities=16% Similarity=0.152 Sum_probs=158.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHH
Q 002834 433 SGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYA 512 (875)
Q Consensus 433 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 512 (875)
+++.++|.++|-+|.+. | +.+..+.-+|.+.|.+.|..+.|
T Consensus 48 s~Q~dKAvdlF~e~l~~----d-----------------------------------~~t~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----D-----------------------------------PETFEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hcCcchHHHHHHHHHhc----C-----------------------------------chhhHHHHHHHHHHHhcchHHHH
Confidence 46788888888888763 2 23333445677778888888888
Q ss_pred HHHHHhhccCCCcc------cHHHHHHHhhcCCChHHHHHHHHhhhcCCC-cc--HHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 513 FNVFQSLLEKRNLV------TFNPVISGYANCGSADEAFMTFSRIYARDL-TP--WNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 513 ~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
+++-+.+..+||.. ..-.|..-|...|-++.|+.+|..+.+.+. .. ...|+..|-...+|++|+++-+++.
T Consensus 89 IRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 89 IRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888876543 334456667788888888888888766332 22 6778888888888888888888888
Q ss_pred HCCCCCCcc----hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh---
Q 002834 584 AQGMKPDAV----TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV--- 656 (875)
Q Consensus 584 ~~g~~p~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 656 (875)
+.+-++..+ .|..+........+++.|...+..+...++..+.+.-.+.+.+...|+++.|.+.++.+.+.|.
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 776555433 2333333444445566666666666666666666666666666666666666666666655433
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 -VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+...|..+|.+.|+.++.+..+.++.+.. +....-..+...-....-.+.|..++.+-.+ -+|+...+..+++
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~ 323 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHH
Confidence 244455566666666666666666666532 2222222222222222223344443333322 3566665555555
Q ss_pred Hh
Q 002834 736 LL 737 (875)
Q Consensus 736 ~~ 737 (875)
.-
T Consensus 324 ~~ 325 (389)
T COG2956 324 YH 325 (389)
T ss_pred hh
Confidence 44
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-10 Score=110.94 Aligned_cols=325 Identities=10% Similarity=0.038 Sum_probs=218.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC-CccHHHHHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD-LTPWNLMIRVYAE 568 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 568 (875)
..|...+-.....+.+.|....|++.|.....+ -+..|.+.+....-..+.+.+..+...+...+ ...--.+..+|..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 444444444555566778888888888877765 44555555444333333333322222221110 0001234455666
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC---CchHHHHHHHHhHhcCCHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD---GVRLNGALLHLYAKCGSIFSAS 645 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~ 645 (875)
....++++.-.......|..-+...-+....+.-...+++.+..+|+.+.+..+- +..++..++-.-..+.++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 6677777777777777765544433333334445667888888888888888554 5556655543333333333222
Q ss_pred HHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 646 KIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
+..-.+.+-.+.|...+.+-|.-.++.++|+..|++..+. .|.. ..|+.+.+-|....+...|.+.++++.+ +.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~ 394 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---IN 394 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cC
Confidence 2222333334455666677778888889999999998884 5554 4566666688888899999999988876 55
Q ss_pred C-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 725 P-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 725 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
| |-..|..|+.+|.-.+...=|+-++++.. .+| |+..|.+|..+|.+.++.+.|+..+++++....-+..+++.||+
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5 45588889999999999888998888885 566 77889999999988999999999999999888777888999999
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 002834 802 LYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 802 ~~~~~g~~~~A~~~~~~~~ 820 (875)
+|.+.++.++|...+++-.
T Consensus 475 Lye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 9999999999988765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-09 Score=108.50 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=172.6
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
..-|...+++....++.+.+.+.. ++....+..-|..+...|+..+-..+=.++... | .+.+|-++.--|...|
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d----pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD----PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC----CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Confidence 334455566667777776666654 555666666666777777777666666666654 4 5678888877777778
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHG 615 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~ 615 (875)
+..+|.+.|.+....|+.- |..+...|+-.|..++|+..+....+. -|.. .-+..+---|...+..+.|.+++.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 8888888888776555444 888888888888888888777766542 1111 111122223444555666666665
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCC
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----G--VNP 689 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p 689 (875)
.+....+.++.+.+.+.-.....+ .+.+|..+|+..+.. + ..-
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~-------------------------------~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYE-------------------------------EYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHh-------------------------------hhHHHHHHHHHHHHHhhhccccccc
Confidence 555555555555555544444444 444555555444310 0 011
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGA 768 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 768 (875)
-..+++.|..+|.+.+++++|+..+++... -.+-+..++..++-+|...|+++.|.+.+.+.. ..|+..+-..+++.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 234677788888888888898888888876 233456688888888888888888888887774 77877766666654
Q ss_pred H
Q 002834 769 C 769 (875)
Q Consensus 769 ~ 769 (875)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 3
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=110.76 Aligned_cols=256 Identities=11% Similarity=-0.025 Sum_probs=199.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
...-..-+...+++.+..+++....+. .++....+..-|.++...|+...-..+-..+++.-|..+..|-++.--|.-.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 344455567788888888888887765 2445555555566667777777777777777777777888888888888888
Q ss_pred CCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQKD---VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|+.++|++.|.+...-| ...|-.....|+..|..++|+..+...-+. ++-....+..+.--|.+.+..+.|.++|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876533 358999999999999999999999887764 33334444555567888999999999998
Q ss_pred HhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 716 SIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-----VEA----DCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 716 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
++.. +-|+. ..++-++-..-..+.+.+|..+|+... ..+ =.++|++|+.+|++.+.++.|+..++++
T Consensus 405 ~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 8854 77754 466677777777889999998887763 111 2356888999999999999999999999
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.+.|+++.+|-.+|-+|.-.|+.+.|++.+.+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9999999999999999999999999999976653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-10 Score=118.75 Aligned_cols=259 Identities=12% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-CCcc--cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK-RNLV--TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQ 574 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~-p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 574 (875)
..+...|+.+.|.+.+.+..+. |+.. ........+...|+++.|...++.+.+.+|.. +..+...|.+.|++++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 3444555555555555554432 3322 22223444555555555555555554443322 5555666677788887
Q ss_pred HHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-
Q 002834 575 ALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ- 653 (875)
Q Consensus 575 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 653 (875)
|.+++..+.+.++.+. ..+..+-. ..+..++..-......+...+..+..+.
T Consensus 206 a~~~l~~l~k~~~~~~-~~~~~l~~--------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDD-EEFADLEQ--------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHH--------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 8887777777654322 11110000 0000111111112223344444554543
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH--HHHH-HHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 654 --KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI--TAVL-SACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 654 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
.+...+..++..+...|+.++|.+++++..+. .||.... ..+. ......++.+.+.+.+++..+.....|+..
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 47788888999999999999999999999985 4554421 1122 233446788899999988877433333325
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNR--M-PVEADCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
...+++..+.+.|++++|.+.++. . ...|++..+..+...+...|+.+.|.+++++.+.+
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667889999999999999999994 3 46899888889999999999999999999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-10 Score=109.27 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=147.0
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
.-.|+.-.|...|+........++.. |.-+-.+|....+.++....|..+.+.++.++.+|..-..++.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34556666666666665543222221 55555566666666666666666666666677777777777777888888888
Q ss_pred HhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 647 IFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 647 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
-|++...- ++..|-.+.-+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+.+.+ +
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 88876653 3345555555556777888888888888875 555566777777788888888888888888876 4
Q ss_pred CCC-------hhHHH--HHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 724 KPT-------PEQYA--SLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 724 ~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.|+ +..+. .++-.-. .+++.+|..++++.. .+|.. ..+.+|...-..+|+.++|++++++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444 11111 1111112 378888888888874 66654 6677888877888888888888888876643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-08 Score=94.74 Aligned_cols=459 Identities=11% Similarity=0.056 Sum_probs=269.4
Q ss_pred hhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccC
Q 002834 184 GNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260 (875)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 260 (875)
|-.....=...++...|..+|++... +++..|---+..-.++..+..|..+++..... .|-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPR-------------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPR-------------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cch--------------
Confidence 33333333345566667777776654 34445555556666666777777777665532 221
Q ss_pred CccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcC--CCCccchHHHHHHHHcCCCHHHHHH
Q 002834 261 DEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMK--SRDLVSWNAIIAGYASNDEWLKALN 338 (875)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 338 (875)
-...|..-+.+--..|++..|+++|+... +|+..+|++.|+.-.+.+.++.|..
T Consensus 140 ------------------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 140 ------------------------VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred ------------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 11123333334445677778888887654 4778888888888777888888888
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC
Q 002834 339 LFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPY-LEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR 417 (875)
Q Consensus 339 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 417 (875)
+|++.+- +.|+..+|.--.+---+.|++..++.++...++.-. ......++.++...-.++..++.|.-+|+-...
T Consensus 196 IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765 558877777766666677777777777766554321 111111344444444445555555555543211
Q ss_pred ----C-CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCc
Q 002834 418 ----R-DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTE 492 (875)
Q Consensus 418 ----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 492 (875)
. ....|......--+-|+.....+..-.= -.--++..++.+ +.+
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K---------------------------Rk~qYE~~v~~n----p~n 321 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK---------------------------RKFQYEKEVSKN----PYN 321 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh---------------------------hhhHHHHHHHhC----CCC
Confidence 1 1112222222222222221111111000 000011111111 344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCc---ccHHHHH----H----HhhcCCChHHHHHHHHhhhc---CCCc
Q 002834 493 HNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNL---VTFNPVI----S----GYANCGSADEAFMTFSRIYA---RDLT 557 (875)
Q Consensus 493 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~---~~~~~l~----~----~~~~~~~~~~A~~~~~~~~~---~~~~ 557 (875)
-.++-..++.-...|+.+...++++..... |.. ..|.-.| + .-....+.+.+.++++...+ ....
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 444555555566666777777777666553 211 1222111 1 11345667777777766543 2222
Q ss_pred c----HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHH
Q 002834 558 P----WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLH 633 (875)
Q Consensus 558 ~----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 633 (875)
+ |......-.++.+...|.+++.... |..|...+|...|..-.+.+.++....+++..+..++.+-..+.....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 2 4555555577888888888887765 567888888888888888888888888888888888888888888888
Q ss_pred HhHhcCCHHHHHHHhccCCC-CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-----h
Q 002834 634 LYAKCGSIFSASKIFQCHPQ-KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS-----H 703 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-----~ 703 (875)
.-...|+.+.|..+|+-... |. ...|.+.|.--...|..++|..+++++++. .+....|.++..--. +
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccc
Confidence 88888899999988886554 32 346777777777888899999999988874 344445555443111 2
Q ss_pred cC-----------cHHHHHHHHHHhHHH
Q 002834 704 AG-----------LVDEGLEIFRSIEKV 720 (875)
Q Consensus 704 ~g-----------~~~~a~~~~~~~~~~ 720 (875)
.| .+..|..+|+++...
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 23 456777888777653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-06 Score=91.99 Aligned_cols=439 Identities=13% Similarity=0.136 Sum_probs=223.7
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH----------HHHHHHHHhcCC----
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG----------KEIHGYFLRHPY---- 384 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~~~---- 384 (875)
.-+-+..-.-+.++..--+..++.....| .-|..|++++.+.|..+++-.+. +.+=....++..
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 34455555566677777777777777777 46777888887777665442221 000011111100
Q ss_pred ---------------CCchhhHHHHHHHHHhcCCChhHHHHHHHh-----------c------CCCCcchHHHHHHHHhc
Q 002834 385 ---------------LEEDAAVGNALVSFYAKCSDMEAAYRTFLM-----------I------CRRDLISWNSMLDAFSE 432 (875)
Q Consensus 385 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~------~~~~~~~~~~li~~~~~ 432 (875)
...+. .+....+-+.+..+.+.-.+++.+ . ...|+...+.-+.++..
T Consensus 918 vaYerGqcD~elI~vcNeNS-lfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENS-LFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EeecccCCcHHHHHhcCchh-HHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 00111 333333333333333332222211 1 11244444555566666
Q ss_pred cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHH
Q 002834 433 SGYNSQFLNLLNCMLMEGIR-PDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKY 511 (875)
Q Consensus 433 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 511 (875)
.+-..+-++++++.+-.+.. ........++-.-+-..+...+.++...+-.... -.+.......+-+++
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa----------~~ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA----------PDIAEIAIENQLYEE 1066 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc----------hhHHHHHhhhhHHHH
Confidence 66666666666665532211 1111111111111122233334444443333221 223334445555666
Q ss_pred HHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc
Q 002834 512 AFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA 591 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 591 (875)
|..+|+.... +..+.+.|+.-- +..+.|.+.-++..+ +..|+.+.++-.+.|...+|++-|-+. .|+
T Consensus 1067 AF~ifkkf~~--n~~A~~VLie~i---~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1067 AFAIFKKFDM--NVSAIQVLIENI---GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred HHHHHHHhcc--cHHHHHHHHHHh---hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 6666665432 223333333322 344444444433322 234777777777888887777766442 355
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCC
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGM 671 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 671 (875)
..|..++..+.+.|.++.-..++.++.+.. ..+.+-..|+-+|++.+++.+-++.+.. ||+........-|...|.
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhh
Confidence 677778888888888877777766655543 3455556777788888877776665432 455445555566666666
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 672 GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
++.|.-+|... ..|..|...+.+.|.+..|...-+++ -+..+|-.+..+|...+.+.-|.-.
T Consensus 1210 y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC-- 1271 (1666)
T KOG0985|consen 1210 YEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC-- 1271 (1666)
T ss_pred hHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--
Confidence 66665555432 33455555566666666655544333 1234555555555555444333210
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 752 RMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 752 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
.+..---..-...|+..|...|-+++-+..++..+.++.-+-+.+.-|+-+|++
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 000111122344556666666666666666666666666666666666655554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-06 Score=91.97 Aligned_cols=614 Identities=13% Similarity=0.146 Sum_probs=353.3
Q ss_pred HHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC--CCeeeHHHHHHHHHcCCCc
Q 002834 151 IVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED--KDVVSWNAVISGLSENKVL 228 (875)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 228 (875)
.++..++..|.++.+.-. ..+.|..||.. .++....+ -++|.+.++...|.+ +....++.+...+...+..
T Consensus 486 KVi~cfAE~Gqf~KiilY---~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILY---AKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHhcchhHHHHH---HHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhh
Confidence 445555555555544333 45678888754 44555555 567888887777765 4455677777777777777
Q ss_pred chHHHHHHHHHhCCCCCChhhHHh-HHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHH
Q 002834 229 GDAFRLFSWMLTEPIKPNYATILN-ILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAEL 307 (875)
Q Consensus 229 ~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (875)
..+..++-...+. -.|+....-+ +|.. .+..+-++.+.++..+.. +..-+..+.+.|.+.|-...|.+
T Consensus 559 Qq~TSFLLdaLK~-~~Pd~g~LQTrLLE~--------NL~~aPqVADAILgN~mF--tHyDra~IAqLCEKAGL~qraLe 627 (1666)
T KOG0985|consen 559 QQCTSFLLDALKL-NSPDEGHLQTRLLEM--------NLVHAPQVADAILGNDMF--THYDRAEIAQLCEKAGLLQRALE 627 (1666)
T ss_pred hhhHHHHHHHhcC-CChhhhhHHHHHHHH--------HhccchHHHHHHHhcccc--ccccHHHHHHHHHhcchHHHHHH
Confidence 7777776665542 3454322211 1111 122223333333333222 23337778889999999999999
Q ss_pred HhhhcCC--CCccch----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHh
Q 002834 308 LFRRMKS--RDLVSW----NAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLR 381 (875)
Q Consensus 308 ~~~~~~~--~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (875)
.+..+.. +.++.- ---+..|.-.-.++.+++.++.|...+ ++-|..+...+..-|...-..+...++|+....
T Consensus 628 hytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N-irqNlQi~VQvatky~eqlg~~~li~lFE~fks 706 (1666)
T KOG0985|consen 628 HYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN-IRQNLQIVVQVATKYHEQLGAQALIELFESFKS 706 (1666)
T ss_pred hcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhcc
Confidence 8887763 111111 011234555567899999999999988 888877766666655554444444444443322
Q ss_pred c-----------CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC-------------------C-----CcchH---
Q 002834 382 H-----------PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR-------------------R-----DLISW--- 423 (875)
Q Consensus 382 ~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-----~~~~~--- 423 (875)
. ++..|+. +.-..|.+.++.|++.+.+++.++-.- | |..-+
T Consensus 707 ~eGL~yfLgSivn~seDpe-vh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhd 785 (1666)
T KOG0985|consen 707 YEGLYYFLGSIVNFSEDPE-VHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 785 (1666)
T ss_pred chhHHHHHHHHhccccCch-HHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHH
Confidence 1 2233333 667788999999999998887765411 1 11111
Q ss_pred ----------HHHHHHHhccCChhHHHHHHHHHHHCCCCCC-----------hhhHHHHHHHhhccCchhhHHHHHHHHH
Q 002834 424 ----------NSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-----------SITILTIIHFCTTVLREGMVKETHGYLI 482 (875)
Q Consensus 424 ----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 482 (875)
...|..|.+.=++...-.+...+++-.+.-+ .+....+..-+-+.++.......++..+
T Consensus 786 lvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 786 LVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1123334433333222222222222111100 0111222333444555555666666666
Q ss_pred HhcCCCCCCchhHHHHHHHHHHhcCCHHHHHH---------HHHhhccCCCc----ccH------HHHHHHh--------
Q 002834 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFN---------VFQSLLEKRNL----VTF------NPVISGY-------- 535 (875)
Q Consensus 483 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~---------~~~~~~~~p~~----~~~------~~l~~~~-------- 535 (875)
..| ..++.++|+|...|..+++-.+-.- +..+.-++.|+ ++| ..+|+.|
T Consensus 866 ~eG----~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~ 941 (1666)
T KOG0985|consen 866 QEG----SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKS 941 (1666)
T ss_pred hcc----CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHH
Confidence 667 6788899999888876655433210 11111111011 111 1122222
Q ss_pred -----hcCCChHHHHHH-----------HHhh------hcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 536 -----ANCGSADEAFMT-----------FSRI------YARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 536 -----~~~~~~~~A~~~-----------~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
.+..+.+.=.++ .+.. ...++...+.-++++...+-+.+-+++++++.-. |+..+
T Consensus 942 ~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fs 1018 (1666)
T KOG0985|consen 942 QARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFS 1018 (1666)
T ss_pred HHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccc
Confidence 222232221111 2222 2235666888999999999999999999998643 33222
Q ss_pred ----HhcHHHHhhcccchHHHHHHHHHHHHh-cCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---------------
Q 002834 594 ----IMSLLPVCSQMASVHLLRQCHGYVIRA-CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------------- 653 (875)
Q Consensus 594 ----~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 653 (875)
...++-.-+-..+... +.+++.+. +.+.+.+. ......+-+++|..+|++...
T Consensus 1019 e~~nLQnLLiLtAikad~tr---Vm~YI~rLdnyDa~~ia----~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIKADRTR---VMEYINRLDNYDAPDIA----EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred cchhhhhhHHHHHhhcChHH---HHHHHHHhccCCchhHH----HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence 2222211111122222 22222222 11111111 112222333444444432211
Q ss_pred ----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 654 ----------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 654 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
..+..|..+..+-.+.|...+|++-|-+ .-|...|.-++..+.+.|.+++-.+++..+++ ..-
T Consensus 1092 dRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~ 1164 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVR 1164 (1666)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhc
Confidence 2345799999999999999999988755 24567899999999999999999999976655 455
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 724 KPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.|... +.|+-+|++.+++.|-.+++. -|+..-......-|...|.++.|+-.|. +.+-|..|+..+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHH
Confidence 66555 458889999999998777765 4777777888899999999999887776 445577888888
Q ss_pred HhcCCchhHHHHHHHH
Q 002834 804 AADARWDGVVEIRKLM 819 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~ 819 (875)
...|++..|...-++.
T Consensus 1231 V~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 8888888887754443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-08 Score=98.24 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=108.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHH-hhcCcHHHHHHHHHHhHHHhCCCCChh-HHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL-SAC-SHAGLVDEGLEIFRSIEKVQGIKPTPE-QYA 731 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~ 731 (875)
+..+|..|+.+|...|++.+|.-+-+...+. ++-+..+...+. ..| .....-++|.+++++..+ +.|+-. ...
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVN 442 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHH
Confidence 5567888888888888888888877776654 445555655443 222 233456889999988755 788854 778
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.+.+.+.+.|+.++++.++++.. ..||....+.|.......+.+.+|...|..++.++|++-.+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 88999999999999999999874 78899999999999999999999999999999999987554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-06 Score=89.25 Aligned_cols=556 Identities=14% Similarity=0.068 Sum_probs=298.1
Q ss_pred HHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchH
Q 002834 152 VLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDA 231 (875)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (875)
.+.+......+..|..+++.+..... -.--|..+.+-|+..|+++.|.++|-+.. .++--|..|.++|+|+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34455666777888888877665532 22356777788999999999999987643 355668889999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhh
Q 002834 232 FRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRR 311 (875)
Q Consensus 232 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (875)
.++-.+.. .|.. ....|-+-..-+-+.|++.+|.+++-.
T Consensus 811 ~kla~e~~----~~e~-------------------------------------t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 811 FKLAEECH----GPEA-------------------------------------TISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHhc----Cchh-------------------------------------HHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 98876653 2221 344455555556678999999999988
Q ss_pred cCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchh
Q 002834 312 MKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD--SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDA 389 (875)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 389 (875)
+.+|+. .|..|-+.|..+..+++..+- .|| ..|-..+-.-+-..|++..|...|-. .|
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~fle---a~------ 909 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLE---AG------ 909 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHh---hh------
Confidence 888874 477888889999888887663 333 23455566667777888887766533 22
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-----hHHH-------------------HHHHHhccCChhHHHHHHHH
Q 002834 390 AVGNALVSFYAKCSDMEAAYRTFLMICRRDLI-----SWNS-------------------MLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-------------------li~~~~~~g~~~~a~~~~~~ 445 (875)
-+.+-+++|...+-+++|.++-+.-...|.. .|.. -|...+.++-++-|.++-+-
T Consensus 910 -d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 910 -DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred -hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 5677888888888888888887654333221 1211 11122233333333333322
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCC-----CchhHH---------HHHHHHHHhcCCHHH
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGD-----TEHNIG---------NAILDAYAKCRNIKY 511 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~---------~~li~~~~~~g~~~~ 511 (875)
..+.. .|... .-+...+-..|+++.+.+-+-+.++.+..... |+..-. ...+.++.+.+++..
T Consensus 989 ~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ 1065 (1636)
T KOG3616|consen 989 AAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAA 1065 (1636)
T ss_pred hhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHH
Confidence 22211 11111 11112234556666666555555443221000 110000 122345555556666
Q ss_pred HHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc
Q 002834 512 AFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA 591 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 591 (875)
|.++-+.--...-...++--..+....|++.+|+.++-+..+++.. ++.|...+-|.+|+++-+.- -|..
T Consensus 1066 aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri~kdy-----lp~q 1135 (1636)
T KOG3616|consen 1066 AERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRIAKDY-----LPHQ 1135 (1636)
T ss_pred HHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHHHHhh-----ChhH
Confidence 6555443222111122333344455667777777777665555532 34455666666666554332 1110
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC------------------
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ------------------ 653 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------ 653 (875)
.. + .-.++-....+.|-..+..+..-..-....|++..|...+-++..
T Consensus 1136 ~a---~-----------iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaad 1201 (1636)
T KOG3616|consen 1136 AA---A-----------IQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAAD 1201 (1636)
T ss_pred HH---H-----------HHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHh
Confidence 00 0 001122223333433444444444445556666666655555432
Q ss_pred ---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 654 ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 654 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
.|.....+...++...|..+.|.+++--.-. -.-.+.+++....|.+|.++-++..- ...
T Consensus 1202 l~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p--~~~ 1270 (1636)
T KOG3616|consen 1202 LSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDP--EME 1270 (1636)
T ss_pred hhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCc--hhh
Confidence 1112222222233333333333333321100 11235667777777766665443321 111
Q ss_pred CChh-H------------------HHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHH
Q 002834 725 PTPE-Q------------------YASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGA-CRIHHEVELGRVVANR 784 (875)
Q Consensus 725 p~~~-~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~ 784 (875)
|... + .-.-++.+..+++|++|++--++-..+|-..-|-.+-.+ +...|+..++..++++
T Consensus 1271 ~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q 1350 (1636)
T KOG3616|consen 1271 DEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQ 1350 (1636)
T ss_pred HHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1111 1 123467888899999998887776666655445544444 3456888888888776
Q ss_pred Hh-cccCCCCccHHHHH-HHHHhcC-CchhHHH
Q 002834 785 LF-EMEADNIGNYVVMS-NLYAADA-RWDGVVE 814 (875)
Q Consensus 785 ~~-~~~p~~~~~~~~l~-~~~~~~g-~~~~A~~ 814 (875)
-- -.+|.|-.+|-.+- ...++-| ++++|-.
T Consensus 1351 ~ga~anpanfniyk~i~ed~lakpgt~~~eay~ 1383 (1636)
T KOG3616|consen 1351 HGAPANPANFNIYKLIFEDMLAKPGTNCAEAYH 1383 (1636)
T ss_pred hCCCCCcccccHHHHHHHHHhcCCCcchHHHHH
Confidence 42 23565655555433 3333333 5555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-08 Score=101.19 Aligned_cols=475 Identities=13% Similarity=0.079 Sum_probs=252.4
Q ss_pred CCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHH
Q 002834 92 GVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAY 171 (875)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (875)
.++.+|..+|-+-. + -...|..|-... +|++++.+-+. .| .+.-...-.+-++++...|.-+.|-++
T Consensus 545 kkfk~ae~ifleqn--~---te~aigmy~~lh-kwde~i~lae~---~~-~p~~eklk~sy~q~l~dt~qd~ka~el--- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN--A---TEEAIGMYQELH-KWDEAIALAEA---KG-HPALEKLKRSYLQALMDTGQDEKAAEL--- 611 (1636)
T ss_pred hhhhHHHHHHHhcc--c---HHHHHHHHHHHH-hHHHHHHHHHh---cC-ChHHHHHHHHHHHHHHhcCchhhhhhh---
Confidence 34666766663211 1 122344444444 66666554332 23 222222333445555555555444433
Q ss_pred HHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhcc--CCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhh
Q 002834 172 VIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDS--IEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYAT 249 (875)
Q Consensus 172 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 249 (875)
+.+.--..+-|..|.+.|.+-.|.+.-.. ..-.|......+..++.+..-+++|-.+|+.+.. |+
T Consensus 612 ------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d--- 678 (1636)
T KOG3616|consen 612 ------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD--- 678 (1636)
T ss_pred ------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH---
Confidence 11222234567888888888777665422 1223444445555555555566666666666542 11
Q ss_pred HHhHHHHhccCCccccccchhHHHHHHHHhcccCCchh-HhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHH
Q 002834 250 ILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVS-VCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYA 328 (875)
Q Consensus 250 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 328 (875)
..+..+.+.. .+..+.++-+... +. .+. .-..-...+...|+++.|...|-+.. ..-..|.+-.
T Consensus 679 --kale~fkkgd---af~kaielarfaf----p~-evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai 743 (1636)
T KOG3616|consen 679 --KALECFKKGD---AFGKAIELARFAF----PE-EVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAI 743 (1636)
T ss_pred --HHHHHHHccc---HHHHHHHHHHhhC----cH-HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHh
Confidence 1111111111 1222222111110 00 011 01111222334566666665554331 1122344556
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHH
Q 002834 329 SNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAA 408 (875)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 408 (875)
....|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.++|-.. + .++-.|.+|.+.|++++|
T Consensus 744 ~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHH
Confidence 7788999999998887754 44455777888888999999988887532 1 567788999999999999
Q ss_pred HHHHHhcCCC--CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 409 YRTFLMICRR--DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 409 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
.++-++...| .+..|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+...++.+...-
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 9998887665 34456666667778888888887775432 2332 23445555555544444332211
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHH
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVY 566 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 566 (875)
..-..+...+..-|-..|++..|..-|-+.. -|.+.++.|..++-|++|.++-+.--..+.. ..++-..
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriaktegg~n~~--k~v~flw 947 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKTEGGANAE--KHVAFLW 947 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhccccccHH--HHHHHHH
Confidence 1112333455666677788888877665432 3556667777777777776665432211111 1122222
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
++.=--+.|.+++++. |+ ...-+.-.+..+.++.+..+-....+.... .+...+...+...|++++|-+
T Consensus 948 aksiggdaavkllnk~---gl------l~~~id~a~d~~afd~afdlari~~k~k~~--~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFDFAFDLARIAAKDKMG--EVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchhhHHHHHHHhhhccCc--cchhHHhhhhhhccchhhhhH
Confidence 3333334556665541 10 111223344556666666665555544433 334445556778899999988
Q ss_pred HhccCCCC
Q 002834 647 IFQCHPQK 654 (875)
Q Consensus 647 ~~~~~~~~ 654 (875)
.|-+..+.
T Consensus 1017 hyveaikl 1024 (1636)
T KOG3616|consen 1017 HYVEAIKL 1024 (1636)
T ss_pred hhHHHhhc
Confidence 88776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=126.59 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
.+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.+|++..+. .+.|+.....+++++.
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccc
Confidence 3344444444444444444444444431 233333444444555555555555555554431 1223444455555555
Q ss_pred cCCChHHHHHHHHh
Q 002834 739 RGGQISDAYSLVNR 752 (875)
Q Consensus 739 ~~g~~~~A~~~~~~ 752 (875)
..|+.++|.++..+
T Consensus 260 ~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 260 QAGRKDEALRLRRQ 273 (280)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 55555555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-08 Score=95.40 Aligned_cols=468 Identities=13% Similarity=0.090 Sum_probs=232.6
Q ss_pred HHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN 368 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 368 (875)
+..++.+.|++++|...+..+.+ ++...|-.+.-.+.-.|.+.+|..+-... .-++-....++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 45667778888888888877654 34455655655556667777777665442 1223333344444555666
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC--CcchHHH-HHHHHhccCChhHHHHHHHH
Q 002834 369 LKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR--DLISWNS-MLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~ 445 (875)
-++...+++.+...- .-.-+|..+.-..-.+.+|.++++++... +-...|. +.-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~------EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL------EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhH------HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 666666655543321 01233344433344566777777766443 3333443 33345556666666666665
Q ss_pred HHHCCCCCChhhHHHHHHHhhccC--chhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVL--REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
.++. .||+ |+..=+.+|..-+ .-..+++-.+.+.+.+- .. ++.+..+.+.
T Consensus 211 YL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~---~~-----------------~~f~~~l~rH----- 262 (557)
T KOG3785|consen 211 YLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNID---QE-----------------YPFIEYLCRH----- 262 (557)
T ss_pred HHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccc---cc-----------------chhHHHHHHc-----
Confidence 5543 2333 2222223332211 11112222222222111 00 0000000000
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ 603 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 603 (875)
+. .--.+-+.|++++-.+.+.=+..-..|+-.|.+.++..+|..+.+++ .|+. .+..++.+...
T Consensus 263 NL----------VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----~Ptt-P~EyilKgvv~ 326 (557)
T KOG3785|consen 263 NL----------VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----DPTT-PYEYILKGVVF 326 (557)
T ss_pred Ce----------EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----CCCC-hHHHHHHHHHH
Confidence 00 01123344555544443333333444555556677777776666554 2221 11122221111
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
.++..-......+.-|.+.|+-... ..+.--.++.+++.-..++++.+..
T Consensus 327 -------------------------aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 327 -------------------------AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred -------------------------HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 0011111111222333333332211 1222344555666666677777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCC
Q 002834 679 FSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEAD 758 (875)
Q Consensus 679 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 758 (875)
++....- +..|...-..+..|.+..|.+.+|.++|-++.. ..++-+......|..+|.+.|+.+-|.+++-++..+.+
T Consensus 382 lnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e 459 (557)
T KOG3785|consen 382 LNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSE 459 (557)
T ss_pred HHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchh
Confidence 7777664 333333333466788888888888888876643 22333333344566888888888888888887754444
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCC
Q 002834 759 C-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVER 837 (875)
Q Consensus 759 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~ 837 (875)
. .....+.+-|.+.+.+--|-+++..+-.++|.. ..| .|+-.....++..+......+.|+...-|
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rE--- 526 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPISQMRE--- 526 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchhHHHH---
Confidence 4 334455577888888888888888888888743 222 24444445566666554444444422222
Q ss_pred EEeEEecCCCCCCChHHHHH
Q 002834 838 KNNAFMAGDYSHPRRDMIYW 857 (875)
Q Consensus 838 ~~~~f~~~~~~~~~~~~~~~ 857 (875)
.+| ...++.|.+.+-..+
T Consensus 527 Vvh--llr~~~nsq~E~mik 544 (557)
T KOG3785|consen 527 VVH--LLRMKPNSQCEFMIK 544 (557)
T ss_pred HHH--HHHhCCCchHHHHHH
Confidence 223 334455555544333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=112.72 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=162.5
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566778888899999999999987654 346678888999999999999999999998853 34456677778889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGR 779 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 779 (875)
...|++++|.+.++++.+..........+..++.++...|++++|.+.+++.. ..| +...+..+...+...|+++.|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997632222234577788999999999999999998874 344 4577888888899999999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 780 VVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 780 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999898888899999999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-07 Score=92.14 Aligned_cols=423 Identities=12% Similarity=0.119 Sum_probs=234.6
Q ss_pred hhhhHHHHHHHccCCchHHHHhhccC----C-CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 002834 79 AVSKALLNLYAKCGVIDDCYKLFGQV----D-NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVL 153 (875)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 153 (875)
.++-..+....++|++...+..|+.. | ......|...|.-..+.+ -++-++++|.+..+ .++..-.--|
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk-----~~P~~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLK-----VAPEAREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHh-----cCHHHHHHHH
Confidence 34444455555666666666666553 1 123445766666666666 77788888887744 3344466667
Q ss_pred HHhhccCCcchhhhHHHHHHHhC------CCCCcchhhHHHHHhHhcCChh---HHHHHhccCCC--CC--eeeHHHHHH
Q 002834 154 SACARLGGIFAGKSLHAYVIKFG------LERHTLVGNSLTSMYAKRGLVH---DAYSVFDSIED--KD--VVSWNAVIS 220 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li~ 220 (875)
..++..+++++|.+.+...+... .+.+...|..+.+..++.-+.- ...+++..+.. +| -..|+.|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77777788888877777665332 2444556666666666543322 23334444443 23 246899999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHH-HhHhc
Q 002834 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVS-FYLRF 299 (875)
Q Consensus 221 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~ 299 (875)
-|.+.|.++.|..+|++..+. ..+...|..+..+++...+ ...+..+. .-...
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE------------------------~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE------------------------SCVAAKMELADEES 310 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH------------------------HHHHHHHhhhhhcc
Confidence 999999999999999998765 3345556666655543320 00011111 00011
Q ss_pred ------CChhHHHHHhhhcCCC---------------CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHH
Q 002834 300 ------GRTEEAELLFRRMKSR---------------DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVS 358 (875)
Q Consensus 300 ------g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ 358 (875)
-+++-...-|+.+..+ ++..|..-+. +..|+..+-+..|.+..+. +.|-...
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~--- 383 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAV--- 383 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCC---
Confidence 1233333334433321 2222322222 2345555666666665554 3343221
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-------hHHHHHHHHh
Q 002834 359 LLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLI-------SWNSMLDAFS 431 (875)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~ 431 (875)
..+.. .+..+...|-..|+++.|..+|++...-+-. .|......-.
T Consensus 384 --------------------------Gs~~~-Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 384 --------------------------GSPGT-LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred --------------------------CChhh-HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 11222 7788888888899999999999887554322 4544555555
Q ss_pred ccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHH
Q 002834 432 ESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKY 511 (875)
Q Consensus 432 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 511 (875)
++.+++.|+.++++...- |.... +. +...+.+-+ .++ ..+..++...++..-..|-++.
T Consensus 437 rh~~~~~Al~lm~~A~~v---P~~~~----~~-~yd~~~pvQ-~rl------------hrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHV---PTNPE----LE-YYDNSEPVQ-ARL------------HRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred hhhhHHHHHHHHHhhhcC---CCchh----hh-hhcCCCcHH-HHH------------HHhHHHHHHHHHHHHHhccHHH
Confidence 677788888877665432 33221 11 111111000 011 2233445666666677788888
Q ss_pred HHHHHHhhccCCCcccHHHHHH---HhhcCCChHHHHHHHHhhhcCCCcc-----HHHHHHHHHH---cCCchHHHHHHH
Q 002834 512 AFNVFQSLLEKRNLVTFNPVIS---GYANCGSADEAFMTFSRIYARDLTP-----WNLMIRVYAE---NDFPNQALSLFL 580 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~---~~~~~~A~~~~~ 580 (875)
...+++.+..- -+.|-..+++ -+-.+.-++++.+++++-...-..| |++.+.-+.+ ...++.|..+|+
T Consensus 496 tk~vYdriidL-riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDL-RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88888888763 1222222221 2234455778888887765554444 6665555443 235677888888
Q ss_pred HHHHCCCCCC
Q 002834 581 KLQAQGMKPD 590 (875)
Q Consensus 581 ~m~~~g~~p~ 590 (875)
+..+ |.+|.
T Consensus 575 qaL~-~Cpp~ 583 (835)
T KOG2047|consen 575 QALD-GCPPE 583 (835)
T ss_pred HHHh-cCCHH
Confidence 8776 55554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-09 Score=104.01 Aligned_cols=271 Identities=12% Similarity=0.043 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHhhccCCC--cccHHHHHHHhhcCCChHHHHHHHHhhhcC--CCcc--HHHHHHHHHHcCCchHHHHHH
Q 002834 506 CRNIKYAFNVFQSLLEKRN--LVTFNPVISGYANCGSADEAFMTFSRIYAR--DLTP--WNLMIRVYAENDFPNQALSLF 579 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~A~~~~ 579 (875)
.|++..|+++..+..+..+ ...|..-+.+--+.|+.+.+-..+.++.+. |... +-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777776555322 233444444555556666666666666444 2222 555555566666666666666
Q ss_pred HHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC-----
Q 002834 580 LKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK----- 654 (875)
Q Consensus 580 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 654 (875)
.++.+.+ +..+.+.......|.+.|++.+...++.++.+.
T Consensus 177 ~~ll~~~-----------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 177 DQLLEMT-----------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHhC-----------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 6655543 333334444444455555555555554444431
Q ss_pred ------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 655 ------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 655 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
...+|+.++.-....+..+.-...|++.-.+ .+-+...-.+++.-+...|+.++|.++.++..+ .+..|+
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~-- 297 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR-- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh--
Confidence 1235666666665555555555566655443 444555556667777888888888888888776 455555
Q ss_pred HHHHHHHHhhcCCChHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 729 QYASLVDLLARGGQISDAY----SLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...++. ..+-++.+.=+ +.++..+. ++..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.
T Consensus 298 -L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~ 372 (400)
T COG3071 298 -LCRLIP-RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALD 372 (400)
T ss_pred -HHHHHh-hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHH
Confidence 222222 23334433333 33344333 3477888888899999999999999988888884 556788899999
Q ss_pred hcCCchhHHHHHHHHH
Q 002834 805 ADARWDGVVEIRKLMK 820 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~ 820 (875)
+.|+.++|.++++.-.
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 9999999988766543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-07 Score=97.13 Aligned_cols=421 Identities=13% Similarity=0.056 Sum_probs=245.4
Q ss_pred CCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHH
Q 002834 384 YLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460 (875)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 460 (875)
+..+.. +|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+..+-..
T Consensus 319 ~qnd~a-i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAA-IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 333444 888888999999999999999988754 3456789999999999999999999888665443455444333
Q ss_pred H-HHHhh-ccCchhhHHHHHHHHHHh-cCCCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhhccC-C-C
Q 002834 461 I-IHFCT-TVLREGMVKETHGYLIKT-GLLLGDTEHNIGNAILDAYAKC-----------RNIKYAFNVFQSLLEK-R-N 524 (875)
Q Consensus 461 l-l~~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~-p-~ 524 (875)
+ -+.|. +.+..+++..+...++.. +...+...+..+-.+.-+|... ....++.+.+++..+. | |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 33343 456666776666666552 1111122333444444444321 1123455555555443 2 3
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCC----CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHH
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARD----LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLP 599 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 599 (875)
+...--+.--|...++.+.|.....+....+ +..|..|.-++...+++.+|+.+.+..... .|+.. -...=+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence 3333333344556677777777777665442 222777777777777777777777665432 11111 1111111
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC-hhhHHHHHHHHHHcCChH
Q 002834 600 VCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD-VVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~ 673 (875)
.-...++.+++......+...--....+ ...++-....+....+.- .+ +.++..+..-.+. +.+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~ 625 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLK 625 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhh
Confidence 1122344444333322221110000000 001111122222222211 11 1222222221111 111
Q ss_pred HHHHHHHHHHHCCCCCCh--------hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChH
Q 002834 674 AALKVFSDMLELGVNPDH--------VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQIS 744 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~--------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 744 (875)
.+..-.. +...-..|.. ..|......+.+.+..++|...+.++.. +.|-. ..|...+..+...|.++
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhH
Confidence 1100000 1111122221 2344455578888999999998888855 55654 47777788999999999
Q ss_pred HHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 745 DAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRV--VANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 745 ~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
||.+.|.... ..|+. ....++...+...|+...|+. ....+++++|.++..|..||.++.+.|+.++|.+.+....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9998887774 77865 677788888888999888888 9999999999999999999999999999999999887765
Q ss_pred h
Q 002834 821 T 821 (875)
Q Consensus 821 ~ 821 (875)
.
T Consensus 782 q 782 (799)
T KOG4162|consen 782 Q 782 (799)
T ss_pred h
Confidence 4
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=99.02 Aligned_cols=123 Identities=13% Similarity=0.021 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHH
Q 002834 330 NDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAY 409 (875)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 409 (875)
.|+|.+|.++..+-.+.+ -. ....|.....+....|+.+.+-..+..+.+....+... +.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~-e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHH
Confidence 466667766666655554 11 12334444555556666666666666665553333333 6667777777788888877
Q ss_pred HHHHhc---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh
Q 002834 410 RTFLMI---CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS 455 (875)
Q Consensus 410 ~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 455 (875)
.-.+++ ...++.........|.+.|++.....++..|.+.|.--|+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 766654 4457777888888999999999999999999888765443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-09 Score=98.57 Aligned_cols=306 Identities=11% Similarity=0.128 Sum_probs=158.3
Q ss_pred hcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHH
Q 002834 505 KCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQA 575 (875)
Q Consensus 505 ~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A 575 (875)
-..+.++|.++|-+|.+. | ...+--+|.+.|.+.|..+.|+++-+.+.+....| ...|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 346678888888888775 2 22344567777778888888888887775554444 44566677777888888
Q ss_pred HHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC
Q 002834 576 LSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD 655 (875)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 655 (875)
..+|..+.+.|. --......|+..|-...++++|.++-..+.+.+..+..+ .+..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHH----------------------
Confidence 888877766431 112345556666666666666666666665555441111 0011
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL-SACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYAS 732 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 732 (875)
-|.-+...+....+.+.|..++.+..+. .|+.+--+.++ +.....|+++.|.+.++.+.+ -.|+ ......
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---Qn~~yl~evl~~ 254 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE---QNPEYLSEVLEM 254 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH---hChHHHHHHHHH
Confidence 1223333333444555555555555442 23322222222 244455555555555555544 1222 234444
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH--HhcCCc
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY--AADARW 809 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 809 (875)
|..+|...|+.++...++.++. ..++...-..+........-.+.|.....+-+.-.|.--+.|-.+..-. +..|++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 5555555555555555544442 3333333333333222222233344444444444444333332222111 223567
Q ss_pred hhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEE
Q 002834 810 DGVVEIRKLMKTRDLKKPAACSWIEVERKNNAF 842 (875)
Q Consensus 810 ~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f 842 (875)
.+.+.+.+.|....++..|.+.--.-+=+.|.|
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 778888888877667776765544444344433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=97.11 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVD 735 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 735 (875)
+...|.-+|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+++.+ +.|+. ...+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3556778899999999999999999985 555 45777788899999999999999999977 67764 48888999
Q ss_pred HhhcCCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 736 LLARGGQISDAYSLVNRMPVEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
-+|..|++++|...|++....|. +.+|.++..+..+.|+++.|+..++++++++|+++.....++..+...|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999865553 47888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002834 812 VVEIRKLMKTRDL 824 (875)
Q Consensus 812 A~~~~~~~~~~~~ 824 (875)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-06 Score=88.33 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=140.0
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~ 236 (875)
+.+..+....+.+++ +.+-...+....--.+...|+.++|......-.+ .+.++|..+--.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 444445555555544 2333333443333445556777777777665544 355678777666667788999999998
Q ss_pred HHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--
Q 002834 237 WMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS-- 314 (875)
Q Consensus 237 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 314 (875)
..... .|| |..++.-|.-.-++.|+++.....-....+
T Consensus 100 nAl~~--~~d--------------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 100 NALKI--EKD--------------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHhc--CCC--------------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 88754 555 555555555555555666655555444433
Q ss_pred -CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHH
Q 002834 315 -RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGN 393 (875)
Q Consensus 315 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (875)
.....|.....++.-.|++..|..+++...+.....|+...|.....- -
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~------------------------------L 189 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL------------------------------L 189 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH------------------------------H
Confidence 345678888888888999999999999887764234666655432211 1
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCC--Ccc-hHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 002834 394 ALVSFYAKCSDMEAAYRTFLMICRR--DLI-SWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFC 465 (875)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 465 (875)
--.....+.|..+.|.+.+...... |-. .-.+-...+.+.++.++|..++..++.. .||..-|...+..|
T Consensus 190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1122234455566666665554332 111 2233455667778888888888888775 46766665554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-11 Score=82.40 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-07 Score=91.00 Aligned_cols=443 Identities=12% Similarity=0.097 Sum_probs=228.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHH--HHHHH--h
Q 002834 325 AGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNA--LVSFY--A 400 (875)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--li~~~--~ 400 (875)
+-+.+.|++++|.....++...+ +-|...+..-+-++.+.+.++.|..+... .+... +++. +=.+| .
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~----~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALL----VINSFFFEKAYCEY 90 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhh----hcchhhHHHHHHHH
Confidence 34445566666666666655542 12223344444455555555555533221 11100 1111 23333 3
Q ss_pred cCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCchhhHHHHHH
Q 002834 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT-ILTIIHFCTTVLREGMVKETHG 479 (875)
Q Consensus 401 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~ 479 (875)
+.+..++|...++.....+..+...-...+.+.|++++|+.+|+.+.+++..--..- -..++.+-.. ..+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----H
Confidence 678888888888865555655666667778888999999999998877653221111 1111111000 000 0
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--
Q 002834 480 YLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLT-- 557 (875)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 557 (875)
.+...... +..+...+......+...|++.+|+++++....-. . +.+...+..
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~------------~------------e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRIC------------R------------EKLEDEDTNEE 217 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------H------------Hhhcccccchh
Confidence 11111110 01111122222333444555555555555441100 0 000000000
Q ss_pred -------c-HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch----HhcHHHHhhcccchH-------------HHHH
Q 002834 558 -------P-WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT----IMSLLPVCSQMASVH-------------LLRQ 612 (875)
Q Consensus 558 -------~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~a~~~~~~~~-------------~a~~ 612 (875)
+ -..|..++...|+.++|.+++....+.. .+|... -+.++..-....-.+ .+..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 0 2345555667777777777777776653 233311 122222111111111 0111
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCC
Q 002834 613 CHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD-VVMLTAMIGGYA--MHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p 689 (875)
....+...........+.++.+|. +..+.+.++....+... ...+.+++.... +......|.+++...-+. .|
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 111111111113334455555553 55667777777766522 223333433322 223577888888887764 34
Q ss_pred Ch--hhHHHHHHHHhhcCcHHHHHHHHH--------HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC------
Q 002834 690 DH--VVITAVLSACSHAGLVDEGLEIFR--------SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM------ 753 (875)
Q Consensus 690 ~~--~~~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 753 (875)
.. +.....+......|+++.|++++. ...+ .+..| .+...++..+.+.+..+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 43 344445556788999999999998 4444 34444 45556777787777655555555444
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 754 --PVEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 754 --~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
...+.. .+|.-+...-.++|+.+.|...++++++.+|++......+.-.|+.. +.+.|+.+-+.
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 122222 34445555556789999999999999999999999888887777664 56666665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-09 Score=116.95 Aligned_cols=211 Identities=13% Similarity=0.022 Sum_probs=159.7
Q ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 002834 605 ASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSD 681 (875)
Q Consensus 605 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 681 (875)
++.+.|...++.+.+..+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4467777777777777777777888888889999999999999998665 3 456888899999999999999999999
Q ss_pred HHHCCCCCChh-hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC
Q 002834 682 MLELGVNPDHV-VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD 758 (875)
Q Consensus 682 m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 758 (875)
..+. .|+.. .+..++..+...|++++|...++++.+. ..|+ ...+..+..+|...|++++|.+.++++. ..|+
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9984 55543 3333445567789999999999988662 2454 3467788899999999999999998874 5555
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 759 C-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 759 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
. ..++.+...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 44555555556666 4788878887776544444444588899999999999888 666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-11 Score=81.80 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=48.0
Q ss_pred CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 002834 315 RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAY 365 (875)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 365 (875)
||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 789999999999999999999999999999999 99999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-09 Score=116.72 Aligned_cols=177 Identities=13% Similarity=0.044 Sum_probs=142.0
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4568899999998765 46678888989999999999999999999985 555 45677777799999999999999
Q ss_pred HHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC--CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 714 FRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP--VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++++.+ +.|+.. .+..++..+...|++++|...+++.. ..|+. ..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999977 566643 33344556777899999999998874 34544 456667777778999999999999999898
Q ss_pred CCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 790 ADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 790 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888999999888 477776665554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=106.47 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=143.8
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC----------CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ----------KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLE-----LGV-NPDH 691 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~ 691 (875)
+.+...|...+++.+|..+|+++.. |. ..+++.|...|.+.|++++|...+++..+ .|. .|..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 3566778888888888888876543 11 24677788888999998888877776553 122 2233
Q ss_pred h-hHHHHHHHHhhcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------C
Q 002834 692 V-VITAVLSACSHAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------V 755 (875)
Q Consensus 692 ~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~ 755 (875)
. .++.+...|...+++++|..+++...+.+. ..++ ..+++.|...|...|+++||.++++++. .
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2 356666689999999999999998876544 2232 3489999999999999999999998873 2
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc----cCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 756 EAD-CNVWGTLLGACRIHHEVELGRVVANRLFEM----EADNIG---NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 756 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+. ...++.+..+|...++.+.|.+.|.....+ .|+.|. +|..|+-+|.++|++++|.++...+.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 366788889998899999898888877654 465554 57789999999999999999866553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-07 Score=94.03 Aligned_cols=306 Identities=12% Similarity=0.033 Sum_probs=180.2
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK---RNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
+.+.++..++.+ +.|+.+.-.+.--|+..++++.|.+...+...- -+...|..+.-.+.-.+++.+|+.+.+.
T Consensus 463 slqale~av~~d----~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 463 SLQALEEAVQFD----PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHhcC----CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444444433 344444444555666777788888777766553 2667788777777778888888888877
Q ss_pred hhcCCCccHHH---HHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-Cch
Q 002834 551 IYARDLTPWNL---MIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVR 626 (875)
Q Consensus 551 ~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~ 626 (875)
....-...|.. -+..-..-++.++++.....+..- --+...+...+. .|....-..-...... .+. .+.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s 611 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAIS 611 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-cccccch
Confidence 65443333222 122223456666666665554321 000000000000 0000000000000000 111 111
Q ss_pred HHHHHHHHh---HhcCCHHHHHHHhccCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 002834 627 LNGALLHLY---AKCGSIFSASKIFQCHPQKD------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV 697 (875)
Q Consensus 627 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 697 (875)
.+..+.... .+.-..+..+..+...+.|+ ...|......+.+.++.++|...+.+.... .+-....|...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~ 690 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLR 690 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHh
Confidence 221111111 11111111222222222233 235666777888889999998888877763 23334455555
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYS--LVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
...+...|.+++|.+.|..... +.|+.. ...+++.++.+.|+..-|.. ++..+. .+| ++..|..+.....+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 5677889999999999988855 888754 88999999999997766666 777774 666 569999999999999
Q ss_pred CChhHHHHHHHHHhcccCCCCc
Q 002834 773 HEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
|+.+.|...|.-++++++.+|.
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999998875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-09 Score=105.08 Aligned_cols=186 Identities=16% Similarity=0.066 Sum_probs=107.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACS 702 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~ 702 (875)
.+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+..|++..+ +.|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345555566667777777777765543 3456777777777777777777777777776 3444 345555666667
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..|++++|.+.|++..+ ..|+..........+...++.++|.+.+++.. ..|+ .|.. .......|+...+ .
T Consensus 144 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-H
Confidence 77777777777777755 44543322222223345566777777775432 2222 2221 1112223444332 1
Q ss_pred HHHHHh-------cccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 781 VANRLF-------EMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 781 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.+. ++.|+.+.+|..+|.+|...|++++|+..+++..+
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222 44555566777777777777777777777666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-07 Score=89.50 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTA-MIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSH 703 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~ 703 (875)
-.+..+++..|.+.+|+++|-.+..| |-.+|.+ |.++|.+++.++.|..++-++ +-+.+..+..-+|. -|.+
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK 473 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH
Confidence 34556677777888888888777653 3455554 456777777887776555443 22334444444443 6777
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQY 730 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~ 730 (875)
.+.+=-|-+.|+.+.. ..|+++.|
T Consensus 474 ~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHc---cCCCcccc
Confidence 7777777777766644 66666655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=99.94 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=143.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcC--CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccc
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYAR--DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS 606 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~ 606 (875)
+.+..+|.+.|-+.+|++.|+...+. -+.+|..|.++|.+..+++.|+.++.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------------
Confidence 44566666666666666666665443 3333666666666666666666666655442 4444443
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG 686 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 686 (875)
...+...+-..++.++|+++|+...+..
T Consensus 293 ----------------------------------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 293 ----------------------------------------------------LLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred ----------------------------------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 1223334444455556666666555531
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCC--HHH
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEAD--CNV 761 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~ 761 (875)
+.+.....++...|.-.++.|.|+.+++++.+ .|+ .+++.|..++-+|.-++++|-++.-|++.. ..|+ .++
T Consensus 321 -~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 321 -PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred -CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 22333444444455555666666666666655 233 234555555555555666666665555542 2343 377
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
|-++......-||+..|.+.++-++--+|++...++.|+-+-.+.|+.++|..+++..++..
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88888888888999999999999999999999999999999999999999999998887644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-08 Score=98.77 Aligned_cols=194 Identities=18% Similarity=0.142 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...|...|++++|...+++..+. .|+ +...+..+...|...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~---------------------------------~~~~~~~la~~~~~~ 78 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH--DPD---------------------------------DYLAYLALALYYQQL 78 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc---------------------------------cHHHHHHHHHHHHHc
Confidence 666667777777777777777766543 232 333444556667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
|++++|.+.+++..+ .+...+..+...+...|++++|++.+++..+....| ....+..+..++...|++++|.+.+
T Consensus 79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 345567777888888888888888888887643222 2345566667888889999999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
++..+ ..|+ ...+..++..+...|++++|...+++.. . +.++..+..+...+...|+.+.|....+.+.+..|
T Consensus 159 ~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 159 TRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 88876 3343 4577788888889999999998888763 2 33456666667777788899999888887766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-06 Score=84.19 Aligned_cols=257 Identities=9% Similarity=-0.054 Sum_probs=166.9
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
|+.....+...+...|+.++|+..|++....|+.+ .....-.+.+.|+.++.-.+...+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------------- 295 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------------- 295 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh---------------
Confidence 55555666666666666666666666655544444 222222334555555555555444322
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
.-.+..-|---........+++.|+.+-++..+ .++..|-.-...+...|+.++|.-
T Consensus 296 --------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 296 --------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred --------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 101000000111222345567777777766554 334444444567788899999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH-HHhhc-CCChHHHHHHHHhCC
Q 002834 678 VFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV-DLLAR-GGQISDAYSLVNRMP 754 (875)
Q Consensus 678 ~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~ 754 (875)
.|+..+. +.| +-..|..|+.+|...|++.+|.-.-+...+. +..+..++..++ ..+.- ----++|.+++++..
T Consensus 356 aFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 356 AFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9998877 454 5678999999999999999998877766552 333444555553 33332 223478999998874
Q ss_pred -CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 755 -VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 755 -~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+|+- .....+...|...|..+.++..+++.+...|+. ..+..||.++...+.+.+|.+.+....
T Consensus 432 ~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 432 KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77865 566777788889999999999999999988854 568899999999999999999766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-09 Score=97.65 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=155.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHhhcC
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT-AVLSACSHAG 705 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g 705 (875)
+.+..+|.+.|.+.+|.+.|+...+ |-+.+|-.|-++|.+-.++..|+.++.+-.+. .|-.+||. ...+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888889999999988887654 77788888999999999999999999999884 66666654 4555788899
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
+.++|.++++...+. .+.+++...|+...|--.++.+-|+.++.++. -.-++..++++.-+|.-.+.++.+...++
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998772 23346688888888889999999999998874 34566788999999999999999999999
Q ss_pred HHhcccC--C-CCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 784 RLFEMEA--D-NIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 784 ~~~~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+++.... + -+..|..|+.+....|++.-|.+.++....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9988754 2 355789999999999999999998776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.4e-07 Score=90.56 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhH--HHHHhH--h
Q 002834 118 GFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS--LTSMYA--K 193 (875)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 193 (875)
-+..++ ++++|+..-.++...+ +.+...+..=+-+....+.++.|..+.+ +.+ -..+++. +=.+|| +
T Consensus 21 ~~~~~~-e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 21 RHGKNG-EYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred Hhccch-HHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence 344566 7777777777776654 4455556666666667777777664432 111 1112222 245555 5
Q ss_pred cCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 002834 194 RGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPI 243 (875)
Q Consensus 194 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 243 (875)
.+..|+|+..++.....+..+...-...+-+.|++++|+.+|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 68899999999866555555555556778899999999999999987654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.3e-08 Score=98.04 Aligned_cols=197 Identities=9% Similarity=0.000 Sum_probs=130.8
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHH
Q 002834 600 VCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAAL 676 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 676 (875)
.+...|+.+.|...+..+.+..+.++..++.+...|...|++++|...|++..+ | +..+|..+..++...|++++|+
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344444555555555555554455666778888889999999999999988765 3 4578888999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh--HHHHHHHHhC-
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI--SDAYSLVNRM- 753 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~- 753 (875)
+.|++..+. .|+..........+...++.++|.+.|++... ...|+...+ .++..+ .|+. +++.+.+.+.
T Consensus 153 ~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 153 DDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcC
Confidence 999999884 56543222222234456789999999977654 234433322 333333 4444 3334333322
Q ss_pred C----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC-CCCccHHHHHHHH
Q 002834 754 P----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA-DNIGNYVVMSNLY 803 (875)
Q Consensus 754 ~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~ 803 (875)
. ..| ....|..+...+...|+.+.|+..++++++++| +.+.....+..+.
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 1 122 236799999999999999999999999999997 4455544454443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-06 Score=93.03 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=139.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
..+...|...|++++|++++++..+. .|+. ..|..-.+.+-+.|++..|.+..+.+......|..+.+-.+..+.++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 44555566667777777777666654 4443 23444445566667777777777766666666777777778888888
Q ss_pred CCHHHHHHHhccCCCCCh----------hhHH--HHHHHHHHcCChHHHHHHHHHHHHC--CC---CCChh---------
Q 002834 639 GSIFSASKIFQCHPQKDV----------VMLT--AMIGGYAMHGMGKAALKVFSDMLEL--GV---NPDHV--------- 692 (875)
Q Consensus 639 g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~~--------- 692 (875)
|++++|.+++.....++. ..|- ....+|.+.|++..|+.-|....+. .+ +-|-+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~ 355 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTL 355 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccH
Confidence 888888888777665431 1332 3456778888888887776655432 11 22222
Q ss_pred -hHHHHHHHHhhcC-------cHHHHHHHHHHhHHHhCCCC-----------ChhHHHHHHHHh---hcCCChHHHHHHH
Q 002834 693 -VITAVLSACSHAG-------LVDEGLEIFRSIEKVQGIKP-----------TPEQYASLVDLL---ARGGQISDAYSLV 750 (875)
Q Consensus 693 -~~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~ 750 (875)
+|..+++..-+.. -...|.+++-++........ +..-...+..-. .+...-+++...-
T Consensus 356 r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~ 435 (517)
T PF12569_consen 356 RAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAA 435 (517)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2333333221111 11234444444422100000 000000010000 0111111111111
Q ss_pred H-----------hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 751 N-----------RM----PVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 751 ~-----------~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
. +. +.+.|.+....-+ .....=++.|.+.++.+.+..|++..+|..--.+|.+.|++--|++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqa 513 (517)
T PF12569_consen 436 KKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQA 513 (517)
T ss_pred hhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHH
Confidence 0 00 1122222222221 12334578899999999999999999999999999999999999886
Q ss_pred HHH
Q 002834 816 RKL 818 (875)
Q Consensus 816 ~~~ 818 (875)
+++
T Consensus 514 L~k 516 (517)
T PF12569_consen 514 LKK 516 (517)
T ss_pred HHh
Confidence 553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-05 Score=86.28 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCCC-chhhhHHHHHHHccCCchHHHHhhccCCC---CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhc
Q 002834 64 ALHGYVTKLGHISC-QAVSKALLNLYAKCGVIDDCYKLFGQVDN---TDPVTWNILLSGFACSHVDDARVMNLFYNMHVR 139 (875)
Q Consensus 64 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~ 139 (875)
.++..+....+.++ ...|..|...|+...++..|.+.|+..-+ .+...+......|++.. +++.|..+.-..-+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhh
Confidence 33333444444444 34677777777777777777777776544 34455667777777777 787777763333222
Q ss_pred CCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeH-HHH
Q 002834 140 DQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSW-NAV 218 (875)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 218 (875)
.....-...|..+--.+-..++...+..-|+...+.. +-|...|..|..+|.++|.+..|.++|++...-++.++ ...
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 2000111122222223445556666666666555544 34555777888888888888888888876654333322 211
Q ss_pred --HHHHHcCCCcchHHHHHHHHHh
Q 002834 219 --ISGLSENKVLGDAFRLFSWMLT 240 (875)
Q Consensus 219 --i~~~~~~g~~~~a~~l~~~m~~ 240 (875)
....+-.|.+.+|+..+.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1223556777777777776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-06 Score=91.51 Aligned_cols=552 Identities=13% Similarity=0.045 Sum_probs=299.1
Q ss_pred chhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhc
Q 002834 182 LVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICA 258 (875)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~ 258 (875)
..|..|-..|+..-+...|.+.|+..-+ .|..++......|++..+++.|..+.-...+. .|- . .
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a-~-------~-- 560 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APA-F-------A-- 560 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chH-H-------H--
Confidence 3788888889888888899999988765 35567788889999999999999883332221 110 0 0
Q ss_pred cCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHH
Q 002834 259 SLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLK 335 (875)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 335 (875)
-..-|.-..-.|.+.++...|..-|+.... .|..+|..+..+|...|++..
T Consensus 561 --------------------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 561 --------------------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred --------------------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceeh
Confidence 011111133345677888888888877654 467788888999999999999
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHH--HhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC-------CChh
Q 002834 336 ALNLFCELITKEMIWPDSVTLVSLLPA--CAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC-------SDME 406 (875)
Q Consensus 336 a~~~~~~m~~~~~~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~ 406 (875)
|+++|.+... +.|+.. |.....+ -+..|.+.++...++.+....-.... ..+.+...+.+. |-..
T Consensus 615 AlKvF~kAs~---LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 615 ALKVFTKASL---LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred HHHhhhhhHh---cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999988766 346543 3222222 23456666666555554432110000 112222222111 1111
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 407 AAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 407 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
.|...|+ ++++.|.-.......-+...|..+-.+|. +|.+.. +
T Consensus 689 kavd~~e------------------------ksie~f~~~l~h~~~~~~~~Wi~asdac~----------~f~q~e---~ 731 (1238)
T KOG1127|consen 689 KAVDFFE------------------------KSIESFIVSLIHSLQSDRLQWIVASDACY----------IFSQEE---P 731 (1238)
T ss_pred hhhHHHH------------------------HHHHHHHHHHHHhhhhhHHHHHHHhHHHH----------HHHHhc---c
Confidence 1222221 11222211111111112222222111111 111100 0
Q ss_pred CCCCCchhHHHHHHHHHHhcCCH---H---HHHHHHHhhccC-CCcccHHHHHHHhhc--------CCChHHHHHHHHhh
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNI---K---YAFNVFQSLLEK-RNLVTFNPVISGYAN--------CGSADEAFMTFSRI 551 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~-p~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~ 551 (875)
+.|+......+..-.-+.+.. + -+.+.+-.-.+. -+..+|..++..|.+ ..+...|+..+.+.
T Consensus 732 --~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 732 --SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred --cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 011111111111111111111 0 001111100000 134455555444332 12334677777776
Q ss_pred hcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 552 YARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 552 ~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
.+..... |+.|.-. ...|++.-|.--|-+-... -+-...+|..+--.|....+++.+...+.......|.+..-+
T Consensus 810 V~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 810 VSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 5543333 6666555 5556665555555443322 122345666666677788888888888888888777766666
Q ss_pred HHHHHHhHhcCCHHHHHHHhccC-----CC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCCh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCH-----PQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL---------GVNPDH 691 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 691 (875)
-.........|+.-++..+|.-- .. ++..-|-.-......+|+.++-+...++.... |.+-+.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 55555566678888888887641 11 45555554444556677766655544443221 234445
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH----HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA----SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLG 767 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 767 (875)
..|.......-+.+....|.+...+.......+-+...|+ .....++..|.++.|..-....+..-+..+-.+-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 6677777777788888888887777654333334444444 345666778888888777666655555555554444
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
. .-.|+++.+...+++++.+-.++... .-.+++.....+.-+.|....-+.
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 4 45688999999999999886555442 233455556677777787754333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-06 Score=86.43 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+..+-+.|++.+|+..+.++. ..| |+..|.+...++.+.|++..|..-.+..++++|+.+..|..-+-++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 333444444554444444442 223 334444444444444555555544555555555444444444444444455555
Q ss_pred HHHHHHH
Q 002834 812 VVEIRKL 818 (875)
Q Consensus 812 A~~~~~~ 818 (875)
|.+.+..
T Consensus 445 Aleay~e 451 (539)
T KOG0548|consen 445 ALEAYQE 451 (539)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-08 Score=101.61 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-----C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHH
Q 002834 493 HNIGNAILDAYAKCRNIKYAFNVFQSLLEK-----R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVY 566 (875)
Q Consensus 493 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 566 (875)
..+...+...|...|+++.|..+++..... . +......+ .+.+...|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~---------------------------l~~~a~~y 251 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM---------------------------LNILALVY 251 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH---------------------------HHHHHHHH
Confidence 344555777777778888777777765442 0 00000000 22455666
Q ss_pred HHcCCchHHHHHHHHHHHC---CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHH
Q 002834 567 AENDFPNQALSLFLKLQAQ---GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFS 643 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 643 (875)
...+++++|..+|+++..- ..-++... -..+++.|..+|.+.|++++
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~------------------------------va~~l~nLa~ly~~~GKf~E 301 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGEDHPA------------------------------VAATLNNLAVLYYKQGKFAE 301 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCCHH------------------------------HHHHHHHHHHHHhccCChHH
Confidence 7888888888888876542 11122111 11233445556666666666
Q ss_pred HHHHhccCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCh----hhHHHHHHHHhhcC
Q 002834 644 ASKIFQCHPQ----------KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLEL---GVNPDH----VVITAVLSACSHAG 705 (875)
Q Consensus 644 A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~a~~~~g 705 (875)
|...+++..+ +++. .++.++..+...+++++|..+++...+. -+.++. .++..+...|.+.|
T Consensus 302 A~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 302 AEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 6655554332 2332 4566777888899999999988876542 133333 46888899999999
Q ss_pred cHHHHHHHHHHhHHHh----C-CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--------CCCCH-HHHHHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQ----G-IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--------VEADC-NVWGTLLGACR 770 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~ 770 (875)
++++|.++++++.... + ..+. ...++.|...|.+.+++++|.+++.+.. ..|+. .++.+|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9999999999987643 1 1232 3478899999999999998888887752 44554 77999999999
Q ss_pred hcCChhHHHHHHHHHhc
Q 002834 771 IHHEVELGRVVANRLFE 787 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~ 787 (875)
..|+++.|+++.++++.
T Consensus 462 ~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HcccHHHHHHHHHHHHH
Confidence 99999999999998874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=84.26 Aligned_cols=191 Identities=12% Similarity=0.031 Sum_probs=116.1
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
|...|+...|+.-++.+++..+.+...+..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|..|++++|..
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence 33334444444444444444444555556666667777777777777765543 344566666666777777777777
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 678 VFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
.|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+. .....+.+.....|++-.|..+++...
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 7777766432222 34666666666777777777777777765 44543 366667777777777777777777664
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 755 -VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 755 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
..++...+.-.+..-...||.+.+.+.-.++..+.|..+.
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 3344444444445555667777777777777777776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-05 Score=83.84 Aligned_cols=482 Identities=12% Similarity=0.062 Sum_probs=225.2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC-----------CCc-cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS-----------RDL-VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD 352 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd 352 (875)
+..+|..|.+++.+..++|-|.-.+..|.. .|. ..-......-.+.|..++|..+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 445566666666666666666655555542 011 11111111223456666666666665442
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC--------------
Q 002834 353 SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR-------------- 418 (875)
Q Consensus 353 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 418 (875)
..+-+.|...|.+++|.++-+.--+... . .+|-....-+-..++.+.|++.|++...+
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r--~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL--R--NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh--h--hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 2333444555666666555432111111 0 13333444444455666666666554221
Q ss_pred ---------CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCC
Q 002834 419 ---------DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLG 489 (875)
Q Consensus 419 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 489 (875)
|...|.-...-+-..|+.+.|+.+|....+ |-++++..+-.|+.++|.++-++
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--------- 963 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--------- 963 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---------
Confidence 223333333444456677777777666543 34555555667777777776655
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---------C--CcccHHH-------------------------HHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK---------R--NLVTFNP-------------------------VIS 533 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------p--~~~~~~~-------------------------l~~ 533 (875)
..+......+.+.|-..|++.+|..+|.+...- . +...||. .+.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 445555667777788888888888777664321 0 0111111 111
Q ss_pred HhhcCCChHHHHHHHHhh------------hcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHH
Q 002834 534 GYANCGSADEAFMTFSRI------------YARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLP 599 (875)
Q Consensus 534 ~~~~~~~~~~A~~~~~~~------------~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 599 (875)
.|-+.|.+.+|+++--+- ..++..| .+.-...++.+.++++|..++-...+ |...++
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq 1114 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ 1114 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 122333333332221000 1111111 44444555555666666555544322 122222
Q ss_pred HhhcccchHHHHHHHHHHHHh---cCC---CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChH
Q 002834 600 VCSQMASVHLLRQCHGYVIRA---CFD---GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 673 (875)
.|...+ +..-.++-+.+... .++ ...+...+.+.+.++|.+..|-+-|.+.-.+ -..+.++.+.|+.+
T Consensus 1115 lC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1115 LCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcc
Confidence 222221 11111111111111 111 2345566777777778777777776654321 12344555555544
Q ss_pred HHHH---------H----HHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC
Q 002834 674 AALK---------V----FSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG 740 (875)
Q Consensus 674 ~A~~---------~----~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 740 (875)
+..- + -+-+.....+-|+.+...++.-|.+..-+|---.+|..... + .++.|..+-.+ .
T Consensus 1189 KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq---i--Eiee~q~ydKa---~ 1260 (1416)
T KOG3617|consen 1189 KIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ---I--EIEELQTYDKA---M 1260 (1416)
T ss_pred eEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH---h--hHHHHhhhhHH---h
Confidence 3210 0 01112222344455555555444444444443333433322 1 12222222111 3
Q ss_pred CChHHHHHHHHhCCCCCCH-HHHH----------HHHHHHHhcC-ChhHHHHHHHHHhcccCCCC------ccHHHHHHH
Q 002834 741 GQISDAYSLVNRMPVEADC-NVWG----------TLLGACRIHH-EVELGRVVANRLFEMEADNI------GNYVVMSNL 802 (875)
Q Consensus 741 g~~~~A~~~~~~~~~~p~~-~~~~----------~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~ 802 (875)
|-+++|.+.+.++..+.+. ..++ ..+...+..+ |....+.-.+.+++ +|..+ ..|-.|..-
T Consensus 1261 gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1261 GALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHH
Confidence 4455666665555422222 2222 2233332222 44444444444444 45443 246678888
Q ss_pred HHhcCCchhHHHHHHHHHhC
Q 002834 803 YAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~~~~~~ 822 (875)
|....+|..|-+.++.|+.+
T Consensus 1340 ~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhc
Confidence 99999999999999988753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-05 Score=83.89 Aligned_cols=413 Identities=10% Similarity=0.033 Sum_probs=203.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHH
Q 002834 366 LKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNL 442 (875)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 442 (875)
.+++..+....+.+++.- +....+.....-.+...|+.++|......-.. ++.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 344444444454444421 11111333333345556777777777766544 3556788888888888889999999
Q ss_pred HHHHHHCCCCCChh-hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 443 LNCMLMEGIRPDSI-TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 443 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
|+..+.. .||.. .+.-+--.-++.++.+..........+.. +.....+..+..++.-.|++..|..++++..+
T Consensus 98 y~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888764 34433 33222222234455554444444444332 33334455666666667777777777766554
Q ss_pred C----CCcccHHHHH------HHhhcCCChHHHHHHHHhhhcCC---CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 002834 522 K----RNLVTFNPVI------SGYANCGSADEAFMTFSRIYARD---LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMK 588 (875)
Q Consensus 522 ~----p~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 588 (875)
. |+...+.-.. ....+.|..++|.+.+..-.+.- ...-.+-...+.+.+++++|..++..+... .
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 2 3333322211 22344555566655555443321 111334455566666666666666666654 4
Q ss_pred CCcchHhcHHHHhh-c-ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHH
Q 002834 589 PDAVTIMSLLPVCS-Q-MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGY 666 (875)
Q Consensus 589 p~~~~~~~ll~a~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 666 (875)
||.+-|...+..|. . .+.......++......-+.... |-....+.+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~---------------------------p~Rlplsvl---- 298 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC---------------------------PRRLPLSVL---- 298 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc---------------------------chhccHHHh----
Confidence 55555544433222 1 11111111222222211111000 000001000
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH----HHHHHHHhHHHhC----------CCCChh--HH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE----GLEIFRSIEKVQG----------IKPTPE--QY 730 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~--~~ 730 (875)
-...-.+..-+++..+.+.|+++-...+.++.. .-...+- +..+...+.. .| -+|+.. ++
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhccc-ccCCCcccccccCCchHHHHHH
Confidence 001112233344555666665554333333322 1111111 1111111111 00 123322 45
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
..++..+-+.|+++.|..+++... ..|.. ..|..-...+.-.|+++.|-..++.+.++|-.|-...-.-+.-..++.+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 566667777777777777777664 44443 3333334555556777777777777777776666655566666677777
Q ss_pred chhHHHHHHHHHhCC
Q 002834 809 WDGVVEIRKLMKTRD 823 (875)
Q Consensus 809 ~~~A~~~~~~~~~~~ 823 (875)
.++|.++.......|
T Consensus 455 i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREG 469 (700)
T ss_pred cHHHHHHHHHhhhcc
Confidence 777777766665444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-05 Score=84.20 Aligned_cols=248 Identities=13% Similarity=0.154 Sum_probs=123.6
Q ss_pred HHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCC-------CCCcchHHHHHHHhhcc
Q 002834 87 LYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQP-------KPNSVTVAIVLSACARL 159 (875)
Q Consensus 87 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~~ll~~~~~~ 159 (875)
.|.--|++|.|.+-.+.+. .-..|..|-+.+.+.. +.+-|.-.+..|....+. +-+..+-.-+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 3444555555555444332 2234555555555554 444444444444322110 11112222233334566
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCC-eeeHHHHHHHHHcCCCcchHHHHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKD-VVSWNAVISGLSENKVLGDAFRLFSWM 238 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m 238 (875)
|.+++|..++.+-.+.+ .|=..|...|.+++|.++-+.-.+-. ..||..-..-+-..++.+.|++.|++-
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 78888888887765543 45567788899999988876533211 224555555556678888888888764
Q ss_pred HhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCcc
Q 002834 239 LTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLV 318 (875)
Q Consensus 239 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 318 (875)
.. |-...+ .+|. .. . .++-.++.+. .|...|.--....-..|++|.|+.++....
T Consensus 885 ~~----hafev~-rmL~---e~-----p---~~~e~Yv~~~----~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 885 GV----HAFEVF-RMLK---EY-----P---KQIEQYVRRK----RDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred CC----hHHHHH-HHHH---hC-----h---HHHHHHHHhc----cchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 21 100000 0000 00 0 0011111110 144444444444455677777777666543
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGY 378 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 378 (875)
-|-++++..|-.|+.++|-.+-++ . -|......+.+.|-..|++.+|..+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e---s----gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE---S----GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh---c----ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 244555555566666666555443 2 2444444455555555555555555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-06 Score=88.48 Aligned_cols=448 Identities=14% Similarity=0.059 Sum_probs=246.1
Q ss_pred HhHhcCChhHHHHHhhhcC---CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChh
Q 002834 295 FYLRFGRTEEAELLFRRMK---SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD-SVTLVSLLPACAYLKNLK 370 (875)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~ 370 (875)
+.+..|+++.|+..|.... .+|.+.|+.-..+|++.|++++|++=-.+-++. .|+ ..-|.-.-.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHH
Confidence 4466788888888887654 357778888888888888888888776666654 355 345666666777778888
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhH-HHHHHHhcCCCCcchHHHHH-----HHHhccCChhHHHHHHH
Q 002834 371 VGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEA-AYRTFLMICRRDLISWNSML-----DAFSESGYNSQFLNLLN 444 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~ 444 (875)
+|..-|..-++. .+++...++.|.+++ ..+. +.+.|. ++..|..+. ..+...-.+..-++.+
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~- 155 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEII- 155 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHh-
Confidence 888777766655 344444666666665 1111 111111 111111111 1111111111100000
Q ss_pred HHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh--------cCCCCCCchhHHHHHHHHHHhcCC-HHHHHHH
Q 002834 445 CMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT--------GLLLGDTEHNIGNAILDAYAKCRN-IKYAFNV 515 (875)
Q Consensus 445 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 515 (875)
. ..|+..- .+. ......+.+..+... +....++...-........-..++ .++..
T Consensus 156 ---~--~~p~~l~------~~l---~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 156 ---Q--KNPTSLK------LYL---NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred ---h--cCcHhhh------ccc---ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH--
Confidence 0 0111100 000 001111111111100 000000000000000000000000 00000
Q ss_pred HHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 516 FQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 516 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
.+--..-...+.++..+..+++.|++-+......+... ++....+|...|...++...-....+.|-.. ..-
T Consensus 220 -----~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad 293 (539)
T KOG0548|consen 220 -----VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RAD 293 (539)
T ss_pred -----HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHH
Confidence 00011223456666777778888888887776655222 6777777888888777776666655444211 111
Q ss_pred HhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChH
Q 002834 594 IMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 594 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 673 (875)
|+.+-.++ ..+...|.+.++++.|...|.+...+... -....+....+
T Consensus 294 ~klIak~~---------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~E 341 (539)
T KOG0548|consen 294 YKLIAKAL---------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAE 341 (539)
T ss_pred HHHHHHHH---------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHH
Confidence 11111111 11345777788889998888875531111 11122333455
Q ss_pred HHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
+++...+...- +.|.... ...-...+.+.|++..|...|.++.. ..|+ ...|+...-+|.+.|.+.+|++-.+
T Consensus 342 k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 342 KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56555555444 3444321 22235678899999999999999987 3354 5699999999999999999998877
Q ss_pred hCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 752 RMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 752 ~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
... ..|+. ..|..-+.++...++++.|.++|+++++.+|++......+...+..+...+...++.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 764 55543 666666677777899999999999999999999998888888877754444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-08 Score=97.67 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=159.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 680 (875)
.|++..|.-.++..++..+.+...|.-|.......++-..|+..+.+..+ .|..+.-.|.-.|...|.-.+|+..++
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34455555555555666666666777777777777777777777776655 355677777788888888888999888
Q ss_pred HHHHCCCC-----C---ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHh
Q 002834 681 DMLELGVN-----P---DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 681 ~m~~~g~~-----p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
..+...++ + +..+-.. ..+..........++|-++....+.++|+....+|+-+|.-.|.++.|.+.|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 88764211 0 1000000 122333345556667777766567668888999999999999999999999999
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLM 819 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 819 (875)
+. .+| |...|+-|...+....+.+.|+.+|.+++++.|.......-||-.|...|-|.||.+. +.++
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 85 677 5688999999888888999999999999999999999999999999999999999995 4444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-06 Score=89.55 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=186.0
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCC--Cc-chHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICRR--DL-ISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLRE 471 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 471 (875)
....+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|-..+..|.....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~- 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL- 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc-
Confidence 345567789999999998775442 33 345567778888999999999999998874 666666444443321100
Q ss_pred hhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccHHHHHHHhhcCCChH-HHHHHHH
Q 002834 472 GMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTFNPVISGYANCGSAD-EAFMTFS 549 (875)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~-~A~~~~~ 549 (875)
+ ......+...++++++..+ |...+...+.-.+.....+. .+...+.
T Consensus 87 -------------~------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 87 -------------Q------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred -------------c------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHH
Confidence 0 0111234444455544433 32222222222222211222 2333444
Q ss_pred hhhcCCCcc-HHHHHHHHHHcCCchHHHHHHHHHHHC----C----------CCCCc--chHhcHHHHhhcccchHHHHH
Q 002834 550 RIYARDLTP-WNLMIRVYAENDFPNQALSLFLKLQAQ----G----------MKPDA--VTIMSLLPVCSQMASVHLLRQ 612 (875)
Q Consensus 550 ~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~----g----------~~p~~--~~~~~ll~a~~~~~~~~~a~~ 612 (875)
.+...++.+ |+.+-..|.......-..+++...... + -.|+. .++..+-+.+...|+.+.|.+
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455556555 555555555444444444455444322 1 12332 244556677888999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 613 CHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
+.+.++.+.+..+..+..-...|-+.|++.+|.+.++....- |...=+-.+..+.+.|+.++|.+++......+..|
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999998888999999999999999999999999987763 44555567788889999999999999888766544
Q ss_pred Chh------hH--HHHHHHHhhcCcHHHHHHHHHHhHHHh
Q 002834 690 DHV------VI--TAVLSACSHAGLVDEGLEIFRSIEKVQ 721 (875)
Q Consensus 690 ~~~------~~--~~ll~a~~~~g~~~~a~~~~~~~~~~~ 721 (875)
-.. .| .-...+|.+.|++..|++.|..+.+.+
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 321 11 334558888999999998888776643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-05 Score=76.87 Aligned_cols=289 Identities=14% Similarity=0.084 Sum_probs=169.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHH---HHhhcCCChHHHHHHHHhhhcCCCccHHH---HHHHHHHcCCc
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVI---SGYANCGSADEAFMTFSRIYARDLTPWNL---MIRVYAENDFP 572 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 572 (875)
+-..+...|.+..|+.-|.....- |+..|-++. ..|...|+...|+.-+.++.+..+..+.. -...+.+.|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 444555566677777777666655 444444433 35666677777777676665555444332 23456777777
Q ss_pred hHHHHHHHHHHHCCCCCCcc----------------hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 573 NQALSLFLKLQAQGMKPDAV----------------TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~----------------~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
++|..=|+...+.. |+.. .....+..+...|+...+......+....+-+..++..-..+|.
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 77777777766542 2211 12222333444566666666666666666666666667777777
Q ss_pred hcCCHHHHHHHhccC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-------------HHH
Q 002834 637 KCGSIFSASKIFQCH---PQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV-------------LSA 700 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------------l~a 700 (875)
..|++..|+.-+... ...+..+..-+-..+...|+.+.++...++.++ +.||....... ...
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777776555433 334555555556666677777777777777666 46664321111 112
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 773 (875)
....++|.++++..+...+ ..|. ...+..+..++...|++-+|++...+.. ..|| ..++.--..+|...-
T Consensus 279 ~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 2334556666655555544 3333 1234445566666777777777776664 4554 566666666676667
Q ss_pred ChhHHHHHHHHHhcccCCCCcc
Q 002834 774 EVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.++.|+.-|+++.+.+|+|-.+
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHH
Confidence 7777777777777777766443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-06 Score=86.95 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=103.0
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPDH--VVITAVLSACS 702 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~a~~ 702 (875)
..+...+...|++++|...+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666777777666665543 2344566666667777777777777776665321 1221 12334555666
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHH-H--HHHHHhhcCCChHHHHHH--H-HhC-CCCCC---HHHHHHHHHHHHhc
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQY-A--SLVDLLARGGQISDAYSL--V-NRM-PVEAD---CNVWGTLLGACRIH 772 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~ 772 (875)
..|++++|..+++++.......+..... . .+...+...|..+.+.++ + ... +..|. .........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 7777777777777664311111111111 1 222333334432222222 1 111 11011 11112344445566
Q ss_pred CChhHHHHHHHHHhcccC---------CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 773 HEVELGRVVANRLFEMEA---------DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|+.+.|....+.+....- .........+.++...|++++|.+.+.....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777766644321 1345567889999999999999997666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-07 Score=86.97 Aligned_cols=59 Identities=7% Similarity=-0.104 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.+...+...|+.+.|+..++++++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345567788999999999999999988764 68899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-07 Score=90.20 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=110.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCc
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----AGL 706 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~ 706 (875)
...+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++.. .+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 335667789999999888876 4566667788889999999999999999987 344443 3334443332 236
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEV-ELGRVVAN 783 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~ 783 (875)
+.+|..+|+++.+ ...+++...+.++.++...|++++|.+++++.. ..| ++.++.+++-++...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8889999999866 345677788888888889999999998888763 344 456677776666666766 66778888
Q ss_pred HHhcccCCCC
Q 002834 784 RLFEMEADNI 793 (875)
Q Consensus 784 ~~~~~~p~~~ 793 (875)
++....|++|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-07 Score=80.44 Aligned_cols=121 Identities=13% Similarity=0.053 Sum_probs=89.3
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..++.++.+.|++++|...+++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666655 45554 44456677788888888888888766 5554 4577788888888888888888888874
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 755 VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 755 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..| ++..|..+..++...|+.+.|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 55777777777888888888888888888888888888877766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=81.33 Aligned_cols=145 Identities=11% Similarity=0.198 Sum_probs=113.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGG 741 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 741 (875)
+..|...|+++.+....+.+.. |. ..+...++.+++...+++..+ ..| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4567888888886554433221 11 122236677888888887766 344 4668999999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGAC-RIHHE--VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
++++|...+++.. ..| +...+..+..+. ...|+ .+.|.+.++++++.+|+++.++..+|..+...|++++|+..+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999884 556 567888888764 56676 599999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 002834 817 KLMKTR 822 (875)
Q Consensus 817 ~~~~~~ 822 (875)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-05 Score=74.64 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=214.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHH---HHHHHcCCchHHHHHHHHHHHCCCCCCcchHh-cHHHHhhc
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMI---RVYAENDFPNQALSLFLKLQAQGMKPDAVTIM-SLLPVCSQ 603 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~ 603 (875)
.-.+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.=+.+..+ ++||-..-. .--....+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 344566778889999999999999999999976654 578999999999999988876 478743221 11124567
Q ss_pred ccchHHHHHHHHHHHHhcCC-C--chHH------------HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFD-G--VRLN------------GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGG 665 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~-~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 665 (875)
.|.++.|..=|..+.+..+. . ...+ ...+..+.-.|+...|+.....+.+ .|...|..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 89999999999999988775 1 1121 2233345557888888888887765 577888888999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HH---HHH--------
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QY---ASL-------- 733 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~---~~l-------- 733 (875)
|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.++...+++.+ +.||.. +| -.+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999998888877642 33445555666688899999999998888865 788743 22 221
Q ss_pred -HHHhhcCCChHHHHHHHHhC-CCCCCH--HHHH---HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 734 -VDLLARGGQISDAYSLVNRM-PVEADC--NVWG---TLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 734 -~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
+....+.++|.++.+-.++. ...|.. ..++ .+-.+++..+++.+|++....+++.+|+|..++..-+.+|...
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 22345677888877776665 356652 2222 2334445678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 002834 807 ARWDGVVEIRKLMKTR 822 (875)
Q Consensus 807 g~~~~A~~~~~~~~~~ 822 (875)
..|++|+.-+++..+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999987776653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-05 Score=72.74 Aligned_cols=372 Identities=12% Similarity=0.045 Sum_probs=202.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC--CCcchHHH-HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR--RDLISWNS-MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
..+.|..+|-...++..|-..++++.. |...-|.. -..++.+.+.+.+|+.+...|.+. |+...-.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~-------- 114 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRV-------- 114 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHH--------
Confidence 445555666666666666666666543 22222221 234455666677777777666442 1100000
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
...-.......+++..+..+.++.+...+..+.+...-...+.|+++.|.+-
T Consensus 115 ----------------------------lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 115 ----------------------------LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ----------------------------HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 0000111234577777777777777543444444444445678888888888
Q ss_pred HHhhhcCC-Ccc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch----HhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 548 FSRIYARD-LTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT----IMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 548 ~~~~~~~~-~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
|+...+-+ ..| |+.-+ +..+.++++.|++...++.+.|++-.+.. -+..+.+ ..+..-..++...
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sa-- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSA-- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHHH--
Confidence 88876543 333 55444 44677899999999999999887643221 0011110 0000001111111
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
-...+|.-...+.+.|+.+.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-+.-+...+. -...||
T Consensus 240 ----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 240 ----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred ----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 122334444567788999999999999885 4677766554322 23456666666666666533 345788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhc-CCChHHHHHHHHhCCCCCCHHHHHHHH-HHH-H
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLAR-GGQISDAYSLVNRMPVEADCNVWGTLL-GAC-R 770 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~-~ 770 (875)
..++-.||+..-++.|-.++-+-.. ...+- +...| .+++++.. .-..++|.+=++.+....- .-...+. ..- .
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~-~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLT-EKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8999999999888888887743311 01110 11222 23444433 4456666655544320000 0011111 111 1
Q ss_pred hcCC----hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 771 IHHE----VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 771 ~~~~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
++.+ +..+++-+++.+++. -....+.+|+|....++.-+.+++..-.
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 2222 223445556666552 1245678899999999999999887643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-07 Score=79.63 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=91.5
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 712 EIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
.++++..+ +.|+. +..++..+...|++++|...++... ..| +...|..+..++...|+++.|+..++++++++
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 55653 5667889999999999999999875 555 66889999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 790 ADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 790 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
|+++..+..+|.+|...|++++|++.+......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988876653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=5e-08 Score=60.62 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=29.0
Q ss_pred hCCCCCcchhhHHHHHhHhcCChhHHHHHhccCC
Q 002834 175 FGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIE 208 (875)
Q Consensus 175 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (875)
+|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888884
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-07 Score=76.17 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=85.3
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
.+....+...+...|++++|..+++-.- ..| +...|-.|...|+..|+++.|+.+|.+++.++|++|.++..+|.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566677888899999999999999874 566 56889999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|+.++|.+.++....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999998887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0012 Score=67.76 Aligned_cols=452 Identities=10% Similarity=0.023 Sum_probs=252.4
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|+..|+.||.-+-.. ..+++++.++++.. | ....|..-|.+-....+++.+..+|.+.+..- . +...|..-|.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L--nlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L--NLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h--hHhHHHHHHH
Confidence 899999999988777 99999999999886 3 45678899999999999999999999988764 3 3444444443
Q ss_pred HHhc-cCChhh----HHHHHHH-HHhcCCCCchhhHHHHHHHHHh---------cCCChhHHHHHHHhcCC-C--C----
Q 002834 362 ACAY-LKNLKV----GKEIHGY-FLRHPYLEEDAAVGNALVSFYA---------KCSDMEAAYRTFLMICR-R--D---- 419 (875)
Q Consensus 362 ~~~~-~~~~~~----a~~~~~~-~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~-~--~---- 419 (875)
--.+ .++... ..+.++. +.+.|+++....+|+..+..+- ...+++..++++.++.. | |
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 122222 2233333 3456766666667777766543 33456667788877744 2 2
Q ss_pred ---cchHHHHHHHH-------hccCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHhhccCchhh--HHHHHHHHHHh-
Q 002834 420 ---LISWNSMLDAF-------SESGYNSQFLNLLNCMLM--EGIRPDSITILTIIHFCTTVLREGM--VKETHGYLIKT- 484 (875)
Q Consensus 420 ---~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~- 484 (875)
-..|..=|... -+...+..|.+++++... .|+.....++ -..+-.++ ..+++...++.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v-------p~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV-------PPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC-------CCCCChHHHHHHHHHHHHHHHH
Confidence 12222222211 123345667777777653 3433332220 00111111 11222222221
Q ss_pred ---cCCCCCCch------hHHHHHHHHH-HhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcC
Q 002834 485 ---GLLLGDTEH------NIGNAILDAY-AKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYAR 554 (875)
Q Consensus 485 ---~~~~~~~~~------~~~~~li~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 554 (875)
++.....+. .+|...+..+ ..-.-+-++...+.+... ++......-......+++.++++.....
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~-----l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD-----LLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH-----HHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 110000000 0111111110 000111112222222111 0000000000001123333333333221
Q ss_pred ----CCccHHHHHHHHH---HcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--Cc
Q 002834 555 ----DLTPWNLMIRVYA---ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GV 625 (875)
Q Consensus 555 ----~~~~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~ 625 (875)
+...|..+...-- ..+..+.....+.++...-..--..+|...+....+..-+..|+.+|..+.+.+.. .+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 1111222222111 11124555566666554322222356777777777777888888888888887665 77
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSA 700 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a 700 (875)
.+.++++..|| .++.+.|.++|+-..+ +|.. --+..+.-+...++-..|..+|++....++.|+. ..|..+|.-
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 88888888776 5788899999997665 4444 3455677777888999999999999988777764 579999998
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG--IKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
-+.-|+...++++-+++...+. ..|...+-..+++.|.-.+.+..-..-++.+
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 8899999999999888876555 4555556666777777666655444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-06 Score=82.18 Aligned_cols=196 Identities=9% Similarity=-0.001 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcC-CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCCh--HHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCG-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMG--KAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~ 680 (875)
.+.|....+.++...+.+..+++.....+.+.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 344444555555555554455555555555556 56788888776654 4556777666666666653 67888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC---CCh----HHHHHHHHh
Q 002834 681 DMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG---GQI----SDAYSLVNR 752 (875)
Q Consensus 681 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~~~~ 752 (875)
++.+.. +-|...|....-++.+.|+++++++.++++.+ ..|+ ...|+....++.+. |.. ++++++..+
T Consensus 133 kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 133 KILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 888743 33566777777788888999999999999877 3343 44666666555444 222 467777755
Q ss_pred C-CCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 753 M-PVEA-DCNVWGTLLGACRIH----HEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 753 ~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
+ ...| |..+|+.+.+.+... ++...|...+.+++..+|+.+.++..|+.+|...
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 5 4566 568999999998774 3446688889999999999999999999999874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.5e-05 Score=80.06 Aligned_cols=190 Identities=12% Similarity=0.000 Sum_probs=118.7
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh--hhHHHHHHHHHHcCC
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV--VMLTAMIGGYAMHGM 671 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~ 671 (875)
..+...|+++.|...++...+..+.+...+..+...|...|++++|...+++... ++. ..|..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 4556677777777777777777766777778888899999999999999887664 122 245678888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhH-H--HHHHHHhhcCcHHHHHHHHHHhHHHh-CCCCC---hhHHHHHHHHhhcCCCh
Q 002834 672 GKAALKVFSDMLELGVNPD-HVVI-T--AVLSACSHAGLVDEGLEIFRSIEKVQ-GIKPT---PEQYASLVDLLARGGQI 743 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~-~~~~-~--~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~ 743 (875)
+++|+.++++.......+. .... + .++.-+...|..+.+.++ +.+.... ...|. .......+.++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 9999999999865322112 1111 1 223333344443333332 2121110 01011 11223566778889999
Q ss_pred HHHHHHHHhCC--CCC---CH----HHH--HHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 744 SDAYSLVNRMP--VEA---DC----NVW--GTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 744 ~~A~~~~~~~~--~~p---~~----~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++|..+++.+. ... .. .+. .....++...||.+.|.+.+..++.+-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998873 111 11 111 222244567899999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-06 Score=92.53 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~ 766 (875)
+...+..|.....+.|..++|..+++.+.+ +.|+.. ....++.++.+.+++++|...+++.. ..|+. .....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344444444444455555555555554433 444433 44444445555555555555554442 33433 2233333
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
.++...|+.++|..+|+++++.+|+++..++.+|.++...|+.++|...+++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334445555555555555554454455555555555555555555554333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-06 Score=84.14 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=159.8
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHH
Q 002834 502 AYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQAL 576 (875)
Q Consensus 502 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 576 (875)
-+.+.|++.+|.-.|+...++ | +...|.-|.......++-..|+..+.+..+.++.. ...|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456889999999999977765 6 77899999999999999999999999998888777 666777889999999999
Q ss_pred HHHHHHHHCCCC-----C---CcchHhcHHHHhhcccchHHHHHHHHHHHHh-cCC-CchHHHHHHHHhHhcCCHHHHHH
Q 002834 577 SLFLKLQAQGMK-----P---DAVTIMSLLPVCSQMASVHLLRQCHGYVIRA-CFD-GVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 577 ~~~~~m~~~g~~-----p---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
..|+.=.....+ + +...-.. ....+...+....++|-.+... +.. ++.+...|.-+|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 998886443210 0 1000000 1222333344555555544444 444 88899999999999999999999
Q ss_pred HhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 647 IFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 647 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.|+.... .|...||-|...++...+.++|++.|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-++..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9997765 4667899999999988899999999999888 678754 334456678889999998888876654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-06 Score=82.99 Aligned_cols=157 Identities=15% Similarity=0.069 Sum_probs=96.4
Q ss_pred hhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 002834 289 CNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN 368 (875)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 368 (875)
.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~-l~q---------- 168 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSI-LTQ---------- 168 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHH-HHH----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHH-HHH----------
Confidence 333445567788899888888765 455666677888899999999999999988754 4433 222
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHH
Q 002834 369 LKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 445 (875)
...+.+..+.-.+.+.+|..+|+++.. +++.+.|.+..++...|++++|.+++.+
T Consensus 169 ----------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 169 ----------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp ----------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 233444444444567777777777643 3455666677777777888888777777
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCch-hhHHHHHHHHHHh
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVLRE-GMVKETHGYLIKT 484 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 484 (875)
....+ +-+..++..++.++...|+. +.+.+++.++...
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 65433 12334555555555555555 4455555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-05 Score=73.11 Aligned_cols=283 Identities=13% Similarity=0.083 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HH-HHHHHHHHcC
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WN-LMIRVYAEND 570 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~l~~~~~~~~ 570 (875)
+.+.+..+.+..++.+|++++..-.++ | +....+.+..+|....++..|...++++...-+.- |. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 456666677888999999998876664 4 55667778888888889999999998886655544 32 2345567788
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhcc
Q 002834 571 FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQC 650 (875)
Q Consensus 571 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (875)
.+.+|+++...|.+. |+...-..-+. .| .....+++..+..+.++
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLq---------aA-----------------------IkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQ---------AA-----------------------IKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHH---------HH-----------------------HhcccccCcchHHHHHh
Confidence 888999888887643 22111100010 00 11224455555555555
Q ss_pred CCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC---
Q 002834 651 HPQ-KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL-GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP--- 725 (875)
Q Consensus 651 ~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--- 725 (875)
.+. .+..+.+.......+.|+++.|++-|+...+- |+.| ...|+..+ +..+.|+.+.|+++..++.+ .|++.
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPE 214 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPE 214 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCc
Confidence 552 44444444444445666666666666665553 3333 33444322 33445566666666666554 23221
Q ss_pred ----------C--------hhHHHHH-------HHHhhcCCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChh
Q 002834 726 ----------T--------PEQYASL-------VDLLARGGQISDAYSLVNRMP----VEADCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 726 ----------~--------~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~ 776 (875)
| .-+-+.+ .-.+.+.|+++.|.+.+..|| .+.|+++..++.-. -..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 1 1122233 334567788888888888886 34567776665432 2345566
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.+.+-+.=+++++|-.+.++..+--+|.++.-++-|..++.
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 66666677788888666777777777888887887777664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=90.35 Aligned_cols=208 Identities=16% Similarity=0.111 Sum_probs=166.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 614 HGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
|....+..|.+...|-..+......+++++|++++++... .-.-.|.++++.....|.-+...++|+++.+.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 4555666666777888888888889999999999987664 12247888888888888888889999999883
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC---HHH
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD---CNV 761 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~ 761 (875)
--.-..|..|...|.+.++.++|.++++.|.+.++ .....|...++.+.++..-++|..+++++. .-|. ...
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 22345578888899999999999999999998776 556788889999999999999999988763 4443 244
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
..-.+..-.++||.++++.+++-++.-.|+--..|..++..-.+.|..+.+..++++....++.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 4555566678999999999999999999999999999999999999999999999888776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00038 Score=84.06 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
+.+...+...|++++|...+.+...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455667777777777766543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-05 Score=77.16 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLV 734 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 734 (875)
..+......+...|+.++|+..++.++.. .||...|..+.. .+...++.++|.+.++++.. ..|+. ...-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444444555677777888888777763 566555555544 67777788888887777765 56663 3556667
Q ss_pred HHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhH
Q 002834 735 DLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGV 812 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 812 (875)
++|.+.|+..+|+..++... .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 77777888888777777764 333667777777888777777666443 34567778888888
Q ss_pred HHHHHHHHhC
Q 002834 813 VEIRKLMKTR 822 (875)
Q Consensus 813 ~~~~~~~~~~ 822 (875)
+...+..+++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 8877777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-05 Score=74.28 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=116.1
Q ss_pred HHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHH
Q 002834 632 LHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGL 711 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 711 (875)
+..|.+.|+++......+....+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766544443322111 01223566788888888888752 556677888888999999999999
Q ss_pred HHHHHhHHHhCCCCC-hhHHHHHHHHh-hcCCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 712 EIFRSIEKVQGIKPT-PEQYASLVDLL-ARGGQ--ISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
..|++..+ +.|+ ...+..++.++ .+.|+ .++|.+++++.. ..| +..++..+...+...|+++.|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999977 5665 55888888865 67777 599999999985 566 5578888888899999999999999999
Q ss_pred hcccCCCCccHH
Q 002834 786 FEMEADNIGNYV 797 (875)
Q Consensus 786 ~~~~p~~~~~~~ 797 (875)
++++|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999998876543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-07 Score=56.00 Aligned_cols=32 Identities=34% Similarity=0.669 Sum_probs=18.5
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHh
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 717 (875)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=72.43 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG 741 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 741 (875)
+-..+...|+-+....+..+.... .+-|.......+....+.|++.+|...|++... .-++|...|+.++-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555555444443321 122222233344455555555555555555544 22333445555555555555
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
++++|..-|.+.. +.| ++.+.+++...+...||.+.|+..+.++....|.++.+-..|+-+...+|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555555554442 333 3345555555555555555555555555555555555555555555555555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-05 Score=81.52 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=126.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh---
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH--- 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~--- 703 (875)
....+...+.++|-...|..+|+++. .|...|.+|+..|+..+|.++..+-.+ -+||..-|..+......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 33445555555555555555555432 345555555555555555555555544 24444444444433333
Q ss_pred -------------------------cCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC
Q 002834 704 -------------------------AGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VE 756 (875)
Q Consensus 704 -------------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 756 (875)
.++++++.+.|+.-.+ +.|- ..+|..++.+..+.++++.|.+.|.... ..
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 4556666666655433 3333 3477777888888899999888887764 77
Q ss_pred CCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 757 ADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 757 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
||. ..|+++..++.+.|+-.+|...++++++-+-++...+....-+-..-|.|++|.+....+.+.
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 865 889999999999999999999999999998888888888888888899999999988887653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.1e-06 Score=73.48 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=75.4
Q ss_pred CCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
..|+. .....++..+...|++++|.+.++... ..| ++..|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 44543 356667777777888888888777763 334 557777777777788888888888888888888888888888
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.+|...|++++|.+.++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888776554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-05 Score=76.51 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=104.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 773 (875)
........|+.++|+..++.+.. ..|+.. .+...++.+.+.|+.++|.+.++++. ..|+ ...+.++..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 33456678999999999999876 456544 66677899999999999999999985 6776 578889999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+..+|++.++..+..+|+||..|..|+..|...|+..+|...+...-
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999766553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-05 Score=82.13 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=171.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HHHHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WNLMIRVYA 567 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~ 567 (875)
+|-...-..+...+...|-..+|..+|+++. .|.-++.+|+..|+..+|..+..+..+.++.+ |..+.+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLH 468 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhcc
Confidence 5555566778889999999999999998754 56778889999999999998888776655554 888888888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHH
Q 002834 568 ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKI 647 (875)
Q Consensus 568 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 647 (875)
...-+++|.++.+..... .-..+-....+.++++++...++...+.++-...+|-.+..++.++++.+.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 778888999888875432 0011111122356777787777777777777777788888888888888888888
Q ss_pred hccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 648 FQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 648 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
|..... | +..+||++-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.++++.......
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 886553 4 45688888888888888888888888888876 4445556666666778888888888888887654333
Q ss_pred CChhHHHHHHHHh
Q 002834 725 PTPEQYASLVDLL 737 (875)
Q Consensus 725 p~~~~~~~l~~~~ 737 (875)
-|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 4555554444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.7e-05 Score=83.73 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--C-----CcccHHHHHHHhhcCCChHHHHHHHHhhhcC-CCcc-HH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK--R-----NLVTFNPVISGYANCGSADEAFMTFSRIYAR-DLTP-WN 560 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~ 560 (875)
|.+...+-..|......+++++|++++++.... + -...|.++++.-...|.-+...++|+++.+- ++.+ |.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445556777788888889999999999988763 1 2346777777777778888888999988765 3333 99
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHhc
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAKC 638 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 638 (875)
.|...|.+.+..++|.++|+.|.+. ..-....|...+....+...-+.+..++..+.+.-+. ...+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 3455667888888888888888999999988888776 788888888999999
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCcHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSACSHAGLVD 708 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~ 708 (875)
|+.+.++.+|+.... +....|+..|..-.++|+.+.+..+|++.+..++.|-. ..|.--|.---..|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998765 35678999999999999999999999999998887764 23444444333344433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.5e-05 Score=76.41 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=137.1
Q ss_pred HHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc--
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG-MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL-- 706 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-- 706 (875)
..+.+.++.++|+...+++.+ .+..+|+....++...| +.++++..++++.+.+ +-+..+|+.....+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 345567788899998887765 34467877777777777 6799999999999853 3334456655445555665
Q ss_pred HHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CC----hh
Q 002834 707 VDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HE----VE 776 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~----~~ 776 (875)
.++++.+++++.+ ..|. ...|.....++.+.|++++|++.++++. ..| |..+|+.....+... |. .+
T Consensus 124 ~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678889988876 5565 4488888899999999999999999985 444 668898887766554 22 24
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhc----CCchhHHHHHHHHH
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAAD----ARWDGVVEIRKLMK 820 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 820 (875)
.+....+++++++|+|..+|..++.+|... ++..+|.+......
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 677888899999999999999999999883 45566777655543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=71.43 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=111.1
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTL 765 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 765 (875)
.|+......+-.++...|+-+.+..+...... ...-|.......+....+.|++.+|...+.+.. .++|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335556688888999998888877644 223344456668899999999999999999984 56678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
..+|-+.|+++.|...|.+++++.|.++.++..|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999887776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-05 Score=76.04 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=111.5
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KD-V---VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV----V 693 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 693 (875)
.......++..+.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344445566667777777777777776554 22 1 35666777778888888888888888764 33322 3
Q ss_pred HHHHHHHHhhc--------CcHHHHHHHHHHhHHHhCCCCChh-H-----------------HHHHHHHhhcCCChHHHH
Q 002834 694 ITAVLSACSHA--------GLVDEGLEIFRSIEKVQGIKPTPE-Q-----------------YASLVDLLARGGQISDAY 747 (875)
Q Consensus 694 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~-----------------~~~l~~~~~~~g~~~~A~ 747 (875)
+..+..++... |+.++|.+.|+++.+. .|+.. . ...+...+.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 33344444443 6778888888887663 34321 1 124667788999999999
Q ss_pred HHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 748 SLVNRMP----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 748 ~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..+++.. ..| ....|..+..++...|+.+.|...++.+....|+
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9988873 233 3478889999999999999999998888766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00016 Score=81.49 Aligned_cols=147 Identities=8% Similarity=0.057 Sum_probs=75.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
++..++.+|-+.|+.++|..++++..+ .|+.+.|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 445555666666666666666665544 3445555566666555 666666666555432 334
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
.+++..+.++|.++.. ..|+ ...+..+.+.....-.. .--..++.-+-..|...++++.+..++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555544 2222 12222222221111001 111223333444455566677777777
Q ss_pred HHHhcccCCCCccHHHHHHHHH
Q 002834 783 NRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
+.+++.+|.|-.+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7777777776666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00074 Score=62.92 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=106.1
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----c
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----A 704 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~ 704 (875)
..-...|.+.|++++|++.......-+..+.| +..+.+..+.+-|...+++|.+ --+..|.+-|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccc
Confidence 34445677888888888888875433333333 3445667778888888888876 2345566656555543 4
Q ss_pred CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-ChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHH-EVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~-~~~~a~~~ 781 (875)
+++.+|.-+|++|.+ ...|+..+.+.+..++...|+++||..+++... ...++.+..+++-.....| +.+.-.+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 567788888888866 367777778888888888888888888887774 3335566666654444443 55666677
Q ss_pred HHHHhcccCCCCc
Q 002834 782 ANRLFEMEADNIG 794 (875)
Q Consensus 782 ~~~~~~~~p~~~~ 794 (875)
..++....|+.+-
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 7777777777653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.024 Score=62.46 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=86.7
Q ss_pred cHHHHHHHhhcCCChH---HHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 527 TFNPVISGYANCGSAD---EAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 527 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+-+.|+..|.+.++.. +|+-+++.....++.. --.+++.|+--|-+..|.++|+.+.-+.++-|...|..+ +-
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HH
Confidence 3456778888888765 4555556555444444 566888898889999999999999888888887666433 34
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhc---cCCC----CChhhHHHHHHHHHHcCChH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQ---CHPQ----KDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~----~~~~~~~~li~~~~~~g~~~ 673 (875)
+...|++..+...+....+.--.+..-..-+|..-.+.|.+++-.+... ++.. .-..+-+..++.++..++++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~ 596 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT 596 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 4455666666665555444322211111122222233444443333221 1111 01122334445555556666
Q ss_pred HHHHHHHHHH
Q 002834 674 AALKVFSDML 683 (875)
Q Consensus 674 ~A~~~~~~m~ 683 (875)
+-...+..|.
T Consensus 597 q~~~~~~~~~ 606 (932)
T KOG2053|consen 597 QLLKLLESMK 606 (932)
T ss_pred HHHHHHhccc
Confidence 6666655554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=80.09 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=94.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
..++..+...++++.|.++|+++.+ ..|+ ....++.++...++..+|.+++++.. ..| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4455556667778888888888766 2344 34456777777777788888877764 333 556677677778889
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
++.+.|..+++++.++.|++...|..|+.+|...|+|++|+-..+.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998887664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=81.57 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 732 (875)
++..+-.|.....+.|+.++|+.+++...+ +.||... +..+..++.+.+++++|+..+++..+ ..|+.. +...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777778888888888888888888887 5676544 55566688888888888888888765 566644 7777
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+..++.+.|++++|.++|++.. ..|+ +.+|.++..++.+.|+.+.|..+|+++++........
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8888888888888888888875 3443 5778888888888888888888888888876554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=61.14 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+|-.+++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ -.++.+-|.++|+.-.+.+|-.| ..-...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 356666766666667777888888888777666 444455555533 34577788888877666444433 33445566
Q ss_pred HhhcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccC--CCCc--cHHHHHHHHHhc
Q 002834 736 LLARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEA--DNIG--NYVVMSNLYAAD 806 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~--~~~~l~~~~~~~ 806 (875)
-+.+-++-..|..+|++.. ..|+ ..+|..++..-..-||+....++-++-....| ..+. .-.++..-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 6777777777777777763 2333 26788888777777888877777777666666 2211 122334445555
Q ss_pred CCchhHHHHHHH
Q 002834 807 ARWDGVVEIRKL 818 (875)
Q Consensus 807 g~~~~A~~~~~~ 818 (875)
+.+..-..-++.
T Consensus 524 d~~~c~~~elk~ 535 (656)
T KOG1914|consen 524 DLYPCSLDELKF 535 (656)
T ss_pred ccccccHHHHHh
Confidence 555444443333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-05 Score=77.49 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=107.8
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
+..+..+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-+...+..-...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 34455677778888899999999999999877777777889999999999999999999975 23345555555557889
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCC
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVE 756 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 756 (875)
.++.+.|+++.+++.+ ..|+.. +|..|+.+|...|++++|+..++.+|.-
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999977 677755 9999999999999999999999999843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00045 Score=63.77 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=113.3
Q ss_pred HhHhcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQ--KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEG 710 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 710 (875)
+...+|+.+.|...++.+.. |... .-..-.--+-..|++++|+++++...+.+ +.|.+++..=+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33445566666665555433 2111 11111123456789999999999998875 55667777666667777888888
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 002834 711 LEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH---EVELGRVVANRL 785 (875)
Q Consensus 711 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 785 (875)
++-+..-.+. +.-|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..|...+...| |.+.+.+.|.++
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888777763 56678889999999999999999999999985 555 5566667776666554 788899999999
Q ss_pred hcccCCCCccHH
Q 002834 786 FEMEADNIGNYV 797 (875)
Q Consensus 786 ~~~~p~~~~~~~ 797 (875)
+++.|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999986655444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-05 Score=66.04 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 678 VFSDMLELGVNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
++++... ..|+. .....+...+...|++++|.+.|+.+.. ..| +...+..++.++.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 35543 3455566678888999999999988866 334 45678888899999999999999888873
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 755 VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 755 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
..| +...+..+...+...|+.+.|...++++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 444 567788888888889999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=73.70 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~ 777 (875)
..+.+++.+|+..|.++.+ +.|+.. .|..-.-+|.+.|.++.|++-.+... ++|.. .+|..|..++...|+++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556677777777777765 555433 45555667777777777776666653 55543 667777777777777777
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
|+++|+++++++|++....-.|.++-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 7777777777777777555555444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00061 Score=77.02 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=104.7
Q ss_pred cCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC--C-CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhH
Q 002834 382 HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR--R-DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITI 458 (875)
Q Consensus 382 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 458 (875)
.+..++....+..|+..|...+++++|.++.+.... | ....|-.+...+.+.++.+++..+ .+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------- 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------- 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------
Confidence 344566665788888888888888888888876533 3 333444444466666766665555 222
Q ss_pred HHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhh
Q 002834 459 LTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYA 536 (875)
Q Consensus 459 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~ 536 (875)
.......++..+..+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+- | |+.+.|.+.-.|.
T Consensus 91 ----~~~~~~~~~~~ve~~~~~i~~~-----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 ----DSFSQNLKWAIVEHICDKILLY-----GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred ----hhcccccchhHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 2222333333333344444443 223335567777788888888888888877763 3 6667777777776
Q ss_pred cCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 537 NCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 537 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
.. ++++|.+++.++... |...+++.++.++|.++...
T Consensus 162 e~-dL~KA~~m~~KAV~~-----------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR-----------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH-----------HHhhhcchHHHHHHHHHHhc
Confidence 66 777777776654332 45566777777777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.004 Score=75.27 Aligned_cols=323 Identities=11% Similarity=-0.027 Sum_probs=211.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccC---CCcccHHHHHHHhhcCCChHHHHHHHHhhhcC----C---C-cc----HHHHHHH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK---RNLVTFNPVISGYANCGSADEAFMTFSRIYAR----D---L-TP----WNLMIRV 565 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---~-~~----~~~l~~~ 565 (875)
......|+++.+...++.+... .+..........+...++++++...+...... + . .. ...+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445678888888888776431 12333333444556789999999888776321 1 1 11 2334456
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCc----chHhcHHHHhhcccchHHHHHHHHHHHHhcC----C--CchHHHHHHHHh
Q 002834 566 YAENDFPNQALSLFLKLQAQGMKPDA----VTIMSLLPVCSQMASVHLLRQCHGYVIRACF----D--GVRLNGALLHLY 635 (875)
Q Consensus 566 ~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~ 635 (875)
+...|++++|...+++....-...+. .....+...+...|+++.+...+........ . .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999997763111121 1233344456678999999998887765422 2 223455667788
Q ss_pred HhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hhhHHHHHHH
Q 002834 636 AKCGSIFSASKIFQCHPQ-------K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLEL--GVNPD--HVVITAVLSA 700 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~a 700 (875)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998876432 1 1223445566677789999999999987653 11222 2234445557
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChhHH-----HHHHHHhhcCCChHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQY-----ASLVDLLARGGQISDAYSLVNRMPVE--ADC----NVWGTLLGAC 769 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 769 (875)
....|+.++|.+.++++............+ ......+...|+.++|.+++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999999886532221111111 11224455689999999998776421 111 1134566677
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCcc------HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGN------YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
...|+.+.|...++++++........ +..++.+|...|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78899999999999999986554433 3356888999999999999999988754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.043 Score=60.55 Aligned_cols=487 Identities=13% Similarity=0.078 Sum_probs=222.4
Q ss_pred hHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH
Q 002834 296 YLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG 372 (875)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 372 (875)
..+.|+.++|..+++.... .|..|...+-..|...++.++|..+|++..+.. |+..-...+..++.+.+++..-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888877654 366778888888888899999999998888754 7777777777788777776655
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCC-C
Q 002834 373 KEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEG-I 451 (875)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 451 (875)
.+.--++.+. .+......|+ +++.+... ...++..... + -..-|...++.+++.+ -
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWs-V~Slilqs------------~~~~~~~~~~-i--------~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWS-VISLILQS------------IFSENELLDP-I--------LLALAEKMVQKLLEKKGK 186 (932)
T ss_pred HHHHHHHHHh-CCcccchHHH-HHHHHHHh------------ccCCcccccc-h--------hHHHHHHHHHHHhccCCc
Confidence 4444333332 1222221222 22221111 0011100000 0 0011222333333322 1
Q ss_pred CCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccHHH
Q 002834 452 RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTFNP 530 (875)
Q Consensus 452 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ 530 (875)
.-+..-...-+......+.+++|..++..-...... +.+...-+--++.+...+++.+..++-.++..+ +|- |..
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~--~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd--y~~ 262 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLT--SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD--YKI 262 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc--hHH
Confidence 111111111122233344455555544222211110 223333345556666666666666666666554 222 332
Q ss_pred HHHHh----------------hcCCChHHHHHHHHhhhcC-CCccHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCC
Q 002834 531 VISGY----------------ANCGSADEAFMTFSRIYAR-DLTPWNLMIRVYAE---NDFPNQALSLFLKLQAQGMKPD 590 (875)
Q Consensus 531 l~~~~----------------~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~ 590 (875)
.+..+ ...+..+...+..++.... .-.||-+-+..+.+ -|+.++++..|-+-. |-.|
T Consensus 263 ~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp- 339 (932)
T KOG2053|consen 263 YTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP- 339 (932)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc-
Confidence 22211 1122333333333333333 33345555555444 477777655443321 2222
Q ss_pred cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCc---h---HHHHHHHHhHhcCCH---------H---HHHHHhccCC
Q 002834 591 AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGV---R---LNGALLHLYAKCGSI---------F---SASKIFQCHP 652 (875)
Q Consensus 591 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~l~~~~~~~g~~---------~---~A~~~~~~~~ 652 (875)
.+..=+..+...=..+.-..+............ . .+...+..-.-.|.+ . +-...|+...
T Consensus 340 --cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 340 --CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred --HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 111111111111111111111111111100000 0 000111111111110 0 0011111111
Q ss_pred C------C------Ch---hhHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 653 Q------K------DV---VMLTAMIGGYAMHGMGK---AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 653 ~------~------~~---~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
. | +. -+-|.|+..+-+.++.. +|+.+++...... +-|..+-..+++.|+-.|-+..|.+.|
T Consensus 418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 0 1 11 24567788888887654 6777777766642 334455566777899999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+.- ..|.-|...|. +...+...|++..+...++... ...+..--.-++.-..++|.+.+-.+...---.+.-..
T Consensus 497 ~tLdI-K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~ 574 (932)
T KOG2053|consen 497 KTLDI-KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSL 574 (932)
T ss_pred Hhcch-HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHH
Confidence 88754 34555543222 3345566778877777766652 11111111122333346677666544422111111110
Q ss_pred ----CccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 793 ----IGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 793 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...-..........++..+-.+....|+
T Consensus 575 q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 575 QKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 0112233445666777777777777776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=50.78 Aligned_cols=34 Identities=35% Similarity=0.637 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH 691 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 691 (875)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=64.39 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh--hHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP--EQYAS 732 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 732 (875)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|.. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344444444 2555666666666665541 111 112222334555566666666666666552 211111 13333
Q ss_pred HHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
+..++...|++++|+..++..+..+ .+..+.....++...|+.+.|+..|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555566666665555543111 222333333444444444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00045 Score=61.59 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC----NVWGTLLGA 768 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~ 768 (875)
..++.++ ..++...+...++.+.+.++-.|- ....-.+...+...|++++|...++.+. ..|++ .....|...
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 3334433 477888888888888775433321 2355567788888899999998888875 23443 344556677
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+...|+++.|...++.. .-.|-.+..+.++|++|.+.|++++|...++.
T Consensus 95 ~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888999888888662 33344566777889999999999999887764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=51.06 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=32.4
Q ss_pred eeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 002834 213 VSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246 (875)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 246 (875)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999996
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-05 Score=71.96 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=80.1
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
=++-+.+.+++++|+..|.++. +.| |++.|..-..+|.+.|.++.|++..+.++.+||....+|..||.+|...|+++
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456778899999999999885 666 67889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|++.+++..+
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 99999877544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.2e-05 Score=63.77 Aligned_cols=78 Identities=6% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEA---DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
.|++++|+.+++++. ..| +...|..+..++...|++++|...+++ .+.+|.++.....+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666553 222 344555566666777777777777777 666777766677778888888888888887
Q ss_pred HHH
Q 002834 816 RKL 818 (875)
Q Consensus 816 ~~~ 818 (875)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-05 Score=49.88 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=31.8
Q ss_pred eeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCC
Q 002834 212 VVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKP 245 (875)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 245 (875)
+.+||.+|.+|++.|+++.|.++|++|++.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-05 Score=60.56 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
+..++..+...|++++|...++++. ..| +...+..+...+...++++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677777888888888887763 334 34667777777788889999999999999999988888889999999999
Q ss_pred CchhHHHHHHHHHh
Q 002834 808 RWDGVVEIRKLMKT 821 (875)
Q Consensus 808 ~~~~A~~~~~~~~~ 821 (875)
++++|.+.++....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988776543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.2e-05 Score=48.61 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.3e-05 Score=58.50 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC-CchhHHHHHHHHH
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA-RWDGVVEIRKLMK 820 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 820 (875)
++.+|..+...+...|+++.|+..++++++++|+++.+|..+|.+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 7999999776654
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00079 Score=62.24 Aligned_cols=181 Identities=10% Similarity=0.060 Sum_probs=139.4
Q ss_pred hcCCHHHHHHHhccCCC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCc
Q 002834 637 KCGSIFSASKIFQCHPQ--------KDV-VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGL 706 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~ 706 (875)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+-. -+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 35677888888876543 333 24555666777889999999999999886 4 65544333333 3556799
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
+++|.++++...++ -+-|..++-.-+-++-..|+.-+|++-+.... +..|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999874 23345577777777788898889998877763 778999999999999999999999999999
Q ss_pred HhcccCCCCccHHHHHHHHHhcCCc---hhHHHHHHHHHh
Q 002834 785 LFEMEADNIGNYVVMSNLYAADARW---DGVVEIRKLMKT 821 (875)
Q Consensus 785 ~~~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 821 (875)
++-..|-++-.+..|+.+++-.|-. +-|.+.+.+..+
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888754 445555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00022 Score=74.11 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHE 774 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 774 (875)
...+...|++++|++.|+++.+ ..|+ ...|..++.+|.+.|++++|+..++++. ..| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4456677888888888888876 4554 4477778888888888888888888774 455 45677777778888888
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888888888776665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.8e-05 Score=57.28 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...+...|+++.|+..++++++.+|+++..+..+|.++...|++++|+..+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999988877643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=61.83 Aligned_cols=91 Identities=8% Similarity=-0.088 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC---CccHHHHHHH
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN---IGNYVVMSNL 802 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 802 (875)
...+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444455555555555554442 1221 1233444455555555555555555555555553 2345555566
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 002834 803 YAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~~~~~ 821 (875)
|...|++++|.+.++.+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 6666666666665555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00022 Score=62.06 Aligned_cols=101 Identities=8% Similarity=0.066 Sum_probs=83.2
Q ss_pred hCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 721 QGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 721 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.|+.++. +.......-+..+|++++|..+|.-+- ..| ++..|..|...|...++++.|+..|-.+..++++||.+++
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3455442 234445556677899999999998774 344 6677888888889999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHh
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|..|...|+.++|...+....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=68.14 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcccCCCCccHHH
Q 002834 724 KPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HEVELGRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 798 (875)
+-|.+.|..|+.+|.+.|+.+.|...|.+.. +.| ++..+..+..++... ....++..++++++.+||.|+.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457799999999999999999999998884 444 567777777776543 35789999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 799 MSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
|+..++++|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=59.93 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 767 (875)
+..+...+...|++++|.+.|+++.+.+.-.|. ...+..++.++.+.|++++|.+.++.+. ..|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455556666666666666666552211111 2345556667777777777777776653 2232 345666666
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77777888888888888888888776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.062 Score=53.36 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=164.4
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCc--chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDA--VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
.-.|++++|.+-|+.|... |.. ..+..|.-...+.|..+.+.++-+.....-+.-+....+.+...+..|+++.|
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 4578999999999998752 222 22334444556778889999988888888888888888999999999999999
Q ss_pred HHHhccCCC-----CChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHhhcCcHHHHHHH
Q 002834 645 SKIFQCHPQ-----KDVV--MLTAMIGGYA---MHGMGKAALKVFSDMLELGVNPDHVVITAV-LSACSHAGLVDEGLEI 713 (875)
Q Consensus 645 ~~~~~~~~~-----~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~a~~~~g~~~~a~~~ 713 (875)
+++++.-.. +++. .--.|+.+-+ -.-+...|...-.+..+ +.||.+.-..+ ..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 999986443 4443 1222332222 12355666666655555 67776553333 4489999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM----PVEADC-NVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
++.+-+ ..|.+..+.. ..+.|.|+... +-++.. ..+||. ....+...+....|++..|....+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999965 5565554432 23456665432 222222 246654 55666777778899999999999999999
Q ss_pred cCCCCccHHHHHHHHHhc-CCchhHHHHHH
Q 002834 789 EADNIGNYVVMSNLYAAD-ARWDGVVEIRK 817 (875)
Q Consensus 789 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 817 (875)
+|.. ..|.+|+.+-... |+-.++.....
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 9964 5688899987776 88888877543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=72.36 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
.....+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++++.+ +.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34566778899999999999999852 33455677777799999999999999999977 5665 4588899999999
Q ss_pred CCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEADCNVWGTLLGAC 769 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 769 (875)
.|++++|+..+++.. ..|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999885 677665555555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00098 Score=61.50 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYA 731 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 731 (875)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...++++.+ ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677778888888999999999998887533332 34677777788899999999999988876 4454 44667
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
.++.++...|+...+..-++.. ...++.|.+.++++++++|++ |......+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7778888877766655433321 123677889999999999887 5445555554444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=2.6e-05 Score=48.40 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=31.2
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
++++++++|+++.+|..||++|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00058 Score=67.60 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=151.1
Q ss_pred HHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccc
Q 002834 531 VISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMAS 606 (875)
Q Consensus 531 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~ 606 (875)
....+.+..++..|+..+....+..+.. |..-+..+..-+++++|+--.+.-.+ ++|.. ......-+++...+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHH
Confidence 3445666777777777777665544333 66666677777777776655444332 23321 123333334444444
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHH-HHHHHHcCChHHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAM-IGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 680 (875)
...+.+.+..- . . +....|+..++.... |-...|..+ ..++.-.|+.++|...--
T Consensus 133 ~i~A~~~~~~~--------~-------~----~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 133 LIEAEEKLKSK--------Q-------A----YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHHhhhh--------h-------h----hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444333200 0 0 011122222222221 222334333 245667788888877776
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-------------HHHHHHHHhhcCCChHHH
Q 002834 681 DMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-------------QYASLVDLLARGGQISDA 746 (875)
Q Consensus 681 ~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A 746 (875)
..++. .++ ......-..++...++.+.|...|++..+ ..|+.. .+..=++-..+.|++.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 66553 222 22221112245567788888888887754 555522 112223445678888888
Q ss_pred HHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHH
Q 002834 747 YSLVNRMP-VEAD-----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLM 819 (875)
Q Consensus 747 ~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 819 (875)
.+.+.+.. +.|+ ...|........+.|+.+.|+.-.+.+++++|.-..+|..-++.|...++|++|.+- .+.|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887774 4443 344555555666788888888888888888888888888888888888888888884 4444
Q ss_pred H
Q 002834 820 K 820 (875)
Q Consensus 820 ~ 820 (875)
+
T Consensus 349 q 349 (486)
T KOG0550|consen 349 Q 349 (486)
T ss_pred h
Confidence 3
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=70.54 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=67.3
Q ss_pred CChhhHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhc--------CcHHHHHHHHHHhHH
Q 002834 654 KDVVMLTAMIGGYAMH--G---MGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHA--------GLVDEGLEIFRSIEK 719 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 719 (875)
.+..+|...+.+.... + ...+|+.+|++..+ ..|+... +..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566666666654432 2 25677888888777 4666432 22222222111 112223333332222
Q ss_pred HhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 720 VQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 720 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
......+...|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10112223344444444444556666665555553 4455555555555555556666666666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0075 Score=63.25 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=121.9
Q ss_pred HHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH
Q 002834 293 VSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG 372 (875)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 372 (875)
...++-.|.+.+|.++|.+ .|.-..|+++|.+|+--. ..+-+...|+.++-
T Consensus 639 A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD-----------~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD-----------YAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH-----------HHHHHhhcCChHHH
Confidence 3445567788888777655 466667777776654321 12223344444444
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCC
Q 002834 373 KEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIR 452 (875)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 452 (875)
+.+.+.-.+.......+ .+...++...|+.++|..+. ..+|-.+-+.++-+++-.
T Consensus 690 KmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~---- 744 (1081)
T KOG1538|consen 690 KMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK---- 744 (1081)
T ss_pred HHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----
Confidence 44444433332222211 23344555566666654432 333434444444333321
Q ss_pred CChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHH
Q 002834 453 PDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVI 532 (875)
Q Consensus 453 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 532 (875)
.+..+...+-.-+.+...+..|.++|..+-+. ..++++....+++++|..+-++.++- -...|-.-.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ksiVqlHve~~~W~eAFalAe~hPe~-~~dVy~pya 811 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------KSLVQLHVETQRWDEAFALAEKHPEF-KDDVYMPYA 811 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH------------HHHhhheeecccchHhHhhhhhCccc-cccccchHH
Confidence 12233333333344556666777777666544 45788888999999999999888774 222344445
Q ss_pred HHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 002834 533 SGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGM 587 (875)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 587 (875)
+-++...++++|.+.| .+.|+..+|..+++++....+
T Consensus 812 qwLAE~DrFeEAqkAf------------------hkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAF------------------HKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhhhhhHHHHHHHH------------------HHhcchHHHHHHHHHhhhhhh
Confidence 5566777888887776 788999999999998876544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=64.01 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.+..++..+...|++++|...+++.. ..|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45556666666666666666666552 1222 356777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 002834 804 AADAR 808 (875)
Q Consensus 804 ~~~g~ 808 (875)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.5e-05 Score=45.43 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.0
Q ss_pred eeHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 002834 213 VSWNAVISGLSENKVLGDAFRLFSWMLTEPI 243 (875)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 243 (875)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=56.45 Aligned_cols=124 Identities=8% Similarity=-0.003 Sum_probs=54.3
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC---CHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA---DCNVW 762 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 762 (875)
-|+...-..|..+....|+..+|...|++... |+-. |....-.+.++....++..+|...+++.. ..| .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444444455555555555555554433 2222 23344444444444555555554444431 111 11222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
..+...+...|..+.|+..++.++.-.|. +..-..++..+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 23334444455555555555555554442 2233334444455555444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0078 Score=56.38 Aligned_cols=148 Identities=13% Similarity=0.062 Sum_probs=109.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh----h
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL----A 738 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~ 738 (875)
...|+..|++++|+....... .......+ ...+.+..+++-|.+.+++|.+ +.- ..+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ide-d~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDE-DATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cch-HHHHHHHHHHHHHHhc
Confidence 456788899999999887732 22222222 2345677789999999999966 332 23555454444 4
Q ss_pred cCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH-H
Q 002834 739 RGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE-I 815 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 815 (875)
-.++..+|.-+|++|. ..|++.+.+-.+.+|...||++.|+..++.++..+|++|.++..+.-.-.-.|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4568999999999995 678888888888888999999999999999999999999888777766667788766655 4
Q ss_pred HHHHH
Q 002834 816 RKLMK 820 (875)
Q Consensus 816 ~~~~~ 820 (875)
...++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.1 Score=52.83 Aligned_cols=80 Identities=10% Similarity=-0.028 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHH
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 578 (875)
.+.-+...|....|.++-.+..- |+-.-|-..+.+++..++|++-..+-.. +..|..|..++.++.+.|+..+|..+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 34444455555555555544432 3555666666666666666655554332 34455566666666666666666555
Q ss_pred HHH
Q 002834 579 FLK 581 (875)
Q Consensus 579 ~~~ 581 (875)
..+
T Consensus 260 I~k 262 (319)
T PF04840_consen 260 IPK 262 (319)
T ss_pred HHh
Confidence 544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.12 Score=51.44 Aligned_cols=244 Identities=15% Similarity=0.047 Sum_probs=149.4
Q ss_pred HhcCCHHHHHHHHHhhccCCCcc--cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEKRNLV--TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~ 578 (875)
.-.|+++.|.+-|+.|...|... -...|.-.-.+.|..+.|...-++....-+.. +...+...+..|+|+.|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 35688999999999998876432 23334444457788888888888776655444 67788888999999999999
Q ss_pred HHHHHHCC-CCCCcch--HhcHHHHhhc---ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCC
Q 002834 579 FLKLQAQG-MKPDAVT--IMSLLPVCSQ---MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 579 ~~~m~~~g-~~p~~~~--~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
++.-.... +.++..- -..|+.+-.. ..+...++..-....+..++-......-...+.+.|++.++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 98765443 3444321 2233322211 1234455555556666655533333444567778888888888887765
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 653 Q--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE-LGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 653 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
+ |.+..|. ...+++.|+. ++.-+++..+ ..++|| ......+..+-...|++..|..--+...+ ..|...
T Consensus 291 K~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres 363 (531)
T COG3898 291 KAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRES 363 (531)
T ss_pred hcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhh
Confidence 5 3333332 2233444433 3333333222 114554 34555566677777888877776655544 677777
Q ss_pred HHHHHHHHhhcC-CChHHHHHHHHhCC
Q 002834 729 QYASLVDLLARG-GQISDAYSLVNRMP 754 (875)
Q Consensus 729 ~~~~l~~~~~~~-g~~~~A~~~~~~~~ 754 (875)
.|..|.++-... |+-.++..++-+..
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 887777776544 88888888877764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=44.94 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGV 687 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 687 (875)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0041 Score=57.17 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34567777777888888888888888876432221 23677777788888888888888888766 3444 335555
Q ss_pred HHHHhh-------cCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 733 LVDLLA-------RGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 733 l~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++.++. +.|++++|.. .++.|...++++++.+|.+.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH
Confidence 666665 3333333332 23466777888888888653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.016 Score=60.88 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 746 (875)
+.+|..+-++++-.++-. .+..+...+..-+.+...+..|-++|.+|-. ...+++.....|+|+||
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHh
Confidence 445555555555555432 2344444444455566677788889988744 24578888999999999
Q ss_pred HHHHHhCC-CCCCH
Q 002834 747 YSLVNRMP-VEADC 759 (875)
Q Consensus 747 ~~~~~~~~-~~p~~ 759 (875)
..+-++.| +.||.
T Consensus 793 FalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 793 FALAEKHPEFKDDV 806 (1081)
T ss_pred HhhhhhCccccccc
Confidence 99999987 56664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00032 Score=53.75 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=49.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...+...++++.|.+.++++++++|+++..+...|.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999999988777653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=52.84 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++..+.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888999998888874 456 457788888888899999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00062 Score=62.62 Aligned_cols=91 Identities=9% Similarity=-0.133 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
...|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|+.+.|+..++++++++|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455666777777788888888777763 2222 2478888888889999999999999999999999888888888
Q ss_pred HHH-------hcCCchhHHHHHH
Q 002834 802 LYA-------ADARWDGVVEIRK 817 (875)
Q Consensus 802 ~~~-------~~g~~~~A~~~~~ 817 (875)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 888 7888876655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=53.48 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.+..++.++...|++++|.+.++... ..| +...+..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444444444444444432 122 223455555555556666666666666665555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00049 Score=54.42 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=43.4
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGV-NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 746 (875)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|.+++++. + ..|+ ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566777777777766422 113333444555666777777777776651 1 2222 23333446666666777776
Q ss_pred HHHHHh
Q 002834 747 YSLVNR 752 (875)
Q Consensus 747 ~~~~~~ 752 (875)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.021 Score=57.52 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHhHhc-CCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hh-hH
Q 002834 631 LLHLYAKC-GSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HV-VI 694 (875)
Q Consensus 631 l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~~ 694 (875)
+...|... |++++|.+.|++... .. ..++..++..+.+.|++++|+++|++....-...+ .. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445454 555555555554332 11 23456677888889999999999998876532221 11 23
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHh-CCCCC--hhHHHHHHHHhhc--CCChHHHHHHHHhCC
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQ-GIKPT--PEQYASLVDLLAR--GGQISDAYSLVNRMP 754 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 754 (875)
...+-++...||...|.+.|++..... ++..+ ......|++++-. ...+++|..-++++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333446667789999999888875421 22222 2245566666643 446777777777763
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00014 Score=54.77 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=39.5
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|+++.|++.++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888887766543
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=54.04 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|++++|.++|+++.. ..| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555544 222 2334444555555555555555555544
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.021 Score=57.52 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-CcHHHHHHHHHHhHHHhCCCCC----hhHHHHHH
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA-GLVDEGLEIFRSIEKVQGIKPT----PEQYASLV 734 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 734 (875)
...+..|...|++..|-..+.++ ...|... |++++|+++|+++.+.+..... ..++..++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33456666777776666655553 4456666 8889999988888775433322 33667788
Q ss_pred HHhhcCCChHHHHHHHHhCC---CC-C--CHHHHHHHH---HHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 735 DLLARGGQISDAYSLVNRMP---VE-A--DCNVWGTLL---GACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~---~~-p--~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
..+.+.|++++|.+++++.. .. + ...+-..++ -.+...||...|.+.+++..+.+|....+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 89999999999999998863 11 1 111112222 23345689999999999999999876554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0049 Score=67.06 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=95.7
Q ss_pred CCCCChhhHHHHHHHHhh--c---CcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcC--------CChHHHHHHHH
Q 002834 686 GVNPDHVVITAVLSACSH--A---GLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARG--------GQISDAYSLVN 751 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~A~~~~~ 751 (875)
+.+.|...|...+++... . +..+.|..+|+++.+ ..|+.. .|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356777888888886543 2 347799999999987 788853 555544444221 23345555555
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 752 RMP----VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 752 ~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.. ...++.++..+.-.....|+++.|...++++++++| +...|..+|.+|...|+.++|.+.+++...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 532 233456677776666678999999999999999999 578999999999999999999998766544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00049 Score=51.98 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhcccC
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH-EVELGRVVANRLFEMEA 790 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 790 (875)
...|..++..+...|++++|+..+++.. ..| ++.+|..+..++...| +++.|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777788888888888888887764 455 4477888888888888 68999999999999887
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.32 Score=49.36 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchh
Q 002834 393 NALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREG 472 (875)
Q Consensus 393 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 472 (875)
+.-+.-+...|....|.++-.+..-|+...|-..+.+++..++|++-..+-.. +-++.-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44455667788899999999999889999999999999999999887765432 234578888889998888888
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
.|..+...+.. ..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~~-------------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIPD-------------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCCh-------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 88877765221 4567888888888888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.043 Score=55.92 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=103.0
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCC-C------hhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQK-D------VVMLTAMIGGYAM---HGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
..+...++-.|-...+++...++++.+... + ...-...+-++-+ .|+.++|+.++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334444555577777777777777766652 1 1112233445555 78888999998886666567777777
Q ss_pred HHHHHHHhh---------cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH----HHHHHH---Hh-C----
Q 002834 695 TAVLSACSH---------AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS----DAYSLV---NR-M---- 753 (875)
Q Consensus 695 ~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---- 753 (875)
..+.+.|-. ....++|...|.+. +.+.|+..+--.++-++...|... +..++. .. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 766665422 23467888888877 457777543333333444444322 222222 11 1
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 754 PVEA--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 754 ~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...+ +-..+.+++.++...||.++|.+++++++++.|+.-
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1233 334556999999999999999999999999977643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=59.37 Aligned_cols=136 Identities=17% Similarity=0.085 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 357788888888888999999999998542 3334444444443 3345677779999999988643 44566778888
Q ss_pred HhhcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 736 LLARGGQISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.+.+.|+.+.|..++++.. .-|.. .+|..++..-.++|+++....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8999999999999999885 23333 589999999999999999999999999998885543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=64.67 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHH---hHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-------CC-CCH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRS---IEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-------VE-ADC 759 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~~ 759 (875)
..|..|...|.-.|+++.|+...+. +.+.+|-+... ..+..+.+++.-.|.++.|.+.++.-. .+ -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3466666667778899999876553 22335555443 478889999999999999999987652 11 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccC------CCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEA------DNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
....+|.+.|....++++|+....+=+.+.. ....++..|++.|...|..++|+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4456778888888889999988776655421 23457899999999999999998853
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0007 Score=45.30 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
.+|..+..++...|+++.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999998888764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.011 Score=51.52 Aligned_cols=89 Identities=7% Similarity=-0.033 Sum_probs=49.5
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL 706 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 706 (875)
++...+...|++++|.++|+-+.. .+..-|..|..++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344444556666666666654432 234455556666666666666666666665532 2234445555556666666
Q ss_pred HHHHHHHHHHhHH
Q 002834 707 VDEGLEIFRSIEK 719 (875)
Q Consensus 707 ~~~a~~~~~~~~~ 719 (875)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.049 Score=53.11 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
....|.+.|++..|..-++.+++.-|+.+. +...+...|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345577889999999999999999988654 67788899999999999999887764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.068 Score=53.60 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc--------HHHHHHHHHhcCCchhHHHH
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGN--------YVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--------~~~l~~~~~~~g~~~~A~~~ 815 (875)
|-.+++.-+...+.+......+.++..-|+-... +--.+..|...++..++.+.
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 3344444444444444444555556666653322 33456677777777766664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.014 Score=49.01 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHh
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLL 737 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 737 (875)
.+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677889999999999999999886655 33466677788999999999999998877432211 122334455678
Q ss_pred hcCCChHHHHHHHHhC
Q 002834 738 ARGGQISDAYSLVNRM 753 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~ 753 (875)
...|+.+||++++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8899999999877553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0038 Score=61.21 Aligned_cols=84 Identities=6% Similarity=-0.104 Sum_probs=42.5
Q ss_pred hcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCc
Q 002834 738 ARGGQISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARW 809 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 809 (875)
.+.|++++|+..|+.+. .-|+. .++..+..++...|+++.|...++++++..|+++ ..+..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34455555555444442 22221 2344444555555566666666666665555532 2344445556666666
Q ss_pred hhHHHHHHHHHh
Q 002834 810 DGVVEIRKLMKT 821 (875)
Q Consensus 810 ~~A~~~~~~~~~ 821 (875)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.066 Score=50.12 Aligned_cols=167 Identities=7% Similarity=0.019 Sum_probs=115.8
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCC--Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQK--DV--------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
++|...+.-..-.++-...++.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-+......+.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 44444444444445555555543332 12 234567777777888889999999999976566777778888
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHh----CCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQ----GIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
+.-.+.||.+.|..+|++..+.. ++.-.......+...|.-++++-+|...+.+++ .+| ++...++-.-+..-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 88899999999999999776543 233333344455567778889999999999987 334 444555554444556
Q ss_pred CChhHHHHHHHHHhcccCCCCcc
Q 002834 773 HEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
|+...|++..+++.+..|.....
T Consensus 300 g~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHhccCCccchh
Confidence 89999999999999999875543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0019 Score=49.39 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.+|.+.+++++|.+.++.+. ..| ++..|......+...|+++.|.+.++++++..|+++......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56778888888888888875 445 4567777778888899999999999999999998877655443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=46.00 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccH
Q 002834 722 GIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNY 796 (875)
Q Consensus 722 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~ 796 (875)
.+-|+..+-..|...+.+.|+..||...+++.. +-.|+.....+.++...-+++..|...++++.+..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344555555555555555555555555555542 3344444445555555555555555555555555543 34445
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++..|...|++++|..-++...+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555554444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=64.41 Aligned_cols=64 Identities=8% Similarity=-0.129 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+...|+++..++...|+++.|+..++++++++|+++.. |..++.+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888888754 88888888888888888887666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0094 Score=50.08 Aligned_cols=83 Identities=16% Similarity=0.020 Sum_probs=55.2
Q ss_pred HHHHhhcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC---CCccHHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD---NIGNYVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 804 (875)
+..++-..|+.++|+.++++.. ..+. ...+..+...++..|++++|..++++.++..|+ +......++..+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445556666666666666653 1111 234556667777778888888888888777777 5556666777788
Q ss_pred hcCCchhHHHH
Q 002834 805 ADARWDGVVEI 815 (875)
Q Consensus 805 ~~g~~~~A~~~ 815 (875)
..|++++|++.
T Consensus 87 ~~gr~~eAl~~ 97 (120)
T PF12688_consen 87 NLGRPKEALEW 97 (120)
T ss_pred HCCCHHHHHHH
Confidence 88888888874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.72 Score=49.67 Aligned_cols=166 Identities=10% Similarity=-0.009 Sum_probs=78.7
Q ss_pred HHHHhcCCChhHHHHHHHhcCCC-----CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 396 VSFYAKCSDMEAAYRTFLMICRR-----DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
|.++.+.|++-...++++.-... -...|+.+...+.....|++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 44445555555555555432221 1135566666666666666666655442110 112233333333
Q ss_pred hhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 471 EGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
++..+.+-..+ +.+....-.+.+++.+.|.-++|.+.+-+-... ...+..|...++|.+|.++-+.
T Consensus 838 f~~LE~la~~L--------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 838 FGELEVLARTL--------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhhHHHHHHhc--------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 33222222211 333444455566666666666665554432221 1233445555566666655555
Q ss_pred hhcCCCcc--------------HHHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 551 IYARDLTP--------------WNLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 551 ~~~~~~~~--------------~~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
..-+.+.+ ...-|..+.+.|++-+|.+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 43333333 11223445667777777777777754
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0075 Score=48.47 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHHhhccCC--------cchhhhHHHHHHHhCCCCCcchh
Q 002834 114 ILLSGFACSHVDDARVMNLFYNMHVRDQP-KPNSVTVAIVLSACARLGG--------IFAGKSLHAYVIKFGLERHTLVG 184 (875)
Q Consensus 114 ~li~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 184 (875)
..|..+...+ ++.....+|+.+++.| + .|+..+|+.+|.+.+++.- +-....+++.|+..+++|+..+|
T Consensus 30 ~~I~~~~~~~-d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENE-DYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHhhc-chHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455555668 9999999999999999 8 8999999999999886542 23455688889999999999999
Q ss_pred hHHHHHhHh
Q 002834 185 NSLTSMYAK 193 (875)
Q Consensus 185 ~~li~~~~~ 193 (875)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=58.88 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..++..+.-++.+.+++.+|++..++.. .++|+..+..-..+|...|+++.|+..++++++++|+|-.+..-|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3467778889999999999999999885 44566778788899999999999999999999999999998888888877
Q ss_pred hcCCchhH-HHHHHHHHh
Q 002834 805 ADARWDGV-VEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A-~~~~~~~~~ 821 (875)
+..++++. .++++.|=.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77777666 447888743
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0087 Score=60.01 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=92.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 777 (875)
...+.+.|++..|..-|+++...... .+.-..++..... ..-...+.++..+|.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-----ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhHHH
Confidence 55677777777777777776552111 0111112111111 1123456778888889999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHH
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYW 857 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~ 857 (875)
|++...+.++++|+|+.+++.-|.+|...|+++.|...++++.. ..|.+.+|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~ 329 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHH
Confidence 99999999999999999999999999999999999999888765 2477788888
Q ss_pred HHHHHHHHHHhc
Q 002834 858 VLSILDEQIKDQ 869 (875)
Q Consensus 858 ~~~~l~~~~~~~ 869 (875)
.|..|.+++++.
T Consensus 330 el~~l~~k~~~~ 341 (397)
T KOG0543|consen 330 ELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.018 Score=56.54 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=58.6
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCh
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA----DCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~ 775 (875)
.+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+.+. .-| .+..|..+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4456666666666666653211111 1355566677777777777776666662 112 235555566667778888
Q ss_pred hHHHHHHHHHhcccCCCCc
Q 002834 776 ELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~ 794 (875)
+.|+..++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 8888888888888887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0089 Score=59.88 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=61.3
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh-cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK-CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
..++..+-+.+..+.++.+|..+.+.+..+..+|...+.+-.. .++.+.|.++|+.+.+ .+...|...+.-+...+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 3333444444444444444444432222233344444444333 3344446666665544 44555666666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 671 MGKAALKVFSDMLELGVNPDH---VVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+.+.|..+|++.... +.++. ..|...+.--.+.|+.+...++.+++.+
T Consensus 85 d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 85 DINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666653 22222 2566666655666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.021 Score=45.96 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhhcC--------cHHHHHHHHHHhHHHhCCCCChhH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGV-NPDHVVITAVLSACSHAG--------LVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
-...|..+...+++...-.+|+.++..|+ -|+..+|+.++.+..+.. ++-+.+.+++.|.. .+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666777999999999999999999 899999999999766532 45567889999987 689999999
Q ss_pred HHHHHHHhhc
Q 002834 730 YASLVDLLAR 739 (875)
Q Consensus 730 ~~~l~~~~~~ 739 (875)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.15 Score=47.80 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHh-----cCC-CchHHHHHHHH
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA-----CFD-GVRLNGALLHL 634 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~l~~~ 634 (875)
.++.++...|.+.-.+.++++..+...+.++.-...+.+.--..|+.+.+...++.+.+. +.. ...+.......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 344444455555555555555555433334444444444445556666666665544443 222 33344445556
Q ss_pred hHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-------HHHH-HHhh
Q 002834 635 YAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT-------AVLS-ACSH 703 (875)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~-a~~~ 703 (875)
|.-++++..|...|.+++. .|++.-|.-.-++...|+..+|++.++.|.+. .|...+-+ ++.. +|+.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL~Ys~ 339 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYELEYSR 339 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHHHhhh
Confidence 6777888888888888775 45667777777777788999999999999884 45444333 2333 4445
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
+-+.+.++. .+.. +..||..
T Consensus 340 ~~~~k~~l~---~~ia--~~~~d~f 359 (366)
T KOG2796|consen 340 SMQKKQALL---EAVA--GKEGDSF 359 (366)
T ss_pred hhhHHHHHH---HHHh--ccCCCcc
Confidence 545544433 2222 5666643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=60.48 Aligned_cols=119 Identities=11% Similarity=0.024 Sum_probs=85.5
Q ss_pred CCCCcchHHHHHHHhhccCCcchhhhHHHHHHHh--CCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC----CCeeeH
Q 002834 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKF--GLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED----KDVVSW 215 (875)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 215 (875)
.+.+......++..+....+++.+..++-..... ....-..+..++|+.|.+.|..+.++.++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556667777777777777777777777766655 2333344556888888888888888888766443 788888
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccC
Q 002834 216 NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260 (875)
Q Consensus 216 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 260 (875)
|.|+..+.+.|++..|.++..+|...+.-.+..|..-.+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777766666666555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=54.02 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCCChhhHHHHHHHhc-----ccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHH
Q 002834 39 VRHNHQLFSAVLKSCT-----SLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWN 113 (875)
Q Consensus 39 ~~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 113 (875)
-..+..+|..+++.+. +.|.++....-+..|.+.|+.-|..+|+.|++.+=+ |.+- ...+|+.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~---------- 110 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA---------- 110 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH----------
Confidence 3457788888887775 457788888889999999999999999999998876 3321 2223322
Q ss_pred HHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCC
Q 002834 114 ILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161 (875)
Q Consensus 114 ~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (875)
+.--|-+ ..+-|++++++|...| +-||..|+..|+..+++.+.
T Consensus 111 -~F~hyp~---Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 -EFMHYPR---QQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HhccCcH---HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 2222222 5567899999999999 99999999999999987654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.042 Score=57.33 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=83.6
Q ss_pred CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHh--cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC----CChhh
Q 002834 586 GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA--CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ----KDVVM 658 (875)
Q Consensus 586 g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 658 (875)
+...+...+-.++..+....+++.+..+....... ... -+.+..+++..|.+.|..+++..++..-.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777776665554 333 445556778888888888888887776544 77888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
+|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777776666666666555555543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=56.93 Aligned_cols=128 Identities=9% Similarity=-0.038 Sum_probs=88.3
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHh----cCC--CchHHHHHHHHhHhcCCHHHHHHHhccCCC-------C--Ch
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRA----CFD--GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------K--DV 656 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~ 656 (875)
..|..|-..|.-.|+++.+...|+.-... |-. ....+..+..++.-.|+++.|.+.|..... . ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666777778999998888764432 333 455677788888888999999888875332 2 23
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLEL----G-VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.+..+|...|.-...+++|+..+.+=..- + .--....+.+|..++...|..++|+.+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566778888777888888877653321 1 122345677888888888888888887766544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.1 Score=48.31 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHhhccCchhhHHHH
Q 002834 402 CSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS----ITILTIIHFCTTVLREGMVKET 477 (875)
Q Consensus 402 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~ 477 (875)
-|++++|++++-++.++|.. |..+.+.|+|-.+.++++. .|-..|. ..|..+-..++....|+.|.++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988887753 5566677887777666543 1211221 2344444445555555555555
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHH
Q 002834 478 HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTF 548 (875)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 548 (875)
+..--.. ...+.+|.+...+++-+.+-..+++ +......+...+.+.|--++|.+.+
T Consensus 819 Y~~~~~~------------e~~~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCGDT------------ENQIECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhccch------------HhHHHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHH
Confidence 5432211 2344555555555555555555444 3333444555554444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.033 Score=51.06 Aligned_cols=97 Identities=19% Similarity=0.337 Sum_probs=76.9
Q ss_pred HHHhccC--CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-------------
Q 002834 645 SKIFQCH--PQKDVVMLTAMIGGYAMH-----GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA------------- 704 (875)
Q Consensus 645 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~------------- 704 (875)
...|+.. ..++-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 346777788888877754 66777778889999999999999999999877442
Q ss_pred ---CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 705 ---GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 705 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
.+-+-|++++++|.. +|+-||.+++..+++++++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 345779999999977 8999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.29 Score=47.71 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC--CCe----eeHHHHHHHHHcCCCcchHHHHHHHHH
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIED--KDV----VSWNAVISGLSENKVLGDAFRLFSWML 239 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~ 239 (875)
.+.+.|.+.|.+..|..-|+.+.+ |+. .....++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455667788888888777777664 332 244566778888888888887766553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.13 Score=50.00 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCh
Q 002834 618 IRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG---MGKAALKVFSDMLELGVNPDH 691 (875)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~ 691 (875)
...++.+..-|..|...|...|+.+.|...|.+..+ +++..+..+..++.... ...++..+|+++.. ..|+.
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ 226 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPAN 226 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCcc
Confidence 334444555555555555555555555555554332 34444444444433221 22445555555555 24444
Q ss_pred hhHHHHHH-HHhhcCcHHHHHHHHHHhHH
Q 002834 692 VVITAVLS-ACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 692 ~~~~~ll~-a~~~~g~~~~a~~~~~~~~~ 719 (875)
++-..++. .+...|++.+|...|+.|.+
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33333332 55555555555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.054 Score=48.34 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=70.3
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 778 (875)
....|+.+.+.+.++++...+.-.+ +... ..-.......+++. -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3556788888888887766443222 1111 11112222223322 123455667778889999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...+++++..+|-+...|..+..+|...|+..+|+++++.++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.22 Score=51.79 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHH-CCCCCChhh-HHHHHHHHh---------hcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 672 GKAALKVFSDMLE-LGVNPDHVV-ITAVLSACS---------HAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 672 ~~~A~~~~~~m~~-~g~~p~~~~-~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
.+.|+.+|.+... ..+.|+... |..+..++. ......+|.++-++..+ +.|+ ......++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4678888888872 235666433 222222211 13345566677666655 4443 4466667777777
Q ss_pred CCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH-HHhcCCchhHHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL-YAADARWDGVVEIR 816 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 816 (875)
.|+++.|..++++.. ..||. .+|......+.-.|+.+.|.+..+++++++|....+-++--++ .+-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 788889998888885 67765 6677777777788999999999999999999877665554455 44455677788765
Q ss_pred H
Q 002834 817 K 817 (875)
Q Consensus 817 ~ 817 (875)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.1 Score=44.14 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=108.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCC--CCChh-------hHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHP--QKDVV-------MLTAMIGGYA----MHGMGKAALKVFSDMLELGVNPDHVV 693 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~ 693 (875)
.+..++....+.++...|.+.+.-+. .|+.. +-.++-+..+ ..-+..+-+.+|+......+.-....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 33445555566677777766655332 23221 1111222222 12233445566666665432222111
Q ss_pred HHH--HHHHHhhcCc-HHHHHHHHHHhHHHhCCCCC-hhHHHHHH----HHhhc---CC---ChHHHHHHHHhCCCCC--
Q 002834 694 ITA--VLSACSHAGL-VDEGLEIFRSIEKVQGIKPT-PEQYASLV----DLLAR---GG---QISDAYSLVNRMPVEA-- 757 (875)
Q Consensus 694 ~~~--ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g---~~~~A~~~~~~~~~~p-- 757 (875)
... -..-+.+.|. -++|+++++.+.+ +.|. ..+-+.+. ..|.. .. ++-.-..++++....|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 111 1224556666 8889999988876 3332 22222211 12211 11 1222334455554333
Q ss_pred --CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 758 --DCNVWGTLLGA--CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 758 --~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+...-+.|..| ...+|++.++.-...-+.+..| .+.+|-++|-.+..+.++++|-+.++.+
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44556666655 4679999999999999999999 8999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.17 Score=48.80 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=101.0
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCC
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGT---LLGACRIHHE 774 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~ 774 (875)
......|+..+|...|+.... ..|+ ...-..|+++|...|+.++|..++..+|.+-....|.. -+.......+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 356778999999999998877 3333 45777889999999999999999999985444433433 2222333333
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHHHh-CCCcCCC-ceeEEEeCCEEeEEecCCCCCCC
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLMKT-RDLKKPA-ACSWIEVERKNNAFMAGDYSHPR 851 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~~~~~~-~~s~~~~~~~~~~f~~~~~~~~~ 851 (875)
.... ..+++-+..+|+|...-+.|+..|...|+.++|.+. +..|+. +|..... ....+ -.|-.=+..||.
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll------e~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL------ELFEAFGPADPL 291 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH------HHHHhcCCCCHH
Confidence 3322 234566678999999999999999999999999994 555543 3322211 11111 234444455676
Q ss_pred hHHHHHHHHH
Q 002834 852 RDMIYWVLSI 861 (875)
Q Consensus 852 ~~~~~~~~~~ 861 (875)
.....++|..
T Consensus 292 ~~~~RRkL~s 301 (304)
T COG3118 292 VLAYRRKLYS 301 (304)
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.15 Score=48.28 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=38.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 814 (875)
....|.+.|++..|..-++.+++..|+.+. ....++..|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345577889999999999999999998754 56778889999998885544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=3.1 Score=45.79 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.-+..-|+..+|.++-.+..-||-..|---+.+++..++|++-+++-+.+. + +.-|.-...+|.+.|+.++|.+
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhh
Confidence 334556777778887777777777777777777887777777655554432 1 4455557777888888888877
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 713 IFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
++-+... +.-.+.+|.+.|++.+|.++--
T Consensus 766 Yiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 766 YIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 7754411 1145677777777777776543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.065 Score=55.47 Aligned_cols=113 Identities=9% Similarity=0.088 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhc---------CCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLAR---------GGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
..+.|+.+|.++.....+.|+-. .|..+..++.. .....+|.++.++.. ..| |+.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 46788899999984445888743 66666555432 223455666666653 444 6677777777777788
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+++.|...+++++.++|+.+..|...|++.+-.|+.++|.+..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999997665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.48 Score=49.34 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHH--HHHHHHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNV--WGTLLGACR 770 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~--~~~l~~~~~ 770 (875)
..+..++.+.|+.++|.+.|++|.+++...-.......|+++|...+++.++..++.+-. .-|.+.+ |..-+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 445556677788888888888887643222223356667788888888888888877764 2344433 333332222
Q ss_pred hcCC---------------hhHHHHHHHHHhcccCCCCcc
Q 002834 771 IHHE---------------VELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 771 ~~~~---------------~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.-++ -..|.++..++++.+|.-|..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 2222 134678899999999876543
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.52 Score=44.73 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASL 733 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 733 (875)
..+-.....+...|++.+|++.|+++...-.... ......+..++.+.|+++.|...+++..+.+.-.|... .+-.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3344455666777888888888888876421111 22344556677778888888888888777555444432 22222
Q ss_pred HHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----------------H
Q 002834 734 VDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN-----------------Y 796 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~ 796 (875)
+.++... ..... ......+....|...++.+++..|+++-. -
T Consensus 86 g~~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 00000 00112233455666666666666665432 2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...+..|.+.|+|..|..-++.+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467889999999999998777765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.7 Score=43.39 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHh-------cHHHHhh-ccc---chHHHHHHHHHHHHhcCCCchH
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIM-------SLLPVCS-QMA---SVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~a~~-~~~---~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
+..++...++.++...|-..+.-+.-. .|+...-. .+-+..+ ... ++..-..++..+.....+...+
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 555666666777777666666555432 33322111 1111111 111 1222233344444444443333
Q ss_pred HHHHH---HHhHhcCC-HHHHHHHhccCCC---CChhhHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCChh-
Q 002834 628 NGALL---HLYAKCGS-IFSASKIFQCHPQ---KDVVMLTAMI----GGYAM---HGMGKAALKVFSDMLELGVNPDHV- 692 (875)
Q Consensus 628 ~~~l~---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~- 692 (875)
..-|+ .-+-+.|. -++|..++..+.+ -|..+-|... ..|.+ .....+-+.+-+-..+.|+.|-.+
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 33332 33445565 6778888876654 4554444322 22322 224455555666666778887543
Q ss_pred ---hHHHHHH--HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHH
Q 002834 693 ---VITAVLS--ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTL 765 (875)
Q Consensus 693 ---~~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 765 (875)
.-+.+.. -+...|++.++.-+-.-..+ +.|++.+|..++-++....+++||..++.++| |+..+|++-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 2333433 34568999998776555544 89999999999999999999999999999985 566665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.011 Score=45.94 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccc----CC---CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEME----AD---NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
++..+...+...|+++.|+..+++++++. ++ -+..+..+|.+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555666666666666655431 11 2345677888888888888888876553
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.056 Score=44.54 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=52.8
Q ss_pred HhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-C---ccHHHHHHHHHhcCCc
Q 002834 736 LLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-I---GNYVVMSNLYAADARW 809 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~---~~~~~l~~~~~~~g~~ 809 (875)
++...|+++.|++.|.+.. .+.++..|++-..+++.+|+.+.|..-+.+++++.-+. - ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666666666665553 22345666666666666677777766666666664222 1 2456666677777777
Q ss_pred hhHHHHHHHHHhCC
Q 002834 810 DGVVEIRKLMKTRD 823 (875)
Q Consensus 810 ~~A~~~~~~~~~~~ 823 (875)
+.|..=|......|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77776666555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.7 Score=43.18 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=76.4
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhH-HHHHHHH
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVML-TAMIGGY 666 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~ 666 (875)
..|...+.+..+..-++.|+.+|..+.+.+.. ++.++++++..|+ .|+...|..+|+.... +|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555566666666666666666666666643 5666666666554 4666677777775443 454443 3344555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
..-++-+.|..+|+..... +.-+ ...|..++.--+.-|+...+..+=+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6667777777777754442 2223 34566677766777777777776666655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.2 Score=41.57 Aligned_cols=193 Identities=18% Similarity=0.148 Sum_probs=131.5
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHP-----QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
..........+...+.+..+...+.... ......+......+...++...++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566666777777777777776643 23445566666777777788888888888877433331 22222222
Q ss_pred -HHhhcCcHHHHHHHHHHhHHHhCCCC----ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 002834 700 -ACSHAGLVDEGLEIFRSIEKVQGIKP----TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD--CNVWGTLLGACRI 771 (875)
Q Consensus 700 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~ 771 (875)
++...|+++.|...+++... ..| ....+......+...++.++|...+.... ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888743 333 22344444455667788888888887774 3333 5667777777888
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.+.|...+.++++..|.....+..++..+...|+++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999988888666677777777777778888886665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.16 Score=43.54 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHhhcCCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 804 (875)
-+....+.|++++|.+.++.+. ..| ...+-..|+.++.+.++++.|...+++.+++.|.++.+ +...|-.+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567788888888887773 222 22445567788889999999999999999999988763 444455555
Q ss_pred hcCC
Q 002834 805 ADAR 808 (875)
Q Consensus 805 ~~g~ 808 (875)
.+..
T Consensus 96 ~~~~ 99 (142)
T PF13512_consen 96 EQDE 99 (142)
T ss_pred HHhh
Confidence 5544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.036 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
++.+...|...|++++|+++|++..+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555443
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.5 Score=39.41 Aligned_cols=141 Identities=17% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+.|- ...-.++.+|.+.|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH
Confidence 44578888999999888763 23344444554444444555566666666443322221 134456667776666443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
....-+.+...+|.-+.-.+++..+++.+..+|...+.++++|.+.|+..+|.++++..=++|++
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23334566678888888889999888777778889999999999999999999999888888865
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.033 Score=34.58 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
..|..+..++...|+++.|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777778888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.024 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888999999999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.9 Score=49.98 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=88.9
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVI 618 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 618 (875)
++++.|+.-+.++. ...|.-..+.--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45555555554433 333444444445666666666664 56666665555444331 11
Q ss_pred HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh--HHH
Q 002834 619 RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV--ITA 696 (875)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ 696 (875)
+. ..+.--.-+|.++|+.++|++ +|...|+|.+|+.+..++.. .-|... -..
T Consensus 951 ~~-----~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 951 EE-----LMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred Hh-----ccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11 111222346888888888855 45557788888888877642 112211 144
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
|..-+..+++.-+|-++..+... .| ..-+..|+++..|++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 56667777777777777765543 22 22345567777788887776654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.27 Score=41.89 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
..|+..+..+++.+|+..|++..|+++++...+.++++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666666666666666666666666655555554444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.22 Score=44.30 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQY 730 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 730 (875)
+...++..+...|++++|+.+++++.... +-|...+..++.++...|+..+|.+.|+++.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 35556777788999999999999998852 55677888899999999999999999987753 36888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=7.1 Score=43.16 Aligned_cols=352 Identities=9% Similarity=0.025 Sum_probs=189.8
Q ss_pred HhccCChhHHHHHHHHH--------HHCCCCCChhhHH-----HHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHH
Q 002834 430 FSESGYNSQFLNLLNCM--------LMEGIRPDSITIL-----TIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIG 496 (875)
Q Consensus 430 ~~~~g~~~~a~~~~~~m--------~~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (875)
+.+..++++-..+.++. ..-|+..+..-|. .+|.-+...+.+..|.++-..+..... .. ..++
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~---~~-~~Vl 474 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES---QG-DRVL 474 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc---cc-cHHH
Confidence 44445555555444443 2345555544443 334444555666666666555432211 11 4566
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHhhccC-CCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--------cHHHHHH
Q 002834 497 NAILDAYAKCRN---IKYAFNVFQSLLEK-RNLVTFNPVISGYANCGSADEAFMTFSRIYARDLT--------PWNLMIR 564 (875)
Q Consensus 497 ~~li~~~~~~g~---~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~ 564 (875)
.....-+.+..+ -+-+..+-+++..+ -..++|..+..-....|+.+.|..+++.=...... -+..-+.
T Consensus 475 ~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 475 LEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 666666655532 22233333333331 25567777777777888888888887654332211 1555555
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 565 VYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 565 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
-..+.|+.+-...++..|... .+...|...+ .+...|..++....+..-. ..+-+.|- .++...+
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~-----~~l~d~y~-q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR-----ATLYDFYN-QDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch-----hhhhhhhh-cccchhh
Confidence 557777777777766665542 1111111111 1122233333333332110 01111111 1222222
Q ss_pred HHHhc--cC-----CCCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhhcCc
Q 002834 645 SKIFQ--CH-----PQKDVVMLTAMIGGYAMHGM----------GKAALKVFSDMLE-LGVNPDHVVITAVLSACSHAGL 706 (875)
Q Consensus 645 ~~~~~--~~-----~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~-~g~~p~~~~~~~ll~a~~~~g~ 706 (875)
...|. .. .++-..........+++... ..+-+.+.+.+.. .|..-...+.+-.+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 21111 10 01111223333444444332 1122222333322 2334455566777778888999
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
..+|.++-.+. . -||-..|..-+.++...++|++-+++-++.. .+..|.-+..+|.+.||.++|.+.+-+.-
T Consensus 700 ~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 700 NKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99998876555 2 3788888888899999999999999988874 25667778899999999999988876653
Q ss_pred cccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 787 EMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
.+ .-...+|.+.|++.+|.++-
T Consensus 772 ~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 772 GL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred Ch--------HHHHHHHHHhccHHHHHHHH
Confidence 32 14667889999999999864
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.61 Score=40.18 Aligned_cols=117 Identities=11% Similarity=-0.000 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL 736 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 736 (875)
-.-.....+.|++++|++.|+.+... .+.. ...-..++.++.+.|++++|...+++..+.+.-.|++ .|.....+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~g 91 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRG 91 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHH
Confidence 33344455667777777777777764 2222 2334556667777777777777777777643333332 33333333
Q ss_pred hhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 737 LARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+..-...+ ..+..+. ..=+-.+....|...++++++.-|++.
T Consensus 92 L~~~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 32211111 1111111 000112235677888888888888765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.9 Score=39.80 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=120.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDV-VMLTAMIG-GYAMHGMGKAALKVFSDMLELGVNP----DHVVIT 695 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~ 695 (875)
....+......+...+++..+.+.+..... ++. ........ .+...|+++.|...+++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344445555666667777778777776554 221 22333333 68899999999999999865 333 233344
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 002834 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRI 771 (875)
Q Consensus 696 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 771 (875)
.....+...++.+.+...+.+... ..|+ ...+..+...+...+.+++|...+.... ..|+ ...+..+...+..
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 444456778899999999999876 3344 5678888889999999999999988875 4454 4556666666666
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.++.+.+...+.+.++..|. +..+++.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 249 LGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 67899999999999999997 44444444433
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.3 Score=48.16 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=64.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVV---ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
|...+..+.|+++|++..+ +.|+..+ +..|+.+-.+ .++...++- .+ | ..|-..++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq-~I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQ-QI----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHH-HH----H--------HHHHHHhhccch
Confidence 4445566788889988877 5777654 4444443222 222222211 11 1 124456788898
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 743 ISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++.-.++++- .+++++....+|+.+|++++++++++.|..-
T Consensus 360 leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 8887776664 3667777788999999999999999988653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4 Score=39.04 Aligned_cols=162 Identities=15% Similarity=0.019 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~ 734 (875)
|-.-+..-.+.|++++|.+.|+.+... .+-+ ..+...++-++.+.+++++|+..+++..+.++-.|+.. .+...+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333344455778888888888888764 2222 33445555577788888888888888877677777654 222211
Q ss_pred HHhhc-----CCChHHHH-------HHHHhCC---CCCCHHHH------------HHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 735 DLLAR-----GGQISDAY-------SLVNRMP---VEADCNVW------------GTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 735 ~~~~~-----~g~~~~A~-------~~~~~~~---~~p~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
..+.. ..+...+. +++++.| ..||+..- ......|.+.|....|..-++.+++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11111 11222222 2333333 23343211 1334667889999999999999999
Q ss_pred ccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 788 MEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 788 ~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.-|+.+.. +..+..+|...|-.++|.+..+-+..
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 98877654 55667889999999999999888765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.13 Score=53.19 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRM-PVEADC----NVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
.+..++.+|...|++++|+..+++. ...|+. .+|.++..+|...|+.++|+..+++++++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444444444444444443 233332 12444444444455555555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.15 Score=48.76 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRM----PVEAD-CNVWGTLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~ 767 (875)
|+.-+. +.+.|++..|..-|....+.+.-.+ ....+..|+.++...|++++|...|..+ |..|. +..+.-|.-
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 3455566666666666655331111 1224445556666666666555555444 22221 233333334
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+....|+.+.|...++++++-.|+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44445555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.60 E-value=7.3 Score=45.55 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=76.9
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE 709 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 709 (875)
-..+.-.+.|-+.+|..++..-.+.--..|.+...-+.....+++|.-.|+..-+. .--+.+|...|+|.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHH
Confidence 33344445666666666665443333345555566666778888888888765331 225778889999999
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCC
Q 002834 710 GLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEAD 758 (875)
Q Consensus 710 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 758 (875)
|+.+-.++.. +-.--..+-..|+..+..+++.-||-++..+....|.
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 9998876633 1111122346788889999999999999888755553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.59 E-value=1 Score=48.98 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHH
Q 002834 659 LTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYA 731 (875)
Q Consensus 659 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 731 (875)
|...+..++. ....+.|.++++.+.+. -|+...|...-. .+...|++++|++.|+++.....--|. ...+.
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 4444444433 34567788888888874 677766655544 667788888888888865431111222 22455
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHH-hcCCh-------hHHHHHHHHHhcc
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPV-EA-DCNVWGTLLGACR-IHHEV-------ELGRVVANRLFEM 788 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~-~~~~~-------~~a~~~~~~~~~~ 788 (875)
-++.++.-.++|++|.+.+..+.. .. +...|..+.++|. ..++. ++|.+.++++-.+
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566777888888888888888752 22 3355555555554 35666 5555555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.024 Score=47.40 Aligned_cols=24 Identities=54% Similarity=1.194 Sum_probs=20.4
Q ss_pred ceeEEEeCCEEeEEecCCCCCCChHHHH
Q 002834 829 ACSWIEVERKNNAFMAGDYSHPRRDMIY 856 (875)
Q Consensus 829 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~ 856 (875)
|+||+++ |.|++||.+||+...++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~ 25 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN 25 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH
Confidence 7899987 99999999999993333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.35 Score=43.51 Aligned_cols=121 Identities=9% Similarity=0.023 Sum_probs=68.6
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~ 773 (875)
+.+.|++++|..-|..+... .+|. ...|..-+-++.+.++++.|++-..+.. +.|.. ..+..-.-+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45566777777666666552 2222 2345555566777777777776666553 44422 23333344566667
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE--IRKLMKTRD 823 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~ 823 (875)
.++.|+.-|+++++.+|..-.+--..+.+--...+..++.+ +..++++.|
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888766554444444333333333333 344444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.5 Score=43.56 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh--h-----hHHHHHHHHhhcCcHHHHHHHHHHhHHH---hCCCC
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLEL--GVNPDH--V-----VITAVLSACSHAGLVDEGLEIFRSIEKV---QGIKP 725 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~-----~~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p 725 (875)
.+-.|...|.+..++++|+-...+..+. .+..+. . ....+.-++...|....|.+..++..+. .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 4555555666666666665554443321 111111 1 1222333566667776676666665442 23333
Q ss_pred C-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHh---c--CChhHHHHHHHHHhcccCC
Q 002834 726 T-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEAD-CNVWGTLLGACRI---H--HEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 726 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~---~--~~~~~a~~~~~~~~~~~p~ 791 (875)
. .....++.++|-..|+.|.|..-|++.- .+.. ..+.......... + +.--.|.+.-++++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 3 2255667777877777777766665531 1100 0111111111111 1 1112355555555554332
Q ss_pred ----CC--ccHHHHHHHHHhcCCchhHHH
Q 002834 792 ----NI--GNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 792 ----~~--~~~~~l~~~~~~~g~~~~A~~ 814 (875)
.. ..+..++.+|..+|.-++-..
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 21 246678999988887766444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.18 Score=41.66 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCC-C---HHHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP--VEA-D---CNVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~---~~~~~~l~~~~~~~~ 773 (875)
....|+.+.|++.|.+... +-| ....|+.-..++.-+|+.++|++-+++.. .-| . ...+..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445555555555555443 222 23345555555555555555555444432 011 1 112222234456667
Q ss_pred ChhHHHHHHHHHhcccCCC
Q 002834 774 EVELGRVVANRLFEMEADN 792 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+.|..-|+.+-++..+.
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 7777777777666665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.98 Score=44.27 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=68.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHH----HHHHhhcCCChH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYAS----LVDLLARGGQIS 744 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~ 744 (875)
+|+..+|-..++++.+. ++.|...+...=.+|...|..+.-...++++.. ...|+...|.. +..++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555555555553 444445555444555555555555555555533 12344433322 223334555666
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 745 DAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 745 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
+|++.-++.. .+.|.-.-.++.......++...+.+..++--..=.+ -...|.+.+-.|.+.+.++.|++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6665555542 2223333344444445555555555544432111000 11224444445555566666666543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.44 Score=40.63 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=38.2
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 002834 721 QGIKPTPEQYASLVDLLARGGQISDAYSLVNRM----PVEADCNVWGTLLGACRI 771 (875)
Q Consensus 721 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 771 (875)
....|+.....+++.+|+..|++..|+++++.. +.+-+..+|..|+.=+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346677888888889998899999998888776 334456888888855543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.4 Score=38.73 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC-CChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG-GQISDAYSLVNRMPVEADCNVWGTLLGAC 769 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 769 (875)
...+++.|.+.+.++++.-++.++.. +...++.+... ++.+.|.+++.+. .++..|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544422 11122222222 5555555555542 2344555555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.35 Score=46.44 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 734 (875)
|+.-+. +.+.|++..|...|...++.. +-+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+--|+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 555444 446677888888888888752 211 1234457778888888888888888888877666664 5777888
Q ss_pred HHhhcCCChHHHHHHHHhCC
Q 002834 735 DLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~ 754 (875)
.+..+.|+.++|...+++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888887774
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.19 E-value=7.7 Score=40.73 Aligned_cols=151 Identities=10% Similarity=-0.039 Sum_probs=85.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH-hCCCCChhH
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP---DHVVITAVLSACSHAGLVDEGLEIFRSIEKV-QGIKPTPEQ 729 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 729 (875)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+.++|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888899999999999999999888743222 2333444456677788999999988887662 111111111
Q ss_pred HHHHHHHhhcCCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 730 YASLVDLLARGGQISDAYSL-VNRMPVEADCNVWGTLLGACRIH------HEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...++++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000012233333333333 788899999999999999998888888887
Q ss_pred HHhc
Q 002834 803 YAAD 806 (875)
Q Consensus 803 ~~~~ 806 (875)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.3 Score=39.25 Aligned_cols=91 Identities=7% Similarity=-0.068 Sum_probs=53.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG 741 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 741 (875)
...+-..|++++|..+|.-+.-. .|. ..-|..|..+|-..+.+++|+..|..+.... .-|+..+-..+.+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhC
Confidence 33445677777777777777663 332 2334444445555677777777776664411 122333444667777777
Q ss_pred ChHHHHHHHHhCCCCC
Q 002834 742 QISDAYSLVNRMPVEA 757 (875)
Q Consensus 742 ~~~~A~~~~~~~~~~p 757 (875)
+.++|+..++.....|
T Consensus 120 ~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 120 KAAKARQCFELVNERT 135 (165)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 7777777776664444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.16 E-value=8 Score=39.94 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=62.6
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCc---cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL---VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|+..|-.||.-|...|..++.++++++|..|-+ .+|...|++-....++..+..+|.+..... .. ...|..-+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~--ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LN--LDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-cc--HhHHHHHHH
Confidence 889999999999999999999999999998754 468888888888899999999999988765 44 444444444
Q ss_pred HHhc
Q 002834 362 ACAY 365 (875)
Q Consensus 362 ~~~~ 365 (875)
-..+
T Consensus 118 YIRr 121 (660)
T COG5107 118 YIRR 121 (660)
T ss_pred HHHh
Confidence 3333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.97 Score=48.30 Aligned_cols=131 Identities=12% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHcCChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH
Q 002834 666 YAMHGMGKAALKVFSDML-ELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS 744 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 744 (875)
..-.++++++.++...-. -..++ ..-...+++-+.+.|..+.|+++.+.-.. -.+...+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 344566666655554111 00111 23355566666677777777765432211 234456677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 745 DAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 745 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.|.+..++. +++..|..|...+..+||++.|+++++++-. +..|.-+|...|+-+.-.++-+....+
T Consensus 336 ~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777766654 3566777777777777777777777776533 455666677777766555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.7 Score=36.11 Aligned_cols=126 Identities=9% Similarity=0.048 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 737 (875)
....++..+...+........++.+...+ ..+...++.++..|++. +.++..+.++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34567777777888999999999998876 35666788888888765 34555555542 12333445577778
Q ss_pred hcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 738 ARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIH-HEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.+.|.++++.-++.++... ...+..+..+ ++.+.|++.+++ +.++..|..++..+
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 8888888888888887522 2222333344 788888888876 33555666555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=17 Score=41.35 Aligned_cols=116 Identities=10% Similarity=0.095 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 669 HGMGKAALKVFSDMLELG-VNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
..+.+.|..++.+..... +.+... ....+.......+..+++..+++.... ...+.......+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 345677888887764432 222222 122222222222225566666654422 11233344444555557788888
Q ss_pred HHHHHHhCCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhc
Q 002834 746 AYSLVNRMPV-EADCNVWGTLL-GACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 746 A~~~~~~~~~-~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+...+..|+. ..+..-|..-+ .+....|+.+.|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888751 11223344443 333557888888888888743
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.15 Score=49.73 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMPVEA--DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~ 776 (875)
-|.++|++++|+.+|..... +.| +..++..-..+|.+.+++..|..-++....-. -...|..-+.+-...|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45666777777776665544 445 55566666666666666666665555442111 1123334444444567888
Q ss_pred HHHHHHHHHhcccCCCCcc
Q 002834 777 LGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~ 795 (875)
+|.+-++.+++++|++...
T Consensus 183 EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhHHHHHhhCcccHHH
Confidence 9999999999999986543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.6 Score=38.75 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
+.+||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+-|...-+ -.|+...-...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 356777777777888888888888887763 332 22332223345567788888776655533 333322111111
Q ss_pred HHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-------CccHHHHHHHHHhcC
Q 002834 735 DLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-------IGNYVVMSNLYAADA 807 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 807 (875)
..-.+.-+..+|..-+.+--...|...|...+-.+.-.+=-+ +.+++++.+-..++ ..+|+.||..|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 112233355666643332222344455665543333211111 12223332222222 236889999999999
Q ss_pred CchhHHHHHHHHHh
Q 002834 808 RWDGVVEIRKLMKT 821 (875)
Q Consensus 808 ~~~~A~~~~~~~~~ 821 (875)
+.++|..++|....
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=8 Score=37.12 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=91.0
Q ss_pred HhcCCHHHHHHHhccCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhh-----
Q 002834 636 AKCGSIFSASKIFQCHPQK------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSH----- 703 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~----- 703 (875)
...|++++|.+.|+.+... ...+.-.++.++.+.+++++|+..+++....- -.|| .-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4567777777777776641 12234445666677888888888888877642 2222 223333333222
Q ss_pred --cCcHHHHHHHHHHhHHHhCCCCCh------------------hHHHHHHHHhhcCCChHHHHHHHHhCC----CCC-C
Q 002834 704 --AGLVDEGLEIFRSIEKVQGIKPTP------------------EQYASLVDLLARGGQISDAYSLVNRMP----VEA-D 758 (875)
Q Consensus 704 --~g~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~ 758 (875)
..|...+.+.+..+.+.-.--|+. .+=..+++-|.+.|.+..|..-++.|. ..+ -
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 233333444444333321122331 112345677888898888887777773 111 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...+-.+..+|...|-.++|..+.+-+-...|+++
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 25566677888899999999888776666666655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.29 E-value=4.8 Score=41.46 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCC----Ccc---HHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCcchHhcHHH
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARD----LTP---WNLMIRVYAE---NDFPNQALSLFLKLQAQGMKPDAVTIMSLLP 599 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 599 (875)
.++-+|....+++..+++++.+.... ..+ -...+-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777777777777775541 111 2234445566 8889999999988666656666666654443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.75 Score=43.88 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=82.6
Q ss_pred HHHhccCC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC------------
Q 002834 645 SKIFQCHP--QKDVVMLTAMIGGYAMH-----GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG------------ 705 (875)
Q Consensus 645 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g------------ 705 (875)
++.|..+. +.|-.+|-+++..+..+ +.++-....++.|.+.|+.-|..+|+.||..+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566655 46777888888877643 456666777889999999999999999998775532
Q ss_pred ----cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh-HHHHHHHHhCC
Q 002834 706 ----LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI-SDAYSLVNRMP 754 (875)
Q Consensus 706 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 754 (875)
+-+=++.++++|.. +|+.||.++-..+++++++.|.. .+...+.--||
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23448899999976 89999999999999999998864 34445554553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.48 Score=42.69 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA------DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
++-+-..|++++|..-|..+. ..| .++.|.+-..+..+.+..+.|+...-+++++.|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 345667899999987776653 222 2345555566677889999999999999999999988888899999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 002834 807 ARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 807 g~~~~A~~~~~~~~~~~ 823 (875)
.++++|++=+|.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999998887643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.06 E-value=3.4 Score=44.96 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-------CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
..+.+.++...+.+.-|++.-..---...+...|++++|.+.|++... -....+--+...+....+|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 344445555554444444333344445566677888888888875442 1223444566667777888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHH-HHhhcCcH-------HHHHHHHHHhHH
Q 002834 679 FSDMLELGVNPDHVVITAVLS-ACSHAGLV-------DEGLEIFRSIEK 719 (875)
Q Consensus 679 ~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~-------~~a~~~~~~~~~ 719 (875)
|..+.+.. .-+..+|..+.. ++...|+. ++|.++|.++..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88887742 334445555544 33456666 677777766643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.2 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777778888888888888877774
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.50 E-value=10 Score=36.23 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=111.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHC---CC--CCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc-----CC-CchHHH
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQ---GM--KPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC-----FD-GVRLNG 629 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~ 629 (875)
.+++.+.+.+++++.+..+.+|..- .+ .-+..+.++++.-.+.....+....+++.-...- -. ...+..
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3445555666666655555554321 11 1233445556655555555555555554433321 11 223335
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC--------C-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhh
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ--------K-------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVV 693 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 693 (875)
.|...|...|.+..-.+++.++.+ . -...|..=|..|....+-.+-..+|++...-. .-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566777777777777666665442 1 12356666778887877778788888776522 2344433
Q ss_pred HHHHHHHH-----hhcCcHHHHHHHHHHhHHHhC--CCCChh---HHHHHHHHhhcCCC----hHHHHHHHHhCCCCCCH
Q 002834 694 ITAVLSAC-----SHAGLVDEGLEIFRSIEKVQG--IKPTPE---QYASLVDLLARGGQ----ISDAYSLVNRMPVEADC 759 (875)
Q Consensus 694 ~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~~--~~p~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p~~ 759 (875)
..+++-| .+.|.+++|..-|=++-+.+. -.|... -|-.|++.+.+.|- -+||. -.+..|..
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEI 304 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEI 304 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHH
Confidence 4456655 356888887765544433232 223322 35666777777762 22221 11134555
Q ss_pred HHHHHHHHHHHhc
Q 002834 760 NVWGTLLGACRIH 772 (875)
Q Consensus 760 ~~~~~l~~~~~~~ 772 (875)
.+...+..+|+..
T Consensus 305 lAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 305 LAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHhcc
Confidence 6677888887643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.31 E-value=4 Score=36.08 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=47.0
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a 778 (875)
-.+.++.+++..++..+.- +.|... .-..-+..+.+.|+|.+|..+++++. ..|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3455667777777766644 555533 22333445566777777777777764 334444555666666544333333
Q ss_pred HHHHHHHhcccC
Q 002834 779 RVVANRLFEMEA 790 (875)
Q Consensus 779 ~~~~~~~~~~~p 790 (875)
...+..+++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 334444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.4 Score=43.72 Aligned_cols=223 Identities=13% Similarity=0.034 Sum_probs=121.7
Q ss_pred HHHcCCchHHHHHHHHHHHCC--CCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC------CchHHHHHHHHhHh
Q 002834 566 YAENDFPNQALSLFLKLQAQG--MKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD------GVRLNGALLHLYAK 637 (875)
Q Consensus 566 ~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 637 (875)
+....+.++|+..+.+-...- ...-..++..+..+.++.|..+++...--..+....+ --..+..+...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887765431 1122356777888888888877776654333332211 11222333444444
Q ss_pred cCCHHHHHHHhccCCC-C-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhc
Q 002834 638 CGSIFSASKIFQCHPQ-K-------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHA 704 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~-~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~ 704 (875)
--++.+++.+-..-.. | .-....+|..++...+.++++++.|+...+---..+ -..+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444332111 1 112233455666666777888888777665311111 23466677777777
Q ss_pred CcHHHHHHHHHHhHH---HhCCCCChhHHH-----HHHHHhhcCCChHHHHHHHHhCC----CCCCH----HHHHHHHHH
Q 002834 705 GLVDEGLEIFRSIEK---VQGIKPTPEQYA-----SLVDLLARGGQISDAYSLVNRMP----VEADC----NVWGTLLGA 768 (875)
Q Consensus 705 g~~~~a~~~~~~~~~---~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~ 768 (875)
.|+++|.-+..++.+ .++++.-...|. .|.-+|-..|++-+|.+..++.. ...|. .....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 788887776665533 133332222333 34445566677766666665542 12222 334456677
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 002834 769 CRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~ 788 (875)
|+..|+.|.|..-|+++...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77778888777777776543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=14 Score=39.08 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=79.3
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHh
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLT--PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVC 601 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 601 (875)
|....-+++..+...-.+.-.+-+..+|..-+.. .|..++.+|..+ ..++-..+++++.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve----------------- 126 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE----------------- 126 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH-----------------
Confidence 4455566677776666666666666665443322 255566665555 44445555555544
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC------CCh---hhHHHHHHHHHHcCCh
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ------KDV---VMLTAMIGGYAMHGMG 672 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~ 672 (875)
..+.+......|++.|.+ ++.+.+...|.++.. .+. ..|..++..- ..+.
T Consensus 127 ------------------~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~ 185 (711)
T COG1747 127 ------------------YDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDK 185 (711)
T ss_pred ------------------hcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccH
Confidence 333344444555555555 566666666654332 010 1333333211 2244
Q ss_pred HHHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 673 KAALKVFSDMLEL-GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 673 ~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+..+.+..+.... |..--.+.+..+..-|....++++|++++..+.+
T Consensus 186 D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 186 DFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 4555555444432 2233334444455556666666666666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.14 E-value=14 Score=37.07 Aligned_cols=20 Identities=0% Similarity=-0.268 Sum_probs=14.0
Q ss_pred HHHHhcCChhHHHHHHHHHh
Q 002834 767 GACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~ 786 (875)
..+.+.+|++.|...++-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888877544
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.27 Score=30.95 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
|..|...|...|++++|+..+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.60 E-value=23 Score=38.42 Aligned_cols=345 Identities=9% Similarity=-0.014 Sum_probs=168.8
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--CCccc-hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--RDLVS-WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
+...++.||.---...+.+.++.++..+.. |.... |-....-=.+.|..+.+.++|++-+.. ++-....|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 445566666555555556777777777664 44332 233333445678889999999988764 5555555555554
Q ss_pred HHh-ccCChhhHHHHHHHHHhc-CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHh---cc---
Q 002834 362 ACA-YLKNLKVGKEIHGYFLRH-PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFS---ES--- 433 (875)
Q Consensus 362 ~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~--- 433 (875)
-+. ..++.+..+..|...... |..--....|...+..-..++++.....+++++.+-....|+..-..|. +.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 433 457777777777776664 3333333377888888888888888888888876654444443333222 11
Q ss_pred ---CChhHHHHHHHHHHHC----CCCCChhhHHHHHHHhhcc-CchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 434 ---GYNSQFLNLLNCMLME----GIRPDSITILTIIHFCTTV-LREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 434 ---g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
...+++.++-...... ...+........+.-.... +..+....+..... ...-.++..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~--------------~~~~~~~~~ 267 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV--------------SIHEKVYQK 267 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH--------------HHHHHHHHh
Confidence 1122322222221110 0001111111111111100 00111111111110 111122333
Q ss_pred cCCHHHHHHHHHhhccCC----------CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC-cc--HHHHHHHHHHcCCc
Q 002834 506 CRNIKYAFNVFQSLLEKR----------NLVTFNPVISGYANCGSADEAFMTFSRIYARDL-TP--WNLMIRVYAENDFP 572 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~ 572 (875)
.-...+..-.|+.-.++| +..+|..-+.--.+.|+.+.+.-+|++..-+-. .+ |.-.+.-....|+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch
Confidence 334444555555555543 445677777777777777777777777643322 11 44444444444666
Q ss_pred hHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHH
Q 002834 573 NQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSAS 645 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 645 (875)
+-|-.++....+--++-.+.+-..--.-+-..|+.+.|..+++.+...-+.-..+-..-+....+.|+.+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 6666665554433222111111111112333455566666655555554223333333344444445444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.23 Score=44.08 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcch
Q 002834 151 IVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGD 230 (875)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (875)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677777888888999999999887777788999999999999888888888884433 444566677777777777
Q ss_pred HHHHHHHHH
Q 002834 231 AFRLFSWML 239 (875)
Q Consensus 231 a~~l~~~m~ 239 (875)
+.-++..+.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=6 Score=36.04 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH-----HH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT--AVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ-----YA 731 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~ 731 (875)
|..++.... .+.. +.....+++...+-....-++. .+...+...|++++|...++.... . |..+. --
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHH
Confidence 444444443 2333 5555566666542122222222 233467788999999998886654 1 22222 23
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
.|.......|.+|+|+..++....+. .+..-..-..++...|+-+.|+..|+++++.+++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45677888999999999998864211 122223334667788999999999999999886544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.54 E-value=23 Score=38.38 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=121.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV---VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS- 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 699 (875)
....|...++.-.+.|+.+...-+|++..-|-. ..|--.+.-....|+.+-|..++....+-- .|+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 445666777777888999999999988765422 345555555555588888887777766643 233222222222
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHH---HHHHhCC-CCCCHHHHHH----HHHH-H
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAY---SLVNRMP-VEADCNVWGT----LLGA-C 769 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~ 769 (875)
-+-..|+.+.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++.... ...+..+... +... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 345678999999999999884 3 6643 3334456677888888888 5555442 2223222222 2222 3
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
...++.+.|..++.++++..|++-..|..+.++....+-
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 456899999999999999999999999999888777763
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=12 Score=35.48 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCC------CcccHHHHHHHhhcCCChHHHHHH
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEKR------NLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
+-..|-.|....++..|.+.++.-.+.| +..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4555666667778888888887744432 555667777776 34455544444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=30 Score=39.19 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=17.5
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcC
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMK 313 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 313 (875)
+...-+.|+.+|.+.++.+.-.++.+...
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 34444566777777777666665555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.24 Score=31.14 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
|..||++|.+.|+|++|+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999988774
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=17 Score=36.34 Aligned_cols=236 Identities=12% Similarity=0.035 Sum_probs=116.6
Q ss_pred CCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCCh----hHHHHHHHHhHhcCCCCCCcchHHH
Q 002834 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDD----ARVMNLFYNMHVRDQPKPNSVTVAI 151 (875)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~~ 151 (875)
++..+....+.++.+.|..+....+..-+..+|+..=...+.++++-| +. .+++..+..+.... ++...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~D---~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLG-MAKRCQDNVFNILNNLALED---KSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcC---CCHHHHHH
Confidence 344444555555555554333333333233445554445555555555 42 35666666653332 44444445
Q ss_pred HHHHhhccCCcch--hhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCC-Cc
Q 002834 152 VLSACARLGGIFA--GKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENK-VL 228 (875)
Q Consensus 152 ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 228 (875)
.+.+++..+.... .....+.+...-..++..+--..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ..
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 5555544332111 11222323222234455566666666766666443333333333444433333344444332 12
Q ss_pred chHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHH
Q 002834 229 GDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELL 308 (875)
Q Consensus 229 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (875)
..+...+..+... + +..+....+.++.+.|+....-.+
T Consensus 191 ~~~~~~L~~~L~D---~---------------------------------------~~~VR~~A~~aLg~~~~~~av~~L 228 (280)
T PRK09687 191 PDIREAFVAMLQD---K---------------------------------------NEEIRIEAIIGLALRKDKRVLSVL 228 (280)
T ss_pred HHHHHHHHHHhcC---C---------------------------------------ChHHHHHHHHHHHccCChhHHHHH
Confidence 3344444444321 1 555566666666666664433334
Q ss_pred hhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 002834 309 FRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPAC 363 (875)
Q Consensus 309 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 363 (875)
.+.+..++ ..-..+.++...|.. +|+..+..+.... ||...-...+.+|
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~ 277 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKL 277 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHH
Confidence 44444433 234567777888875 6888888887654 5766655555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.07 E-value=32 Score=38.99 Aligned_cols=116 Identities=12% Similarity=0.045 Sum_probs=64.5
Q ss_pred hHHHHhHhcCChhHHHHHhhhcCCCCccchHHHH----HHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 002834 291 ALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAII----AGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366 (875)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~ 366 (875)
.-+....+..-++.|..+-+.-..+ ..+...+. .-+.+.|++++|...|-+-... +.|.. ++.-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhcCH
Confidence 3445556666666666665544322 22222222 3345678888888888665433 33332 33334444
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC
Q 002834 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC 416 (875)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 416 (875)
..+..--..++.+.+.|+...+ --..|+.+|.+.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4444445555666666665444 23567777777777777666655543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=11 Score=33.57 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHH--HHHHhhcCCC
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYAS--LVDLLARGGQ 742 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~ 742 (875)
+++.+..++|+.-|.++.+.|...-.+. ...........|+...|...|+++-.+..++.-..-... -..++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 5678899999999999998876543322 222233567889999999999999774333221112222 2345678999
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 743 ISDAYSLVNRMPVEAD---CNVWGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+++....++.+..+.+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999998888853333 35556777777899999999999999877
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.78 E-value=5.2 Score=42.87 Aligned_cols=161 Identities=7% Similarity=-0.012 Sum_probs=94.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCCh
Q 002834 326 GYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDM 405 (875)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 405 (875)
...-.++++++.+..+.-.-...+ | ..-...++.-+.+.|-.+.|.++-. |+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP----DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H----HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch----HHHhHHHHhcCCH
Confidence 344567777766665411100002 2 3335566666666676666666532 11 2334556678888
Q ss_pred hHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhc
Q 002834 406 EAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTG 485 (875)
Q Consensus 406 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 485 (875)
+.|.++.+++. +...|..|......+|+.+-|.+.|.+..+ |..++-.+.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888877655 566899999999999999999998887543 4555556666777777777777777665
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 486 LLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 486 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
- ++....++.-.|+.++..+++.+-..
T Consensus 404 ~---------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 404 D---------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ----------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred C---------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 35555566667777777777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.77 E-value=7.7 Score=34.46 Aligned_cols=122 Identities=17% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
.+.+..++|+.-|..+.+.|... |-.|- ...........|+...|..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~----YpvLA-----------------------------~mr~at~~a~kgdta~AV~ 115 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS----YPVLA-----------------------------RMRAATLLAQKGDTAAAVA 115 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc----chHHH-----------------------------HHHHHHHHhhcccHHHHHH
Confidence 66777888888888887765432 11111 1223344566788888888
Q ss_pred HhccCCCC--ChhhH-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 647 IFQCHPQK--DVVML-----TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 647 ~~~~~~~~--~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.|+++... -+... ---...+..+|-+++.....+.+-..+-+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 116 aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 116 AFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88876641 11111 111233556788888888777776554333333444555577788899999988888876
Q ss_pred Hh
Q 002834 720 VQ 721 (875)
Q Consensus 720 ~~ 721 (875)
+.
T Consensus 196 Da 197 (221)
T COG4649 196 DA 197 (221)
T ss_pred cc
Confidence 43
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.35 E-value=21 Score=39.88 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=26.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV 656 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 656 (875)
+..+...|+..|...+++..|.+++-...++++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 445566788999999999999999888876554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.31 E-value=35 Score=38.27 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHH-----hhcCCChHHHHHHHHhhhc-------CC-CccHHHHHHHHHHcC-----
Q 002834 509 IKYAFNVFQSLLEKRNLVTFNPVISG-----YANCGSADEAFMTFSRIYA-------RD-LTPWNLMIRVYAEND----- 570 (875)
Q Consensus 509 ~~~A~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~-~~~~~~l~~~~~~~~----- 570 (875)
...|.+.++......+...-..+... +....+++.|...|+.+.+ .+ +.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 45677777776665454444333332 4455677777777766644 22 223555555555543
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh-cCCHHHHHHHhc
Q 002834 571 FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK-CGSIFSASKIFQ 649 (875)
Q Consensus 571 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 649 (875)
+.+.|+.++....+.| .|+...+ -..+..... -.+...|.++|.
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~----------------------------------lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYL----------------------------------LGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHH----------------------------------HHHHHHcCCccccHHHHHHHHH
Confidence 3344555555555544 2332222 111111111 123455555555
Q ss_pred cCCC-CChhhHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 650 CHPQ-KDVVMLTAMIGGYA----MHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 650 ~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
...+ -.+.++-.+..+|. ...+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+ .+.+
T Consensus 353 ~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~ 429 (552)
T KOG1550|consen 353 LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYE 429 (552)
T ss_pred HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhh
Confidence 5443 22333322332222 2235677888888887776 3332222233333444 566666555555544 2322
Q ss_pred CChhHHHHHHHHh-----hc--CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhcccCCCC
Q 002834 725 PTPEQYASLVDLL-----AR--GGQISDAYSLVNRMPVEADCNVWGTLLGACRIH----HEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 725 p~~~~~~~l~~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~ 793 (875)
-....-..+.+.. .+ ..+.+.+...+.+....-+......|...+... .+.+.|...+.++-+.. +
T Consensus 430 ~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~ 506 (552)
T KOG1550|consen 430 VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A 506 (552)
T ss_pred HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h
Confidence 2111111111111 11 224556666666665555555555555544332 36778887777777665 6
Q ss_pred ccHHHHHHHHHhc-C--CchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAAD-A--RWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 821 (875)
.....|+++|-.- | ++..|.+.+....+
T Consensus 507 ~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 507 QALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 6677777776552 1 15666666655544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.28 E-value=13 Score=33.49 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
+..++..+...|++-+|.++.+.....+..+...++.+-.+.++...-..+|+-..+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444455555555555555555544444444444555545555555555555544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=22 Score=35.62 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=43.9
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCH----HHHHHHHHHHHHcCCCCCChhhHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEW----LKALNLFCELITKEMIWPDSVTLVSLL 360 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~pd~~t~~~ll 360 (875)
|..+....+..+...|..+....+..-+..+|...-...+.++.+.|+. .+++..+..+.... ||...-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 5556666666666666544444444433445555555566666666653 45666676664433 5555555555
Q ss_pred HHHhcc
Q 002834 361 PACAYL 366 (875)
Q Consensus 361 ~~~~~~ 366 (875)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 555444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.3 Score=30.68 Aligned_cols=34 Identities=26% Similarity=0.146 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.+.-++.+.|+++.|.+..+.+++.+|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556778999999999999999999999866543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.42 E-value=19 Score=35.18 Aligned_cols=54 Identities=6% Similarity=-0.126 Sum_probs=49.2
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..|...|.+..|.++.++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 567889999999999999999999999999999999999999888888776665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.3 Score=40.83 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=88.0
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHH----HHHHhcCCh
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLL----GACRIHHEV 775 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~----~~~~~~~~~ 775 (875)
...|+.-+|...++++.++ .+.|...+..-=+++.-.|+.+.-...++++. . .||.+.+..+- -+....|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888875 44555566666677778888888888888873 2 55654444333 233467999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+.|++.++++++++|.|.=+.-..+.++..+|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999988888999999999999999996543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.10 E-value=20 Score=33.76 Aligned_cols=91 Identities=8% Similarity=0.115 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHhHHHhCCCCC-hh---HHHHHHHHhhcCCChHHHHHHHHhCC---CCCCHHHHH-----HHHHHHHhc
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPT-PE---QYASLVDLLARGGQISDAYSLVNRMP---VEADCNVWG-----TLLGACRIH 772 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~-----~l~~~~~~~ 772 (875)
.++++|+..|+..-+-+..... .. ++.-+...-...|++.+|++++++.. ...+..-|. .-.+.|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4677777777777664433322 22 33333344456788999999998874 222222222 223556655
Q ss_pred -CChhHHHHHHHHHhcccCCCCcc
Q 002834 773 -HEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 773 -~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.|.-.+..++++-.+++|.....
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 78888899999999999986554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.2 Score=37.63 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=26.4
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++.+.++.++.-+--+.|+.+..-..-++++...|+|.+|+.+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555555433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.84 E-value=25 Score=34.57 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC
Q 002834 603 QMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ 653 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (875)
..++...+...++.+......+..+.-.++.+|...|+.+.|..++..++.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344555555555555555555555566677777778888888888877764
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.80 E-value=20 Score=33.78 Aligned_cols=95 Identities=7% Similarity=0.034 Sum_probs=42.5
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC----CCCChhHHHHHHHHhhcC-CChHHHHHHHHhCC--CC---CCHHHHHHHH---H
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG----IKPTPEQYASLVDLLARG-GQISDAYSLVNRMP--VE---ADCNVWGTLL---G 767 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~---p~~~~~~~l~---~ 767 (875)
|.+.+++++|...++...+.+. +.--..++-.+.+.|-.. .+++.|+..+++.. .. .+...-..++ .
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 4444566666666655443211 111122333444555433 45555555555542 11 1111111222 1
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.....+++.+|+.+|++...-.-+|+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 1223456666666666666665555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.77 E-value=46 Score=37.46 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHH
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQF 439 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 439 (875)
++..+|+.+...|++++|-+..-.|...+..-|.-.+..+...++....
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 6677788888888888888888877777777777766666666655443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.60 E-value=23 Score=33.70 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=14.0
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHhh
Q 002834 526 VTFNPVISGYANCGSADEAFMTFSRI 551 (875)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 551 (875)
..|.....+|...+++++|...+.+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34555555665555555555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.50 E-value=24 Score=33.86 Aligned_cols=231 Identities=13% Similarity=0.083 Sum_probs=133.9
Q ss_pred cCChhHHHHHhhhcCC--CCc-----cchHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCC--CChhhHHHHHHHHhcc
Q 002834 299 FGRTEEAELLFRRMKS--RDL-----VSWNAIIAGYASNDEWLKALNLFCELITK---EMIW--PDSVTLVSLLPACAYL 366 (875)
Q Consensus 299 ~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~--pd~~t~~~ll~~~~~~ 366 (875)
...+++|+.-|....+ +.- .+.-.+|....+.+++++.+..|.+|..- . +. -+..+.++++.-.+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhh
Confidence 3467888888877653 222 23455788889999999999998887542 1 21 3455677888877777
Q ss_pred CChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhcCCChhHHHHHHHhcCC---C-----C-------cchHHHHH
Q 002834 367 KNLKVGKEIHGYFLRHPYLEED----AAVGNALVSFYAKCSDMEAAYRTFLMICR---R-----D-------LISWNSML 427 (875)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~-----~-------~~~~~~li 427 (875)
.+.+....+++.-++.--...+ ..+-..|...|...|.+....++++++.. . | ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 7777777666654332111110 11235677778888888888887777622 1 1 23577777
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc-----cCchhhHH-HHHHHHHHhcCCCCCCch--hHHHHH
Q 002834 428 DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT-----VLREGMVK-ETHGYLIKTGLLLGDTEH--NIGNAI 499 (875)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~~~~~~a~-~~~~~~~~~~~~~~~~~~--~~~~~l 499 (875)
..|..+.+-.+...+|++.+.............+|+-|.. .|.++.|. .+|+.+......+++... .-|-.|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888877654333333344456666643 35555544 344444433321112221 124455
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-----CCcccHHHHHHHh
Q 002834 500 LDAYAKCRNIKYAFNVFQSLLEK-----RNLVTFNPVISGY 535 (875)
Q Consensus 500 i~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~ 535 (875)
.+++.++|- .-|+.-..+ |.+.+.+.++.+|
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aY 314 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAY 314 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHH
Confidence 566655541 111111112 4556777777777
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.23 Score=44.02 Aligned_cols=128 Identities=11% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhH
Q 002834 49 VLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDAR 128 (875)
Q Consensus 49 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 128 (875)
+++.+...+........++.+...+...+....+.++..|++.++.+...++++.... .....++..+-+.+ .+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~-l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG-LYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT-SHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc-hHHH
Confidence 4556666666777777777777666666788888888899888888888888874332 34445666666667 7777
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCC
Q 002834 129 VMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGL 196 (875)
Q Consensus 129 a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 196 (875)
+.-+|.++.... ..+..+...++++.|.+.... .++..+|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~----------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHD----------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHT----------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHH----------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 777777654332 001112334455555543322 3445666666666655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.45 E-value=6.1 Score=41.61 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=74.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 002834 668 MHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAY 747 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 747 (875)
+..+.+.-++.-.+..+ +.||-.+-..++ +--.+.-+.++.+++++..+. + ...+..- ......|..-+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~~e-- 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHFWE-- 248 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccchhh--
Confidence 33455555566666665 456654433332 233445677888888777652 1 0000000 00001111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 748 SLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 748 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+..-...|-..+-..|..++++.|+.++|++.++.+++..|. +-..+..|...+-..+++.++..++.+=-
T Consensus 249 -~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 -AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred -hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111112222333445666667778888888888888777664 34466677777788888888888776643
|
The molecular function of this protein is uncertain. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.08 E-value=2.3 Score=36.75 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
..+.+.++.++..+--+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666667666666777777777777777777777777777776665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.96 E-value=3.5 Score=39.59 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHhcc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----------
Q 002834 408 AYRTFLMIC--RRDLISWNSMLDAFSES-----GYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL----------- 469 (875)
Q Consensus 408 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 469 (875)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355566665 56777888888777543 556666777888999999999999999998764432
Q ss_pred -----chhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 470 -----REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 470 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
.-+-+.+++++|...|+ .|+..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGV---mPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGV---MPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCC---CCchHHHHHHHHHhcccc
Confidence 12335555666666666 666666666666665554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.8 Score=28.72 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+|..+...|...|++++|+++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355556666666666666666666665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.29 E-value=2.5 Score=38.85 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=56.2
Q ss_pred hcCCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchh
Q 002834 738 ARGGQISDAYSLVNRMPVEA--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 811 (875)
.+.|+ ++|...|-++...| +......-+..+....|.++++..+-+++++.+. ||..+..|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44455 66777776665333 3344555566677789999999999999998654 47788999999999999998
Q ss_pred HH
Q 002834 812 VV 813 (875)
Q Consensus 812 A~ 813 (875)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.06 E-value=62 Score=36.99 Aligned_cols=164 Identities=8% Similarity=0.018 Sum_probs=78.4
Q ss_pred chHHHHHHHHh-hcCChhhHHHHHHHHhhcCCCCCCCh--hh-HHHHHHHhcccCchHHHHHHHHHHHHhc----CCCCc
Q 002834 7 KSWITIINGFC-RDGLHKEALSLFAHELQSSPSVRHNH--QL-FSAVLKSCTSLADILLGKALHGYVTKLG----HISCQ 78 (875)
Q Consensus 7 ~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 78 (875)
.++-.+...+. .+.++++|...+.+............ .. -..+++.+.+.+... |....+..++.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34555555555 77777888877777765432111111 11 112334444444333 666666655431 22223
Q ss_pred hhhhHH-HHHHHccCCchHHHHhhccCCC-------CCchhHHHHHHHHh--cCCCChhHHHHHHHHhHhcCC-C-----
Q 002834 79 AVSKAL-LNLYAKCGVIDDCYKLFGQVDN-------TDPVTWNILLSGFA--CSHVDDARVMNLFYNMHVRDQ-P----- 142 (875)
Q Consensus 79 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~~~~~~~a~~~~~~m~~~~~-~----- 142 (875)
..+.-+ +..+...+++..|...++.+.. |.+..+-.++.+.. +.+ .++++++.++++..... +
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCC
Confidence 333333 2233233677777777765521 22233333333322 334 56667777766633220 1
Q ss_pred --CCCcchHHHHHHHhh--ccCCcchhhhHHHHH
Q 002834 143 --KPNSVTVAIVLSACA--RLGGIFAGKSLHAYV 172 (875)
Q Consensus 143 --~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 172 (875)
.|-..+|..++..|+ ..|++..+.+.+..+
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223456666666665 345555555544443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.5 Score=26.85 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.58 E-value=0.72 Score=28.30 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..+|.+|...|++++|++.+++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578899999999999999998777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.1 Score=43.93 Aligned_cols=81 Identities=6% Similarity=-0.103 Sum_probs=62.2
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
++-|-++|+++||++.|.... ..| +++.+.+-..+|.+.+.+..|+.-...++.++..-..+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 456889999999999997764 667 888888999999999999999999999999876655555554444445555555
Q ss_pred HHH
Q 002834 812 VVE 814 (875)
Q Consensus 812 A~~ 814 (875)
|.+
T Consensus 184 AKk 186 (536)
T KOG4648|consen 184 AKK 186 (536)
T ss_pred HHH
Confidence 544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.46 E-value=15 Score=34.10 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 734 (875)
.+.-++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++-+.+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 4455677888889999999988877752 44455566778889999999999988876654 4554 44666666
Q ss_pred HHhhcCCChHHHH-HHHHh--CC-CCC-CHHHHHHHH-HHHH--hcCChhHHHHHHHHHhcccCCCCccHH--HHHHHHH
Q 002834 735 DLLARGGQISDAY-SLVNR--MP-VEA-DCNVWGTLL-GACR--IHHEVELGRVVANRLFEMEADNIGNYV--VMSNLYA 804 (875)
Q Consensus 735 ~~~~~~g~~~~A~-~~~~~--~~-~~p-~~~~~~~l~-~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~ 804 (875)
++ +.+. ++|.. .| +.- ....|...+ .+.. ..|.-+.+...-+++++..|..++... ..+|+--
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawiaD 152 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIAD 152 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhhh
Confidence 54 2222 22221 12 111 234565444 3333 334566677888888998887665422 2445544
Q ss_pred hcCCchhHHH
Q 002834 805 ADARWDGVVE 814 (875)
Q Consensus 805 ~~g~~~~A~~ 814 (875)
..++..-+++
T Consensus 153 sD~RlgpvlE 162 (273)
T COG4455 153 SDDRLGPVLE 162 (273)
T ss_pred cccccCcceE
Confidence 4555544444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.41 E-value=8.5 Score=35.34 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444455555555555555544433333322 23444444445555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.32 E-value=0.93 Score=25.89 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHH
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999998764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.28 E-value=7.3 Score=33.02 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHhhcCCChH---HHHHHHHhCC--CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 724 KPTPEQYASLVDLLARGGQIS---DAYSLVNRMP--VEADC--NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
.++..+--.+..++.+..+.+ +.+.++++.- ..|+. .....|.-++.+.|+++++.+....+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 555566666777777666543 3445555542 23322 33444555566777777777777777777776543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.22 E-value=23 Score=37.11 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...+|..+...|+++|+++.|..++.++...++. .|...+..+.++...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4477999999999999999999999999987632 466777789999999999999998777665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.09 E-value=7.2 Score=38.39 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQYASL 733 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 733 (875)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ +.|+.|........
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777642 44566677777777777777777777766654 24566655554443
Q ss_pred HH
Q 002834 734 VD 735 (875)
Q Consensus 734 ~~ 735 (875)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.00 E-value=9.9 Score=34.91 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=45.7
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQKD------VVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
...+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+...+.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566788888899999999999888877632 24566777777888888888888777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=4.2 Score=40.07 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeE
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNA 841 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 841 (875)
.+++-.++...++++.|.++.+.++.+.|++|.-+---|-+|++.|.+..|..=++...++. |
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----P------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----C-------------
Confidence 45666788899999999999999999999999888889999999999999999666544321 1
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHH
Q 002834 842 FMAGDYSHPRRDMIYWVLSILDEQI 866 (875)
Q Consensus 842 f~~~~~~~~~~~~~~~~~~~l~~~~ 866 (875)
.-|.+..|...++.|..+.
T Consensus 247 ------~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CchhHHHHHHHHHHHhhcC
Confidence 2466677777777765543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.91 E-value=26 Score=31.55 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhc
Q 002834 171 YVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 171 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (875)
.+.+.++.|+...+..+|+.+.+.|.+.....++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34445566666666666666666665544444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.59 E-value=53 Score=35.00 Aligned_cols=159 Identities=11% Similarity=0.128 Sum_probs=82.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG 705 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 705 (875)
..++++.++..-+..-.+.+..++.. .+-..|..++.+|..+ ..++-..+|+++.+. .-|.+.+...+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHh
Confidence 33444455444444444444444433 3445566777777776 556667777777663 444555555555455557
Q ss_pred cHHHHHHHHHHhHHHhCCCCC------hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCh
Q 002834 706 LVDEGLEIFRSIEKVQGIKPT------PEQYASLVDLLARGGQISDAYSLVNRMP----VEADCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~ 775 (875)
+.+.+..+|.++... +-|. .+.|.-+.... ..+.+....+..++. ..--.+.+..+-.-|....|+
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 777777777776542 2331 12344333321 234444455544442 111223333333445555677
Q ss_pred hHHHHHHHHHhcccCCCC
Q 002834 776 ELGRVVANRLFEMEADNI 793 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~ 793 (875)
+.|+++.+.+++.+.+|.
T Consensus 222 ~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 222 TEAIRILKHILEHDEKDV 239 (711)
T ss_pred HHHHHHHHHHhhhcchhh
Confidence 777777777666665543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.90 E-value=1.7 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
|..+...+...++++.|+..++++++.+|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666666665553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.86 E-value=3.4 Score=40.57 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
.++..++..+...|+.+.+...+++.. ..| +...|..++.+|...|+...|+..|+++-.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 466667777777777777777777763 344 6677777777777777777777777776654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.9 Score=40.33 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=51.9
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRM-PVEADCNVWGTLLGACR-IHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~ 776 (875)
.|.....++.|...+.+... +.|+.. .|..-+.++.+..+|+.+..-.... .+.||..--..+++.+. ....++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45555666777776665544 666653 4555666666677777666554444 36666655555555543 345677
Q ss_pred HHHHHHHHHhcc
Q 002834 777 LGRVVANRLFEM 788 (875)
Q Consensus 777 ~a~~~~~~~~~~ 788 (875)
.|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.79 E-value=23 Score=30.02 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
....+..+...|+-++-.+++..+.+. -+|++.....+..||.+.|+..++.+++.++.+ .|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 445566777888888888888887753 477777888888888888988888888888877 454
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.37 E-value=7.8 Score=38.01 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=68.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC-CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KD--------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
.......++..-....+++++...+-+++. |+ ..+| ++.+. .=++++++.++..=++.|+-||.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 444445555555666778888877776654 22 2233 23222 33788999999999999999999999
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+.++..+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998887765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.05 E-value=1.8 Score=26.17 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..+|++|...|++++|.+.++.+.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.68 E-value=21 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACR 770 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 770 (875)
.++.+++..+++.|.- +.|+.. .-..-+..+...|+|+||..++++....+ ....-..|+..|.
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 5666666666666643 445432 22223344556667777777766665332 3333344444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.62 E-value=51 Score=33.07 Aligned_cols=18 Identities=6% Similarity=-0.184 Sum_probs=11.9
Q ss_pred HHHHcCChHHHHHHHHHH
Q 002834 665 GYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m 682 (875)
.+.+.++++.|.++|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 344567788888777643
|
It is also involved in sporulation []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.52 E-value=92 Score=35.91 Aligned_cols=199 Identities=13% Similarity=0.041 Sum_probs=106.9
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCC----CCCh-------hhHHHHHHHH-HHcCChHHHHHHHHHHHHC----CC
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHP----QKDV-------VMLTAMIGGY-AMHGMGKAALKVFSDMLEL----GV 687 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~ 687 (875)
++...-.-+.......++.+|..++.+.. .|+. ..|+.+-... ...|++++|+++.+..... -.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33444444455566777888777776533 2221 2455554333 3567888888888877664 11
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHH-----HHHhhcCCC--hHHHHHHHHhC-----CC
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASL-----VDLLARGGQ--ISDAYSLVNRM-----PV 755 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~--~~~A~~~~~~~-----~~ 755 (875)
.+..+.+..+..+..-.|++++|..+.++..+. .-.-+..++..+ ...+..+|. +.+....+... ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 222344455555777788999998888777653 122233333322 244566773 22222222222 12
Q ss_pred CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccc----CCCCc---cHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 756 EADC-NVWGTLLGACRIHHEVELGRVVANRLFEME----ADNIG---NYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 756 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.|-. ......+..++.+-+.+.+...+.+.++.. |..-. .+..|+.++...|+.++|......+....
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2321 122222223333333566665555555543 33221 22367888999999999998877776543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.20 E-value=6.6 Score=27.29 Aligned_cols=50 Identities=4% Similarity=0.013 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVT 871 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 871 (875)
+..++-.+.+.|++++|.+..+.+.+ .+|...+.....+.+..+|.++|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999998777654 247777777788888889988884
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.06 E-value=1.7 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 617 VIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
+++..|.+...+..+...|...|++++|
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3334444444444444444444444444
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.99 E-value=64 Score=33.71 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=109.5
Q ss_pred cCCHHHHHHHhccCCC----CChhhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHhhcCcHH
Q 002834 638 CGSIFSASKIFQCHPQ----KDVVMLTAMIGGYA-MHGMGKAALKVFSDMLELGVNPDHV----VITAVLSACSHAGLVD 708 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~ 708 (875)
.|+.++|.+.+..+.. +....|-.|+.+-. ...+..+|+++|++..- .-|-.. ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999988765 34556777776644 45689999999999876 345432 2333444567889999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHH-HHHHHhhcC---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYA-SLVDLLARG---GQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
++..+-.+-.+.|...|=...|. .++..+.+. -+.+.-..++..|.-.-...+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777676666544333 233333333 23444445566653222346777777888889999999999999
Q ss_pred HhcccCCCCccHHHHHHHHHh
Q 002834 785 LFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 785 ~~~~~p~~~~~~~~l~~~~~~ 805 (875)
+..+.+. ...-...+.+|..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRG 302 (421)
T ss_pred HHHhccC-CCcchHHHHHHHH
Confidence 9999744 3333344455544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.85 E-value=59 Score=36.52 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=40.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc-CCchhHHHHH
Q 002834 742 QISDAYSLVNRMPVEADCNVWGTLLGACR----IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD-ARWDGVVEIR 816 (875)
Q Consensus 742 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 816 (875)
+...|.+++..............+...+. ...+.+.|...++++.+.+ ++.+...++..|.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 44566666666543333322222222221 1236667777777776666 334344444433332 6666666655
Q ss_pred HHHHhCCC
Q 002834 817 KLMKTRDL 824 (875)
Q Consensus 817 ~~~~~~~~ 824 (875)
..+++.|.
T Consensus 421 ~~~a~~g~ 428 (552)
T KOG1550|consen 421 LYLAELGY 428 (552)
T ss_pred HHHHHhhh
Confidence 55555443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.57 E-value=1.4 Score=26.75 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+-.+..++...|+.+.|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566777889999999999998763
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.2 Score=44.48 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=45.2
Q ss_pred hhcCCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 737 LARGGQISDAYSLVNRMP-VEADCNVW-GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
+...+.++.|..++.++. .+|+...+ ..-..++.+.+++..|..-+-++++++|.....|+.-|..+.+.+++.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 334455555555555543 45544322 2222444555666666666666666666666666666666666666666666
Q ss_pred HHHHH
Q 002834 815 IRKLM 819 (875)
Q Consensus 815 ~~~~~ 819 (875)
.++..
T Consensus 94 ~l~~~ 98 (476)
T KOG0376|consen 94 DLEKV 98 (476)
T ss_pred HHHHh
Confidence 55443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.16 E-value=4.7 Score=42.98 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh--hHHHHHHHHhhcCCChHHHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP--EQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
-+-.++.-|.. .+-|-...++...--....|+...|...+..+.- ..|.. .....|.+.+.+.|...+|-.++.
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 34444444432 2334333333222233457899999999987744 55542 356678888888999899998887
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 752 RMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 752 ~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
+.. ....+.+...+.+++....|++.|++.++++++++|+++..-..|-.+
T Consensus 667 q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 667 QALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 763 333456677788888899999999999999999999999876655444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.13 E-value=2.3 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578899999999999999998877543
|
... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.2e+02 Score=34.85 Aligned_cols=396 Identities=8% Similarity=-0.101 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
.-...+..+.+.+++....+ |..-...+...-.....+....|+.++|....+.+-..|. .....+..++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 44555556666777777777 3322234555556677788888888888777777655552 234445555555443332
Q ss_pred hhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 471 EGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
. +....-.-+......|+...|..+...+... .......++..+. +...+...+..
T Consensus 179 l--------------------t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~-~~~~a~a~~al~~---~p~~~~~~~~~ 234 (644)
T PRK11619 179 Q--------------------DPLAYLERIRLAMKAGNTGLVTYLAKQLPAD-YQTIASALIKLQN---DPNTVETFART 234 (644)
T ss_pred C--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHhcChh-HHHHHHHHHHHHH---CHHHHHHHhhc
Confidence 2 2212222334444556666666666555221 1112222333222 22222222222
Q ss_pred hhcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCcch--HhcHHHHhhcccchHHHHHHHHHHHHhcCCCc
Q 002834 551 IYARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQG-MKPDAVT--IMSLLPVCSQMASVHLLRQCHGYVIRACFDGV 625 (875)
Q Consensus 551 ~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 625 (875)
.. ++... +..+.-.-....+.+.|..++....... ..+.... ...+.......+..+.+...++...... .+.
T Consensus 235 ~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~ 312 (644)
T PRK11619 235 TG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QST 312 (644)
T ss_pred cC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCc
Confidence 11 11111 1111111223455677888887764432 2222111 1111111111100222222222221111 133
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS 702 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 702 (875)
.+...-+....+.++.+.+...+..++. . ...-..=+..++...|+.++|...|+++.. . .+|..++.+-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~- 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ- 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-
Confidence 3344444555577777777777777654 1 112222355665667888888888777632 1 2344443321
Q ss_pred hcCcHHH-HHHHHH-HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDE-GLEIFR-SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~-a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
+.|..-. ...... .... ..-. .-..-+..+...|+..+|...+..+....+......+.......|..+.++.
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~-~~~~----~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSA-LTQG----PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred HcCCCCCCCCCCCCchhhh-hccC----hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1121100 000000 0000 0000 1122345667789999999888776544555555666666678889899888
Q ss_pred HHHHHhccc---CCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcC
Q 002834 781 VANRLFEME---ADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKK 826 (875)
Q Consensus 781 ~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 826 (875)
+..+....+ -..|..|.-...-+...-..+.+.-.-=..+|.+..+
T Consensus 461 ~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 461 ATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 876553321 1234445555555555556666654322223555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.11 E-value=11 Score=40.61 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=86.9
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHh
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 717 (875)
.|+++.|..++..++++. .+.++.-+-+.|..++|+++- ..||. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 566777766666665322 344555556666666665432 12222 11 2234677788877766544
Q ss_pred HHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 718 EKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 718 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
. +..-|..|.++...+|++..|.+.+.... -|..|+-.+...|+-+.-..+...+-+....|..
T Consensus 664 ~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A--- 727 (794)
T KOG0276|consen 664 N-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA--- 727 (794)
T ss_pred c-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH---
Confidence 2 24467788888888888888888777653 3555666666666666544444444333333322
Q ss_pred HHHHHHHhcCCchhHHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~ 818 (875)
-..|...|++++.++++-.
T Consensus 728 --F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 --FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHcCCHHHHHHHHHh
Confidence 2356777888888887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 9e-12
Identities = 83/597 (13%), Positives = 159/597 (26%), Gaps = 175/597 (29%)
Query: 177 LERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDK--DVVSWNAVISGLSENKVLGDAFRL 234
+ + L + + + V +F ++ K ++V V L N
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRIN--------- 90
Query: 235 FSWML----TEPIKP-----NYATILNILPICASLDEDVGYFFGREIHCYVLRRA--EL- 282
+ +++ TE +P Y + + Y R LR+A EL
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 283 -IADVSVC-------NALVS----------------FYLRFGRTEEAELLFRRMKS---- 314
+V + + F+L E + ++
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 315 --RDLVSWNAIIAGYASNDEWLKA--LNLFCE-------LITKEMIWPDSVTLVSLLPAC 363
+ S + + ++A L L+ + ++ + +C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQ-NAKAWNAFNLSC 266
Query: 364 AYL---KNLKVGKEIHGYFLRHPYLEEDAAV---GNALVSFYAKCSDM-------EAAYR 410
L + +V + H L+ + S K D E
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTT 325
Query: 411 TFLMI------CRRDLISWN----SMLDAFSESGYNSQFLNLLNCMLME------GIRPD 454
+ R L +W+ D + LN+L + P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 455 SITI----LTII-HFCTTVLREGMVKETHGYLIKTGLLLGDTE------HNIGNAILDAY 503
S I L++I +V + L K L+ + +I L+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSI---YLELK 436
Query: 504 AKCRNIKYAFNVFQSLLEKRNLV-------TFNPVISGY---------ANCGSADEAFMT 547
K N +YA + +S+++ N+ P + Y N +
Sbjct: 437 VKLEN-EYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTL 492
Query: 548 FSRIYARDLTPWNLMIRVYAENDFPNQALSLFL--KLQAQGMKPDAVTIMSLLPVCSQMA 605
F ++ DF FL K++ +A S+L Q
Sbjct: 493 FRMVFL----------------DFR------FLEQKIRHDSTAWNASG--SILNTLQQ-- 526
Query: 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAM 662
L+ Y+ RL A+L K C D++ + M
Sbjct: 527 ----LKFYKPYICDNDPKYERLVNAILDFLPKIEE------NLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 78/506 (15%), Positives = 148/506 (29%), Gaps = 159/506 (31%)
Query: 9 WITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGY 68
W+ + N + + + L +++ + + R +H S L ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDH-----------SSNIKLRIHSIQAE 233
Query: 69 VTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWN-------IL------ 115
+ +L + + LL V+ + + WN IL
Sbjct: 234 LRRL--LKSKPYENCLL-------VLLNVQ---------NAKAWNAFNLSCKILLTTRFK 275
Query: 116 -----LSGFACSHV---------DDARVMNLF---YNMHVRDQPKPNSVTVAIVLSACAR 158
LS +H+ V +L + +D P+ T LS A
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 159 LGGIFAGKSLHAYVIKFGLER-HTLVGNSLTSMYAK--RGLVHDAYSVFDSIEDKDV--- 212
I G + ++ T++ +SL + R + SVF +
Sbjct: 336 S--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFP--PSAHIPTI 390
Query: 213 ---VSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNI-LPICASLDEDVGYFF 268
+ W VI V + +S ++ + K + +I +I L + L+ +
Sbjct: 391 LLSLIWFDVIKSDVMVVV--NKLHKYS-LVEKQPKESTISIPSIYLELKVKLENE----- 442
Query: 269 GREIH-----CYVLRRAELIADVSVCNALVSFYLRFGR----TEEAEL--LFRRMKSRDL 317
+H Y + + D+ FY G E E LFR +
Sbjct: 443 -YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----- 496
Query: 318 VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHG 377
+ + +L+ ++ W S ++++ L LK K
Sbjct: 497 ---------FL-DFRFLEQ-----KIRHDSTAWNASGSILNTL---QQLKFYK------P 532
Query: 378 YFLR-HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYN 436
Y P E + A FL +LI
Sbjct: 533 YICDNDPKYER-----------------LVNAILDFLPKIEENLI--------------C 561
Query: 437 SQFLNLLNCMLM---EGIRPDSITIL 459
S++ +LL LM E I ++ +
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 63/448 (14%), Positives = 125/448 (27%), Gaps = 132/448 (29%)
Query: 488 LGDTEHNIGNAI---LDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA 544
G+ ++ + + DA+ + K ++ +S+L K + D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----------------DHI 54
Query: 545 FMTFSRIYARDLTPWNLMIRVYAEN---DFPNQALSL---FL--KLQAQGMKPDAVTIMS 596
M+ + W + E F + L + FL ++ + +P +T M
Sbjct: 55 IMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 597 LLPVCSQMASVHLLRQCHGYVIRA-CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD 655
+ + + + V R + +L ALL L P K+
Sbjct: 113 IEQRDRLYNDNQVFAKYN--VSRLQPYL--KLRQALLEL----------------RPAKN 152
Query: 656 VVMLTAMIGGYAMHGMGKA--ALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLE 712
V++ + G GK AL V + + L C+ V E L+
Sbjct: 153 VLI-------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQ 203
Query: 713 -IFRSIEK-----VQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEA--------D 758
+ I+ + S+ L R L ++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--------LLKSKPYENCLLVLLNVQN 255
Query: 759 CNVWGTLLGACRIHHEVEL----GRVVANRLFEMEADNIGNYVVMSNLYAAD-----ARW 809
W +C+I L + V + L +I L + ++
Sbjct: 256 AKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 810 DGVVEIRKLMKTRDLKK------PAACSWIEVERKNNAFMAGDYSHPRRD----MI---- 855
+ +DL + P S I ++ ++ H D +I
Sbjct: 311 LD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 856 -----------YWVLSIL--DEQIKDQV 870
+ LS+ I +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 1e-05
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 630 ALLHLYAKCGSIFSASKIFQCHPQK-------DVVMLTAMIGGYAMHGMGKAALKVFSDM 682
A + A + H + + M A++ G+A G K + V +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 683 LELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG 741
+ G+ PD + A L +E +G+K A L+ R
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 2e-05
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 655 DVVMLTAMIGGYAMHGMGKAALKV---FSDMLELGVNPDHVVITAVLSACSHAGLVDEGL 711
L A + A + + + AV+ + G E +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 712 EIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746
+ ++ G+ P YA+ + + R Q +
Sbjct: 186 YVLFMVKD-AGLTPDLLSYAAALQCMGRQDQDAGT 219
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.0 bits (107), Expect = 6e-05
Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 10/126 (7%)
Query: 139 RDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVH 198
+ P +A +L + ++ + L + +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 199 DAYSVFDSIEDK-------DVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN---YA 248
A+ + + + +NAV+ G + + + + + P+ YA
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 249 TILNIL 254
L +
Sbjct: 205 AALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 1e-04
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRT 302
+ +L C D + + + R+ + + + NA++ + R G
Sbjct: 123 LSGQQQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 303 EEAELLFRRMKSR----DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVS 358
+E + +K DL+S+ A + D+ + E +++E + ++
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 359 LLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDME 406
LL LK ++ F P L L YAK +
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 2e-04
Identities = 21/167 (12%), Positives = 52/167 (31%), Gaps = 9/167 (5%)
Query: 585 QGMKPDAVTIMSLLPVCSQMASV----HLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640
+ +++ C + HLL HG + + + A++ +A+ G+
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 641 IFSASKIFQCHPQK----DVVMLTAMIGGYAMHGMG-KAALKVFSDMLELGVNPDHVVIT 695
+ D++ A + + M + G+ +
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742
+LS A ++ ++ + + P L D+ A+ G+
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 2e-04
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 521 EKRNLVTFNPVISGYANCGSADEAFMTFSRIYAR-------DLTPWNLMIRVYAENDFPN 573
A + + L +N ++ +A
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 574 QALSLFLKLQAQGMKPDAVTIMSLL 598
+ + + ++ G+ PD ++ + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 4e-04
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
Query: 446 MLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEH---NIGNAILDA 502
+ +L C L + H L+ + ++ NA++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCC---LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 503 YAKCRNIKYAFNVFQSLLEKR---NLVTFNPVISGYANCGSADEA 544
+A+ K V + + +L+++ +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 875 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.37 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.17 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.95 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.89 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.56 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.96 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.91 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.83 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.08 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.89 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.89 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.26 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.81 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.35 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.34 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.16 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 86.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.57 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.29 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.49 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.63 Aligned_cols=497 Identities=9% Similarity=-0.070 Sum_probs=287.2
Q ss_pred HHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHH
Q 002834 294 SFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGK 373 (875)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 373 (875)
..+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3456678888888889988888999999999999999999999999999996 4589999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC-------------------CcchHHHHHHHHhccC
Q 002834 374 EIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR-------------------DLISWNSMLDAFSESG 434 (875)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g 434 (875)
.++..+... +.+.. +++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|
T Consensus 138 ~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSA-CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHTCGG--GTCHH-HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc--ccchh-HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 999987654 33444 8999999999999999999999965443 3788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCchhh--HHHH-HHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHH
Q 002834 435 YNSQFLNLLNCMLMEGIRPDSIT-ILTIIHFCTTVLREGM--VKET-HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIK 510 (875)
Q Consensus 435 ~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 510 (875)
++++|+++|++|.+.+ |+..+ +..+...+...+.... ...+ +..+...+. .....+++.++..|.+.|+++
T Consensus 215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA---AFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH---HHHHHHHHTTSCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH---HHHHHHHHHHHHHHcCcchHH
Confidence 9999999999998864 54433 3333322222211111 1111 222222222 333444555566677777777
Q ss_pred HHHHHHHhhccC-CCcccHHHHHHHhhcCCChHHHHHHHHhhhcC---CCccHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 002834 511 YAFNVFQSLLEK-RNLVTFNPVISGYANCGSADEAFMTFSRIYAR---DLTPWNLMIRVYAENDFPNQALSLFLKLQAQG 586 (875)
Q Consensus 511 ~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 586 (875)
+|.++|+++... ++..+|+.++.+|.+.|++++|..+|+++... +...+..++.+|.+.|++++|..+++++.+..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 777777777663 36667777777776666666666666666432 33336666666666666666666666665431
Q ss_pred CCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHH
Q 002834 587 MKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMI 663 (875)
Q Consensus 587 ~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 663 (875)
+.+..++..+...+.+.|+++.|.++++.+.+..+.+...+..++..|.+.|++++|.++|+++.+ .+..+|+.++
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 223444444555555555555555555555544444444455555555555555555555544321 2344455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC--hhHHHHHHHHhh
Q 002834 664 GGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT--PEQYASLVDLLA 738 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~ 738 (875)
.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 55555555555555555554431 2234444444445555555555555555444321 33444 334455555555
Q ss_pred cCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 739 RGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
+.|++++|.++++++. ..| +..+|..+..+|...|+++.|.+.++++++++|+++..+..|+++|
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5555555555554442 122 3444445555555555555555555555555555555555444444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=347.15 Aligned_cols=503 Identities=11% Similarity=-0.037 Sum_probs=339.9
Q ss_pred HHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchh
Q 002834 86 NLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAG 165 (875)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (875)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.| ++++|+.+|++|... .|+..++..+..+|.+.|+++.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHH
Confidence 34567788888999999999899999999999999999 999999999999864 57889999999999999999999
Q ss_pred hhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCC-------------------CeeeHHHHHHHHHcCC
Q 002834 166 KSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDK-------------------DVVSWNAVISGLSENK 226 (875)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g 226 (875)
..+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999987543 688899999999999999999999999964433 3779999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHH-HHHHHHhcccCCchhHhhhHHHHhHhcCChhHH
Q 002834 227 VLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREI-HCYVLRRAELIADVSVCNALVSFYLRFGRTEEA 305 (875)
Q Consensus 227 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 305 (875)
++++|.++|++|.+. .|+..+....+..+..............+ +..+...+... ...+|+.++..|.+.|++++|
T Consensus 215 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 215 NFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHH
Confidence 999999999999875 45544433333333222211111111111 22222222222 566788889999999999999
Q ss_pred HHHhhhcCC--CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 002834 306 ELLFRRMKS--RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHP 383 (875)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (875)
.++|+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.+.|..++..+.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 999999987 789999999999999999999999999999865 2356667777777777777777777777766442
Q ss_pred CCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC---CCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHH
Q 002834 384 YLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC---RRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460 (875)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 460 (875)
++...++..++.+|.+.|++++|.++|+++. ..+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 370 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 437 (597)
T 2xpi_A 370 --PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------- 437 (597)
T ss_dssp --TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 2222255555555555555555555555442 2234455555555555555555555555554432
Q ss_pred HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcC
Q 002834 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANC 538 (875)
Q Consensus 461 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~ 538 (875)
+.+..++..++.+|.+.|++++|.++|+++... | +..+|
T Consensus 438 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 478 (597)
T 2xpi_A 438 -----------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL---------- 478 (597)
T ss_dssp -----------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH----------
T ss_pred -----------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----------
Confidence 223333344444555555555555555544331 1 33344
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCCcchHhcHHHHhhcccchHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ----GMKPDAVTIMSLLPVCSQMASVHLLRQCH 614 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 614 (875)
+.++.+|.+.|++++|+++|+++.+. +..|+.
T Consensus 479 ---------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----------------------- 514 (597)
T 2xpi_A 479 ---------------------NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----------------------- 514 (597)
T ss_dssp ---------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------------------
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------------------
Confidence 44444447777777777777777653 333321
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 615 GYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
...+|+.++.+|.+.|++++|++.|+++.+.+ +.+..+|
T Consensus 515 ----------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 553 (597)
T 2xpi_A 515 ----------------------------------------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH 553 (597)
T ss_dssp ----------------------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence 03457888888888889999999998888753 4467788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA 738 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 738 (875)
..+..+|.+.|++++|.++|+++.+ +.|+ ...+..+..+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHh
Confidence 8888888999999999999988877 4565 346666666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-25 Score=236.00 Aligned_cols=369 Identities=12% Similarity=0.075 Sum_probs=271.5
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 429 AFSESGYNSQFLNLLNCMLMEGIRPDSI-TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 429 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
.+.+.|++++|+..++++.+. .|+.. .+..+...+...++.+.+...++...+.. +.+...+..+...|.+.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCC
Confidence 344455555555555555443 23332 22233333444555555555555555443 455666777777777777
Q ss_pred CHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHH
Q 002834 508 NIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKL 582 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m 582 (875)
++++|...|+++... | +..+|..+..++.+.|++++|...|+++...++.. +..+...+...|++++|...|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777776553 4 34467777777777777777777777775544333 666777777778888888888877
Q ss_pred HHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhh
Q 002834 583 QAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVM 658 (875)
Q Consensus 583 ~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 658 (875)
.+. .|+ ..++..+...+...|+.+.|...++.+.+..+.....+..+...+...|++++|...|++... .+..+
T Consensus 162 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 162 IET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 764 333 456667777777778888888888888777777777888888888999999999988886553 45678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
|..+...|...|++++|++.|+++.+.+ +.+..++..+..++.+.|++++|.+.|+++.+. .+++...+..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8899999999999999999999998852 234567888888999999999999999999873 3445668889999999
Q ss_pred cCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 739 RGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
+.|++++|.+.++++. ..| +..+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998875 445 467888898999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=230.10 Aligned_cols=349 Identities=12% Similarity=0.109 Sum_probs=308.0
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
...+.+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++..... | +..+|..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 345667899999999999988875 556677788888999999999999999887764 4 6678999999999999
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch-HhcHHHHhhcccchHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMASVHLLRQCHG 615 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~ 615 (875)
++++|...|+++...++.. |..++.+|.+.|++++|+..|+++.+. .|+... +..+...+...|+++.|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999996655443 899999999999999999999999875 566554 4566677888999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DH 691 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 691 (875)
.+.+..+.+...+..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99999888899999999999999999999999998764 45678999999999999999999999999884 45 46
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 768 (875)
.++..+..++...|++++|.+.|+++.+ ..|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 7788888899999999999999999987 5565 5589999999999999999999999985 45577899999999
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+...|+++.|+..+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=250.01 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=176.6
Q ss_pred CChhh-HHHHHHHHhhcCCCCCCC-hhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHH
Q 002834 20 GLHKE-ALSLFAHELQSSPSVRHN-HQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDC 97 (875)
Q Consensus 20 ~~~~~-a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 97 (875)
|+... +..+.+++.+.. ..++ ...++.+|.+|++.|++..|.+++++|.+.|+.||..+||+||.+|++.+...++
T Consensus 3 G~~~s~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKA--IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp -----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS
T ss_pred ccccchHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh
Confidence 34433 345555565554 3333 3468888999999999999999999999999999999999999999887764332
Q ss_pred HHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCC
Q 002834 98 YKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGL 177 (875)
Q Consensus 98 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 177 (875)
...+ ..++|.++|++|...| +.||..||++||.+|++.|+++.|.+++++|.+.|+
T Consensus 81 ----------------------~~~~-~l~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 81 ----------------------SPNP-GLSRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp ----------------------SCCH-HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------hhcc-hHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 2344 6789999999999999 999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHhHhcCChhHHHHHhccCC----CCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhH
Q 002834 178 ERHTLVGNSLTSMYAKRGLVHDAYSVFDSIE----DKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNI 253 (875)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 253 (875)
.||..+|++||.+|++.|++++|.++|++|. .||..||++||.+|++.|++++|.++|++|++.|+.|+..||..+
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999999999999996 489999999999999999999999999999999999999999888
Q ss_pred HHHhccC
Q 002834 254 LPICASL 260 (875)
Q Consensus 254 l~~~~~~ 260 (875)
+..+...
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 8876553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=237.18 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=170.2
Q ss_pred chHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCc---------hHHHHHHHHHHHHhcCCCC
Q 002834 7 KSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLAD---------ILLGKALHGYVTKLGHISC 77 (875)
Q Consensus 7 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 77 (875)
..++.+|.+|++.|++++|+++|++|.+.+ +.||..||+.||.+|++.+. +..|.+++++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 468899999999999999999999999986 99999999999999987654 6789999999999999999
Q ss_pred chhhhHHHHHHHccCCchHHHHhhccCC----CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 002834 78 QAVSKALLNLYAKCGVIDDCYKLFGQVD----NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVL 153 (875)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 153 (875)
..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.| ++++|.++|++|.+.| +.||..||+.||
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li 182 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESE-VVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT-CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 9999999999999999999999999984 589999999999999999 9999999999999999 999999999999
Q ss_pred HHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhc
Q 002834 154 SACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKR 194 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 194 (875)
.+|++.|+++.|.+++++|.+.|..|+..||+.++..|+..
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=219.51 Aligned_cols=322 Identities=10% Similarity=0.088 Sum_probs=268.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIR 564 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~ 564 (875)
+.+...+..+...|.+.|++++|...|+++... | +..+|..+..+|...|++++|...|+++...++.. +..++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 556677788888999999999999999987763 3 67788888899999999999999999886655443 888899
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCc----chHhcH------------HHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 565 VYAENDFPNQALSLFLKLQAQGMKPDA----VTIMSL------------LPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 565 ~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
+|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+..+.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999998864 4543 333333 3347888999999999999999888888999
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH-------
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAV------- 697 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l------- 697 (875)
..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+. .|+... +..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 56789999999999999999999999999974 555444 3333
Q ss_pred -----HHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 002834 698 -----LSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTL 765 (875)
Q Consensus 698 -----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 765 (875)
..+|.+.|++++|.++|+++.+ +.|+ ..+|..++.++.+.|++++|++.++++. ..| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 6789999999999999999988 4455 4488999999999999999999999974 444 67999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH------------HHHHhcC-----CchhHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS------------NLYAADA-----RWDGVVEIRKL 818 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~ 818 (875)
+.+|...|+++.|+..++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999 4566667 34444554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-17 Score=187.69 Aligned_cols=730 Identities=11% Similarity=0.109 Sum_probs=457.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 002834 9 WITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLY 88 (875)
Q Consensus 9 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (875)
.+-++.++++.|.+++++..-+ +. +..|| |..||+.+.+.. .+.|..+-..+.+.. +.....+.+++.+
T Consensus 485 ~~Kvi~~l~~~gq~~ki~~Y~~---~~--~~~pD---y~~ll~~~~~~~-P~~~~~fa~~L~~~~--~p~~d~~~ivd~f 553 (1630)
T 1xi4_A 485 PNKVIQCFAETGQVQKIVLYAK---KV--GYTPD---WIFLLRNVMRIS-PDQGQQFAQMLVQDE--EPLADITQIVDVF 553 (1630)
T ss_pred cHHHHHHHHHhCCHHHHHHHHh---cc--CCCcc---HHHHHHHHhhcC-hHHHHHHHHHHhcCC--CCccCHHHHHHHH
Confidence 4678999999999988877632 22 24444 567777776543 555666555555542 2344456678888
Q ss_pred HccCCchHHHHhhccC-CC--------------------C---------Cc---hhHHHHHHHHhcCCCChhHHHHHHHH
Q 002834 89 AKCGVIDDCYKLFGQV-DN--------------------T---------DP---VTWNILLSGFACSHVDDARVMNLFYN 135 (875)
Q Consensus 89 ~~~g~~~~A~~~~~~~-~~--------------------~---------~~---~~~~~li~~~~~~~~~~~~a~~~~~~ 135 (875)
...+.+.++..++-+. +. | +. ..|..+-..|-+.| -+..|++.|..
T Consensus 554 ~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aG-l~qrale~y~d 632 (1630)
T 1xi4_A 554 MEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAG-LLQRALEHFTD 632 (1630)
T ss_pred HhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcC-cHHHHHHhcCC
Confidence 8888888887766332 11 1 11 22555666677888 99999998875
Q ss_pred hHhcCC-CCCC-cchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC----
Q 002834 136 MHVRDQ-PKPN-SVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---- 209 (875)
Q Consensus 136 m~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 209 (875)
+..-.. +..+ ...-.-|+..+. .=..+.+.+++..|++.+++-+..+.-.+..-|...=..+...++|++...
T Consensus 633 ~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl 711 (1630)
T 1xi4_A 633 LYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGL 711 (1630)
T ss_pred HHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhH
Confidence 543210 1111 111122333333 345678888888888877666655444444445444445555666655441
Q ss_pred -----------CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhH-----------HhHHHHhccCCcccccc
Q 002834 210 -----------KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATI-----------LNILPICASLDEDVGYF 267 (875)
Q Consensus 210 -----------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-----------~~ll~~~~~~~~~~~~~ 267 (875)
.|.......|.+.++.|.+.+..++.++- .-..|. .+- ..+|..|-+.+
T Consensus 712 ~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res--~~y~~e-~vk~flk~~kl~d~~pli~vCdr~~------ 782 (1630)
T 1xi4_A 712 FYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRES--NCYDPE-RVKNFLKEAKLTDQLPLIIVCDRFD------ 782 (1630)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccC--CCCCHH-HHHHHHhhCCCCCCCCceeeccccc------
Confidence 46667778899999999988888776651 111111 000 11333333332
Q ss_pred chhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC---------------CCccchHHHHHHHHcCCC
Q 002834 268 FGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS---------------RDLVSWNAIIAGYASNDE 332 (875)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~ 332 (875)
...++...+-+.+.. ..|..|...-++..+-.+...+.. ++...-..|+...-+.++
T Consensus 783 ~v~~l~~yLy~n~~~--------~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnr 854 (1630)
T 1xi4_A 783 FVHDLVLYLYRNNLQ--------KYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNR 854 (1630)
T ss_pred cHHHHHHHHHhcCch--------hHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 111221111111111 112222222111111111111110 223334555555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH----------HHHHHHHHhcCCCCchh-----hHHHHHHH
Q 002834 333 WLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG----------KEIHGYFLRHPYLEEDA-----AVGNALVS 397 (875)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~~~~~~~~-----~~~~~li~ 397 (875)
..--+..++.-...| ..|..+++++.+-+...++-.+. .-+=+...++.....-. ..-.-||+
T Consensus 855 Lkll~p~LE~~~~~g--~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 855 LKLLLPWLEARIHEG--CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 666666667666666 46777888888877765432221 11111111111000000 00112333
Q ss_pred HHhcCCChhH-HHHHHHhc-----------------------------CCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 002834 398 FYAKCSDMEA-AYRTFLMI-----------------------------CRRDLISWNSMLDAFSESGYNSQFLNLLNCML 447 (875)
Q Consensus 398 ~~~~~g~~~~-A~~~~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 447 (875)
..-+.+-+.. |+-+.++. ...++.--...+..|...|.+.+|++++++..
T Consensus 933 vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333333221 11111111 01133344566778889999999999999988
Q ss_pred HCCC--CCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 002834 448 MEGI--RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNL 525 (875)
Q Consensus 448 ~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 525 (875)
..+- .-+...-+.++.+..+. +...+.++.....+.. ...+...+...|.+++|..+|++... ..
T Consensus 1013 l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d----------~~eIA~Iai~lglyEEAf~IYkKa~~--~~ 1079 (1630)
T 1xi4_A 1013 LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD----------APDIANIAISNELFEEAFAIFRKFDV--NT 1079 (1630)
T ss_pred cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc----------HHHHHHHHHhCCCHHHHHHHHHHcCC--HH
Confidence 4421 11223334455555454 6666666666654222 24577888899999999999999752 22
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 526 VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
...+.++. ..+++++|.++.++. ..+..|..+..++.+.|++++|+..|.+. -|...|..+..+|.+.|
T Consensus 1080 ~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1080 SAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 22333333 678899999999877 33566999999999999999999999663 46678888999999999
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+++++.+++..+.+.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1149 kyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred CHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 9999999999888766 34444556999999999999655443 3456677888999999999999999999985
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHH
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTL 765 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 765 (875)
..|..+..++.+.|++++|.+.+++. -+..+|..+..++...|++..|........ -++..+..+
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeel 1286 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEEL 1286 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHH
Confidence 48889999999999999999999877 235788889999999999999998877643 344556688
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc--CCchhHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD--ARWDGVVEIR 816 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~ 816 (875)
...|...|.++.|+..+++++.++|.+.+.+.-|+.+|++- ++..++++.+
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88899999999999999999999999999998888888774 4555555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-17 Score=187.14 Aligned_cols=729 Identities=10% Similarity=0.028 Sum_probs=463.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCC------------
Q 002834 9 WITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHIS------------ 76 (875)
Q Consensus 9 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 76 (875)
|..||+.+.+.+ ++.|.++-..+....+ ....+..+...+...+.+.++..++-++.+.+.+.
T Consensus 514 y~~ll~~~~~~~-P~~~~~fa~~L~~~~~----p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~N 588 (1630)
T 1xi4_A 514 WIFLLRNVMRIS-PDQGQQFAQMLVQDEE----PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMN 588 (1630)
T ss_pred HHHHHHHHhhcC-hHHHHHHHHHHhcCCC----CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHh
Confidence 556666665443 5555555544444321 12223444445555555555555554444433221
Q ss_pred -----------------CchhhhHHHHHHHccCCchHHHHhhccCCC-------CCchhHHHHHHHHhcCCCChhHHHHH
Q 002834 77 -----------------CQAVSKALLNLYAKCGVIDDCYKLFGQVDN-------TDPVTWNILLSGFACSHVDDARVMNL 132 (875)
Q Consensus 77 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~~a~~~ 132 (875)
+.+-...+...|-+.|-+..|++.+..+.. .+...-..++.-+.+ = ..+.++++
T Consensus 589 l~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l-~~~~s~~~ 666 (1630)
T 1xi4_A 589 LMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-L-SVEDSLEC 666 (1630)
T ss_pred hccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-C-CHHHHHHH
Confidence 334445667888899999999999976531 122223345555544 3 68999999
Q ss_pred HHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHH-----------hCCCCCcchhhHHHHHhHhcCChhHHH
Q 002834 133 FYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIK-----------FGLERHTLVGNSLTSMYAKRGLVHDAY 201 (875)
Q Consensus 133 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~ 201 (875)
+.+|...+ ++-|......+..-|...=..+....+|+.... -.+..|+.+....|.+.++.|++.+.+
T Consensus 667 l~~~l~~n-~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~eve 745 (1630)
T 1xi4_A 667 LRAMLSAN-IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVE 745 (1630)
T ss_pred HHHHHHHh-HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhh
Confidence 99999866 554433322222222222222222333332211 125678889999999999999999998
Q ss_pred HHhccCCC---------------CCee----------------------eHHHHHHHHHcCCCcchHHHHHHHHHhCCCC
Q 002834 202 SVFDSIED---------------KDVV----------------------SWNAVISGLSENKVLGDAFRLFSWMLTEPIK 244 (875)
Q Consensus 202 ~~~~~~~~---------------~~~~----------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 244 (875)
++..+-.- +|.. .....|..|.+.-++..+-.+...+...+..
T Consensus 746 ri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~ 825 (1630)
T 1xi4_A 746 RICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCS 825 (1630)
T ss_pred HHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCC
Confidence 88766320 1110 1123355565554443333333222221110
Q ss_pred -----------CChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcC
Q 002834 245 -----------PNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMK 313 (875)
Q Consensus 245 -----------p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 313 (875)
.+......++..+-+.. .+.......+.-+..|.. ++.++|+|...|...++--+ +.+.+
T Consensus 826 e~~ik~ll~~v~~~~~~~~lv~~~ekrn---rLkll~p~LE~~~~~g~~--~~~~hnalakiyid~n~npe--~fL~~-- 896 (1630)
T 1xi4_A 826 EDVIKNLILVVRGQFSTDELVAEVEKRN---RLKLLLPWLEARIHEGCE--EPATHNALAKIYIDSNNNPE--RFLRE-- 896 (1630)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhccCCCHH--HHhhc--
Confidence 11222344555544444 444444444444444433 78899999999997654222 11111
Q ss_pred CCCccchHHHHHHHHcCCCHHHHHHHHHH-----------------------HHHcCCCCCChhhHHHHHHHHhccCChh
Q 002834 314 SRDLVSWNAIIAGYASNDEWLKALNLFCE-----------------------LITKEMIWPDSVTLVSLLPACAYLKNLK 370 (875)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----------------------m~~~~~~~pd~~t~~~ll~~~~~~~~~~ 370 (875)
|..-=..++.-||...++--|.-.|++ +.++ -|...|..++. .+-+
T Consensus 897 --n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r----~d~~lW~~vl~-----~~n~ 965 (1630)
T 1xi4_A 897 --NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR----KDPELWGSVLL-----ESNP 965 (1630)
T ss_pred --cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh----cCHHHHHHHhc-----CCcH
Confidence 111111223334444444333333322 0111 23333333331 1112
Q ss_pred hHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCCChhHHHHHHHhcCCC------CcchHHHHHHHHhccCChhHHHHHH
Q 002834 371 VGKEIHGYFLRHPYLE-EDAAVGNALVSFYAKCSDMEAAYRTFLMICRR------DLISWNSMLDAFSESGYNSQFLNLL 443 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 443 (875)
.-+++.++.....++. .++.-....+..|...|...+|.++++++... +...-+.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 3334444443333211 11113367788888999999999999988532 224455677666666 456666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 444 NCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 444 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
.+.... + ..-+-..|...+.+++|..+++...... .++-..+...+++++|.++.++..
T Consensus 1045 ~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~~~-----------~A~~VLie~i~nldrAiE~Aervn--- 1103 (1630)
T 1xi4_A 1045 NRLDNY----D---APDIANIAISNELFEEAFAIFRKFDVNT-----------SAVQVLIEHIGNLDRAYEFAERCN--- 1103 (1630)
T ss_pred HHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhHHHHHHHHHhcC---
Confidence 555421 1 2335566778899999999998853111 112222338899999999999763
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ 603 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 603 (875)
+..+|..+..++...|++++|+..|.+. .++..|..++.++.+.|++++|++.|....+.. +++...+.+.-+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 5789999999999999999999999775 667779999999999999999999999877754 444444468889999
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
.++++....+. .+. +...+..+.+.|...|++++|..+|..+ ..|..+..+|.+.|++++|++.+++.
T Consensus 1180 l~rleele~fI-----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI-----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred hcCHHHHHHHH-----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 98888655442 122 4455567999999999999999999986 47999999999999999999999986
Q ss_pred HCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HH
Q 002834 684 ELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NV 761 (875)
Q Consensus 684 ~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~ 761 (875)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++... .+|.. ..
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 4568999999999999999999886643 44466778899999999999999999998874 45543 56
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHhcccC-----CCCccHHHHHHHHHhcCCchhHHH
Q 002834 762 WGTLLGACRIH--HEVELGRVVANRLFEMEA-----DNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 762 ~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
|..|..++.+. +++..+.+.|..-+.+.| +++..|.-+..+|.+.|+|++|..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666666554 577788888888888877 788889999999999999999995
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=216.26 Aligned_cols=238 Identities=8% Similarity=-0.055 Sum_probs=142.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+..+.+..++..+...|...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 4455555566666666666666655542 22344444444455555555555555555444444445555666666666
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|++++|...|++..+ .+..+|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665432 344566666666677777777777777766641 2334556666667777777777777777
Q ss_pred HhHHHhCCCCC----hhHHHHHHHHhhc---CCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 716 SIEKVQGIKPT----PEQYASLVDLLAR---GGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 716 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
++.+...-.|+ ...+..++.++.. .|++++|.+.++++. ..| +..+|..+...+...|+++.|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76653222222 2266667777777 777777777776653 233 45666666677777777777777777777
Q ss_pred cccCCCCccHHHH
Q 002834 787 EMEADNIGNYVVM 799 (875)
Q Consensus 787 ~~~p~~~~~~~~l 799 (875)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 7777766655544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-21 Score=212.26 Aligned_cols=259 Identities=8% Similarity=-0.077 Sum_probs=220.2
Q ss_pred HHHHHHHHHH---cCCchHHHHHHHHHHH-----CCCCCC--------cchHhcHHHHhhcccchHHHHHHHHHHHHhcC
Q 002834 559 WNLMIRVYAE---NDFPNQALSLFLKLQA-----QGMKPD--------AVTIMSLLPVCSQMASVHLLRQCHGYVIRACF 622 (875)
Q Consensus 559 ~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~~p~--------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 622 (875)
+..+...+.. .|++++|+..|+++.+ ....|+ ...+..+...+...|+++.|...+..+.+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 4444444454 8999999999999987 322332 34566777888999999999999999999988
Q ss_pred CCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 623 DGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
. ...+..+...|...|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 269 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 346 (514)
T 2gw1_A 269 R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLAC 346 (514)
T ss_dssp C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHH
Confidence 8 88999999999999999999999997654 466789999999999999999999999999853 335667888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRI 771 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~ 771 (875)
.+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.++++. ..++ ...|..+...+..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999873 22245688999999999999999999998873 2222 3488999999999
Q ss_pred ---cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 772 ---HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 772 ---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+++.|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=203.71 Aligned_cols=216 Identities=12% Similarity=-0.018 Sum_probs=108.5
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
+...|+++.|...+..+.+..+. ...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+.
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 33334444444444444444333 33444444445555555555555544332 234455555555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--
Q 002834 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 754 (875)
.|+++.+.. +.+...+..+..++...|++++|.++++++.+. .|+ ...+..++.++...|++++|.+.++++.
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555555531 222344455555555556666666665555542 222 3355555555555566666655555541
Q ss_pred --CCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 755 --VEA----DCNVWGTLLGACRIH----------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 755 --~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
..+ ....+..+...+... |+++.|+..++++++.+|+++..+..++.+|...|++++|.+.++.
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 011 111122333444444 6666666666666666666666666666666666666666665555
Q ss_pred HHh
Q 002834 819 MKT 821 (875)
Q Consensus 819 ~~~ 821 (875)
..+
T Consensus 488 al~ 490 (537)
T 3fp2_A 488 SAI 490 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=198.32 Aligned_cols=345 Identities=9% Similarity=-0.040 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHH
Q 002834 419 DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNA 498 (875)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 498 (875)
+...|..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcHHHHHH
Confidence 45567788888888899999999998888753 3356667777777778888888888888877765 556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-C-Cc---ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCch
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK-R-NL---VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~-p-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (875)
+...|.+.|++++|.+.|+++... | +. ..+..++..+...+ +..+...+.+.|+++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHH
Confidence 888888888888888888887764 3 23 45555544311000 111222334444455
Q ss_pred HHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC
Q 002834 574 QALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ 653 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (875)
+|+..|+++.+.. +.+...+..+..++...|+.+.|...+..+.+..+.+...+..++..|.+.|++++|...|+++..
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555554444321 112333444444444445555555555544444444555556666666666666666666665443
Q ss_pred --C-ChhhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 654 --K-DVVMLTAM------------IGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 654 --~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
| +...+..+ +..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 33334333 78888899999999999998884 455 33677777888899999999999
Q ss_pred HHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHH------------HHhcC-----
Q 002834 714 FRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGA------------CRIHH----- 773 (875)
Q Consensus 714 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~~----- 773 (875)
++++.+ ..| +...|..++.+|...|++++|.+.++++. ..|+ ...+..+..+ |...|
T Consensus 318 ~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 318 CSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 998877 345 45688889999999999999999998873 5564 4566655532 33333
Q ss_pred ChhHHHHHHHH-HhcccCCCC
Q 002834 774 EVELGRVVANR-LFEMEADNI 793 (875)
Q Consensus 774 ~~~~a~~~~~~-~~~~~p~~~ 793 (875)
+.+.+.+.+++ +++..|++.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCC
Confidence 56777888886 788888764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-19 Score=200.79 Aligned_cols=255 Identities=8% Similarity=-0.045 Sum_probs=203.7
Q ss_pred ChHHHHHHHHhhhcCCCcc----------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHH
Q 002834 540 SADEAFMTFSRIYARDLTP----------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHL 609 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~ 609 (875)
++++|..+++++...++.. +..+...+...|++++|+..|+++.+. .|+...+..+...+...|+++.
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 5566666666665544432 455667778889999999999988875 4566777788888889999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG 686 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 686 (875)
|...+..+.+..+.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..++++.+..
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999988888888899999999999999999999997654 456789999999999999999999999999863
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcC----------CChHHHHHHHHh
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARG----------GQISDAYSLVNR 752 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~ 752 (875)
+.+...+..+...+...|++++|.+.|+++.+...-.++ ...+..++.++.+. |++++|...+++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 444567888888999999999999999998774322222 22345566778887 999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+. ..| +..+|..+..++...|+.+.|...+++++++.|+++....
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 84 344 5688999999999999999999999999999999876544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-18 Score=178.23 Aligned_cols=303 Identities=11% Similarity=0.092 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHH
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAE 568 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 568 (875)
..+..+...+...|++++|...|+++... | +..++..+...+...|++++|...++++...++.. |..+..+|..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34455666667777777777777766553 3 45566666777777777777777777765543332 6677777777
Q ss_pred cCCchHHHHHHHHHHHCCCCC---Cc-chHhcH------------HHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKP---DA-VTIMSL------------LPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALL 632 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p---~~-~~~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 632 (875)
.|++++|+..|+++.+. .| +. ..+..+ ...+...|+.+.|...+..+.+..+.+..++..+.
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 77777787777777654 34 21 122222 23444455555555555555555544555555555
Q ss_pred HHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHH------------H
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVIT------------A 696 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~------------~ 696 (875)
..|...|++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+. ..+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 666666666666666654433 34455556666666666666666666665553 2322 1111 1
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-----EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
+...+.+.|++++|.+.++++.+. .|+. ..+..++.++...|++++|.+.+++.. ..| ++.+|..+..++
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 133455556666666666655542 2221 123345555556666666666655553 223 445555555555
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
...|+++.|...++++++++|+++..+..++.++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5566666666666666666666555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=176.54 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=259.0
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
++..+..+...+...|++++|...|+++...++.. +..+..+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34567788889999999999999999997665543 8899999999999999999999998753 2245677788889
Q ss_pred hhcccchHHHHHHHHHHHHhcC---CCchHHHHH------------HHHhHhcCCHHHHHHHhccCCC---CChhhHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACF---DGVRLNGAL------------LHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAM 662 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 662 (875)
+...|+.+.|...+..+.+..+ .+...+..+ ...+...|++++|.+.|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999888 655555555 6889999999999999998654 567889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHH----------
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYA---------- 731 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~---------- 731 (875)
...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+ ..|+.. .+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999852 44667788888899999999999999999987 344432 222
Q ss_pred --HHHHHhhcCCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 732 --SLVDLLARGGQISDAYSLVNRMP-VEAD-C----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 732 --~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.++..+.+.|++++|.+.++++. ..|+ . ..+..+..++...|+++.|...++++++.+|+++..+..+|.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33777999999999999999874 3443 3 23455777888999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 804 AADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
...|++++|.+.++...+. .|...++...+..+...+++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHHHHHHHHHH
Confidence 9999999999999887642 35555666666666666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=169.70 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=194.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL---TPWNLMIR 564 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~ 564 (875)
+.+..++..+...+...|++++|.++|+++... | +...+..++..+...|++++|...++++...++ ..|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 444555566666666667777777766666543 3 334455555556555555555555555433222 22455555
Q ss_pred HHHHcC-CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHH
Q 002834 565 VYAEND-FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFS 643 (875)
Q Consensus 565 ~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 643 (875)
.+...| ++++|...|++.. +..+.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT-----------------------------------TLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH-----------------------------------TTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHH-----------------------------------HhCCccHHHHHHHHHHHHHccCHHH
Confidence 555555 5555555555544 3333344555666777777788888
Q ss_pred HHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 644 ASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 644 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
|...|++..+ .+...|..+...|...|++++|++.+++..+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8777776553 345667778888888889999999998888752 344567777788888899999999999888774
Q ss_pred hCC-------CCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 721 QGI-------KPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 721 ~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..- +.....+..++.++.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...++++++++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 311 2335688888999999999999999888874 333 5678888888889999999999999999999999
Q ss_pred CCccHHHHHHHH-HhcCCch
Q 002834 792 NIGNYVVMSNLY-AADARWD 810 (875)
Q Consensus 792 ~~~~~~~l~~~~-~~~g~~~ 810 (875)
++..+..++.+| ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 999999999888 4455543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=165.36 Aligned_cols=257 Identities=10% Similarity=-0.028 Sum_probs=203.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+.+.+...+..+.+..+.+...+..+...|...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3344444455566666666666655432 122233344445555666666666666666666555677778888999999
Q ss_pred C-CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 G-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9 99999999998654 456789999999999999999999999999853 334566777888999999999999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-V----------EADCNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
+++.+ ..|+ ...+..++.++.+.|++++|...++++. . +....+|..+..++...|+++.|+..+
T Consensus 183 ~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 183 SQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99976 4555 5689999999999999999999998873 1 334578999999999999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+++++++|+++..+..++.+|...|++++|.+.++...
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=173.18 Aligned_cols=255 Identities=13% Similarity=0.001 Sum_probs=176.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+..+.+...+..++..|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3344444444444444444444444331 112233334444444444444444444444444444444555555556666
Q ss_pred CCHHHHHHHhccCCC--C-ChhhHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ--K-DVVMLTA---------------MIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLS 699 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 699 (875)
|++++|...|+++.. | +...+.. .+..+...|++++|+..|+++.+..... +..++..+..
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 666666665554332 1 1111111 1333348899999999999999853211 4678888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
.+...|++++|.+.|+++.+ ..|+ ...+..++.++.+.|++++|.+.++++. ..| +..+|..+..++...|+++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999987 3454 5689999999999999999999999874 344 5688999999999999999
Q ss_pred HHHHHHHHHhcccCCC-----------CccHHHHHHHHHhcCCchhHHHHHH
Q 002834 777 LGRVVANRLFEMEADN-----------IGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.|...+++++++.|++ +..|..++.+|...|++++|..+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999988 7789999999999999999999865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-16 Score=156.88 Aligned_cols=271 Identities=9% Similarity=-0.009 Sum_probs=180.1
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-CCc--ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK-RNL--VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~-p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 577 (875)
.-....|++..|+..++..... |+. .....+..+|...|+++.|...++...+++...+..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3445678888888888776554 322 2445566777777777777766654322222226666667777777777777
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChh
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVV 657 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 657 (875)
.++++...+..|+. +..+..+...|...|++++|++.|++ ..+..
T Consensus 87 ~l~~ll~~~~~P~~---------------------------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~ 131 (291)
T 3mkr_A 87 ELDREMSRSVDVTN---------------------------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE 131 (291)
T ss_dssp HHHHHHHSCCCCSC---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH
T ss_pred HHHHHHhcccCCCC---------------------------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH
Confidence 77777766555653 33344556677888888888888888 45677
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH---HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT---AVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
++..++..|.+.|++++|++.|+++.+. .|+..... ..+..+...|++++|..+|+++.+. .+.+...+..++
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 8888888888888888888888888875 45543211 1223333457888888888888773 334455777777
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL-GRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
.++.+.|++++|.+.++++. ..| ++.+|..++..+...|+.+. +.+.++++++++|+++.+. ++..+.+.+++
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~ 283 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDR 283 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHH
Confidence 78888888888887777763 344 55677777777777777654 5677777778887776543 34455555555
Q ss_pred HHH
Q 002834 812 VVE 814 (875)
Q Consensus 812 A~~ 814 (875)
+..
T Consensus 284 ~~~ 286 (291)
T 3mkr_A 284 LVL 286 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-14 Score=159.65 Aligned_cols=363 Identities=10% Similarity=-0.013 Sum_probs=237.9
Q ss_pred HHHHHHHHHhc----CCChhHHHHHHHhcCC-CCcchHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 002834 391 VGNALVSFYAK----CSDMEAAYRTFLMICR-RDLISWNSMLDAFSE----SGYNSQFLNLLNCMLMEGIRPDSITILTI 461 (875)
Q Consensus 391 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 461 (875)
....+...|.. .+++++|...|++... .+...+..|...|.. .++.++|+..|++..+.| +.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------ 111 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP------ 111 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH------
Confidence 44455555555 5666666666665432 344555555555555 566666666666655543 22
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK----CRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
.....+...|.. .+++++|...|++.....+..++..+...|..
T Consensus 112 --------------------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 112 --------------------------------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE 159 (490)
T ss_dssp --------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 222334444444 45555555555555444344455555555544
Q ss_pred ----CCChHHHHHHHHhhhcCCC-ccHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc----c
Q 002834 538 ----CGSADEAFMTFSRIYARDL-TPWNLMIRVYAE----NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ----M 604 (875)
Q Consensus 538 ----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~ 604 (875)
.++.++|...|++..+.+. ..+..|...|.. .+++++|+..|++..+.| +...+..+...+.. .
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 4556666666655544332 225555555555 566666666666665543 23333344444433 4
Q ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHHc-----CChHH
Q 002834 605 ASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAMH-----GMGKA 674 (875)
Q Consensus 605 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~ 674 (875)
++.+.+...+....+.+ ++.....+..+|.. .++.++|...|++..+ .+..++..+...|... ++.++
T Consensus 237 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 56666666666555443 33445556666666 8899999999988665 5667888888888887 89999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHH
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAY 747 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 747 (875)
|+.+|++..+.| +...+..+...+...| +.++|.++|++..+ . .+...+..+..+|.. .+++++|.
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999865 3455666666666656 88999999999987 2 356788888999988 89999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCC---CCccHHHHHHHHHhc
Q 002834 748 SLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEAD---NIGNYVVMSNLYAAD 806 (875)
Q Consensus 748 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 806 (875)
+++++.....++..+..|...+.. .+|.++|...++++++.+|+ ++.....|+.++...
T Consensus 388 ~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 388 IWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999988644567888888888887 79999999999999999954 777777777776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=155.86 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred HccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhH
Q 002834 89 AKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSL 168 (875)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (875)
-+.|++++|.+.+++++.| ..|..+..++.+.| ++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g-~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKG-MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3678899999999999665 48999999999999 999999999652 5777999999999999999999998
Q ss_pred HHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChh
Q 002834 169 HAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYA 248 (875)
Q Consensus 169 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 248 (875)
++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ +
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~--- 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------S--- 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------T---
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------h---
Confidence 8877774 56678899999999999999999888864 67779999999999999999999999875 1
Q ss_pred hHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHH
Q 002834 249 TILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYA 328 (875)
Q Consensus 249 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 328 (875)
.|..|+.++.+.|++++|.+.++.+. ++.+|..++.+|+
T Consensus 150 ---------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv 188 (449)
T 1b89_A 150 ---------------------------------------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 188 (449)
T ss_dssp ---------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred ---------------------------------------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHH
Confidence 26777888888888888888888873 7778888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC--CChh
Q 002834 329 SNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC--SDME 406 (875)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~ 406 (875)
..|+++.|......+. +.|+. ...++..|.+.|.++++..+++..+... +....+++-|.-+|++- +++.
T Consensus 189 ~~~ef~lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HTTCHHHHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCcHHHHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888888855544322 22332 3345555555666666655555554332 22222444444444432 3444
Q ss_pred HHHHHHHhcCC--------CCcchHHHHHHHHhccCChhHHHH
Q 002834 407 AAYRTFLMICR--------RDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 407 ~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
+..+.|..-.. .+...|.-+.-.|.+.++++.|..
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 44444432211 134455555555555555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=167.77 Aligned_cols=150 Identities=13% Similarity=-0.013 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh----HHHHHHH-HhhcCCChHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE----QYASLVD-LLARGGQISD 745 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~ 745 (875)
..++|+..+++..+.. +.+..++..+...+...|++++|.+.|+++.+ +.|+.. .+..+.. .+...|++++
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 4577888888887742 33455677788889999999999999998876 344432 2333333 2356789999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 746 AYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 746 A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
|++.+++.. ..|+...+.. ..+.++.++++.++.+|+++.+|..||.+|...|++++|++.+++..+.+.
T Consensus 391 Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999888764 6666543332 234566788899999999999999999999999999999999888766554
Q ss_pred cCCCceeEE
Q 002834 825 KKPAACSWI 833 (875)
Q Consensus 825 ~~~~~~s~~ 833 (875)
.-....+|+
T Consensus 462 ~~p~a~~~~ 470 (472)
T 4g1t_A 462 LIPSASSWN 470 (472)
T ss_dssp ---------
T ss_pred CCCcHhhcC
Confidence 433444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-14 Score=158.29 Aligned_cols=404 Identities=10% Similarity=0.013 Sum_probs=251.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh-h
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFC-T 466 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~ 466 (875)
.+..++. +.+.|+++.|..+|+++.. .+...|..++..+.+.|+.++|..+|++.+... |+...|...+... .
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 4444444 2445555555555555432 133445555555556666666666666655432 4444443333211 2
Q ss_pred ccCchhhHHH----HHHHHHHh-cCCCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCc---ccHH
Q 002834 467 TVLREGMVKE----THGYLIKT-GLLLGDTEHNIGNAILDAYAK---------CRNIKYAFNVFQSLLEKRNL---VTFN 529 (875)
Q Consensus 467 ~~~~~~~a~~----~~~~~~~~-~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~p~~---~~~~ 529 (875)
..++.+.+.+ +|+...+. |.. +.+..++...+....+ .|+++.|..+|++....|.. ..|.
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGME--IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTS--TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCC--cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 2344444333 44444332 321 2344555555555443 67888888888888776532 1222
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH------HCC---CCCCc--------c
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ------AQG---MKPDA--------V 592 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~------~~g---~~p~~--------~ 592 (875)
.........+ ...+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~-~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGIN-IHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHC-HHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhc-hhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 2111100000 001111111 12233445555554421 111 22321 1
Q ss_pred hHhcHHHHhhc----ccch----HHHHHHHHHHHHhcCCCchHHHHHHHHhHh-------cCCHH-------HHHHHhcc
Q 002834 593 TIMSLLPVCSQ----MASV----HLLRQCHGYVIRACFDGVRLNGALLHLYAK-------CGSIF-------SASKIFQC 650 (875)
Q Consensus 593 ~~~~ll~a~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~ 650 (875)
.+...+..... .++. ..+..+++.+....+.++.++..++..+.+ .|+++ +|..+|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 22222211111 1122 366678888888887788999999888876 68877 89999998
Q ss_pred CCC---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 651 HPQ---K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 651 ~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|...+..+.+.|+.++|.++|+++.+ ..
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DA 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CT
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cc
Confidence 663 3 577899999999999999999999999998 46653 4788888888899999999999999976 34
Q ss_pred CC-hhHHHHHHHH-hhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc----cH
Q 002834 725 PT-PEQYASLVDL-LARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG----NY 796 (875)
Q Consensus 725 p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~ 796 (875)
|. ...|...+.. +...|+.++|..++++.. ..| ++..|..++......|+.+.|...++++++..|.++. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 44 2333333222 336899999999999874 344 5789999999999999999999999999999887765 66
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
..++......|+.+.+.++.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67778888899999999998887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-16 Score=158.99 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=119.3
Q ss_pred hcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHH
Q 002834 298 RFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHG 377 (875)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 377 (875)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999999999965 2677799999999999999999999777
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhh
Q 002834 378 YFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT 457 (875)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 457 (875)
...+. .++.. +.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~-i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESY-VETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--Cccch-hHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 76664 22333 778889999999999988877753 66678888888888888888888888765 12
Q ss_pred HHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 458 ILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 458 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
|..++.++.+.|++++|.+.+.++ . ++.+|..++.+|..
T Consensus 151 --------------------------------------~~~LA~~L~~Lg~yq~AVea~~KA--~-~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 151 --------------------------------------FGRLASTLVHLGEYQAAVDGARKA--N-STRTWKEVCFACVD 189 (449)
T ss_dssp --------------------------------------HHHHHHHHHTTTCHHHHHHHHHHH--T-CHHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhccHHHHHHHHHHc--C-CchhHHHHHHHHHH
Confidence 377888888999999999999888 2 78899999999999
Q ss_pred CCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHH
Q 002834 538 CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYV 617 (875)
Q Consensus 538 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 617 (875)
.|+++.|......+. ..+.....++..|.+.|++++|+.+++...... +-....|+.+--+++
T Consensus 190 ~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~--------------- 252 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS--------------- 252 (449)
T ss_dssp TTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH---------------
T ss_pred cCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH---------------
Confidence 999999966665533 333336678888899999999988888875332 111122222221111
Q ss_pred HHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 618 IRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
-.+-+++.+.++.|..-.. .+...|..++..|...++++.|..+
T Consensus 253 -----------------ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 253 -----------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp -----------------TTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------hcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1234556666666664443 2456788888888888888888763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-14 Score=154.59 Aligned_cols=316 Identities=11% Similarity=-0.017 Sum_probs=262.2
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcccHHHHHHHhhc----CCChHHHHHHHHhhhcCCCc-cHHHHHH
Q 002834 494 NIGNAILDAYAK----CRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN----CGSADEAFMTFSRIYARDLT-PWNLMIR 564 (875)
Q Consensus 494 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~l~~ 564 (875)
..+..+...|.. .+++++|...|++.....+...+..+...|.. .+++++|...|++....+.. .+..|..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344566777777 89999999999998877678888888888887 88999999999998776543 3888888
Q ss_pred HHHH----cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc----ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 565 VYAE----NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ----MASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 565 ~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
.|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.+ ++.....+..+|.
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYY 230 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 8887 789999999999998875 55666666666766 789999999999888765 5567777888887
Q ss_pred h----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc---
Q 002834 637 K----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA--- 704 (875)
Q Consensus 637 ~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~--- 704 (875)
. .+++++|...|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 8999999999998665 567788888888888 899999999999998764 445666667777776
Q ss_pred --CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 002834 705 --GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG---QISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEV 775 (875)
Q Consensus 705 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 775 (875)
++.++|.++|++..+ . -+...+..+..+|...| ++++|++++++.....++..+..|...+.. .+|.
T Consensus 308 ~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp BCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 899999999999977 2 24567778888888767 789999999988645678889999999988 7999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++|...++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+
T Consensus 384 ~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999998864 67889999999999 899999999988887755
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-16 Score=163.58 Aligned_cols=257 Identities=10% Similarity=0.010 Sum_probs=182.6
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+...|..+...+.+.|++++|...|+++...++.. |..+..+|...|++++|+..|+++.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------------- 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 34456666777766666666666666664433322 666666666666666666666665543
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-----------ChhhHHHHHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-----------DVVMLTAMIGGYA 667 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~li~~~~ 667 (875)
.+.+...+..++..|.+.|++++|...|+++.+ | ....+..+...+.
T Consensus 129 --------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 129 --------------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred --------------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 333344445555566666666666666655443 1 1223445578888
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHH
Q 002834 668 MHGMGKAALKVFSDMLELGVN-PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 745 (875)
..|++++|+..|+++.+.... ++..++..+...+...|++++|.++|+++.+ ..| +...|..++.+|...|++++
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999985321 1577888888899999999999999999987 344 46689999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------------CccHHHHHHHHHhcCCchh
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------------IGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~ 811 (875)
|++.++++. ..| +..+|..+..++...|+++.|...+++++++.|++ ...+..++.++...|+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 999999874 445 57889999999999999999999999999999873 5678899999999999999
Q ss_pred HHHHHHH
Q 002834 812 VVEIRKL 818 (875)
Q Consensus 812 A~~~~~~ 818 (875)
+.++.++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9887653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=163.53 Aligned_cols=284 Identities=13% Similarity=0.032 Sum_probs=217.1
Q ss_pred HHcCCchHHHH-HHHHHHHCCC-CC--CcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHH
Q 002834 567 AENDFPNQALS-LFLKLQAQGM-KP--DAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIF 642 (875)
Q Consensus 567 ~~~~~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 642 (875)
.-.|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+..+.+...+..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 44577788877 7765443211 11 34567778888999999999999999999998888899999999999999999
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHH---------------HHHHHhh
Q 002834 643 SASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITA---------------VLSACSH 703 (875)
Q Consensus 643 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~a~~~ 703 (875)
+|...|+++.+ .+..+|..+...|...|++++|++.++++.+. .|+... +.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999997654 56789999999999999999999999999985 344322 211 2444448
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
.|++++|..+|+++.+.....++...+..++.+|.+.|++++|++.++++. ..| +..+|..+...+...|+++.|+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998842222246789999999999999999999999874 344 568899999999999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSI 861 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 861 (875)
++++++++|+++..+..++.+|...|++++|.+.++....... ..... ....+|....++..+..
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~-------------~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR--KSRGP-------------RGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--TC-------------------CCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCCCc-------------cccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999998887765321 11100 01135666777777776
Q ss_pred HHHHHH
Q 002834 862 LDEQIK 867 (875)
Q Consensus 862 l~~~~~ 867 (875)
+...+.
T Consensus 339 ~~~~~g 344 (368)
T 1fch_A 339 ALSMLG 344 (368)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 665554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=157.90 Aligned_cols=256 Identities=13% Similarity=0.035 Sum_probs=183.1
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+...+..+...+...|++++|..+|+++...++.. +..+..+|...|++++|...|+++.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 34455666666666666666666666664433322 555666666666666666666666553
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHH--------------H
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAM--------------I 663 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i 663 (875)
.+.+...+..+...|...|++++|.+.|+++.+ | +...+..+ .
T Consensus 85 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 85 --------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred --------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 222333444444555555555555555554332 1 11122222 2
Q ss_pred H-HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC
Q 002834 664 G-GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG 741 (875)
Q Consensus 664 ~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 741 (875)
. .+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+. .|+ ...+..++.++.+.|
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcC
Confidence 2 3667788999999999998853 446677888888999999999999999999873 444 568899999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC------------CCccHHHHHHHHHhcC
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD------------NIGNYVVMSNLYAADA 807 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 807 (875)
++++|.+.++++. ..| +...|..+..++...|+++.|...++++++..|+ ++..+..++.+|...|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999999998874 334 5688999999999999999999999999999999 7888999999999999
Q ss_pred CchhHHHHHHH
Q 002834 808 RWDGVVEIRKL 818 (875)
Q Consensus 808 ~~~~A~~~~~~ 818 (875)
++++|.++++.
T Consensus 301 ~~~~A~~~~~~ 311 (327)
T 3cv0_A 301 RPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHTTC
T ss_pred CHHHHHHHHHH
Confidence 99999998653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=160.08 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=171.4
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
...|+++.|...++.+.+..+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 3333333333333333333333555667888899999999999999998764 4678999999999999999999999
Q ss_pred HHHHHHCCCCCChh-h----------HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 002834 679 FSDMLELGVNPDHV-V----------ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAY 747 (875)
Q Consensus 679 ~~~m~~~g~~p~~~-~----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 747 (875)
|+++.+. .|+.. . +..+...+...|++++|.++|+++.+.....++...+..++.+|.+.|++++|+
T Consensus 156 ~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 156 LKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999984 44422 2 233467889999999999999999884322225678999999999999999999
Q ss_pred HHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 748 SLVNRMP-V-EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 748 ~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.++++. . +.+..+|..+..++...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999984 3 446789999999999999999999999999999999999999999999999999999998887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=153.53 Aligned_cols=399 Identities=12% Similarity=0.053 Sum_probs=234.6
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|..+|..++. +.+.|+++.|+.+|+.+.+ | +...|..++..+.+.|++++|..+|++..... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 7888988888 4788999999999999875 3 45578889999999999999999999998853 77766666654
Q ss_pred HH-hccCChhhHHH----HHHHHHhc-CCCCchhhHHHHHHHHHhc---------CCChhHHHHHHHhcCC-CCc---ch
Q 002834 362 AC-AYLKNLKVGKE----IHGYFLRH-PYLEEDAAVGNALVSFYAK---------CSDMEAAYRTFLMICR-RDL---IS 422 (875)
Q Consensus 362 ~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~ 422 (875)
.. ...|+.+.+++ +++..+.. |..++...+|...+....+ .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 32 34577776665 66665543 5555555577777776654 6788899999988754 221 22
Q ss_pred HHHHHHH---H----------hccCChhHHHHHHHHHH------HCC---CCCChh-hHHHHHHHhhccCchhhHHHHHH
Q 002834 423 WNSMLDA---F----------SESGYNSQFLNLLNCML------MEG---IRPDSI-TILTIIHFCTTVLREGMVKETHG 479 (875)
Q Consensus 423 ~~~li~~---~----------~~~g~~~~a~~~~~~m~------~~g---~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~ 479 (875)
|...... + ...+++..|..+++++. +.. +.|+.. .+..
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~------------------- 228 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ------------------- 228 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH-------------------
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH-------------------
Confidence 3222111 0 12334555555555422 111 122210 0000
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhc----CCH----HHHHHHHHhhccC-C-CcccHHHHHHHhhc-------CCChH
Q 002834 480 YLIKTGLLLGDTEHNIGNAILDAYAKC----RNI----KYAFNVFQSLLEK-R-NLVTFNPVISGYAN-------CGSAD 542 (875)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~-------~~~~~ 542 (875)
....+...+...... ++. .++..+|++.... | +...|..++..+.+ .|+++
T Consensus 229 ------------~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 229 ------------QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp ------------HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred ------------HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 011222222111110 111 2344444433332 2 33344444444432 34443
Q ss_pred -------HHHHHHHhhhc-CCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc--chHhcHHHHhhcccchHH
Q 002834 543 -------EAFMTFSRIYA-RDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA--VTIMSLLPVCSQMASVHL 609 (875)
Q Consensus 543 -------~A~~~~~~~~~-~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~~~~~~ 609 (875)
+|..++++... ..+.. |..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|+.+.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHH
Confidence 45555555443 22221 445555555666666666666665552 3332 244455555555566666
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHH-hHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHL-YAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
|..++..+.+..+.+...+...+.+ +...|+.++|..+|++..+ .+...|..++..+.+.|+.++|..+|++....
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6666666655443333333222222 3357888888888887654 35678888888888899999999999998886
Q ss_pred C-CCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 686 G-VNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 686 g-~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
+ ..|+ ...|...+......|+.+.+.++++++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2332 336766777777889999999999988774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=145.67 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=153.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC-----CccHHHHHHHHHHcCC
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD-----LTPWNLMIRVYAENDF 571 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 571 (875)
..+..+|...|+++.|+..++.. ..|+..++..+...+...++.++|++.++++...+ +..+..+..+|.+.|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 34456666677777776655442 22355566666666667777777777777664322 1125566667777777
Q ss_pred chHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccC
Q 002834 572 PNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCH 651 (875)
Q Consensus 572 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (875)
+++|++.+++ |+ +...+..++..|.+.|++++|.+.|+++
T Consensus 117 ~~~Al~~l~~-------~~---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 117 PDAALRTLHQ-------GD---------------------------------SLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHTT-------CC---------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CC---------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777765 21 1122234445555666666666666655
Q ss_pred CC--CChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC
Q 002834 652 PQ--KDVVM---LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT 726 (875)
Q Consensus 652 ~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 726 (875)
.+ |+... ...++..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+ ..|+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p~ 232 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---KDSG 232 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 43 33211 122333344558999999999999987 466778888899999999999999999999987 4564
Q ss_pred -hhHHHHHHHHhhcCCChHH-HHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 727 -PEQYASLVDLLARGGQISD-AYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 727 -~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..++..++.++...|+.++ +.++++++. ..|+..... ....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHH
Confidence 5589999999999999976 568888774 566554322 22334445555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-14 Score=147.09 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHH
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAE 568 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 568 (875)
..+..+...+...|++++|..+|+++... | +..+|..+...+...|++++|...++++...++.. +..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34456667778888888888888877653 3 55677778888888888888888888876554433 7788888899
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHH--------------H--HhhcccchHHHHHHHHHHHHhcCCCchHHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLL--------------P--VCSQMASVHLLRQCHGYVIRACFDGVRLNGALL 632 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll--------------~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 632 (875)
.|++++|+..++++.+. .|+.......+ . .+...|+.+.|...+..+.+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 170 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN--------- 170 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT---------
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC---------
Confidence 99999999999998875 33332222111 1 134444444444444444444333
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+
T Consensus 171 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 171 ----------------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455556666666666666666666666531 2234455555666666666666666
Q ss_pred HHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCChhH
Q 002834 713 IFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-------------CNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 713 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~ 777 (875)
.|+++.+ ..|+ ...+..++.++.+.|++++|.+.++++. ..|+ ...|..+..++...|+.+.
T Consensus 228 ~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 228 AYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 6666655 2232 4456666666666666666666666552 2222 4566666667777777777
Q ss_pred HHHHHHHHhcccCC
Q 002834 778 GRVVANRLFEMEAD 791 (875)
Q Consensus 778 a~~~~~~~~~~~p~ 791 (875)
|...++++++..|+
T Consensus 305 A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 305 VELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhcch
Confidence 77777766665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=139.60 Aligned_cols=191 Identities=12% Similarity=0.058 Sum_probs=156.2
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLS 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 699 (875)
+...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 556677788889999999999999997654 46678999999999999999999999999985 454 566777888
Q ss_pred HHhhc-----------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 002834 700 ACSHA-----------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLL 766 (875)
Q Consensus 700 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 766 (875)
++... |++++|...|++..+ +.|+ ...+..++.+|...|++++|++.+++.. ...++..|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 89999 999999999999987 5665 4588999999999999999999999874 227788999999
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
.++...|+++.|+..++++++++|+++..+..++.+|...|++++|++.++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-16 Score=173.89 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=129.2
Q ss_pred CCCCchhhhHHHHHHHccCCchHHHHhhccC-------CCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCc
Q 002834 74 HISCQAVSKALLNLYAKCGVIDDCYKLFGQV-------DNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNS 146 (875)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 146 (875)
......+||+||++|++.|++++|..+|++| ..||+++||+||.+|++.| +.++|.++|++|.+.| +.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G-~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAG-LTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CCCcH
Confidence 3344568999999999999999999999775 3689999999999999999 9999999999999999 99999
Q ss_pred chHHHHHHHhhccCCc-chhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC-----CCeeeHHHHHH
Q 002834 147 VTVAIVLSACARLGGI-FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED-----KDVVSWNAVIS 220 (875)
Q Consensus 147 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~ 220 (875)
.||++||.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+++..+.- +.+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 78899999999999999999999999988887666666555555432 23455666677
Q ss_pred HHHcCC
Q 002834 221 GLSENK 226 (875)
Q Consensus 221 ~~~~~g 226 (875)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-12 Score=144.45 Aligned_cols=148 Identities=10% Similarity=-0.034 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHhhcCcHHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV--VITAVLS-ACSHAGLVDEGLEIF 714 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~a~~~~ 714 (875)
.+.|...|++..+ .+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|++.|
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455555554332 345678888888999999999999999988854333221 2223332 345788999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
++..+ +.|+........ ..+.++++... .+.++.+|..+..++...|++++|++.++++++++|.+
T Consensus 396 ~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 396 IEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 99877 677654333222 22333333331 23466889999999999999999999999999999999
Q ss_pred CccHHHHH
Q 002834 793 IGNYVVMS 800 (875)
Q Consensus 793 ~~~~~~l~ 800 (875)
|.++..+|
T Consensus 464 p~a~~~~G 471 (472)
T 4g1t_A 464 PSASSWNG 471 (472)
T ss_dssp --------
T ss_pred CcHhhcCC
Confidence 98776655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-15 Score=167.00 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=109.6
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHP-------QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITA 696 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 696 (875)
...++++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45578999999999999999999996643 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHH
Q 002834 697 VLSACSHAGL-VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 697 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
+|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999997 5789999999988 79999999999998776665544444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=136.78 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=170.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
|..+...+...|++++|+..|++..+.. .+...+..+. ..|...
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~----------------------------------~~~~~~ 51 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRA----------------------------------AAEYEK 51 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHH----------------------------------HHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHH----------------------------------HHHHHc
Confidence 6677788888888888888888877665 4444444444 445555
Q ss_pred CCHHHHHHHhccCCC--C----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH
Q 002834 639 GSIFSASKIFQCHPQ--K----D----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 708 (875)
|++++|...|++..+ | + ..+|..+...|...|++++|+..|++..+. .|+. ..+...|+++
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAE 122 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHH
Confidence 555555555554432 1 1 467888889999999999999999999884 5553 3466778899
Q ss_pred HHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
+|.+.++++.. ..|+ ...+..++.++...|++++|.+.++++. .+.+..+|..+..++...|+++.|+..++++
T Consensus 123 ~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999877 4555 4488889999999999999999999884 3446788999999999999999999999999
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=137.96 Aligned_cols=239 Identities=8% Similarity=-0.085 Sum_probs=171.6
Q ss_pred hhcCCChHHHHHHHHhhhcCC-------CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch
Q 002834 535 YANCGSADEAFMTFSRIYARD-------LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607 (875)
Q Consensus 535 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~ 607 (875)
....+++++|+..++++.... ...|..+...|...|++++|+..|+++.+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------- 71 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA----------------------- 71 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------------
Confidence 344455666666666654431 11155555555666666666666655554
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
..+.+...+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..|+++.+
T Consensus 72 ------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 72 ------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333455566677778888888888888887654 3567889999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-----
Q 002834 685 LGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----- 758 (875)
Q Consensus 685 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----- 758 (875)
. .|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|.+.+++.. ..|+
T Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 140 D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred h--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 4 566665555666667889999999999888773 33343444 47778888889999999998874 3332
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
...|..+...+...|+++.|...++++++++|++.. ..+.++...|++++|++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 477888899999999999999999999999998754 4477888899999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=129.26 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=119.2
Q ss_pred HHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc--hHhcHHHHhhccc
Q 002834 531 VISGYANCGSADEAFMTFSRIYARDL---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV--TIMSLLPVCSQMA 605 (875)
Q Consensus 531 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~~ 605 (875)
....+...|++++|+..++++.+.++ ..+..+..+|...|++++|+..+++..+.+..|+.. .+..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33444444444444444444433221 124445555566666666666666666532111111 1333333444444
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+.+.|...+..+.+..+.+..++..+...|...|++++|...|+ +..+.
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~al~~ 137 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQIRP 137 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GGCCS
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HHhhc
Confidence 44444444444444433334444444445555555555555554 44432
Q ss_pred CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCC---hHHHHHHHHhCC----CC
Q 002834 686 GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQ---ISDAYSLVNRMP----VE 756 (875)
Q Consensus 686 g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~ 756 (875)
.|+ ...+..+...+...+++++|.+.|+++.+ ..|+ ...+..++.++...|+ +++|...++++. ..
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 222 22233333123333355555555555544 2232 2344444444444444 444444444431 11
Q ss_pred CC------HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 757 AD------CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 757 p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
|+ ..+|..+...+...|+++.|...++++++++|+++.++..++.+....+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 22 1456777888888999999999999999999999988888877665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=135.82 Aligned_cols=237 Identities=11% Similarity=-0.002 Sum_probs=183.0
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCC--CccHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCcchHhcHHHH
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARD--LTPWNLMIRVYAENDFPNQALSLFLKLQAQGM--KPDAVTIMSLLPV 600 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a 600 (875)
...|..+...+...|++++|...|+++...+ +..|..+..+|...|++++|+..+++..+... .|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 4567888899999999999999999986544 33499999999999999999999999876421 111100
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
...++..+...|.+.|++++|...|++... |+ ...+...|++++|+..
T Consensus 78 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 -----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHH
Confidence 123445566777777888888877776554 33 2346667889999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CC
Q 002834 679 FSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VE 756 (875)
Q Consensus 679 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 756 (875)
++++... .|+ ...+..+...+...|++++|.+.|+++.+. .+.+...+..++.+|.+.|++++|.+.++++. ..
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999884 444 456777777899999999999999999873 22345688899999999999999999998874 34
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccc------CCCCccHHHHHHH
Q 002834 757 A-DCNVWGTLLGACRIHHEVELGRVVANRLFEME------ADNIGNYVVMSNL 802 (875)
Q Consensus 757 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 802 (875)
| +...|..+..++...|+.+.|...++++++++ |++...+..++.+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4 56888899999999999999999999999999 7777666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-13 Score=143.32 Aligned_cols=342 Identities=11% Similarity=-0.007 Sum_probs=228.7
Q ss_pred HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNI---KYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 461 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
+-..+.+.|+++.|.+.+....+.|. ++ .+..+...|...|+. ++|...|++.... ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~----~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY----SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC----CT--GGGTCC-----------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC----HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 45566788999999999999988763 22 234455566667777 8999999988877 77777777775555
Q ss_pred CC-----ChHHHHHHHHhhhcCCCc-cHHHHHHHHHHcCCchH---HHHHHHHHHHCCCCCCcchHhcHHHHhhcccchH
Q 002834 538 CG-----SADEAFMTFSRIYARDLT-PWNLMIRVYAENDFPNQ---ALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVH 608 (875)
Q Consensus 538 ~~-----~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~ 608 (875)
.+ ++++|+..|++....+.. .+..|...|...+..++ +...+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 778999999988776544 48888888887766444 4555555554443 345555556666666555
Q ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHhHhcC---CHHHHHHHhccCCC---CChhhHHHHHHHHHHc----CChHHHHH
Q 002834 609 LLRQCHGYVIRACFD-GVRLNGALLHLYAKCG---SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH----GMGKAALK 677 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 677 (875)
.+......+.+.... ++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 444444444444444 6668889999999999 89999999987654 4445557777777654 68999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH-H--hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC-----ChHHHHHH
Q 002834 678 VFSDMLELGVNPDHVVITAVLSA-C--SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG-----QISDAYSL 749 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 749 (875)
+|++.. . -+...+..+... + ...++.++|.++|++..+ .| +...+..|..+|. .| ++++|.++
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999986 3 334455555554 3 568999999999999876 33 5567777888777 45 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHh
Q 002834 750 VNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKT 821 (875)
Q Consensus 750 ~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 821 (875)
+++.. ..++..+..|...|.. .+|.++|...++++.+ +.++.....|+.+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 5567777777766655 3389999999999887 4567888999999985 4588999999888877
Q ss_pred CCC
Q 002834 822 RDL 824 (875)
Q Consensus 822 ~~~ 824 (875)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=139.00 Aligned_cols=242 Identities=9% Similarity=0.005 Sum_probs=179.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccc-hHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMAS-VHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
|..+..++.+.|++++|+..+++..+. .|+ ...|..+..++...|+ ++.|...++.+++..+.+..++..+..+|.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 555556667777777777777777653 344 3345555556666665 777777777777777777778888888888
Q ss_pred hcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh-cCcHHHH--
Q 002834 637 KCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH-AGLVDEG-- 710 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~g~~~~a-- 710 (875)
+.|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 88888888888887664 567788888899999999999999999998852 3345677777777877 5654666
Q ss_pred ---HHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------C-
Q 002834 711 ---LEIFRSIEKVQGIKPT-PEQYASLVDLLARGG--QISDAYSLVNRMPVEAD-CNVWGTLLGACRIHH--------E- 774 (875)
Q Consensus 711 ---~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~--------~- 774 (875)
++.|+++.+ +.|+ ...|..+..+|...| ++++|+++++++...|+ ...+..+..++...| +
T Consensus 257 ~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 257 EREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 578888876 5665 447888888888888 68889988888755554 467777777777653 2
Q ss_pred hhHHHHHHHHH-hcccCCCCccHHHHHHHHHhc
Q 002834 775 VELGRVVANRL-FEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 775 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.++|+++++++ ++++|.....|..++..+..+
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899998888888887766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=139.19 Aligned_cols=375 Identities=8% Similarity=-0.052 Sum_probs=256.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---hhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLRE---GMVKETHGYLIKTGLLLGDTEHNIGNAILDA 502 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 502 (875)
+...+.+.|++++|+++|++..+.|- |+.. ..+-..+...|+. +.|...++...+. ++..+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--GTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 45667788999999999999988763 3332 2222333446666 7888888877743 33445556664
Q ss_pred HHhcC-----CHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChH---HHHHHHHhhhcC-CCccHHHHHHHHHHcCCch
Q 002834 503 YAKCR-----NIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSAD---EAFMTFSRIYAR-DLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 503 ~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 573 (875)
+...+ ++++|...|++.....+...+..|...|...+..+ ++.+.+.+..+. ++..+..|...|...+.++
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 55544 78899999998887656778888888887665533 355555555444 4555889999999999887
Q ss_pred HHHHHHHHHHHCCCCCCcchHhcHHHHhhccc---chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc----CCHHHHHH
Q 002834 574 QALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA---SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC----GSIFSASK 646 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 646 (875)
++........+.-...++..+..+-..+...| +.+.+...+....+.+......+..|..+|... +++++|..
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 77766555444333444457777778888888 999999999999999988777667788888665 79999999
Q ss_pred HhccCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-----cHHHHHHHHHHhH
Q 002834 647 IFQCHPQKDVVMLTAMIGG-Y--AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG-----LVDEGLEIFRSIE 718 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g-----~~~~a~~~~~~~~ 718 (875)
.|++....+..++..|... | ...++.++|+.+|++..+.| +...+..+...|. .| +.++|.++|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9998774466788888887 4 46889999999999999876 5566666666665 55 9999999998874
Q ss_pred HHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccC
Q 002834 719 KVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 719 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 790 (875)
.-+...+..|..+|.. ..++++|..++++.....++.....|...|.. .+|.++|...++++.+..+
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345677778888776 44999999999998645556666677766653 4589999999999999876
Q ss_pred CCCccHHHHHHHHHh--cCCchhHHHHHHHHHh
Q 002834 791 DNIGNYVVMSNLYAA--DARWDGVVEIRKLMKT 821 (875)
Q Consensus 791 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 821 (875)
.++ ...+..+... .++.++|.++.+.++.
T Consensus 390 ~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 PEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 543 3445555333 3467777777666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=129.75 Aligned_cols=196 Identities=10% Similarity=-0.030 Sum_probs=163.6
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777888888999999888887653 466788889999999999999999999988853 33566777788889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a 778 (875)
...|++++|.++++++.+ .+..|+ ...+..++.++...|++++|.+.++++. ..| +...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998866 335554 4578888999999999999999998874 334 567888888899999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=124.64 Aligned_cols=196 Identities=10% Similarity=-0.016 Sum_probs=165.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 556667788888899999999999887653 456788889999999999999999999998853 3456678888889
Q ss_pred Hhhc-CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 701 CSHA-GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 701 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
+... |++++|.++++++.+ .+..|+ ...+..++.++...|++++|.+.++++. ..| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999876 334454 4578889999999999999999998874 344 5688888889999999999
Q ss_pred HHHHHHHHHhcccC-CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEA-DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|...++++++..| .++..+..++.++...|+.++|...++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999 8888999999999999999999999888765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-13 Score=131.33 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=99.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLV 707 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 707 (875)
+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccH
Confidence 33344444444444444443322 234455555556666666666666666665532 22344555555566666666
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 708 DEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
++|.++++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...|..+...+...|+++.|+..++++
T Consensus 108 ~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666552 12234455556666666666666666665553 2224455556666666666666666666666
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666666666666666666666666666555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=137.15 Aligned_cols=222 Identities=9% Similarity=-0.026 Sum_probs=191.4
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCC-HHHHHHHhccCCC---CChhhHHHHHHHHHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS-IFSASKIFQCHPQ---KDVVMLTAMIGGYAM 668 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 668 (875)
.+..+...+...|+.+.|...++.+++..+.+..++..+...|.+.|+ +++|+..|+++.. .+...|+.+..++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355556677788999999999999999999999999999999999997 9999999998765 567899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc-CCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR-GGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A 746 (875)
.|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+ +.|+ ...|..++.+|.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999852 33567788888899999999999999999988 5665 5589999999999 6666887
Q ss_pred -----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC--------C-
Q 002834 747 -----YSLVNRMP-VEA-DCNVWGTLLGACRIHH--EVELGRVVANRLFEMEADNIGNYVVMSNLYAADA--------R- 808 (875)
Q Consensus 747 -----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~- 808 (875)
++.+++.. ..| +...|..+...+...| +++.|...++++ +.+|+++..+..|+++|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47777664 556 5688999999988877 689999999998 999999999999999999985 2
Q ss_pred chhHHHHHHHH
Q 002834 809 WDGVVEIRKLM 819 (875)
Q Consensus 809 ~~~A~~~~~~~ 819 (875)
.++|+++++.+
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=129.68 Aligned_cols=216 Identities=10% Similarity=0.024 Sum_probs=166.8
Q ss_pred CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 002834 589 PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGG 665 (875)
Q Consensus 589 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 665 (875)
.....+..+...+...|+++.|...+..+.+..+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556777778888999999999999999998888889999999999999999999999997654 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|++++|++.++++.+.. +.+...+..+...+...|++++|.++++++.+. .+.+...+..++.++.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999863 446677888888999999999999999999873 23346688999999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 746 AYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 746 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
|.+.++++. .+.+..+|..+..++...|+++.|...++++++++|+++..+..++.+....|
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999874 33457889999999999999999999999999999999988887776655444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=124.34 Aligned_cols=221 Identities=11% Similarity=-0.069 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 557 TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
..+..+...|...|++++|+..|++..+.+ +...+..+...|.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-------------------------------------ENSGCFNLGVLYY 49 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHH
Confidence 346677778888888888888888877622 1223334555666
Q ss_pred h----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----
Q 002834 637 K----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH---- 703 (875)
Q Consensus 637 ~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~---- 703 (875)
. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 50 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 50 QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred cCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 6 7777777777776543 466778888888888 889999999999988864 56677777778888
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEV 775 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 775 (875)
.+++++|.++|++..+ .+ +...+..+..+|.. .+++++|++++++.....++..+..+...+.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 8999999999998877 22 45567778888877 88999999998887533456778888888888 8999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999998866 6678889999998 899999999887776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-12 Score=118.34 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=140.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++.+.|++++|...++.+.. ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 5667889999999999999999999999885 45 456677788899999999999999999877 3444 457788
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++..+...+++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999988874 344 56888889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 002834 811 GVVEIRKLMKTR 822 (875)
Q Consensus 811 ~A~~~~~~~~~~ 822 (875)
+|++.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999988776553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=145.86 Aligned_cols=201 Identities=9% Similarity=-0.066 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhHhcCCH-HHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHLYAKCGSI-FSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+...+.......+.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|...|++++|++.|++..+.
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33333333333333566667777778888888 888888887653 35678999999999999999999999999984
Q ss_pred CCCCChhhHHHHHHHHhhc---------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC--------CChHHHH
Q 002834 686 GVNPDHVVITAVLSACSHA---------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG--------GQISDAY 747 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~ 747 (875)
.|+...+..+..++... |++++|.+.|+++.+ +.|+ ...|..++.+|... |++++|+
T Consensus 167 --~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 167 --CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp --CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 67778888888899999 999999999999987 4555 55889999999988 9999999
Q ss_pred HHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 748 SLVNRMP-VEA----DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 748 ~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
+.+++.. ..| ++..|..+..++...|+++.|...++++++++|+++..+..++.++...|++++|++.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999885 455 6788999999999999999999999999999999999999999999999999999974
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-12 Score=126.45 Aligned_cols=225 Identities=12% Similarity=0.003 Sum_probs=170.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+......+...|++++|+..|++..+. .|+ +...+..+...|...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~---------------------------------~~~~~~~l~~~~~~~ 50 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYN---------------------------------SPYIYNRRAVCYYEL 50 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCC---------------------------------CSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC---------------------------------cHHHHHHHHHHHHHH
Confidence 445566666667777777776666653 232 333445566677777
Q ss_pred CCHHHHHHHhccCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ--KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
|++++|...|++..+ ++ ..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+
T Consensus 51 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 888888777776543 22 2348889999999999999999999999852 3345678888889999999999999
Q ss_pred HHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHh
Q 002834 713 IFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHE---VELGRVVANRLF 786 (875)
Q Consensus 713 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 786 (875)
.|+++.+ ..|+ ...+..++..+...+++++|.+.++++. ..| +...|..+..++...|+ .+.|+..+++++
T Consensus 130 ~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 130 YMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 9999866 4565 4477778834444569999999999885 445 46778888888888888 888999999999
Q ss_pred ccc---CCC-----CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 787 EME---ADN-----IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 787 ~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++. |+. ...|..+|.+|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 886 442 247888999999999999999988877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=121.91 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544332 233445555555555555555555555555543 444455555555555555555555555
Q ss_pred HhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 716 SIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 716 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
++.+ ..|+ ...+..++.++.+.|++++|.+.+++.
T Consensus 176 ~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5544 2333 234555555555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-11 Score=121.60 Aligned_cols=150 Identities=10% Similarity=-0.044 Sum_probs=112.8
Q ss_pred cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCcHH
Q 002834 638 CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----AGLVD 708 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~ 708 (875)
.+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .++++
T Consensus 91 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 245567777777887 889999999999988865 45566667777777 88999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRV 780 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 780 (875)
+|.++|++..+. .+...+..+..+|.. .|++++|++++++.....+...+..+...+.. .++.++|..
T Consensus 168 ~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 168 KALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 999999988772 245677788888888 99999999999887533346778888888888 899999999
Q ss_pred HHHHHhcccCCCCc
Q 002834 781 VANRLFEMEADNIG 794 (875)
Q Consensus 781 ~~~~~~~~~p~~~~ 794 (875)
.++++++++|+++.
T Consensus 244 ~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 244 NFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999886543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-12 Score=124.98 Aligned_cols=201 Identities=10% Similarity=0.038 Sum_probs=156.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
|..+...|...|++++|+..|+++.+.. |+ +...+..+...|.+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~---------------------------------~~~~~~~la~~~~~~ 84 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID--PS---------------------------------SADAHAALAVVFQTE 84 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT---------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CC---------------------------------hHHHHHHHHHHHHHc
Confidence 7777778888888888888888876542 22 233445556667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.+..|+ ...+..+..++...|++++|.+++
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 3567788888889999999999999999887434554 456777777899999999999999
Q ss_pred HHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 715 RSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 715 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+++.+. .| +...+..++.++...|++++|.+.++++. ..| +...+..+...+...|+.+.|.+.+++++++.|+
T Consensus 165 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 165 EKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 998773 34 35688899999999999999999998874 334 5677888888889999999999999999999999
Q ss_pred CCccHH
Q 002834 792 NIGNYV 797 (875)
Q Consensus 792 ~~~~~~ 797 (875)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 876544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=139.87 Aligned_cols=264 Identities=13% Similarity=0.043 Sum_probs=177.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHhhhcCCCc-------cHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHH
Q 002834 527 TFNPVISGYANCGSADEAFMTFSRIYARDLT-------PWNLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLL 598 (875)
Q Consensus 527 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll 598 (875)
.+..+...+...|++++|...|+++...++. .|..+..+|...|++++|+..+++..+..-. .+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 3444555666677777777777666544333 2556666666677777777666665432000 00
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHHHc
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---------KDVVMLTAMIGGYAMH 669 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~ 669 (875)
.+.....+..+...|...|++++|...|++... ....+|..+...|...
T Consensus 122 ----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 122 ----------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000334455666667777777777777765443 1234677788888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-
Q 002834 670 GM-----------------GKAALKVFSDMLEL----GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT- 726 (875)
Q Consensus 670 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 726 (875)
|+ +++|++.+++..+. +..|. ..++..+...+...|++++|.++++++.+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888888776542 11121 235666777888899999999999888763221122
Q ss_pred ---hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC--
Q 002834 727 ---PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-- 793 (875)
Q Consensus 727 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-- 793 (875)
...+..++.+|...|++++|.+.+++.. ...+ ..++..+...+...|+++.|...+++++++.++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2277888899999999999999887763 1111 35677788888899999999999999998866543
Q ss_pred ----ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 794 ----GNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 794 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..+..++.+|...|++++|.+.++...
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 378889999999999999999776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=120.65 Aligned_cols=203 Identities=9% Similarity=-0.053 Sum_probs=153.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...+...|++++|+..|+++.+. .+.+...+..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~ 55 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPKNELAWLVRAEIYQYL 55 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------CccchHHHHHHHHHHHHc
Confidence 566666777777777777777766553 222333445566667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
|++++|.+.|++..+ .+..+|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++|.+.
T Consensus 56 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777776543 3566788888889999 999999999999888433444 45677777789999999999999
Q ss_pred HHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 714 FRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VE--ADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 714 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++++.+. .|+ ...+..++.++.+.|++++|.+.++++. .. .+...+..+...+...|+.+.+...++.+.+.+
T Consensus 136 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 136 LKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9998773 344 5688889999999999999999998874 33 455667666677788999999999999999999
Q ss_pred CCCCccHHHH
Q 002834 790 ADNIGNYVVM 799 (875)
Q Consensus 790 p~~~~~~~~l 799 (875)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9988766554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=130.85 Aligned_cols=216 Identities=11% Similarity=-0.032 Sum_probs=173.4
Q ss_pred hcccchHHHHHHHHHHHHhcC---C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHH
Q 002834 602 SQMASVHLLRQCHGYVIRACF---D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKA 674 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 674 (875)
...++++.|...+..+.+... + +..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 344666666666666665532 2 566778888999999999999999998664 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
|+..|+++.+.. +.+...+..+..++...|++++|.++|+++.+ ..|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999852 33567788888899999999999999999987 45665555555566677899999999997663
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC----CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 755 --VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN----IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 755 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.+++...| .++..+...++.+.|...++++++..|.. +..+..+|.+|...|++++|.+.++.....
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 33444444 46677778888999999999999988753 678999999999999999999999887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-12 Score=135.49 Aligned_cols=286 Identities=11% Similarity=-0.009 Sum_probs=149.9
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-cc
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQALSLFLKLQAQ----GMKPD-AV 592 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~ 592 (875)
...+......+...|++++|...|+++...++.. |..+...|...|++++|+..+++.... +-.|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445566677888888888888888875544332 667778888888888888888876432 11111 22
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCC------CchHHHHHHHHhHhcCC--------------------HHHHHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFD------GVRLNGALLHLYAKCGS--------------------IFSASK 646 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~--------------------~~~A~~ 646 (875)
++..+...+...|+++.|...+..+.+.... ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444455555666666666666555543222 13345555555555555 555555
Q ss_pred HhccCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHH
Q 002834 647 IFQCHPQ-----K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 647 ~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.+++... . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5543321 1 122455555555555555555555555543210 011 1134444445555555555555
Q ss_pred HHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 002834 713 IFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 713 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
+++++.+...-.++ ...+..++.+|...|++++|.+.+++.. ..++ ..++..+...+...|+++.|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555432111111 2244555555555555555555555441 1111 2344445555555555555555
Q ss_pred HHHHHhcccCCCCc------cHHHHHHHHHhcCCch
Q 002834 781 VANRLFEMEADNIG------NYVVMSNLYAADARWD 810 (875)
Q Consensus 781 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 810 (875)
.+++++++.+.... .+..++.+|...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 55555555555422 3344444444444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=139.36 Aligned_cols=264 Identities=9% Similarity=-0.021 Sum_probs=179.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cccHHHHHHHhhcCCChHHHHHHHHhhhcC----C----
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-----LVTFNPVISGYANCGSADEAFMTFSRIYAR----D---- 555 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---- 555 (875)
......+......+...|++++|...|++.... |+ ..+|..+...|...|++++|...++++... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 334445566677778888888888888877653 32 246677777888888888888888776322 1
Q ss_pred -CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CC----cchHhcHHHHhhcccc--------------------hHH
Q 002834 556 -LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMK-PD----AVTIMSLLPVCSQMAS--------------------VHL 609 (875)
Q Consensus 556 -~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~a~~~~~~--------------------~~~ 609 (875)
...+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 112777788888888888888888876543111 12 2356666667777788 888
Q ss_pred HHHHHHHHHHhcC-----C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHH
Q 002834 610 LRQCHGYVIRACF-----D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKA 674 (875)
Q Consensus 610 a~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 674 (875)
|...+....+... + ....+..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 8777776655411 1 345667778888888888888888876553 22 2367778888888888888
Q ss_pred HHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHH
Q 002834 675 ALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISD 745 (875)
Q Consensus 675 A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 745 (875)
|+..+++..+... .++ ..++..+...+...|++++|.++++++.+...-.++ ...+..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888887765310 011 345666777788888888888888887653222222 3467778888888888888
Q ss_pred HHHHHHhC
Q 002834 746 AYSLVNRM 753 (875)
Q Consensus 746 A~~~~~~~ 753 (875)
|.+.+++.
T Consensus 326 A~~~~~~a 333 (406)
T 3sf4_A 326 AMHFAEKH 333 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=131.66 Aligned_cols=262 Identities=12% Similarity=0.032 Sum_probs=178.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHh
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVC 601 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 601 (875)
......+...|++++|...++++...++.. +..+...|...|++++|+..+++..+..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 334445555666666666666554332221 4455555556666666666555543210
Q ss_pred hcccchHHHHHHHHHHHHhc-CC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcC
Q 002834 602 SQMASVHLLRQCHGYVIRAC-FD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHG 670 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 670 (875)
.+.+ .+ ...++..+...|...|++++|...+++..+ ++ ..++..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 0001 01 234556667777788888888877776443 22 237778888888888
Q ss_pred C--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC
Q 002834 671 M--------------------GKAALKVFSDMLEL----GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP 725 (875)
Q Consensus 671 ~--------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 725 (875)
+ +++|+..+++..+. +..|. ...+..+...+...|++++|.++++++.+...-.+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888876542 11122 23566777788999999999999998875322112
Q ss_pred C----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 726 T----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 726 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+ ...+..++.++...|++++|.+.+++.. ..++ ..++..+...+...|+++.|...+++++++.|...
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 2 2378888999999999999999988763 1122 45677788889999999999999999999876543
Q ss_pred ------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 ------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..++.+|...|++++|.+.+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3788899999999999999998887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=138.64 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
+..+|+.|...|...|++++|++.|++.++. .|+ ...+..+..++.+.|++++|++.|+++.+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3567899999999999999999999999984 555 56788888899999999999999999987 5676 458999
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|++.++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998874 556 46889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 002834 811 GVVEIRKLMK 820 (875)
Q Consensus 811 ~A~~~~~~~~ 820 (875)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998766554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=115.02 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=142.1
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
+..++..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456788889999999999999999998664 467789999999999999999999999998852 3345566666778
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 777 (875)
+...++++.|.+.+++..+ ..|+ ...+..++.+|.+.|++++|++.+++.. ..| ++.+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999977 3454 5588899999999999999999999884 445 56889999999999999999
Q ss_pred HHHHHHHHhcccCCCC
Q 002834 778 GRVVANRLFEMEADNI 793 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~ 793 (875)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-11 Score=115.62 Aligned_cols=152 Identities=10% Similarity=-0.016 Sum_probs=111.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 733 (875)
|+..|..+...+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+ ..|+. ..|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 45667777777778888888888888877754336666666666777788888888888887766 45553 477777
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CH-------HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHH
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DC-------NVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNL 802 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 802 (875)
+.+|...|++++|++.+++.. ..| +. ..|..+...+...|+++.|+..++++++++|+ ++..+..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 888888888888888777763 333 33 34666667777778888888888888888888 77788888888
Q ss_pred HHhcCCc
Q 002834 803 YAADARW 809 (875)
Q Consensus 803 ~~~~g~~ 809 (875)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777777
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-11 Score=130.66 Aligned_cols=268 Identities=12% Similarity=0.039 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-c----ccHHHHHHHhhcCCChHHHHHHHHhhhcC----C-----Ccc
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-L----VTFNPVISGYANCGSADEAFMTFSRIYAR----D-----LTP 558 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~ 558 (875)
..+..+...+...|++++|...|++.... |+ . ..|..+...|...|++++|...++++... + ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456677889999999999999988764 43 2 46888889999999999999999887432 1 122
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK 637 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 637 (875)
+..+...|...|++++|+..+++..+.... .+... ....+..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS------------------------------EGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH------------------------------HHHHHHHHHHHHHH
Confidence 888999999999999999999887653100 00000 11223344445555
Q ss_pred cCC-----------------HHHHHHHhccCCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 002834 638 CGS-----------------IFSASKIFQCHPQ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PD 690 (875)
Q Consensus 638 ~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 690 (875)
.|+ +++|.+.+++..+ ....+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 5555555544322 12346778888899999999999999888763111 11
Q ss_pred ----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC
Q 002834 691 ----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD 758 (875)
Q Consensus 691 ----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~ 758 (875)
...+..+...+...|++++|.++++++.+...-..+ ...+..++.+|...|++++|.+.+++.. ..++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 226777788899999999999999988764221111 4578889999999999999999998873 1111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 759 ----CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 759 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..++..+..++...|+.+.|...+++++++.++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346778888899999999999999999988653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-11 Score=126.05 Aligned_cols=163 Identities=9% Similarity=0.044 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC-h
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT-P 727 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~ 727 (875)
.+++.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|.+.+++..+.. +..|. .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3566666677777777777777766654210 011 1255666667777777777777777665421 22133 3
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHHhcCC---hhHHHHHHHHHhcccCCCCccHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP------VEADC-NVWGTLLGACRIHHE---VELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.++..++.+|.+.|++++|.+.+++.. ..|.. ..+..+...+...|+ .+.|...+++. ...|.....+.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 366777777777777777777776652 12211 223445555556666 66666666655 33344455677
Q ss_pred HHHHHHHhcCCchhHHHHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+|.+|...|++++|.+.++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888665553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=117.91 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRA-CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVV-MLTAMIGGYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 608 ~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 682 (875)
+.|..+++.+++. .+.+..++..++..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555552 444555555555555555555555555555443 2 222 4555555555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHh-hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC----CC
Q 002834 683 LELGVNPDHVVITAVLSACS-HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP----VE 756 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 756 (875)
.+.+ +++...|........ ..|+.++|.++|+++.+. .| +...|..++..+.+.|++++|..++++.. .+
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 5532 122222222221111 245555555555555542 12 23345555555555555555555555542 13
Q ss_pred C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 757 A--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 757 p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
| ....|..++......|+.+.|..+++++++..|+++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 2 234555555555555555555555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=124.75 Aligned_cols=267 Identities=10% Similarity=0.002 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cccHHHHHHHhhcCCChHHHHHHHHhhhcC----C-----CccH
Q 002834 495 IGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-----LVTFNPVISGYANCGSADEAFMTFSRIYAR----D-----LTPW 559 (875)
Q Consensus 495 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~~ 559 (875)
.+......+...|++++|...|++.... |+ ...+..+...+...|++++|...++++... + ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567788999999999999988764 43 356778889999999999999999886332 1 1227
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
..+...|...|++++|...+++..+.... ++... ...++..+...|...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------------------------EARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH------------------------------HHHHHHHHHHHHHHc
Confidence 88889999999999999999887653111 11110 011223333444444
Q ss_pred CC--------------------HHHHHHHhccCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 002834 639 GS--------------------IFSASKIFQCHPQ-----K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-N 688 (875)
Q Consensus 639 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 688 (875)
|+ +++|.+.+++... + ...++..+...+...|++++|+..+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44 4555444443221 1 134677788888889999999999888765310 1
Q ss_pred CC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CC
Q 002834 689 PD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VE 756 (875)
Q Consensus 689 p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 756 (875)
++ ..++..+...+...|++++|.+++++..+...-.++ ...+..++.++...|++++|...++++. ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 236677777889999999999999988763222222 4477888999999999999999988763 11
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 757 AD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 757 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
++ ..++..+...+...|+++.|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778888899999999999999999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-09 Score=115.91 Aligned_cols=425 Identities=11% Similarity=0.019 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCC---hhHHHH
Q 002834 334 LKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSD---MEAAYR 410 (875)
Q Consensus 334 ~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 410 (875)
.+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++..- |.....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455555555554 3577788888888888888888888888887763 3333367777777777777 888888
Q ss_pred HHHhcCC-----CCcchHHHHHHHHhccCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHhhccCchhhH
Q 002834 411 TFLMICR-----RDLISWNSMLDAFSESGYN--------SQFLNLLNCMLM-EGI-RPDS-ITILTIIHFCTTVLREGMV 474 (875)
Q Consensus 411 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~~~~~~~a 474 (875)
+|++... +++..|...+.-..+.++. +.+.++|+..+. -|. .|++ ..|...+..........
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~-- 202 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN-- 202 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS--
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC--
Confidence 8877633 5566666666544444332 223345554333 344 4433 33444343322110000
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc---ccHH---HHHHHh----------hcC
Q 002834 475 KETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNL---VTFN---PVISGY----------ANC 538 (875)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~---~~~~---~l~~~~----------~~~ 538 (875)
.+...++++.+.++|+....-|.. .+|. .+...+ -..
T Consensus 203 ---------------------------~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~ 255 (679)
T 4e6h_A 203 ---------------------------KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 255 (679)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHH
T ss_pred ---------------------------cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhh
Confidence 000122234444444444433311 1111 111000 001
Q ss_pred CChHHHHHHHHhh-------h---cCC---------C----------ccHHHHHHHHHHcCC-------chHHHHHHHHH
Q 002834 539 GSADEAFMTFSRI-------Y---ARD---------L----------TPWNLMIRVYAENDF-------PNQALSLFLKL 582 (875)
Q Consensus 539 ~~~~~A~~~~~~~-------~---~~~---------~----------~~~~~l~~~~~~~~~-------~~~A~~~~~~m 582 (875)
.+++.|...+.++ . +.. + ..|...+..--..+. .+.+..+|++.
T Consensus 256 ~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 256 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 1223333333332 1 000 0 014555544333221 23345677777
Q ss_pred HHCCCCCCcchHhcHHHHhhcccchHHHH-HHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------
Q 002834 583 QAQGMKPDAVTIMSLLPVCSQMASVHLLR-QCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------- 653 (875)
Q Consensus 583 ~~~g~~p~~~~~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 653 (875)
... ..-....+.....-+...|+.+.+. .+++.++...+.+..++-..+....+.|+++.|.++|+++..
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 654 2234455666666666778888886 999999887777888888889999999999999999987653
Q ss_pred -----CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh-cCcHHHHHHHHH
Q 002834 654 -----KD------------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH-AGLVDEGLEIFR 715 (875)
Q Consensus 654 -----~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~ 715 (875)
|+ ...|-..+....+.|..+.|..+|.+..+.-..+....|......-.+ .++.+.|.++|+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236778888888888999999999999875111223333322222223 356899999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 716 SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA----DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 716 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
...+.+.- +...+...++.+...|+.+.|..+|+... ..| ....|..++..-..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 98885332 34456677787888899999999999874 233 237788888888899999999999999999999
Q ss_pred CCCc
Q 002834 791 DNIG 794 (875)
Q Consensus 791 ~~~~ 794 (875)
+++.
T Consensus 573 ~~~~ 576 (679)
T 4e6h_A 573 EVNK 576 (679)
T ss_dssp TCCH
T ss_pred CCcH
Confidence 8764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-10 Score=115.55 Aligned_cols=211 Identities=10% Similarity=0.004 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhH-------hcCCH-------HHHHHHhccCCC---C-ChhhHHHHHHHHHHc
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYA-------KCGSI-------FSASKIFQCHPQ---K-DVVMLTAMIGGYAMH 669 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 669 (875)
+.+..+++.++...+.++.++..++..+. +.|++ ++|..+|++..+ | +...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666666666667777777776665 34775 899999997544 3 556899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh-cCCChHH
Q 002834 670 GMGKAALKVFSDMLELGVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA-RGGQISD 745 (875)
Q Consensus 670 g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~ 745 (875)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|.++|+++.+ ..|+ ...|...+.... ..|++++
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 466543 788888889999999999999999976 3444 345544443322 3799999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---cCC-CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEM---EAD-NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
|.+++++.. ..| ++..|..++..+...|+.+.|+..++++++. .|+ ....|..++..+...|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 333 6788999999999999999999999999996 553 5668888999999999999999998887
Q ss_pred HhCC
Q 002834 820 KTRD 823 (875)
Q Consensus 820 ~~~~ 823 (875)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-09 Score=115.55 Aligned_cols=423 Identities=11% Similarity=0.048 Sum_probs=266.7
Q ss_pred CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hhhHHHHHHHHHhcCCCCchhhH
Q 002834 315 RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN---LKVGKEIHGYFLRHPYLEEDAAV 391 (875)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~ 391 (875)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+.....++...+
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 47889999999999999999999999999987 44555667777777778888 99999999999988743334337
Q ss_pred HHHHHHHHhcCCCh--------hHHHHHHHhcC------CC-CcchHHHHHHHHhc---------cCChhHHHHHHHHHH
Q 002834 392 GNALVSFYAKCSDM--------EAAYRTFLMIC------RR-DLISWNSMLDAFSE---------SGYNSQFLNLLNCML 447 (875)
Q Consensus 392 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 447 (875)
|...+....+.++. +...++|+... .+ +...|...+.-... +++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77777665555443 33446666531 22 33567666654332 223444555555544
Q ss_pred HCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------
Q 002834 448 MEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE------ 521 (875)
Q Consensus 448 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 521 (875)
.. .. .+.+....-+....+. +. ... ...++.- ...+++.|...+.++..
T Consensus 222 ~i----P~-------------~~~~~~w~~Y~~fe~~-~~--~~~---a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 222 CQ----PM-------------DCLESMWQRYTQWEQD-VN--QLT---ARRHIGE--LSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TS----CC-------------SSHHHHHHHHHHHHHH-HC--TTT---HHHHHHH--HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hC----cc-------------HHHHHHHHHHHHHHHh-cC--cch---HHHHHHH--hhHHHHHHHHHHHHHHHHHHhHh
Confidence 21 01 1122222222222221 10 111 1111111 12244555555544211
Q ss_pred C--CC--------------------cccHHHHHHHhhcCC-------ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHc
Q 002834 522 K--RN--------------------LVTFNPVISGYANCG-------SADEAFMTFSRIYARDLTP---WNLMIRVYAEN 569 (875)
Q Consensus 522 ~--p~--------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~ 569 (875)
+ |. ...|...+.--...+ ..+.+..+|+++....+.. |...+..+.+.
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 1 11 022333333222221 1233456777775554433 88888888899
Q ss_pred CCchHHH-HHHHHHHHCCCCCCcc-hHhcHHHHhhcccchHHHHHHHHHHHHhcC----------C------------Cc
Q 002834 570 DFPNQAL-SLFLKLQAQGMKPDAV-TIMSLLPVCSQMASVHLLRQCHGYVIRACF----------D------------GV 625 (875)
Q Consensus 570 ~~~~~A~-~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----------~------------~~ 625 (875)
|+.++|. .+|++.... .|... .+...+......|+++.+..+++.+....+ + ..
T Consensus 357 ~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp SCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 9999997 999998864 35443 345566677788999999999999887521 1 23
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCCC-C---hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQK-D---VVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
.+|...+....+.|.++.|+.+|.+..+. . ...|-..+..-.+. ++.+.|..+|+..++. ++-+...+...+.-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 46788888888899999999999987643 2 23343333333344 4589999999999986 34455556677777
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACR 770 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~ 770 (875)
....|+.+.|..+|+++.. ..|+ ...|...++.-.+.|..+.+.++.+++. ..|+......+..-|.
T Consensus 514 e~~~~~~~~AR~lferal~---~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSID---KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTT---TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 7789999999999999876 2332 3478888888889999999999999985 4555545555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=108.82 Aligned_cols=160 Identities=13% Similarity=-0.031 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
|..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|.++++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444445555555555555555555442 1223344444555555556666666666555542 1122345555566666
Q ss_pred cCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 739 RGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
..|++++|.+.++++. .+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666665552 23345666666677777777777777777777777777777777777777778888777776
Q ss_pred HHHHh
Q 002834 817 KLMKT 821 (875)
Q Consensus 817 ~~~~~ 821 (875)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=127.12 Aligned_cols=176 Identities=10% Similarity=-0.007 Sum_probs=154.3
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMG-KAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
+++|...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666654432 4678899999999999999 9999999999985 444 6788888889999999999999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHhhcC---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CChh
Q 002834 716 SIEKVQGIKPTPEQYASLVDLLARG---------GQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH--------HEVE 776 (875)
Q Consensus 716 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------~~~~ 776 (875)
++.+ +.|+...+..++.+|... |++++|++.+++.. ..| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 678878999999999999 99999999999984 445 578899999999888 9999
Q ss_pred HHHHHHHHHhcccC---CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEA---DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+..++++++++| +++..|..+|.+|...|++++|++.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-10 Score=103.80 Aligned_cols=168 Identities=11% Similarity=-0.035 Sum_probs=143.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS 702 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 702 (875)
..+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677889999999999999999876 466789999999999999999999999999852 445677888888999
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..|++++|.++++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...|..+...+...|+.+.|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 23346688899999999999999999999874 33456888999999999999999999
Q ss_pred HHHHHhcccCCCCccH
Q 002834 781 VANRLFEMEADNIGNY 796 (875)
Q Consensus 781 ~~~~~~~~~p~~~~~~ 796 (875)
.++++++++|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=110.80 Aligned_cols=201 Identities=6% Similarity=-0.009 Sum_probs=105.5
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcC-CCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHH
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACF-DGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYA 667 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 667 (875)
..+......+...|+++.|...+..+.+..+ ++...+..+...|.+.|++++|...|++..+ .+..+|..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4444444555555666666666666665555 3444444455555555555555555554432 23345555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-h-------hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHH
Q 002834 668 MHGMGKAALKVFSDMLELGVNPD-H-------VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDL 736 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~ 736 (875)
..|++++|+..+++..+. .|+ . ..|..+...+...|++++|.+.|+++.+ +.|+ ...+..++.+
T Consensus 88 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHH
Confidence 555555555555555552 232 2 2244444455555555555555555533 3444 2244455555
Q ss_pred hhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 737 LARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
|...|+. .++++. ...+...+... .....++++.|...++++++++|+++.....++.+..
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 5443332 111111 01111222111 1223345589999999999999999888877777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-09 Score=115.89 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=130.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
......+...|++++|+..|++..+.... ++... ...++..+...|...
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE------------------------------KAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH------------------------------HHHHHHHHHHHHHHc
Confidence 34455567788888888888877653211 22110 112233444455555
Q ss_pred CCHHHHHHHhccCCC-----C-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhh
Q 002834 639 GSIFSASKIFQCHPQ-----K-----DVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-DHVVITAVLSACSH 703 (875)
Q Consensus 639 g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~ 703 (875)
|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+. +..+ ...++..+..++..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555555544443221 1 1235666777777777777777777766542 1111 12345666667777
Q ss_pred cCcHHHHHHHHHHhHHHhC--CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC----C--CCCH-HHHHHHHHHHHhcC
Q 002834 704 AGLVDEGLEIFRSIEKVQG--IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP----V--EADC-NVWGTLLGACRIHH 773 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~~-~~~~~l~~~~~~~~ 773 (875)
.|++++|.+++++..+... ..|. ..++..++.++.+.|++++|.+.+++.. . .|.. ..+..+...+...+
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 7777777777777655211 2222 3466777777777777777777776652 1 2222 23334444455556
Q ss_pred C---hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 774 E---VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 774 ~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+ ++.|...+++. ...|.....+..+|.+|...|++++|.+.+++..
T Consensus 315 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 315 DERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 56666665552 2233344566678888888888888887665553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=117.99 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=147.6
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHh-------cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC----------
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRA-------CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---------- 653 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 653 (875)
.++..+...+...|+++.|..++..+.+. ..+ ....+..+...|...|++++|...|++...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566667777888888888888777764 233 666777788888888888888887776442
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh----
Q 002834 654 -KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---- 721 (875)
Q Consensus 654 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 721 (875)
....+|..+...|...|++++|+..++++.+. +..|+ ...+..+...+...|++++|.++++++.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 12346777777888888888888888877763 22232 3346666667778888888888888776631
Q ss_pred -CCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC----------CCCC-HHHH------HHHHHHHHhcCChhHHHHHH
Q 002834 722 -GIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP----------VEAD-CNVW------GTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 722 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~------~~l~~~~~~~~~~~~a~~~~ 782 (875)
+..|. ...+..++.+|...|++++|.+.++++. ..+. ...| ..+...+...+.+..+...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 11332 3367777888888888888888777652 1111 1112 22223333445566666677
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+++....|..+..+..++.+|...|++++|.+.++...+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888999999999999999999998877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.3e-09 Score=108.64 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=137.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ-------K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN--P--DHV 692 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 692 (875)
...+...+...|++++|...+++... + ...++..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566777788888888877775432 1 1235666788888999999999999988764221 1 123
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHhhcCCChHHHHHHHHhCC-CCCC-----HHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA-----SLVDLLARGGQISDAYSLVNRMP-VEAD-----CNV 761 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 761 (875)
++..+...+...|++++|..++++..+...-......+. ..+..+...|++++|..++++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566677788899999999999998876422211111121 23455778999999999998884 2221 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCC------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNI------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|++++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56777788889999999999999988755422 3667789999999999999997766543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=120.90 Aligned_cols=289 Identities=9% Similarity=-0.017 Sum_probs=212.4
Q ss_pred HHhcCCHHHHHHHHHhhccC-------CCcccHHHHHHH--hhcCCChHHHH-----------HHHHhhhcCCCc--c--
Q 002834 503 YAKCRNIKYAFNVFQSLLEK-------RNLVTFNPVISG--YANCGSADEAF-----------MTFSRIYARDLT--P-- 558 (875)
Q Consensus 503 ~~~~g~~~~A~~~~~~~~~~-------p~~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~--~-- 558 (875)
+.+.+++++|..+++++... ++...|-.++.. ....+..+.+. +.++.+...... .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35789999999999988653 133333333322 11122333333 555555332111 1
Q ss_pred ----HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----cchHhcHHHHhhcccchHHHHHHHHHHHHhcCC------
Q 002834 559 ----WNLMIRVYAENDFPNQALSLFLKLQAQGM-KPD----AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD------ 623 (875)
Q Consensus 559 ----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------ 623 (875)
+......+...|++++|+..|++..+.-. .++ ..++..+...+...|+.+.|...+..+.+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 22366778899999999999999876411 122 246777778899999999999999998876433
Q ss_pred -CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-C
Q 002834 624 -GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLEL----GV-N 688 (875)
Q Consensus 624 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 688 (875)
....+..+...|...|++++|...|++..+ ++. .+|+.+...|...|++++|+..+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 245778899999999999999999987664 222 47888999999999999999999998872 23 2
Q ss_pred CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC--CCC-hhHHHHHHHHhhcCCC---hHHHHHHHHhCCCCCCH-HH
Q 002834 689 PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI--KPT-PEQYASLVDLLARGGQ---ISDAYSLVNRMPVEADC-NV 761 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~ 761 (875)
....++..+..++.+.|++++|.+++++..+...- .|. ...+..+...+...|+ +++|+.++++....|+. ..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 33556788888999999999999999998763221 122 2346778899999999 99999999998655543 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+..+...+...|+++.|...+++++++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=117.28 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=150.2
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcC--------CCc---cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYAR--------DLT---PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV 592 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 592 (875)
...++..+...+...|++++|...++++... ++. .+..+...|...|++++|+..+++..+....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK---- 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 3456777788888888888888888777541 111 1677777777788888888777776542100
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLT 660 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~ 660 (875)
......+ ....+..+...|...|++++|...|++..+ ....+|.
T Consensus 102 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 ------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0000001 233445566666777777777766665432 1234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh------CCCCCh
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ------GIKPTP 727 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~ 727 (875)
.+...|...|++++|++.++++.+. +..|+ ..++..+..++...|++++|.++++++.+.. ...|..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8888899999999999999988764 22333 3457777778999999999999999987631 122221
Q ss_pred -------hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 728 -------EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 728 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..+..+...+...+.+.+|...++... ..| ...+|..+..++...|+++.|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122333344445566666666676664 334 3477888999999999999999999999999886
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-09 Score=107.39 Aligned_cols=190 Identities=11% Similarity=0.000 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQ 729 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 729 (875)
+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+++.+.+.-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3344444555555556666666666665553 222 234444455555566666666666655553222222 224
Q ss_pred HHHHHHHhhc--------CCChHHHHHHHHhCC-CCCC-HHH-----------------HHHHHHHHHhcCChhHHHHHH
Q 002834 730 YASLVDLLAR--------GGQISDAYSLVNRMP-VEAD-CNV-----------------WGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 730 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~-----------------~~~l~~~~~~~~~~~~a~~~~ 782 (875)
+..++.++.. .|++++|+..++++. ..|+ ... +..+...+...|+++.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4455555555 566666665555542 2222 122 256677888999999999999
Q ss_pred HHHhcccCCCC---ccHHHHHHHHHhc----------CCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCC
Q 002834 783 NRLFEMEADNI---GNYVVMSNLYAAD----------ARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSH 849 (875)
Q Consensus 783 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~ 849 (875)
+++++..|+++ ..+..++.+|... |++++|++.++.+.+.. | .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p-------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P-------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------CC
Confidence 99999999865 4788999999977 89999999988876532 2 36
Q ss_pred CChHHHHHHHHHHHHHHHhc
Q 002834 850 PRRDMIYWVLSILDEQIKDQ 869 (875)
Q Consensus 850 ~~~~~~~~~~~~l~~~~~~~ 869 (875)
|...+....+..+...+++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 77778888888888777663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=103.55 Aligned_cols=140 Identities=7% Similarity=-0.068 Sum_probs=103.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC
Q 002834 664 GGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG 741 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 741 (875)
..+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3344556777777777776542 333 34455666778888888888888888876 4554 457888888888888
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRV-VANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
++++|+..+++.. ..| ++.+|..+...+...|+.+.|.+ .++++++++|+++.+|...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887764 455 46788888888888888866554 4689999999999999999999888885
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=123.64 Aligned_cols=163 Identities=13% Similarity=0.151 Sum_probs=143.4
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLS 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 699 (875)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 566788899999999999999999998764 45789999999999999999999999999984 565 567888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
++...|++++|++.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 5676 4589999999999999999999999884 566 4588999999999999999
Q ss_pred HHHHHHHHHhcccCC
Q 002834 777 LGRVVANRLFEMEAD 791 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~ 791 (875)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999988664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-09 Score=107.21 Aligned_cols=185 Identities=6% Similarity=-0.033 Sum_probs=126.7
Q ss_pred HhHhcCCHHHHHHHhccCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQ-------K--DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV---NPD--HVVITAVLS 699 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 699 (875)
.|...|++++|...|++... + ...+|+.+..+|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666554332 1 135788888889999999999999888776311 111 346777888
Q ss_pred HHhhc-CcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH--------HHHHHH
Q 002834 700 ACSHA-GLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC--------NVWGTL 765 (875)
Q Consensus 700 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~l 765 (875)
.|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|+..+++.. ..|+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999998774221111 3468889999999999999999998873 33322 146677
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCcc-----HHHHHHHHH--hcCCchhHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGN-----YVVMSNLYA--ADARWDGVVEIRKL 818 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~ 818 (875)
..++...|+++.|+..++++++++|+.+.. +..++..|. ..+++++|++.++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 777888999999999999999999987654 334555554 34667777777643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=98.84 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
.+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|++.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 445667889999999999999999999986 5688999999999999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-09 Score=109.96 Aligned_cols=189 Identities=7% Similarity=-0.037 Sum_probs=145.6
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CC-ChhhH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELG--V---NP-DHVVI 694 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~~~ 694 (875)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344567778899999888886543 22 3578889999999999999999999887631 1 11 13467
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC------CCCC-HHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP------VEAD-CNVWG 763 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~ 763 (875)
..+..+|...|++++|.+.|+++.+...-.++ ...+..++.+|...|++++|.+.+++.. ..|. ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 77888999999999999999998764322222 3478899999999999999999998873 3343 46778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCC--C---CccHHHHHHHHHhcCC---chhHHHHHHH
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEAD--N---IGNYVVMSNLYAADAR---WDGVVEIRKL 818 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~---~~~~~~l~~~~~~~g~---~~~A~~~~~~ 818 (875)
.+...+...|+.+.|...+++++++.+. + ...+..++.+|...|+ +.+|+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888999999999999999999998654 2 2345678888888898 7777776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=108.32 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=140.5
Q ss_pred cccchHHHHHHHHHHHHh-------cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHHHHH
Q 002834 603 QMASVHLLRQCHGYVIRA-------CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLTAMI 663 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li 663 (875)
..|+++.|...++.+.+. ..+ ...++..+...|...|++++|...|++... ....+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666665555542 223 566778888888888888888888876442 1234677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh-----CCCCC-hhHH
Q 002834 664 GGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ-----GIKPT-PEQY 730 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~ 730 (875)
..|...|++++|++.+++..+. .-.|+ ..++..+...+...|++++|.++++++.+.. +..|+ ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888887764 11222 4456667778888888888888888887631 11333 3467
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhcccCCCC
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP----------VEAD-CNVWGTLLGACRIHHE------VELGRVVANRLFEMEADNI 793 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~ 793 (875)
..++.+|.+.|++++|.++++++. ..+. ...|..+.......+. +..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 778888888888888888887652 1222 2334444333333222 2233333333333445556
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..++.+|...|++++|.+.++...+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6889999999999999999998887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-09 Score=105.35 Aligned_cols=212 Identities=11% Similarity=-0.014 Sum_probs=139.7
Q ss_pred ChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
++++|...+++. +..|...|++++|+..|.+..+..... ++...
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~---------- 75 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKA---------------GNEDE---------- 75 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHT---------------TCHHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHh---------------CCHHH----------
Confidence 478888887765 556778888888888887765421000 00000
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 689 (875)
....++.+..+|.+.|++++|+..|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|
T Consensus 76 ----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~ 149 (292)
T 1qqe_A 76 ----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YA 149 (292)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HH
T ss_pred ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HH
Confidence 122334455556666666666666654432 11 34678888888886 9999999999988763 22
Q ss_pred C-------hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh--------HHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 690 D-------HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE--------QYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 690 ~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
+ ..++..+...+...|++++|+.+|+++.+ +.|+.. .|..++.++...|++++|...+++..
T Consensus 150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK---SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 24577788889999999999999999877 333321 56778888999999999999998874
Q ss_pred -CCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHhcccCCCCccH
Q 002834 755 -VEADC------NVWGTLLGACR--IHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 755 -~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
..|+. ..+..++.++. ..++++.|+..++++++++|.+...+
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 45542 12344555554 34678888888888888888654333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=98.03 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=101.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
|...+...|++++|++.++.... ..|+. ..+..++.+|.+.|++++|++.+++.. ..| ++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34466778999999999988744 45543 367789999999999999999999985 555 5688999999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLMK 820 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 820 (875)
+++.|+..++++++++|+++.++..+|.+|...|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988775 45443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.1e-09 Score=102.72 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=140.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-hhhHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-D---VVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD-HVVIT 695 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 695 (875)
+...+..+...+.+.|++++|...|+++.+ | + ..+|..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566677788889999999999998765 3 3 56788888999999999999999999988521 112 33456
Q ss_pred HHHHHHhh--------cCcHHHHHHHHHHhHHHhCCCCChh-HH--------------HHHHHHhhcCCChHHHHHHHHh
Q 002834 696 AVLSACSH--------AGLVDEGLEIFRSIEKVQGIKPTPE-QY--------------ASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 696 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~-~~--------------~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
.+..++.. .|++++|...|+++.+.+.-.+... .. ..++.+|.+.|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66667777 8999999999999987432222221 11 5678999999999999999988
Q ss_pred CC-CCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHH
Q 002834 753 MP-VEAD----CNVWGTLLGACRIH----------HEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 753 ~~-~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 813 (875)
+. ..|+ ...+..+..++... |+++.|+..++++++..|+++. ....++.++...|+++++.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 73 3343 35677777777755 8899999999999999999874 4455666666655555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=121.86 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=98.9
Q ss_pred hcccchHHHHHHHHHHH--------HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 602 SQMASVHLLRQCHGYVI--------RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
...|+.++|.+.++.+. +..+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45566666666666665 43444555555666666666666666666655443 34455555666666666
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYS 748 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 748 (875)
++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|+++.+ +.|+ ...|..++.+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666553 33 23444555555666666666 666665554 3343 3355556666666666666666
Q ss_pred HHHhCC-CCCCH-HHHHHHHHHHHhcCC-----hhHHHHHHHHHhcccCCCCcc
Q 002834 749 LVNRMP-VEADC-NVWGTLLGACRIHHE-----VELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 749 ~~~~~~-~~p~~-~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.++++. ..|+. ..|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 666553 44442 444444444443333 233334444444444444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-07 Score=95.88 Aligned_cols=195 Identities=10% Similarity=-0.037 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---------C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC--------c
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEK---------R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL--------T 557 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~ 557 (875)
+..+...+...|++++|...+++.... | ....+..+...+...|++++|...+++...... .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666667777776666655431 1 112333444555555666666655555422111 1
Q ss_pred cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 558 PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
.+..+...+...|++++|...+++.......++.. .+.. ......+..+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 226 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-----------------------------NANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH-----------------------------HHHHHHHHHHH
Confidence 14455555566666666666665554321111110 0000 00012334466
Q ss_pred hcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChh-hHHHHHHHHhhc
Q 002834 637 KCGSIFSASKIFQCHPQKD-------VVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNPDHV-VITAVLSACSHA 704 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~a~~~~ 704 (875)
..|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 7888888888888766522 124556677777888888888888776542 2112222 344445567777
Q ss_pred CcHHHHHHHHHHhHH
Q 002834 705 GLVDEGLEIFRSIEK 719 (875)
Q Consensus 705 g~~~~a~~~~~~~~~ 719 (875)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=101.77 Aligned_cols=168 Identities=7% Similarity=-0.050 Sum_probs=132.5
Q ss_pred HHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 646 KIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
+.+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++++.. ..
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~ 181 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QD 181 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GG
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hh
Confidence 3333333344556777888888999999999999999884 454 55677778899999999999999998865 45
Q ss_pred CChhH-HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC--CccHHHH
Q 002834 725 PTPEQ-YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN--IGNYVVM 799 (875)
Q Consensus 725 p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l 799 (875)
|+... .......+.+.|+.++|.+.+++.. ..| +...+..+..++...|+++.|+..++++++.+|++ +..+..|
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 66543 2333344667788888888887764 445 56889999999999999999999999999999998 7889999
Q ss_pred HHHHHhcCCchhHHHHHHH
Q 002834 800 SNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~ 818 (875)
+.+|...|+.++|...+++
T Consensus 262 ~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 262 QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHH
Confidence 9999999999999986544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-07 Score=92.74 Aligned_cols=164 Identities=8% Similarity=-0.004 Sum_probs=102.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-----Ch
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-----TP 727 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 727 (875)
++..++..+..++...|++++|++++.+.+..|..+ +...+...+..+.+.|+.+.|.+.+++|.+ ..| +.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 344445566677777778888888777776544312 334455566677777888888888877765 455 23
Q ss_pred hHHHHHHHH--hhc--CCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----------cCCC
Q 002834 728 EQYASLVDL--LAR--GGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEM----------EADN 792 (875)
Q Consensus 728 ~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~ 792 (875)
.+...++.+ ... .+++++|..+|+++. ..|+...-..+++++...|+++.|++.++++.++ +|+|
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 344444433 222 337778887777774 3344222233444666778888888888777766 4667
Q ss_pred CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 793 IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 793 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+.++..++.+....|+ +|.+++.+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7777666666666676 777777777653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-08 Score=92.89 Aligned_cols=161 Identities=6% Similarity=-0.076 Sum_probs=134.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC----cHHHHHHHHHHhHHHhCCCCChhH
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG----LVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
.++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|.++|++..+ . -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 467788888899999999999999999998865 45666667777777 6 89999999999966 2 24567
Q ss_pred HHHHHHHhhc----CCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCCCCccHH
Q 002834 730 YASLVDLLAR----GGQISDAYSLVNRMPV-EAD---CNVWGTLLGACRI----HHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 730 ~~~l~~~~~~----~g~~~~A~~~~~~~~~-~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+..|..+|.. .+++++|++++++... .|. +..+..|...+.. .+|.++|+..++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 8899999999999863 342 7888888888887 78999999999999998 77888999
Q ss_pred HHHHHHHhc-C-----CchhHHHHHHHHHhCC
Q 002834 798 VMSNLYAAD-A-----RWDGVVEIRKLMKTRD 823 (875)
Q Consensus 798 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 823 (875)
.|+.+|... | ++++|.+.+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999988877655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=88.41 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 737 (875)
+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555666666666666666666665532 223444555555555566666666666555441 12
Q ss_pred hcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 738 ARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2233444455555555566666666666666666666666666666666666666666655
Q ss_pred HHH
Q 002834 818 LMK 820 (875)
Q Consensus 818 ~~~ 820 (875)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-08 Score=85.45 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
.+..++..|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999997653 467788999999999999999999999998863 4456677777888889
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
.|++++|.++++++.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999888762 1223445555666666666666665555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=93.66 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH-h
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL-L 737 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 737 (875)
..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+ ..|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHH
Confidence 33444555555555555555555442 22 233444455555566666666666655543 22222222111111 1
Q ss_pred hcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC--CccHHHHHHHHHhcCCchhHH
Q 002834 738 ARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN--IGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 813 (875)
...+...+|++.+++.. ..| +...|..+..++...|+++.|+..++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11122233555555543 345 46788888888889999999999999999999875 558889999999999999999
Q ss_pred HHHHHH
Q 002834 814 EIRKLM 819 (875)
Q Consensus 814 ~~~~~~ 819 (875)
..+++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 976654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=90.34 Aligned_cols=100 Identities=10% Similarity=-0.003 Sum_probs=87.1
Q ss_pred CCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHH
Q 002834 722 GIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 722 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 798 (875)
.+.|+. ..+..++..+.+.|++++|++.++++. ..| ++..|..+..++...|+++.|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 355653 477788888999999999999998885 455 67889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+|.+|...|++++|++.+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998877765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-08 Score=110.81 Aligned_cols=167 Identities=8% Similarity=-0.067 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHhccCC--------C---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 636 AKCGSIFSASKIFQCHP--------Q---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
...|++++|++.|++.. + .+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44566666666665543 1 234455556666666666666666666665531 22334455555566666
Q ss_pred CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++ ++.++++. ..| +...|..+..++...|+++.|+..
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655 3343 3355566666666666666 65555553 333 345566666666666666666666
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
++++++++|+++.++..++.+|...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666666666666655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=92.26 Aligned_cols=209 Identities=10% Similarity=0.072 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcC--CHHHHHHHhccCCC---CChhhHHHHHHHH----HHc---CChHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCG--SIFSASKIFQCHPQ---KDVVMLTAMIGGY----AMH---GMGKAAL 676 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~ 676 (875)
++....+.++..++....+++.-...+...| +++++++.++.+.. .+..+|+.-...+ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 3444444444444444445555555555555 66777766666553 3445666554444 444 6788888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH--HHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCC------hHHHH
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVD--EGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQ------ISDAY 747 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~ 747 (875)
++++++.+.. +-|...|..-.-.+.+.|.++ +++++++++.+ ..| +...|.....++.+.|+ +++++
T Consensus 131 ~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 131 DILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 8888888752 345566666666666777777 88888888877 334 34466666666666666 78888
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHhccc---CCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 748 SLVNRMP-VEA-DCNVWGTLLGACRIHHE-VELGRVVANRLFEME---ADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 748 ~~~~~~~-~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++++++. ..| |..+|+.+...+...|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|+++++.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8887764 344 66888888888877766 444667788887776 77778888888888888888899988888765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=85.53 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.+...+..|.+.|++++|++.+++.. ..| ++.+|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34444455555555555555554442 222 3344555555555555555555555555555555555555555555555
Q ss_pred CCchhHHHHHHHH
Q 002834 807 ARWDGVVEIRKLM 819 (875)
Q Consensus 807 g~~~~A~~~~~~~ 819 (875)
|++++|++.+++.
T Consensus 95 ~~~~~A~~~~~~a 107 (126)
T 4gco_A 95 REWSKAQRAYEDA 107 (126)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=93.75 Aligned_cols=154 Identities=10% Similarity=0.005 Sum_probs=109.7
Q ss_pred HHhHhcCCHHHHHHHhccCCC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-Chh
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ--K-DVVMLTA----------------MIGGYAMHGMGKAALKVFSDMLELGVNP-DHV 692 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 692 (875)
..+...|++++|...|++... | +...|.. +..+|...|++++|+..|++..+. .| +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
Confidence 344556666666666665543 2 2234444 888899999999999999999885 45 456
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCC--hHHHHHHHHhCCCCCCH--HHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQ--ISDAYSLVNRMPVEADC--NVWGTLLG 767 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~ 767 (875)
.+..+..++...|++++|.+.|+++.+ +.|+ ...+..++.+|...|. .+++...++... .|++ ..|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 777788889999999999999999987 5565 4588888888866654 345566666654 3443 34455556
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCC
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
++...|+++.|+..++++++++|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6677889999999999999999964
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=84.37 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=91.2
Q ss_pred CCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHH
Q 002834 687 VNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVW 762 (875)
Q Consensus 687 ~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~ 762 (875)
+.|+. ..+......+.+.|++++|++.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34443 3456667788888888888888888876 3454 5578888888888888888888888774 444 56889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
..+..++...|+++.|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-07 Score=92.64 Aligned_cols=154 Identities=8% Similarity=0.010 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGV---NPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PE 728 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 728 (875)
+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++.|++..+...-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 355666677777777777777777654210 121 2456667777777 8899998888888763211111 34
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-V---EAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN----- 795 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----- 795 (875)
++..++.+|.+.|++++|++.+++.. . .++ ...+..+..++...|+++.|...+++++ ++|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 77788888999999999998888763 1 121 1245555566667799999999999999 88876654
Q ss_pred HHHHHHHHHhcCCchhHHH
Q 002834 796 YVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~ 814 (875)
...++..| ..|+.+++.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 23344444 4666655555
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=95.94 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=108.4
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL------GV 687 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 687 (875)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555666677777777777777765432 12457788888999999999999999988874 11
Q ss_pred CCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh------CCCCCh-hHHHHHHHHhhcC------CChHHHHHHHHhC
Q 002834 688 NPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ------GIKPTP-EQYASLVDLLARG------GQISDAYSLVNRM 753 (875)
Q Consensus 688 ~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~------g~~~~A~~~~~~~ 753 (875)
.|+ ..++..+..++...|++++|.++++++.+.. ...+.. ..+..+...+... ..+.++..+++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 4567778889999999999999999987631 123332 2444444444433 3355555556655
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 754 P-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 754 ~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
. ..|+ ..++..+..++...|+++.|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 2333 3678888899999999999999999998753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=90.41 Aligned_cols=99 Identities=13% Similarity=-0.006 Sum_probs=80.5
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
+.|+ ...+..++..+.+.|++++|+..+++.. ..| ++..|..+..++...|+++.|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4554 3466777888888888888888888774 344 667888888888888999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+|...|++++|++.+++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-08 Score=108.23 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=123.3
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888765 35678999999999999999999999999985 44 466778888899999999999999
Q ss_pred HHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 002834 714 FRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HEVELGRVVANRLFE 787 (875)
Q Consensus 714 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 787 (875)
+++..+ ..|+ ...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++... |+.+.|.+.++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999987 3454 5688999999999999999999999874 444 568888899999999 999999999999999
Q ss_pred ccCCCCccHHHHH
Q 002834 788 MEADNIGNYVVMS 800 (875)
Q Consensus 788 ~~p~~~~~~~~l~ 800 (875)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998887776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-08 Score=110.12 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 746 (875)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.+++..+ ..|+ ...+..++.+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999998874 444 66788888899999999999999999976 5665 55899999999999999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 002834 747 YSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD---ARWDGVVEIRKLMKT 821 (875)
Q Consensus 747 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 821 (875)
.+.+++.. ..| +...|..+..++...|+++.|++.++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999874 444 5688999999999999999999999999999999999999999999999 999999997776644
Q ss_pred C
Q 002834 822 R 822 (875)
Q Consensus 822 ~ 822 (875)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-07 Score=90.46 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=121.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----ChhhHHH
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-----DHVVITA 696 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ 696 (875)
....+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHH
Confidence 334666778888999999888887633 2456777888999999999999999999988 467 3566666
Q ss_pred HHHH--HhhcC--cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCC-----------CC-CHH
Q 002834 697 VLSA--CSHAG--LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPV-----------EA-DCN 760 (875)
Q Consensus 697 ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p-~~~ 760 (875)
+..+ ....| +..+|..+|+++.+ -.|+......+..++.+.|++++|.+.++.+.. .| ++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 6665 33334 89999999999865 345533333444488999999999999876531 24 456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+..+++......|+ .|.+.++++.+..|++|....
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 66677666666776 789999999999999986543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=9e-08 Score=88.28 Aligned_cols=156 Identities=11% Similarity=-0.042 Sum_probs=119.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-Hh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CS 702 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~ 702 (875)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566778889999999999998886 46678999999999999999999999988764 3443332222111 22
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCChhH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD---CNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~ 777 (875)
..+...+|.+.+++..+ ..|+ ...+..++.++...|++++|...++++. ..|+ ...|..+..++...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233457888888877 4565 5688889999999999999999998873 5554 4688899999999999999
Q ss_pred HHHHHHHHhc
Q 002834 778 GRVVANRLFE 787 (875)
Q Consensus 778 a~~~~~~~~~ 787 (875)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=90.01 Aligned_cols=128 Identities=13% Similarity=-0.048 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 735 (875)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.|+++.+. .|+ ...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556667777778888888887766 3566677777777777888888888888777662 333 446777777
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CH----------------HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DC----------------NVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+|...|++++|++.+++.. ..| +. ..|..+..++...|+++.|...++++++++|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776663 222 11 56666667777777777777777777777664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=95.66 Aligned_cols=132 Identities=8% Similarity=-0.007 Sum_probs=110.9
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTL 765 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 765 (875)
+.+...+..+...+...|++++|...|+++.+ ..|+ ...+..++.+|.+.|++++|...++++. ..|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34445566777789999999999999999987 4565 4588899999999999999999999996 66776544444
Q ss_pred HHH-HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 766 LGA-CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 766 ~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
... +...++.+.|+..++++++.+|+++..+..|+.+|...|++++|++.+..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 433 567788899999999999999999999999999999999999999988777653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=89.43 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=111.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHH
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV----VITAVL 698 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll 698 (875)
..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++.+. .|+.. .+..+.
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHH
Confidence 3445556667777777777776543 22 235666777777777777777777777764 33322 233333
Q ss_pred HHHh------------------hcCcHHHHHHHHHHhHHHhCCCCChh-HH-----------------HHHHHHhhcCCC
Q 002834 699 SACS------------------HAGLVDEGLEIFRSIEKVQGIKPTPE-QY-----------------ASLVDLLARGGQ 742 (875)
Q Consensus 699 ~a~~------------------~~g~~~~a~~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~ 742 (875)
.++. ..|+.++|...|+++.+ ..|+.. .+ ..++..|.+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3333 25678888888888866 345432 11 356778899999
Q ss_pred hHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 743 ISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 743 ~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+++|+..++++. ..|+. ..+..+..++...|+.+.|+..++++....|++...
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 999999998874 33432 568888899999999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=94.62 Aligned_cols=171 Identities=8% Similarity=-0.036 Sum_probs=130.4
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC-C-hhhHHHHHHHHhhcCcHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV---NP-D-HVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~-~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.+++++|...|.+ ....|...|++++|+..|.+..+... .+ . ..+|..+...|...|++++|+.
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4666666666543 45677788888888888887765311 11 1 3467778888999999999999
Q ss_pred HHHHhHHHhCCC--CC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC---CC----HHHHHHHHHHHHhcCChhHHHH
Q 002834 713 IFRSIEKVQGIK--PT--PEQYASLVDLLARGGQISDAYSLVNRMP-VE---AD----CNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 713 ~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---p~----~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
.|++..+.+.-. |. ..++..++.+|.. |++++|++.+++.. .. .+ ..++..+...+...|+++.|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987643211 21 3478889999998 99999999998873 11 11 3678888899999999999999
Q ss_pred HHHHHhcccCCCCc------cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 781 VANRLFEMEADNIG------NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 781 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+++++++.|++.. .+..++.+|...|++++|++.+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999877643 56778889999999999999887765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=83.36 Aligned_cols=99 Identities=12% Similarity=-0.052 Sum_probs=81.1
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
+.|+ ...+..++..+.+.|++++|...+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4454 3356667788888888888888888774 344 567888888888889999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+|...|++++|++.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-05 Score=87.64 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH-HHHHHhh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA-FMTFSRI 551 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 551 (875)
.+..+++.++... +....++...+..+.+.|+.++|..++++....|....... .|....+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~----p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF----YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHHHHHHHHHH
Confidence 3556666666644 44466666667777778888888888876554443322111 12111111111 1111111
Q ss_pred h--c-------C---CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc-chHHHHHHHHHHH
Q 002834 552 Y--A-------R---DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA-SVHLLRQCHGYVI 618 (875)
Q Consensus 552 ~--~-------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~ 618 (875)
. . . ....|...+....+.+..+.|..+|.+. +. ...+...|......-...+ +.+.|..+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 0 0 0011566666666667777788887777 21 1112222221111111112 4666666666666
Q ss_pred HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 619 RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
+..++++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6554444455555555556666666666666653 234445555544444555555555554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=84.59 Aligned_cols=223 Identities=8% Similarity=-0.027 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHHCCCCCCcch-HhcHHHHhhccc--chHHHHHHHHHHHHhcCCCchHHHHHHHHh----Hhc---CCHH
Q 002834 573 NQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMA--SVHLLRQCHGYVIRACFDGVRLNGALLHLY----AKC---GSIF 642 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 642 (875)
++|+.++..+... .|+..| ++.--......+ .++.+....+.+...++++..+++.-...+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666543 444433 222222333444 666666666666666666666665554444 444 7888
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc------HHHHH
Q 002834 643 SASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGK--AALKVFSDMLELGVNPDHVVITAVLSACSHAGL------VDEGL 711 (875)
Q Consensus 643 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~------~~~a~ 711 (875)
+++.+++++.+ ++..+|+.-...+...|+++ ++++.++++++.. +-|...|+.-...+.+.|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99988887765 57788998888888899888 9999999999864 3456667666666666666 89999
Q ss_pred HHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 712 EIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISD-AYSLVNRMP-V----EADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
++++++.. ..|+ ...|..+..++.+.|+..+ +.++.+++. . ..++..+..++.++.+.|+.++|+++++.
T Consensus 207 ~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 207 NYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999987 4554 5588888888888888544 556887764 2 33668888899999999999999999999
Q ss_pred Hhc-ccCCCCccHHHHHH
Q 002834 785 LFE-MEADNIGNYVVMSN 801 (875)
Q Consensus 785 ~~~-~~p~~~~~~~~l~~ 801 (875)
+.+ .||-....|...+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 996 89988887776554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-07 Score=87.38 Aligned_cols=158 Identities=12% Similarity=0.043 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHH----------------HHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITA----------------VLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
.+-.....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ- 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 3445566778999999999999999984 5654 44555 77789999999999999999987
Q ss_pred hCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhcccCCCCcc
Q 002834 721 QGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH--EVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 721 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+.|+ ...+..++.+|...|++++|++.+++.. ..| +..+|..+..++...| +.+.+...+++++...|.. ..
T Consensus 83 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 83 --KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred --HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 4565 5689999999999999999999999985 555 5688888888876654 3455666777765443322 24
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..++..+...|++++|+..+++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56678889999999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=97.16 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..|..++.+|.+.|++++|+..++++. ..| +...|..+..++...|+++.|+..++++++++|+++.++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577888888888899999988888874 344 568888999999999999999999999999999999999999999999
Q ss_pred cCCchhHHH-HHHHH
Q 002834 806 DARWDGVVE-IRKLM 819 (875)
Q Consensus 806 ~g~~~~A~~-~~~~~ 819 (875)
.|++++|.+ +++.|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999954 45544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-07 Score=84.90 Aligned_cols=131 Identities=11% Similarity=-0.087 Sum_probs=96.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcH
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLV 707 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 707 (875)
+..+...+...|++++|...|++...++..+|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566777788888888888888877777888888888888888888888888887752 33456677777788888888
Q ss_pred HHHHHHHHHhHHHhCC-------------CCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH
Q 002834 708 DEGLEIFRSIEKVQGI-------------KPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC 759 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 759 (875)
++|.+.|+++.+...- .|+ ...+..++.+|.+.|++++|.+.++++. ..|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888762211 111 2467778888888888888888887763 55543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-06 Score=87.48 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHH
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELG-VNPDHV----VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYA 731 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 731 (875)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+++.+...-.++ ...+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999888742 122221 2234555677788999999999998773222223 22688
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccH
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP-----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNY 796 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 796 (875)
.++.+|...|++++|...++++. ...+ ..++..+...|...|+++.|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888763 1112 2467888899999999999999999999987554 4578
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHH
Q 002834 797 VVMSNLYAADAR-WDGVVEIRKLMK 820 (875)
Q Consensus 797 ~~l~~~~~~~g~-~~~A~~~~~~~~ 820 (875)
..+|.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 599999765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-07 Score=83.54 Aligned_cols=124 Identities=6% Similarity=0.007 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+...|++++|...|++..+ ..| +...+..++.++...|++++|.+.+++.. ..| +...|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44455566666777777777766655 223 34466667777777777777777776653 233 5577888888888
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHH--HHHHHhcCCchhHHHHHHHHH
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVM--SNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..|+++.|...++++++++|+++..+..+ +..+...|++++|++.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999998877544 444888999999999877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-07 Score=80.11 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=77.6
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~ 768 (875)
..+..+...+...|++++|.+.|+++.+ ..| +...+..++.++...|++++|.+.++++. . +.+...|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344455555555566666665555543 233 23455566666666666666666665553 2 2345677788888
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
+...|+++.|+..++++++++|.++..+..++.+|...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999998887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=78.85 Aligned_cols=117 Identities=7% Similarity=-0.009 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
..+..+...+...|++++|.+.|+++.+. .+.+...+..++.++...|++++|.+.+++.. ..| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34455555666667777777777666552 12234466667777777777777777776653 233 456778888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
...|+++.|...++++++++|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=79.57 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=88.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..+..++..+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..|..+|.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356667777778888888888877764 334 567788888888888999999999999999999999899999999999
Q ss_pred cCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHH
Q 002834 806 DARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQ 865 (875)
Q Consensus 806 ~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~ 865 (875)
.|++++|++.+++..+.. |+. ...|...++...+..+.++
T Consensus 85 ~~~~~~A~~~~~~al~~~----p~~----------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKD----AEV----------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH----HHH----------------HTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC----ccc----------------CCchhHHHHHHHHHHHHHh
Confidence 999999999877665421 110 1346667777777766554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.6e-07 Score=77.11 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGAC 769 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 769 (875)
..+..+...+...|++++|.++++++.+. .+.+...+..++.++.+.|++++|..+++++. .+.+...|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666666666666666552 12234456666666777777777777666653 233556777888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
...|+++.|...++++++.+|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999999988888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-07 Score=84.74 Aligned_cols=116 Identities=10% Similarity=0.192 Sum_probs=63.1
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCh--h
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA-CRIHHEV--E 776 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~~~--~ 776 (875)
..|++++|...+++..+. .| +...+..++.+|...|++++|...++++. ..| +...|..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555555441 22 23355555555555555555555555542 222 34455555555 4455665 6
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.9e-08 Score=96.31 Aligned_cols=185 Identities=11% Similarity=-0.020 Sum_probs=132.3
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSAC 701 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 701 (875)
..+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++..+. .| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4456677788888999999999887653 46778889999999999999999999998874 44 456677777799
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHH---hhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDL---LARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 777 (875)
...|++++|...|+++.+. .|+.. .+...+.. ..+...+.. .......++..+...+... ..|+.+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999988763 23211 11111121 222222222 2222334455554444332 3689999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHhc-CCchhHHHHHHHHHh
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAAD-ARWDGVVEIRKLMKT 821 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 821 (875)
|.+.++++++++|++......+..++... +++++|.+++....+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999888888888888887 789999999887754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=92.16 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHh
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLL 737 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 737 (875)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..++.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34567777888888888888887663 45554555555578888899999988875533 11 121 23567788888
Q ss_pred hcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 738 ARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.+.|++++|++.+++.. ..|. ...+..+..++...|+.++|...++++++.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88999999999888873 2143 346777777888889999999999999999987 66555553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=87.54 Aligned_cols=162 Identities=9% Similarity=-0.072 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-----VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PE 728 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 728 (875)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++++.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455677788889999999999888774322111 12333445667788999999999888652111111 34
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------C
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP----VEAD-----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------I 793 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~ 793 (875)
.|..++.+|...|++++|...++++. ..|+ ..++..+...|...|+++.|...+++++++.++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999887763 1222 1578888899999999999999999999876431 4
Q ss_pred ccHHHHHHHHHhcCCchhH-HHHHHHH
Q 002834 794 GNYVVMSNLYAADARWDGV-VEIRKLM 819 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 819 (875)
..|..+|.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5688899999999999999 6645443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=79.29 Aligned_cols=93 Identities=8% Similarity=-0.008 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.+..++..+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667778888899999998888874 445 5688888888888999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHh
Q 002834 807 ARWDGVVEIRKLMKT 821 (875)
Q Consensus 807 g~~~~A~~~~~~~~~ 821 (875)
|++++|++.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=82.91 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=87.3
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-C
Q 002834 679 FSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-V 755 (875)
Q Consensus 679 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 755 (875)
|+++.. +.|+ ...+..+...+...|++++|...|+++.. ..| +...|..++.+|...|++++|++.+++.. .
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 3443 33455566678888888888888888876 345 35577788888888889998888888874 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 756 EA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 756 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
.| ++..|..+..++...|+++.|+..++++++++|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 44 557888888889999999999999999999999988764433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-07 Score=88.24 Aligned_cols=181 Identities=6% Similarity=-0.100 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHhccCCC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 002834 637 KCGSIFSASKIFQCHPQ---KDVVMLTAM-------IGGYAMHGMGKAALKVFSDMLELGVNPDHV-------------- 692 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 692 (875)
..++...|.+.|.++.. .....|+.+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777888888877664 344677777 4666666666666665555443 344321
Q ss_pred --------hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCH----H
Q 002834 693 --------VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADC----N 760 (875)
Q Consensus 693 --------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 760 (875)
....+..++...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345678889999999999988854 4465446667778899999999999999977544443 4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccc--CC-CCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEME--AD-NIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++..+..++...|+++.|+..++++.... |. .+...+.++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999998643 44 4457889999999999999999999998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.47 E-value=6e-05 Score=81.58 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
..|-..+..+.+.+..+.|..+|++. .. ..++...|...... +...++.+.|..+|+...+.++-. ...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 45777777777788899999999998 32 12233344322221 122347999999999998854322 345566778
Q ss_pred HhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 736 LLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
.....|+.+.|..+++.+. .....|..++..-..+|+.+.+..++++.++
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 3568899999888889999999998888875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=81.35 Aligned_cols=160 Identities=10% Similarity=-0.101 Sum_probs=124.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAMHG----MGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
++.....|..+|...+++++|...|++..+ .++.++..|...|.. + +.++|+++|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 445566677778888888888888887654 466778888888877 6 8999999999998754 556666777
Q ss_pred HHHhh----cCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHhhc----CCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 002834 699 SACSH----AGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDLLAR----GGQISDAYSLVNRMP-VEADCNVWGTLL 766 (875)
Q Consensus 699 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 766 (875)
..|.. .+++++|.++|++..+ ..|. ...+..|..+|.. .+++++|+.++++.. ..+++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 7899999999998865 4443 5678888888888 889999999999885 335666777777
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHhcccC
Q 002834 767 GACRIH-H-----EVELGRVVANRLFEMEA 790 (875)
Q Consensus 767 ~~~~~~-~-----~~~~a~~~~~~~~~~~p 790 (875)
..|... | |.++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777643 3 89999999999988754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=8.6e-08 Score=90.48 Aligned_cols=169 Identities=7% Similarity=-0.068 Sum_probs=98.4
Q ss_pred HHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH
Q 002834 632 LHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 708 (875)
+......|.+++|.+.++.... .....|..+...+...|++++|+..|++..+. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344445555555555543322 12334555566666666666666666666652 2221110000 000
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
.-. ..+ ....|..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 12567777888888888888888888774 334 56788888899999999999999999999
Q ss_pred cccCCCCccHHHHHHHHHhcCCchhHHH-HHHHHHh
Q 002834 787 EMEADNIGNYVVMSNLYAADARWDGVVE-IRKLMKT 821 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 821 (875)
+++|+++..+..++.++...|+.+++.+ .++.|-.
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888873 5555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.9e-07 Score=74.06 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNL 802 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 802 (875)
...+..++..+.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3466677777888888888888877763 2335677888888888899999999999999999999 88889999999
Q ss_pred HHhc-CCchhHHHHHHHHHhC
Q 002834 803 YAAD-ARWDGVVEIRKLMKTR 822 (875)
Q Consensus 803 ~~~~-g~~~~A~~~~~~~~~~ 822 (875)
|... |++++|++.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7e-07 Score=79.01 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+..+...+.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++|++.++++. ..| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 345555566677777777777777766 3444 4466677777777777777777777663 344 456777777777
Q ss_pred HhcCChhHHHHHHHHHhcccCCCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...|+++.|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=80.81 Aligned_cols=129 Identities=10% Similarity=0.148 Sum_probs=101.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHH-hhcCCCh-
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDL-LARGGQI- 743 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 743 (875)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888999998888752 345667788888999999999999999998773 34 45577888888 7788998
Q ss_pred -HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 744 -SDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 744 -~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
++|...++++. ..| +...|..+...+...|+++.|+..++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999998874 444 567888888999999999999999999999999987655433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-06 Score=82.03 Aligned_cols=209 Identities=8% Similarity=-0.010 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcC-CHHHHHHHhccCCC---CChhhHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCG-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH-G-MGKAALKVFSDM 682 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m 682 (875)
++.++.+.++..++.+..+++.--..+...| .+++++..++.+.. .+..+|+.-...+... + ++++++++++++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3444444444444444455555555555556 47777777776554 4556777777666665 6 778888888888
Q ss_pred HHCCCCCChhhHHHHHHHHhhcCcHH--------HHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCC-------hHHH
Q 002834 683 LELGVNPDHVVITAVLSACSHAGLVD--------EGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQ-------ISDA 746 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A 746 (875)
.+.. +-|...|..-.-.+.+.|.++ +++++++++.+ ..| +...|+....++.+.|+ ++++
T Consensus 152 L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 152 LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 7642 334555555444444545444 88888888877 334 44577777777777776 6888
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccc------CCCCccHHH
Q 002834 747 YSLVNRMP-VEA-DCNVWGTLLGACRIHHEV--------------------ELGRVVANRLFEME------ADNIGNYVV 798 (875)
Q Consensus 747 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~ 798 (875)
+++++++. ..| |...|+.+.+.+...|+. .........++... +..+.+...
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 88887774 444 678898888887776653 22223333333222 344556778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|+.+|...|+.++|.++++.+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=76.24 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
+...+..++..+...|++++|...+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..+|.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34566667777777777777777776653 333 4567777777777888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHh
Q 002834 804 AADARWDGVVEIRKLMKT 821 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~~~ 821 (875)
...|++++|++.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888887776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.6e-07 Score=80.50 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|++.|++..+ +.| +...|..++.+|.+.|++++|+..+++.. ..| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345677777889999999999999999987 345 45688899999999999999999998874 445 568888898
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
.++...|+++.|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999987665553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=78.20 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
+...|..+...+...|++++|+..|++.++.. +-+...+..+..++...|++++|+..|+++.+ +.|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34567777778888888888888888887742 23455666677778888888888888888776 3454 4577778
Q ss_pred HHHhhcCCChHHHHHHHHhC
Q 002834 734 VDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~ 753 (875)
+.+|.+.|++++|.+.+++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888888888888887776
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=76.98 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=76.8
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+..+...+...|++++|.+.|+++.. ..|+ ...|..++.+|.+.|++++|+..+++.. ..| ++..|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 344455566777777777777777766 3443 4467777777778888888887777764 334 456777888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
...|+++.|+..++++++++|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 88899999999999999999988876655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=75.55 Aligned_cols=92 Identities=5% Similarity=-0.015 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc-------cHHHH
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG-------NYVVM 799 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 799 (875)
.+..++..+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 56677888888888888888888774 445 5678888999999999999999999999999998765 56678
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 002834 800 SNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~ 820 (875)
|.+|...|++++|++.+++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999877644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-06 Score=85.84 Aligned_cols=162 Identities=8% Similarity=-0.052 Sum_probs=121.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDV------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN---PD--HV 692 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 692 (875)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999998875332 111 23444666677889999999999998864211 11 34
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-------CH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-------DC 759 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 759 (875)
+++.+...|...|++++|..+|+++.+.....|+ ...+..++.+|...|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6788888999999999999999998743222333 2588899999999999999999998763 111 14
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 002834 760 NVWGTLLGACRIHHEVELG-RVVANRLFEM 788 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 788 (875)
.++..+..++...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7889988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=74.13 Aligned_cols=108 Identities=8% Similarity=-0.063 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+......+.+.|++++|...|++..+ ..|+ ...|..++.+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 445555566677777777777777665 2343 4567777777777777777777777663 344 456777888888
Q ss_pred HhcCChhHHHHHHHHHhccc------CCCCccHHHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEME------ADNIGNYVVMSNLY 803 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 803 (875)
...|+++.|+..++++++++ |+++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77776666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.1e-06 Score=75.07 Aligned_cols=110 Identities=9% Similarity=-0.021 Sum_probs=67.7
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
.+..+...+...|++++|.++|++..+ ..|+ ...+..++.+|...|++++|++.+++.. ..| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444445555555555555555433 3343 3355555566666666666666655542 233 456677777
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
.++...|+++.|...++++++++|+++..+..++.+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 777788888888888888888888887777666665433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.7e-06 Score=78.12 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=58.5
Q ss_pred hcCCHHHHHH---HhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhhcCcHH
Q 002834 637 KCGSIFSASK---IFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-DHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 637 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g~~~ 708 (875)
..|++++|.+ .+...+.....+++.+...+...|++++|+..+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 444333234456666666666667777776666665541 1111 1233444555666666666
Q ss_pred HHHHHHHHhHHHhCCCC-C----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 709 EGLEIFRSIEKVQGIKP-T----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
+|.+.+++..+...-.+ + ...+..++.++...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554311111 1 123444455555555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.6e-07 Score=96.88 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=100.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG 740 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 740 (875)
...+...|++++|++.|++..+. .| +...+..+..++.+.|++++|.+.++++.+ +.|+ ...|..++.+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 33445566677777777766663 33 345566666667777777777777777665 3444 34666677777777
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHhcccCCCCccH---------
Q 002834 741 GQISDAYSLVNRMP-VEA-DCNVWGTLLGA--CRIHHEVELGRVVAN-----------RLFEMEADNIGNY--------- 796 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~-----------~~~~~~p~~~~~~--------- 796 (875)
|++++|.+.++++. ..| +...+..+..+ +...|++++|++.++ ++++++|+...++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~ 167 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTIS 167 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHH
Confidence 77777777776653 233 23444444444 556677777777777 6677766643321
Q ss_pred --HHHHHHHHhcCCchhHHH--HHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHH
Q 002834 797 --VVMSNLYAADARWDGVVE--IRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLS 860 (875)
Q Consensus 797 --~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 860 (875)
..+...+...+...+..- +....++. +.+.|....+........++.||- |-+..+..+.++
T Consensus 168 ~l~~lie~l~~~~~l~e~~v~~L~~~a~ei-l~~e~~~~~~~~~~~~~~~vigDi-HG~~~~l~~~l~ 233 (477)
T 1wao_1 168 FMKELMQWYKDQKKLHRKCAYQILVQVKEV-LSKLSTLVETTLKETEKITVCGDT-HGQFYDLLNIFE 233 (477)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHH-HHTSCSEEEECCCSSCEEEEECBC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HccCCCeEEeecCCCcceEEEeCC-CCCHHHHHHHHH
Confidence 122333444455443333 33333321 223343333322222334567774 666555444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=70.99 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...+++.. ..| +...|..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 333444444555555555555555441 22 23344445555555555555555554442 222 3455666666666
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
..|+++.|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67777777777777777777776666655554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-06 Score=91.61 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
...|..+...|.+.|++++|+..|++.++. .|+...+ . .+... +... -....|..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 446666777777777777777777777662 2322110 0 00000 0000 01357788888
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 813 (875)
+|.+.|++++|+..++++. ..| +...|..+..++...|+++.|+..++++++++|+++.++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888874 344 56888999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHH
Q 002834 814 E-IRKLMK 820 (875)
Q Consensus 814 ~-~~~~~~ 820 (875)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 7 455553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=72.27 Aligned_cols=95 Identities=8% Similarity=0.013 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+...|++++|...+++.. ..| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567788899999999999999999884 344 67888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999887764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=77.63 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.++....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 56777777777888888888888888888888888888888888888888888887766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=75.14 Aligned_cols=100 Identities=18% Similarity=0.041 Sum_probs=62.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-------------hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-------
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPT-------------PEQYASLVDLLARGGQISDAYSLVNRMP-V------- 755 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------- 755 (875)
....+.+.|++++|+..|+++.+ +.|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444555555555555555544 2222 1155566666666666666666655543 3
Q ss_pred CCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 756 EADC-NVW----GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 756 ~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
.|+. ..| .....++...|+++.|+..|+++++++|++.+.+--+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6654 667 7788888888888888888888888888887765433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=73.78 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+.+.|++++|.+.+++.. ..| +...|..+...+...|+++.|+..++++++.+|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4578889999999999999999999874 445 66888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++....
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=80.43 Aligned_cols=158 Identities=9% Similarity=-0.044 Sum_probs=118.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PD----HVVITA 696 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 696 (875)
.+..+...|++++|...+++..+ ++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667888999999999887544 111 12334666677778999999999999984322 22 225888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhC----CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCCC-HHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQG----IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEAD-CNVWG 763 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 763 (875)
+..+|...|++++|..+|+++.+... ..|. ...|..++.+|.+.|++++|.+++++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999875322 2222 2378899999999999999999988763 1222 46788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 002834 764 TLLGACRIHHE-VELGRVVANRLFEM 788 (875)
Q Consensus 764 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 788 (875)
.+..++...|+ ++.|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999995 69999999999875
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.6e-05 Score=75.16 Aligned_cols=191 Identities=8% Similarity=-0.062 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcC--CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCC-hHHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCG--SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM-GKAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 680 (875)
++.+..+.+.+....+.+..+++.-...+.+.| .+++++.+++++.+ .|..+|+.-...+...|. ++++++.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456666666777766667777766666666666 36777777776654 456677776666666676 477777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHhhc--------------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC-----
Q 002834 681 DMLELGVNPDHVVITAVLSACSHA--------------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG----- 740 (875)
Q Consensus 681 ~m~~~g~~p~~~~~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----- 740 (875)
++++.. +-|...|+.....+.+. +.+++++++++++.. ..|+ ...|+.+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccc
Confidence 777753 33444455444443333 456677777776665 3444 33454444444433
Q ss_pred ------CChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 741 ------GQISDAYSLVNRMP-VEADCNVWGTLLGACR-----IHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 741 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
+.++++++.++++. ..||. .|..+..+.. ..+..+.....+.++.++||...+.|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 34566666666663 45554 3443332221 23455566667777777777666666555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-06 Score=71.34 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+.+.|++++|.++++++. .+.+...|..+...+...|+++.|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4578889999999999999999999884 33466888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.3e-06 Score=72.99 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|...|++..+ ..|+ ...|..++.++...|++++|...+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 455566666677777777777777777766 2343 4567777777777788888877777763 334 457788888
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCC
Q 002834 767 GACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
.++...|+++.|+..++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888889999999999999998887
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-05 Score=74.72 Aligned_cols=129 Identities=19% Similarity=0.067 Sum_probs=86.2
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-- 689 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 689 (875)
..++..+...|...|++++|...|++... ....+++.+...|...|++++|+..+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445566666777777777766665432 12356788888999999999999999887763 1122
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
....+..+...+...|++++|...+++..+...-.++ ...+..++.++...|++++|.+.+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1234667777889999999999999988753211112 123566667777777777777666653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-05 Score=71.89 Aligned_cols=129 Identities=12% Similarity=-0.013 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLV 734 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 734 (875)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+. .| +...+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 3457778888889999999999999988852 335667777888889999999999999998773 34 456888899
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcc
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA--CRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~ 788 (875)
.++...|++++|.+.++++. ..| +...+..+..+ +...|+++.|...+++..++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999998874 334 44555444333 66778999999888876554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00016 Score=72.68 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=154.5
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCcch-HhcHHHHhhccc-chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc-C-CHHH
Q 002834 568 ENDFPNQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMA-SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC-G-SIFS 643 (875)
Q Consensus 568 ~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 643 (875)
+.+..++|++++.++... .|+..| ++.--..+...+ .++.+..+.+.+....+++..+++.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 334445667776666653 444433 222222333444 467777777777777777777777777777766 6 7889
Q ss_pred HHHHhccCCC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc------
Q 002834 644 ASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGK--------AALKVFSDMLELGVNPDHVVITAVLSACSHAGL------ 706 (875)
Q Consensus 644 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~------ 706 (875)
++++++++.+ .|..+|+--...+...|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 9999998776 56678887777777666666 9999999999863 4466777777777777765
Q ss_pred -HHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCCh--------------------HHHHHHHHhCCC--------C
Q 002834 707 -VDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQI--------------------SDAYSLVNRMPV--------E 756 (875)
Q Consensus 707 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~ 756 (875)
+++++++++++.. ..|+ ...|..+-..+.+.|+. .+..++..++.. .
T Consensus 223 ~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 7899999998877 4555 44777766677666653 455566666631 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cccCCCCccHHHHH
Q 002834 757 ADCNVWGTLLGACRIHHEVELGRVVANRLF-EMEADNIGNYVVMS 800 (875)
Q Consensus 757 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 800 (875)
+.+..+..|+..|...|+.++|.++++.+. +.||-....+...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 566788888899999999999999999997 67887666555444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-06 Score=92.95 Aligned_cols=118 Identities=5% Similarity=-0.004 Sum_probs=100.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
+...+.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456789999999999999988 4565 5689999999999999999999999884 555 5688999999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHH--HHhcCCchhHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNL--YAADARWDGVVEIRK 817 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 817 (875)
++++|++.++++++++|+++..+..++.+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988 889999999999876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-06 Score=73.23 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
+...+..++..+...|++++|.+.+++.. ..|+ ...|..+..++...|+++.|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 35578889999999999999999999874 6676 577888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 002834 801 NLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 801 ~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|...|++++|.+.++....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=78.86 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-ccHHHHHHHHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-GNYVVMSNLYA 804 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 804 (875)
..|..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++ .....+..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 477788888888899999888888774 444 567888888999999999999999999999999987 55555655543
Q ss_pred h
Q 002834 805 A 805 (875)
Q Consensus 805 ~ 805 (875)
.
T Consensus 144 ~ 144 (162)
T 3rkv_A 144 R 144 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-05 Score=76.14 Aligned_cols=177 Identities=11% Similarity=-0.013 Sum_probs=129.8
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc-HHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM--GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL-VDEGLEIF 714 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-~~~a~~~~ 714 (875)
+++++.+++.+.. .+..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776654 577899988888888884 899999999999863 4466677776667777787 69999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcC--------------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARG--------------GQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH----- 772 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~----- 772 (875)
+++.+ ..|+ ...|+....++.+. +.++++++++++.. ..| |..+|+.+.+.+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 99988 3444 44666666555543 56889999998875 445 779999888777655
Q ss_pred ------CChhHHHHHHHHHhcccCCCCccHHHHHHHHH---hcCCchhHHHHHHHHHh
Q 002834 773 ------HEVELGRVVANRLFEMEADNIGNYVVMSNLYA---ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 773 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 821 (875)
+-++.+++.++++++++|++.=.+..++.+.. ..|..++....+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34789999999999999998444333333222 35677777777777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=74.29 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=82.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEAD-------------CNVWGTLLGACRIHHEVELGRVVANRLFEM----- 788 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 788 (875)
..+...+..+...|++++|++.|++.. ..|+ ...|..+..++...|+++.|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667788889999999999999873 3343 238999999999999999999999999999
Q ss_pred --cCCCCccH----HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 789 --EADNIGNY----VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 789 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+|+++..| ...|.+|...|++++|++.+++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999998877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=87.11 Aligned_cols=146 Identities=10% Similarity=-0.059 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677778888888999999999998887 3555432 233444444443221 236788899
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH-hcCCchhH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA-ADARWDGV 812 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 812 (875)
+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 445 56889999999999999999999999999999999999999988844 45677777
Q ss_pred HHHHHHHHh
Q 002834 813 VEIRKLMKT 821 (875)
Q Consensus 813 ~~~~~~~~~ 821 (875)
.++++.|-.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 778777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=6.8e-06 Score=69.72 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+.+.|++++|...|+++.+ ..|+ ...|..++.++.+.|++++|+..+++.. ..| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455667778888888888888776 3453 4577778888888888888888887764 445 4577888888888
Q ss_pred hcCChhHHHHHHHHHhcccCCCC
Q 002834 771 IHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
..|+++.|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88999999999999999998765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-06 Score=72.40 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC---CccHHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-C---NVWGTLLGACRIHHEVELGRVVANRLFEMEADN---IGNYVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 804 (875)
++..+.+.|++++|.+.++++. ..|+ . ..+..+..++...|+++.|+..++++++..|++ +..+..+|.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555442 1222 1 345555555556666666666666666666666 445666666666
Q ss_pred hcCCchhHHHHHHHHH
Q 002834 805 ADARWDGVVEIRKLMK 820 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~ 820 (875)
..|++++|++.++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=82.17 Aligned_cols=129 Identities=8% Similarity=-0.033 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------hhhHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD----------------HVVITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456788888888999999999999998884 444 3678888889999999999999999998
Q ss_pred HHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 002834 719 KVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELG-RVVANRLFEM 788 (875)
Q Consensus 719 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 788 (875)
+ +.|+ ...|..++.+|...|++++|+..++++. ..| +..++..+..++...|+.+.| ...++++++.
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4454 5588899999999999999999998874 455 557788888888888988888 4566766643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-05 Score=66.88 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 34567778888888899999999999888752 335666777777888899999999999888772 344 5578888
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 775 (875)
+.++.+.|++++|.+.+++.. ..| +...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 889999999999999888874 344 556777777777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.6e-05 Score=84.68 Aligned_cols=168 Identities=8% Similarity=-0.070 Sum_probs=134.9
Q ss_pred CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-
Q 002834 640 SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM----------GKAALKVFSDMLELGVNPDHVVITAVLSACSHAG- 705 (875)
Q Consensus 640 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g- 705 (875)
.-++|++.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777776654 355678877777777776 899999999999853 334567777777788888
Q ss_pred -cHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------
Q 002834 706 -LVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG-QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH-------- 772 (875)
Q Consensus 706 -~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-------- 772 (875)
+++++++.++++.+ ..|. ...|+....++.+.| .+++++++++++. ..| |..+|+....++...
T Consensus 123 ~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999988 4454 457888888888888 8999999999985 455 678999988887663
Q ss_pred ------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 773 ------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 773 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+.++.+.+.++++++++|++..+|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=67.78 Aligned_cols=103 Identities=11% Similarity=-0.046 Sum_probs=64.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP----EQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLG 767 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 767 (875)
+...+...|++++|.+.|+++.+. .|+. ..+..++.++.+.|++++|...++++. ..|+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666552 2222 255556666666666666666666552 2232 455666777
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
++...|+++.|+..++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 77788888888888888888888876655544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=66.30 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC---CHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA---DCNVWGTLLG 767 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~ 767 (875)
..+..+...+...|++++|...|+++.+. .+.+...+..++.++...|++++|.+.+++.. ..| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444555666666666666666666552 11234456666666777777777777666653 333 3566777777
Q ss_pred HHHhc-CChhHHHHHHHHHhcccCCCC
Q 002834 768 ACRIH-HEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 768 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++... |+++.|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 888888888888888877664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-06 Score=72.98 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=40.4
Q ss_pred CChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 741 GQISDAYSLVNRMP-V---EAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
|++++|+..+++.. . .|+ ..+|..+..++...|+++.|+..++++++++|+++..+..++.+|...|++++|++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444554444442 2 132 244555555555555555555555555555555555555555555556666665555
Q ss_pred HHHH
Q 002834 816 RKLM 819 (875)
Q Consensus 816 ~~~~ 819 (875)
+++.
T Consensus 84 ~~~a 87 (117)
T 3k9i_A 84 LLKI 87 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-06 Score=78.41 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=80.9
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CCh----------------hhH
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDV----------------VML 659 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~~ 659 (875)
......+.++.+.+.++......+.....+..+...+.+.|++++|...|++... .+. .+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3444556677777776655554444566677888999999999999999987553 222 455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA 738 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 738 (875)
..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHH
Confidence 566666666666666666666666531 22344455555566666666666666666554 2333 234444444444
Q ss_pred cCCChHHHH
Q 002834 739 RGGQISDAY 747 (875)
Q Consensus 739 ~~g~~~~A~ 747 (875)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=67.56 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
++..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666667777777777666663 333 44455555666666666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.3e-06 Score=86.28 Aligned_cols=136 Identities=7% Similarity=-0.024 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 735 (875)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ...|. ...|..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 45666666777777777777777766541 11100 000111110 12232 457888999
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 813 (875)
+|.+.|++++|++.++++. ..| +...|..+..++...|+++.|+..++++++++|+++..+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 555 56888899999999999999999999999999999999999999999999888887
Q ss_pred H
Q 002834 814 E 814 (875)
Q Consensus 814 ~ 814 (875)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=79.77 Aligned_cols=112 Identities=8% Similarity=-0.080 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|...|+++.+ ..| +...|..++.+|.+.|++++|++.+++.. ..| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456677788899999999999999999987 355 45688999999999999999999998874 556 457888888
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
.++...|+++.|+..++++++++|+++..+....+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 99999999999999999999999988766554444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=9.1e-06 Score=70.05 Aligned_cols=94 Identities=9% Similarity=0.083 Sum_probs=74.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-------CccHHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-------IGNYVV 798 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 798 (875)
..+..++..+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 356667777777777777777777663 23356777788888888899999999999999988876 677889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999998877654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-06 Score=70.98 Aligned_cols=92 Identities=11% Similarity=-0.007 Sum_probs=64.1
Q ss_pred cCcHHHHHHHHHHhHHHhCC---CCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH
Q 002834 704 AGLVDEGLEIFRSIEKVQGI---KPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 777 (875)
.|++++|+..|+++.+ . .|+ ...+..++.+|.+.|++++|++.+++.. ..| ++.++..+..++...|+++.
T Consensus 3 ~g~~~~A~~~~~~al~---~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA---SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHH---cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 4666777777777655 3 233 3467777777777888888887777764 334 45777788888888899999
Q ss_pred HHHHHHHHhcccCCCCccHHH
Q 002834 778 GRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~ 798 (875)
|+..++++++..|+++.....
T Consensus 80 A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988765443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=69.40 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL 736 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 736 (875)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++++.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555555556666666666666655532 2233444444555555555555555555554421 10
Q ss_pred hhcCCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 737 LARGGQISDAYSLVNRMPVEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..++ ..+|..+..++...|+++.|...++++++..| ++.....++.++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 34555666666677777777777777777776 4555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=72.58 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PDH----VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA 731 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 731 (875)
.++..+...+...|++++|+..+++..+.... ++. ..+..+...+...|++++|.++++++.+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 34555666666666666666666665542100 110 2344444455555555555555555443211001100
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccHHHHHHHHHh
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNYVVMSNLYAA 805 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~ 805 (875)
.....+..+...+...|+++.|+..+++++++.+.. +..+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 002344455555666666666666666666553221 3356778888888
Q ss_pred cCCchhHHHHHHHHH
Q 002834 806 DARWDGVVEIRKLMK 820 (875)
Q Consensus 806 ~g~~~~A~~~~~~~~ 820 (875)
.|++++|.+.++...
T Consensus 142 ~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHL 156 (164)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 888888888766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=82.86 Aligned_cols=151 Identities=10% Similarity=0.009 Sum_probs=81.9
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
....+..+...+.+.|++++|...|++... |+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345567888899999999999999987654 22211 122233333332221 13677788889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHH-HhcCChhH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGAC-RIHHEVEL 777 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~-~~~~~~~~ 777 (875)
.+.|++++|+..++++.+ +.|+ ...|..++.+|...|++++|...++++. ..|+. .++..+.... ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4554 5688999999999999999999999985 56644 5555555553 34567888
Q ss_pred HHHHHHHHhcccCCCCc
Q 002834 778 GRVVANRLFEMEADNIG 794 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~ 794 (875)
+...++++++..|+++.
T Consensus 318 a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhhCCCCCCCC
Confidence 99999999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=83.81 Aligned_cols=186 Identities=8% Similarity=-0.045 Sum_probs=131.0
Q ss_pred HhHhcCCHHHHHHHhccCCC--C---C---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh
Q 002834 634 LYAKCGSIFSASKIFQCHPQ--K---D---------------VVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHV 692 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 692 (875)
.+.+.|++++|.+.|..+.+ + + ..++..++..|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34566777777777765432 0 0 1246778899999999999999998876521 112221
Q ss_pred ----hHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCC
Q 002834 693 ----VITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEA 757 (875)
Q Consensus 693 ----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p 757 (875)
..+.+...+...|+.++|.++++...... +..+. ...+..++..|...|++++|..++++.. .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223335556789999999998876532 23333 3478889999999999999999988762 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-------ccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 758 D-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-------GNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 758 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
. ..++..++..|...||+++|+..+++++...|..+ ..+..++.+|...|+|++|.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 35677888889999999999999999988754432 34667788889999999999864443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.4e-06 Score=67.60 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNYV 797 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 797 (875)
+...+..++..+.+.|++++|++.+++.. ..| ++..|..+..++...|+++.|+..++++++++|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888888889998888888774 344 56888888899999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~ 817 (875)
.++.++...|++++|++.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 89999999998888876554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=3e-05 Score=83.02 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=93.5
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhC--CC---CC-hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHH
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQG--IK---PT-PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWG 763 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~ 763 (875)
.+...|++++|..++++..+... +. |+ ..+++.|+.+|...|++++|..++++.. ..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888877765432 22 22 3477888888888888888888877752 34443 6678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEM-----EADNIGN---YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.|...|..+|++++|+..+++++++ .|++|.+ ...|+..+.++|++.+|+.+++.++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998874 6777654 4578888999999999999999998754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-05 Score=62.62 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++..|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678888889999999999999999999999999999999999999999999999998776553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.5e-05 Score=68.55 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=72.2
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD---- 690 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 690 (875)
..++..+...|...|++++|...+++..+ ++. .++..+...+...|++++|+..+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999997664 221 4788899999999999999999999876311 111
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 691 HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 691 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
...+..+...+...|++++|.+++++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23455666677788888888888877755
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3.3e-05 Score=61.37 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+...|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777777788888887777663 333 55778888888888999999999999999999999999999998887
Q ss_pred hcC
Q 002834 805 ADA 807 (875)
Q Consensus 805 ~~g 807 (875)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.2e-05 Score=60.02 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 756 EADCNVWGTLLGACRIHHE---VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
++++..|..+..++...++ .+.|+..++++++++|+++.+...+|.++++.|++++|++.++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567888888888765554 7999999999999999999999999999999999999999999988653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.1e-05 Score=78.86 Aligned_cols=112 Identities=4% Similarity=-0.037 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002834 691 HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGAC 769 (875)
Q Consensus 691 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 769 (875)
...+..+...+.+.|++++|++.|+++.+.. |+.. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888776621 1100 001111111 1223 347788899999
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.6e-05 Score=82.06 Aligned_cols=64 Identities=5% Similarity=-0.087 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|+..+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999999999999999999999999999998887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00043 Score=74.26 Aligned_cols=121 Identities=9% Similarity=-0.086 Sum_probs=71.8
Q ss_pred HHhHhcCCHHHHHHHhccCCC--------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCC-hhhHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ--------K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV----NPD-HVVITAVL 698 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-~~~~~~ll 698 (875)
..+...|+.+.|..+++.... + -..++..+...|...|++++|+.++++....-. .|. ...+..++
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 334445556666555553321 1 123566677777777888888877777654211 111 23466666
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|...|++++|..++++......-.++ ...+..++..+...|++++|...+.+.
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777888888888887776543211111 235666777777778887777665443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.3e-05 Score=69.66 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC-----------CchhHHHHHHHHHhC
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADA-----------RWDGVVEIRKLMKTR 822 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~ 822 (875)
++.|+..++++++++|+++.+|..+|++|...| ++++|++.+++..+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999875 899999988877653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.6e-05 Score=63.88 Aligned_cols=76 Identities=7% Similarity=-0.017 Sum_probs=56.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 746 AYSLVNRM-PVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 746 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|++.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..|..+|.+|...|++++|++.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2334 4567777777788888888888888888888888888888888888888888888887766544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=60.94 Aligned_cols=110 Identities=5% Similarity=-0.075 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVV 781 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 781 (875)
+.++|.++|++..+ .+ .|+. . |...|...+.+++|++++++.....++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45555555555544 22 1111 1 455555555555555555555433445555555555554 5566666666
Q ss_pred HHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655 455666677777776 677777777666665544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.5e-05 Score=67.90 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=42.4
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 744 SDAYSLVNRMP-VEA-DCNVWGTLLGACRIH-----------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 744 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++|+..+++.. +.| +..+|..+..+|... |++++|++.++++++++|+++.....+. ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555442 333 234555555555544 5899999999999999999864433322 235
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|-++.-.+..
T Consensus 136 ka~el~~~~~~ 146 (158)
T 1zu2_A 136 KAPQLHAEAYK 146 (158)
T ss_dssp THHHHHHHHHH
T ss_pred hCHhccCcccc
Confidence 55555444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00065 Score=74.70 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHcC-ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCc----------HHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 667 AMHG-MGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAGL----------VDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 667 ~~~g-~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
.+.| ..++|++.++++.. +.|+.. .|+.--.++.+.|+ ++++++.++++.+ ..|. ...|..-
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR 113 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHR 113 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 3444 45789999999998 466654 46655556666666 9999999999987 4555 4488888
Q ss_pred HHHhhcCC--ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc--
Q 002834 734 VDLLARGG--QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH-EVELGRVVANRLFEMEADNIGNYVVMSNLYAAD-- 806 (875)
Q Consensus 734 ~~~~~~~g--~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 806 (875)
..++.+.| ++++++++++++. ..| +..+|+.-..+....| ..+.+.+.++++++.+|.|..+|...+.++...
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 88899999 7799999999995 444 6799999999988888 899999999999999999999999999998874
Q ss_pred ------------CCchhHHHHHHHHH
Q 002834 807 ------------ARWDGVVEIRKLMK 820 (875)
Q Consensus 807 ------------g~~~~A~~~~~~~~ 820 (875)
+++++|++..+...
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHH
Confidence 55688888655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=77.80 Aligned_cols=115 Identities=9% Similarity=-0.068 Sum_probs=89.1
Q ss_pred HhhcCCChHHHHHHHHhCC---------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHH
Q 002834 736 LLARGGQISDAYSLVNRMP---------VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYV 797 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~ 797 (875)
.+..+|++++|+.++++.. ..|+. .++++|..+|...|++++|+..++++++. .|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999987762 23333 67889999999999999999999999875 566654 678
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
.||.+|..+|++++|+.++++..+.. .+ ..| .+||...++..+|......+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~-~~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAIL-LV----------------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HH----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-HH----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999877654321 11 122 3699999999999888766554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00023 Score=58.91 Aligned_cols=65 Identities=5% Similarity=-0.109 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...|..+...+...|+++.|+..++++++++|+++..+..+|.+|...|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999999999999988877653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00031 Score=74.06 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=79.7
Q ss_pred hhcCCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHHH
Q 002834 737 LARGGQISDAYSLVNRMP------VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYVV 798 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~ 798 (875)
+.++|++++|++++++.. +.|+ ..+++++..+|...|++++|+..++++++. .|++|. .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666665441 2222 255677777788888888888888888764 455554 5788
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
||.+|..+|++++|+.++++..+. ..+ ..| .+||...+++..|++....|+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i-~~~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI-MRV----------------THG-REHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HHH----------------HTC-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-HHH----------------hcC-CCChHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987665432 111 122 3799999999999998887763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0028 Score=54.77 Aligned_cols=112 Identities=8% Similarity=-0.087 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHH
Q 002834 670 GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISD 745 (875)
Q Consensus 670 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 745 (875)
++.++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44433 66677788889999999999877 2 356677788888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccC
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 790 (875)
|.+++++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998655677888888888887 7899999999999988753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00054 Score=54.07 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|..+...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|++.+++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 467888888899999999999999999999999999999999999999999999998877654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0006 Score=56.85 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=52.1
Q ss_pred HHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 710 GLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 710 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
|++.|+++.+ ..|+ ...+..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555533 3343 3466666666667777777776666653 233 45667777777777888888888888888
Q ss_pred cccCCCC
Q 002834 787 EMEADNI 793 (875)
Q Consensus 787 ~~~p~~~ 793 (875)
++.|.+.
T Consensus 81 ~~~~~~~ 87 (115)
T 2kat_A 81 AAAQSRG 87 (115)
T ss_dssp HHHHHHT
T ss_pred Hhccccc
Confidence 8777543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0004 Score=73.02 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCcee
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACS 831 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s 831 (875)
.++++|..+|...|++++|+..++++++. .|++|. .+..||.+|..+|++++|+.++++..+.. .+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~----- 414 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EV----- 414 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HH-----
Confidence 45666777777777777777777777653 455544 57889999999999999999876654321 11
Q ss_pred EEEeCCEEeEEecCCCCCCChHHHHHHHH
Q 002834 832 WIEVERKNNAFMAGDYSHPRRDMIYWVLS 860 (875)
Q Consensus 832 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 860 (875)
.. ..+||...+++..|+
T Consensus 415 -----------~l-G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 -----------AH-GKDHPYISEIKQEIE 431 (433)
T ss_dssp -----------HT-CTTCHHHHHHHHHHH
T ss_pred -----------Hc-CCCChHHHHHHHHHh
Confidence 12 236898888877765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.006 Score=61.16 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
++.++..+...+...|+++.|+..++++++++|. ...|..+|+++.-.|++++|.+.+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555556777777777777777653 44556666777777777777765433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=67.80 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=86.9
Q ss_pred CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHH
Q 002834 108 DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSL 187 (875)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 187 (875)
.+..|..+-.+....+ ...+|++.| .+ .-|+..|..++.++.+.|.++.-...+...++. ..++.+=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 3456778888888887 777776544 12 347788999999999999999888888766554 4555667789
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHH
Q 002834 188 TSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWM 238 (875)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 238 (875)
+-+|++.+++.+-.+++. .||..-...+-.-|...|.++.|.-+|..+
T Consensus 123 i~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 999999998766544443 367777777788888888888887776554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.03 Score=57.32 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=158.4
Q ss_pred CCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 002834 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSA 155 (875)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~ 155 (875)
..+.+|+.|..+..+.+.+.+|+.-|= +..|+..|..+|.+..+.| .+++-+..+.-.++.. -++..=+.|+-+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~---ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKA---RESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTC---CSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh---cccccHHHHHHH
Confidence 467789999999999999999887763 4467788889999999999 9999988887776653 445566789999
Q ss_pred hhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC------------------------CC
Q 002834 156 CARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED------------------------KD 211 (875)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~ 211 (875)
+++.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+.. .+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999888777653 47776777778888888888888888877641 47
Q ss_pred eeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhh
Q 002834 212 VVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNA 291 (875)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (875)
+.||-.+-.+|...+.+.-|.-.--.+.- .|+ -+..++..+...| -+++...++...+ |.......+|+-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G---~f~ELIsLlEagl--glErAHmGmFTE 268 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRG---YFEELITMLEAAL--GLERAHMGMFTE 268 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTC---CCTTSTTTHHHHT--TSTTCCHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCC---CHHHHHHHHHHHh--CCCchhHHHHHH
Confidence 78899988888888887776654333321 111 1112333333333 3333333333332 223335667777
Q ss_pred HHHHhHhcCChhHHHHHhhhcCC----C-------CccchHHHHHHHHcCCCHHHHH
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKS----R-------DLVSWNAIIAGYASNDEWLKAL 337 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~ 337 (875)
|.-.|++- +.++-.+.++.... | ....|.-++-.|++-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77777776 34444444443322 1 3345667776676666666553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0036 Score=62.76 Aligned_cols=156 Identities=10% Similarity=0.030 Sum_probs=101.6
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhh---cC-----cH
Q 002834 642 FSASKIFQCHPQKDVVMLTAMIGGYA--MHGM---GKAALKVFSDMLELGVNPDH-VVITAVLSACSH---AG-----LV 707 (875)
Q Consensus 642 ~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~---~g-----~~ 707 (875)
.++....... ..+..+|...+.+.. ..++ ..+|+.+|++.++ ..|+. ..+..+..++.. .+ ..
T Consensus 181 ~e~~r~~~~~-p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKIL-PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHHS-CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 3334444433 347778888776654 3333 4789999999999 57774 344444444431 11 11
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 708 DEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
......++........+.+..+|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.+.|.+.+++++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11112222211111224456688888777777899999999999986 66887777777777888999999999999999
Q ss_pred cccCCCCccHHHHHH
Q 002834 787 EMEADNIGNYVVMSN 801 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~ 801 (875)
.++|..+ .|....+
T Consensus 338 rL~P~~~-t~~~~~~ 351 (372)
T 3ly7_A 338 NLRPGAN-TLYWIEN 351 (372)
T ss_dssp HHSCSHH-HHHHHHH
T ss_pred hcCCCcC-hHHHHhC
Confidence 9999876 3444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0021 Score=51.62 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCN-VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
.+..+.+.|++++|++.++++. ..| +.. .|..+..++...|+++.|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4455666777777777777663 344 446 777777778888888888888888888888887765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.016 Score=55.56 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=69.0
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhcccCCC-CccHHHHHHHHHhc-CCchh
Q 002834 743 ISDAYSLVNRMP-VEAD---CNVWGTLLGACRI-----HHEVELGRVVANRLFEMEADN-IGNYVVMSNLYAAD-ARWDG 811 (875)
Q Consensus 743 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 811 (875)
..+|...+++.. ..|+ ...|..|...|.. .|+.++|++.+++++++.|+. +.+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 466777777664 6777 3577778777777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 002834 812 VVEIRKLMKTRDLKKPAA 829 (875)
Q Consensus 812 A~~~~~~~~~~~~~~~~~ 829 (875)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999888776654443344
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0025 Score=54.57 Aligned_cols=90 Identities=13% Similarity=-0.045 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG---QISDAYSLVNRMP-VE-A--DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~ 777 (875)
+....+.+.|.+..+ .-.++..+...+..++.+.+ +.++++.++++.. .. | +...+-.|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 355666666666654 22366777777788888877 5568888777763 23 4 24666677777788888888
Q ss_pred HHHHHHHHhcccCCCCccH
Q 002834 778 GRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~ 796 (875)
|.+.++++++.+|+|..+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHH
Confidence 8888888888888765543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0033 Score=66.09 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=61.8
Q ss_pred hcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWGTLL 766 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 766 (875)
..|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34667777777776655321 2222 2367777777777777777777776651 34443 5577888
Q ss_pred HHHHhcCChhHHHHHHHHHhcc-----cCCCCcc
Q 002834 767 GACRIHHEVELGRVVANRLFEM-----EADNIGN 795 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~ 795 (875)
..|..+|++++|+..+++++++ .|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888774 5666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=50.21 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566667777777777777777777777642 22344566666677777777777777776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0017 Score=52.18 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=52.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc-cHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG-NYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
....+...|+++.|+..++++++.+|+++. .+..+|.+|...|++++|++.++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445677889999999999999999999999 9999999999999999999988877653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0063 Score=64.09 Aligned_cols=98 Identities=7% Similarity=-0.114 Sum_probs=54.6
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWGT 764 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 764 (875)
+...|++++|..++++..+... +.|+ ..+++.++.+|...|++++|+.++++.. ..|+. ..++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3445555566555555543211 1122 2355556666666666666666655541 23332 45666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcc-----cCCCCccHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEM-----EADNIGNYVV 798 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~ 798 (875)
|...|..+|++++|+..+++++++ .|++|.+-.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777777777777777777777663 5766654433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=50.43 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 745 (875)
....+.+-|.+..+.|. ++..+...+..++++.+ ++++|+.+|++..+. . .| ....+..+.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34556666777666654 66666666677777777 677888888888773 1 35 24567777788888999999
Q ss_pred HHHHHHhCC-CCCCH
Q 002834 746 AYSLVNRMP-VEADC 759 (875)
Q Consensus 746 A~~~~~~~~-~~p~~ 759 (875)
|.++++.+. .+|+.
T Consensus 90 A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 998888874 56654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=47.21 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP---------VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.|+..+.+.|+++.|..+++.+. ..+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34444455555555555544431 1234567888888999999999999999999999999877654443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.45 Score=38.98 Aligned_cols=141 Identities=7% Similarity=0.030 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+.+.+- ...-.++.+|.+.|...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~~n~~s- 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLN- 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCC-
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHHhcchH-
Confidence 44578888999999888763 34444555665555555666667777666543333221 12334555565555433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
.....-+.....+|.-++-.+++..++..+|-+|...+.++++|.+.|+..+|.+++++.=++|++
T Consensus 92 --------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 --------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 233444566678888899888998887778888999999999999999999999999998888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.043 Score=42.98 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHhhcCCC---hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 724 KPTPEQYASLVDLLARGGQ---ISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+++...+..++.++...+. .++|..++++.. ..|+ +..+..+...+...|+++.|+..++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456677777777764444 688888888874 5664 46677777778889999999999999999999843
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=2.9 Score=45.82 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVI----TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 746 (875)
+.+.|...|....+.+ ..+.... ..+.......+...++...+..... ..++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 7788888888876543 2233222 2222233344435566666665433 223333334444445577899999
Q ss_pred HHHHHhCCCCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHhc
Q 002834 747 YSLVNRMPVEA-DCNVWGTLL-GACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 747 ~~~~~~~~~~p-~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 787 (875)
..+++.|+..+ +..-|..-+ .+....|+.+.|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999887443 223333333 345567888889888888875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.15 Score=59.36 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888776664 567788888888888888888888887643 22333344445565554444
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
-+.+.. .| .+..-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 433332 11 1222333455566666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.17 Score=58.97 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=60.8
Q ss_pred HhcCCHHHHHH-HhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 636 AKCGSIFSASK-IFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 636 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
...+++++|.+ ++..+. +......++..+.+.|..++|+++.+.-. . -.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHHHHH
Confidence 34677777777 554443 11223666677777777777776653211 1 122345567788887765
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
+.+ .+...|..+++.+.+.|+++.|.+.|.++.
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 333 345677888888888888888888887763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.26 Score=40.45 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD---AYSLVNRMP-VE-A--DCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~a 778 (875)
....+.+-|.+... .+ .|+..+-..++.++.+.....+ ++.++++.- .. | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554444 22 2666666677778888776655 777777764 22 3 124455666778899999999
Q ss_pred HHHHHHHhcccCCCCccHHH
Q 002834 779 RVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~ 798 (875)
.+..+.+++.+|+|..+..+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999988765443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.055 Score=51.85 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=65.6
Q ss_pred cCCHHHHHHHhccCCCCCh--hhHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhh
Q 002834 638 CGSIFSASKIFQCHPQKDV--VMLTAMIGG-YAMH--GM------GKAALKVFSDMLELGVNPD---HVVITAVLSACSH 703 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~ 703 (875)
.++..+-.+.+.+....++ ..|..++.+ ++.. |. ...|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444444555544333 356665543 3332 22 3566666777766 4666 3456666666666
Q ss_pred -----cCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcC-CChHHHHHHHHhC
Q 002834 704 -----AGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARG-GQISDAYSLVNRM 753 (875)
Q Consensus 704 -----~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 753 (875)
-|+.++|.++|++..+ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3788888888877766 5563 55666677777663 6677766666665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.41 Score=40.01 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHhhcCCChH---HHHHHHHhCC-CCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 724 KPTPEQYASLVDLLARGGQIS---DAYSLVNRMP-VEA-DC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.|+..+--.+..++.+....+ +++.++++.- ..| +. ...-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 456666666677777766543 4666666652 233 22 444455566777788888888888888888876543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.08 Score=59.02 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
...|...|+++.|.++++++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455777899999999999999999999999999999999999999999988876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.11 Score=42.74 Aligned_cols=90 Identities=7% Similarity=-0.018 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhccc-C-CCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCce
Q 002834 756 EADCNVWGTLLGACRIHHEV---ELGRVVANRLFEME-A-DNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAAC 830 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 830 (875)
.|+..+-..+.+++...++. .+++.+++.++..+ | ..-...+.||-.+++.|++++|.+..+.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-------- 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 47778888888888877655 45999999999887 5 34557788999999999999999988887652
Q ss_pred eEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 002834 831 SWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVT 871 (875)
Q Consensus 831 s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 871 (875)
+|...+.....+.+..+|.++|+
T Consensus 104 ------------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 ------------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 46667777777777888888884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.11 Score=41.72 Aligned_cols=64 Identities=8% Similarity=-0.040 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC-------CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA-------DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.-...++..+...|+++.|+..++++++..+ ..+.++..|+.+|.+.|++++|+...+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344566788889999999999999999998642 2345788999999999999999998877654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.99 Score=39.68 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred HHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHH
Q 002834 397 SFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKE 476 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 476 (875)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.+.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345677888888777765 4566788888888888888888888877643 3334344444566666665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 477 THGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
+-+.....|- ++.....+.-.|+++++.++|.+...
T Consensus 82 la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 5555555543 24445556677888888877766544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.89 E-value=11 Score=42.96 Aligned_cols=297 Identities=10% Similarity=0.032 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCCChhHH-HHHHH-hcCC-CCcchHHH-HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHH--
Q 002834 391 VGNALVSFYAKCSDMEAA-YRTFL-MICR-RDLISWNS-MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHF-- 464 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A-~~~~~-~~~~-~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-- 464 (875)
...++.+++..+|--.+. ++... -+.+ .+-.-+.+ .--+....|+.++++.+++..+..+-..+..+-...+-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 445677777777754332 11111 0111 11111222 233566778888888877765542212233333333332
Q ss_pred hhccCchhhHHHHHHHHHHhcC-CCCC---CchhHHHHHHHHHHhcCC-HHHHHHHHHhhccCCCccc--HH--HHHHHh
Q 002834 465 CTTVLREGMVKETHGYLIKTGL-LLGD---TEHNIGNAILDAYAKCRN-IKYAFNVFQSLLEKRNLVT--FN--PVISGY 535 (875)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~p~~~~--~~--~l~~~~ 535 (875)
....|....+..++...+...- .... +...+..++.-++.-.|. -+++.+.+..+....+..+ .. ++...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 2334443445565555444321 0000 112223334334433443 2455666655554423221 11 233345
Q ss_pred hcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHh---cHHHHhhcccchH
Q 002834 536 ANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIM---SLLPVCSQMASVH 608 (875)
Q Consensus 536 ~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~---~ll~a~~~~~~~~ 608 (875)
.-.|+.+....++..+.+..... ...+.-++...|+.+.+-.+++.+... .++ .-|. .+.-+|+..|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 67788888888887765543333 344445556788999888888888763 232 2233 3344788889988
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChhhHH--HHHHHHHHcCCh-HHHHHHHHHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVVMLT--AMIGGYAMHGMG-KAALKVFSDMLE 684 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~li~~~~~~g~~-~~A~~~~~~m~~ 684 (875)
...+++..+.....++..-...+.-+....|+.+.+.++++.+.+ .|..+-. .+.-+....|.. .+++.++..+..
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 888888888765433444333333344446666667777765443 3443333 334444445554 678889999875
Q ss_pred CCCCCChhh
Q 002834 685 LGVNPDHVV 693 (875)
Q Consensus 685 ~g~~p~~~~ 693 (875)
.+|..+
T Consensus 658 ---D~d~~V 663 (963)
T 4ady_A 658 ---DPVDFV 663 (963)
T ss_dssp ---CSSHHH
T ss_pred ---CCCHHH
Confidence 455444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=3.6 Score=36.13 Aligned_cols=128 Identities=9% Similarity=0.026 Sum_probs=70.0
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345567777777766654 3566777777777777777777777776532 22233334445565554444
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
-+.... .| -++.-..++.-.|+++++.+++.+...-|... -....+|-.+.|.++.+++
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333322 11 12233334445577777777776664333211 1123466667777766554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.35 Score=39.82 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=41.7
Q ss_pred CCCChhHHHHHHHHhhcCCCh---HHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 723 IKPTPEQYASLVDLLARGGQI---SDAYSLVNRMP-VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 723 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
-.|+..+--.++.++.+.... .+++.++++.- ..|. ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 345555555556666665544 34555555542 2331 2445555566667777777777777777777765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.34 E-value=19 Score=41.21 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=75.7
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChh-hHH---HHHHHHHHcCChHHHH
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVV-MLT---AMIGGYAMHGMGKAAL 676 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~ 676 (875)
...|+.+....+...+.....++..-..++.-++.-.|+.+.+..+++.+.. .+.. -|. ++.-+|+..|+.....
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq 580 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK 580 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3445666666666665543211222222222223344555555555444332 2322 222 2334556667766666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh-HHHHHHHHhCC
Q 002834 677 KVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI-SDAYSLVNRMP 754 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 754 (875)
.++..+.+.. ..+ +.-..++. ++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|++.+..+.
T Consensus 581 ~LL~~~~~d~-~d~-VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 581 RLLHVAVSDS-NDD-VRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHCS-CHH-HHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhccCC-cHH-HHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6777777631 222 22223333 44455665556666654443 2345444444444444444443 57777777776
Q ss_pred CCCCHHH
Q 002834 755 VEADCNV 761 (875)
Q Consensus 755 ~~p~~~~ 761 (875)
.++|..+
T Consensus 657 ~D~d~~V 663 (963)
T 4ady_A 657 KDPVDFV 663 (963)
T ss_dssp TCSSHHH
T ss_pred cCCCHHH
Confidence 6666544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.28 Score=41.31 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=66.4
Q ss_pred CCChhhHHHHHHHHhhcCcH------HHHHHHHHHhHHHhCCCCChh-HHHHHHH------HhhcCCChHHHHHHHHhCC
Q 002834 688 NPDHVVITAVLSACSHAGLV------DEGLEIFRSIEKVQGIKPTPE-QYASLVD------LLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 754 (875)
+-|..+|...+...-+.|+. ++.+++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777777777777888 888888888776 4667521 2211111 1122367777777776662
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 755 --VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 755 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
.+.=+.+|......-.++||+..|.+++.+++.+.|.+..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 1112667777777777777777777777777777776543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.99 E-value=1.1 Score=38.68 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCh-------hhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLEL-GVNPDH-------VVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
-+..+...|.++.|+-+.+.+... +..|+. .++..+..++...|.+..|...|++..+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 355566677777777776665432 123332 24555666788888888888888886554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.89 E-value=0.57 Score=39.47 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=53.0
Q ss_pred CChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChh----hHHHHHHH---HhhcCcHHHHHHHHHHhHHH
Q 002834 654 KDVVMLTAMIGGYAMHGMG------KAALKVFSDMLELGVNPDHV----VITAVLSA---CSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~ll~a---~~~~g~~~~a~~~~~~~~~~ 720 (875)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666664 555432 12222221 12245666666666666553
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 721 QGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 721 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
.-+. ...|.....--.|+|++..|.+++...
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 345555555556666666666666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.86 E-value=10 Score=37.10 Aligned_cols=165 Identities=8% Similarity=0.092 Sum_probs=92.5
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHH----HHHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALS----LFLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
++..-|.+.+++++|.+++..- ...+.+.|+...|.+ +++-..+.++.++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3444466677777777765432 222345566555444 3444455667777666555555544422
Q ss_pred -----chHHHHHHHHHHHHhcC-C--CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHc---CChHH
Q 002834 606 -----SVHLLRQCHGYVIRACF-D--GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMH---GMGKA 674 (875)
Q Consensus 606 -----~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 674 (875)
+.+-.........+.|. + ++.+...+...|.+.|++.+|+..|-.....+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 22333334444444433 3 8899999999999999999999988643322344444444333322 22222
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
+ +...-..++. |...|+...|..+|+...+.
T Consensus 187 ~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 V--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 1 1111222333 45677899999998877653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.65 E-value=1.7 Score=41.08 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh----HHHHHHHHhhcC
Q 002834 665 GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE----QYASLVDLLARG 740 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 740 (875)
.+.+.|+.++|++....-++.. +-|...-..++..+|-.|+++.|.+-++.+.+ +.|+.. .|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888888777752 44555556677788888999999988887766 566643 33333332
Q ss_pred CChHHHHHHHHh--CC-CCCCHHHHHHHH-HHH--HhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 741 GQISDAYSLVNR--MP-VEADCNVWGTLL-GAC--RIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 741 g~~~~A~~~~~~--~~-~~p~~~~~~~l~-~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
....+ ++|.. .| +.-.+..|..++ .+. ...|+.+.|.+.-.++++.-|..++.
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11111 12211 12 111233455444 333 35689999999999999988877664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.26 E-value=2.1 Score=35.78 Aligned_cols=69 Identities=16% Similarity=-0.040 Sum_probs=43.1
Q ss_pred CCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH
Q 002834 688 NPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC 759 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 759 (875)
.|+..+-..+..++.+.. +..+++.++++..+. .| .......|.-++.+.|++++|.++++.+. .+|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455555444455555544 445677777777662 33 23456667777788888888888877764 56654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.81 E-value=21 Score=37.29 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHH-hCCCC--C--h
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHAGLVDEGLEIFRSIEKV-QGIKP--T--P 727 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p--~--~ 727 (875)
....|...|-..|++.+|..++.++...-...+ ...+...++.|...+++..|..+++++... ....+ + .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345677888899999999999998864312222 234566677899999999999999987532 22222 2 2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|.+++..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36788889999999999998877665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.35 E-value=1.1 Score=36.83 Aligned_cols=76 Identities=17% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHH
Q 002834 687 VNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCN 760 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 760 (875)
-.|+..|-..+..++.+.. +..+++.++++..+. .|. .+.+..|.-++.+.|++++|.++++.+. .+|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3455555444555555554 455788888888762 252 4467777888888999999998888874 677654
Q ss_pred HHHHH
Q 002834 761 VWGTL 765 (875)
Q Consensus 761 ~~~~l 765 (875)
--.+|
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.27 E-value=21 Score=35.17 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=91.4
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHH----HHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSL----FLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3444466677777777665332 1223455555444333 344455566677666555555554443
Q ss_pred c-----hHHHHHHHHHHHHhc--CC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHH
Q 002834 606 S-----VHLLRQCHGYVIRAC--FD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 606 ~-----~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
. ..-..+....-.+.| .. ++.+...+...|.+.+++.+|+..|-....+.+..+..++.-+...+...
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---- 184 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH---- 184 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG----
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc----
Confidence 2 122233333344444 33 89999999999999999999999986433333355544443333322211
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.++...-..++. |...+++..|..+++...+
T Consensus 185 ----------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ----------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 5566788888887776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.34 E-value=26 Score=34.23 Aligned_cols=169 Identities=9% Similarity=0.004 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhh
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNL----LNCMLMEGIRPDSITILTIIHFCT 466 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 466 (875)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 667777778888899998888643 23345666776665554 555566788888888877777765
Q ss_pred ccCchh-hHHHHHHHHHH----hcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcC---
Q 002834 467 TVLREG-MVKETHGYLIK----TGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANC--- 538 (875)
Q Consensus 467 ~~~~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~--- 538 (875)
.....+ .-.++...+++ .|- ....++.....+...|.+.|++.+|..-|-.-... +...+..++--+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHHHHHHHHhcCC
Confidence 533221 23344444443 332 11356777888888899999999988877532211 344555554444333
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
|...++--.+ ...+-.|.-.++...|..+|+...
T Consensus 182 ~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333322111 112223456677777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.16 E-value=1.2 Score=38.33 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=59.1
Q ss_pred CCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHhhcCCChHHHHHHHHhCC--
Q 002834 686 GVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-------EQYASLVDLLARGGQISDAYSLVNRMP-- 754 (875)
Q Consensus 686 g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 754 (875)
|+.|... ++..-+..+...|.++.|.-+..-+....+..|+. .++..+++++...|.+..|...+++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4555433 23334456666777777776666655433333431 245556666777777777666666531
Q ss_pred --CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 755 --VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 755 --~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
.-+.. .....+ +. . ........+ +.+...-+.++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~-~~---~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPST-GN---S-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccccc-cc---c-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00100 000000 00 0 000000111 223345567899999999999999998753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=86.00 E-value=13 Score=30.61 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHH
Q 002834 402 CSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYL 481 (875)
Q Consensus 402 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 481 (875)
+|++......+-.+. .+....+..+..+..+|+-++-.+++..+.. +.+|++.....+-.+|.+.|+...+.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444433322 2334456667778888888888888887544 34556666666666666666666666666666
Q ss_pred HHhcC
Q 002834 482 IKTGL 486 (875)
Q Consensus 482 ~~~~~ 486 (875)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 66654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.57 E-value=5.3 Score=44.60 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
-|...|+++.|+++-++... ..|+ -.+|..|+.+|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888866 5665 4588888888888888888888888886
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.29 E-value=34 Score=34.76 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=88.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChhhHH---
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHG-MGKAALKVFSDMLELGVNPDHVVIT--- 695 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~--- 695 (875)
...|...|.+.|+.++..+++..... ........++..+.... ..+.-+++..+..+-. .-+..+|.
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35667777888888877777776654 12234455666665432 3333444444443210 11122331
Q ss_pred ---HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-----CCCCHHH--
Q 002834 696 ---AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-----VEADCNV-- 761 (875)
Q Consensus 696 ---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~-- 761 (875)
.+...|...|++.+|.+++.++.+...-..+ .+.|..-+..|...|++.++...+.+.. ..|++..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 4566777788888888887777664322112 2345566677777788777777776552 1233322
Q ss_pred -HHHHHHH-HH-hcCChhHHHHHHHHHhcc
Q 002834 762 -WGTLLGA-CR-IHHEVELGRVVANRLFEM 788 (875)
Q Consensus 762 -~~~l~~~-~~-~~~~~~~a~~~~~~~~~~ 788 (875)
.....+. +. ..+++..|-..|-.+++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2222222 33 467787777777666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.23 E-value=8.4 Score=39.56 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQYASL 733 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 733 (875)
...++..+...|++.+|+..+..+... -+-+...+..++.++...|+..+|++.|+++.+ ..|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445677788899999999999888875 355777889999999999999999999988754 36899987654433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.49 E-value=8.7 Score=29.70 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
+.-+..+-++.+....+.|++....+.++||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456666777777788999999999999999999999999999888764 3333456666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 875 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.7 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.69 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.63 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.62 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.62 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.85 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.1e-20 Score=196.38 Aligned_cols=350 Identities=12% Similarity=0.087 Sum_probs=161.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 427 LDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 427 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
...+.+.|++++|++.|+++++.. |+ ...+..+...+...|+++.|...++.+++.. +.+...+..+...|.+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhhh
Confidence 445667788888888888887653 43 3344444455555566666666666555543 3344455555555555
Q ss_pred cCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 506 CRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
.|++++|...+...... | +...+....... ...+....+........
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAAL-------------------------------VAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------------------HHHSCSSHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccc-------------------------------ccccccccccccccccc
Confidence 56666665555554442 1 222222222222 33333333333333322
Q ss_pred HCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHH
Q 002834 584 AQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLT 660 (875)
Q Consensus 584 ~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 660 (875)
.... ................+....+...........+.....+..+...+...|++++|...+++..+ .+..+|.
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T d1w3ba_ 129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccc-ccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHH
Confidence 2211 11112222222233333333334444444433333444444444444445555555444443322 2233444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
.+...+...|++++|+..+++....+ +.+...+..+..++.+.|++++|.+.|+++.+ +.|+ ...+..++.++..
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHH
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 44444555555555555555444431 22233333444444445555555555554443 3333 2244444455555
Q ss_pred CCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 740 GGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.|++++|.+.++... .+.+...+..+...+...|+++.|+..++++++++|+++.++..+|.+|...|++++|++.++
T Consensus 284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555444432 222334444444444444555555555555555555555555555555555555555555444
Q ss_pred H
Q 002834 818 L 818 (875)
Q Consensus 818 ~ 818 (875)
+
T Consensus 364 ~ 364 (388)
T d1w3ba_ 364 E 364 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.7e-20 Score=195.72 Aligned_cols=367 Identities=11% Similarity=0.049 Sum_probs=254.9
Q ss_pred HHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchh
Q 002834 397 SFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILTIIHFCTTVLREG 472 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 472 (875)
..+.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|+..|++.++.. |+ ..++..+...+...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccc
Confidence 344455666666666665522 244556666666677777777777777666542 33 345556666666777777
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK--RNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
.|...+....+.. +................+....+.......... ................+....+...+.+
T Consensus 85 ~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 85 EAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 7777777766655 344444555555555555555555555443332 2334444444555444555555544444
Q ss_pred hhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchH
Q 002834 551 IYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 551 ~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
.....+.. +..+...+...|++++|... +..+.+..+.+...
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-----------------------------------~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHH-----------------------------------FEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-----------------------------------HHHHHHHCTTCHHH
T ss_pred hhccCcchhHHHHhhcccccccCcHHHHHHH-----------------------------------HHHHHHhCcccHHH
Confidence 43322221 44444444444455444444 44444444445556
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhh
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSH 703 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 703 (875)
+..+...+...|++++|...|++... .+...|..+...+...|++++|+..|++..+. .|+ ..++..+..++..
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 66777888888888888888876543 45677888899999999999999999999884 454 5678888889999
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
.|++++|.+.++..... .+.+...+..++.++...|++++|++.+++.. ..| ++.+|..+..++...|+++.|+..
T Consensus 284 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998773 34456688899999999999999999999874 566 457888999999999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
++++++++|+++.+|..||++|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998885
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-13 Score=141.15 Aligned_cols=224 Identities=15% Similarity=0.086 Sum_probs=157.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCC
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS 640 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 640 (875)
.....+.+.|++++|+..|+++.+. .|+ +...+..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~---------------------------------~~~a~~~lg~~~~~~~~ 68 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPK---------------------------------HMEAWQYLGTTQAENEQ 68 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTT---------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------------------CHHHHHHHHHHHHHcCC
Confidence 4556677777777777777777664 343 33333444455555555
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh----------------HHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV----------------ITAVLSAC 701 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------------~~~ll~a~ 701 (875)
+++|...|++..+ .+...|..++..|...|++++|++.+++.... .|+... ....+..+
T Consensus 69 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
T d1fcha_ 69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence 5555555554332 23455666666666666666666666666552 232111 11122234
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGR 779 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 779 (875)
...+...+|.+.|+++.+.....++...+..++.++...|++++|+..+++.. ..| +..+|..+..++...|+++.|+
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 45567888899998887743334456678889999999999999999998874 445 5688999999999999999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 780 VVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 780 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++++++++|+++.+|..+|.+|...|++++|++.+++..+
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-12 Score=133.51 Aligned_cols=267 Identities=14% Similarity=0.063 Sum_probs=192.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhc
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQ 603 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 603 (875)
+-.....+.+.|++++|...|+++.+.++.. |..+..+|...|++++|+..|.+..+. .|+ ...+..+...+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccc
Confidence 3345667889999999999999998877665 888999999999999999999998874 444 3455555566677
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
.|+.+.|.+.+..+....+............... .+.......+..+...+...+|.+.|.+..
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG----------------AGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhhh----------------cccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777776666554422211111000000 011111112233445567788999998887
Q ss_pred HCCC-CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CH
Q 002834 684 ELGV-NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DC 759 (875)
Q Consensus 684 ~~g~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~ 759 (875)
+... .++...+..+...+...|++++|...|++... ..|+ ...|..++.+|.+.|++++|++.++++. ..| ++
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 7422 23456677778889999999999999999977 3455 5588899999999999999999999874 455 46
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----------HHHHHHHHHhcCCchhHHHH
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN-----------YVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 815 (875)
.+|..++.+|...|+++.|+..++++++++|++... +..++.++...|+++.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 789999999999999999999999999999987664 34567777778888766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=7e-09 Score=106.38 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=131.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCC-------CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----ChhhHH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHP-------QK----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP----DHVVIT 695 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~ 695 (875)
+...+...|++..|...+.... .+ ....+..+...+...|+++.+...+.+........ ....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3444555566655555554322 11 11345566778888999999999998887642221 223445
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-----CHHHHHH
Q 002834 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-----DCNVWGT 764 (875)
Q Consensus 696 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ 764 (875)
.....+...++...+...+.+.......... ...+..++..+...|++++|...+++.. ..| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5556777889999999888877664332222 2245667778889999999999998874 222 1244566
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc------ccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFE------MEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+..++...|+++.|...+++++. ..|..+..+..+|.+|...|++++|.+.++...
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77888889999999999999874 345566788899999999999999999776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=6.2e-09 Score=103.69 Aligned_cols=219 Identities=10% Similarity=0.063 Sum_probs=153.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
|+.+..++.+.+.+++|+.+++++.+. .|+ +..+++.....+...
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~---------------------------------~~~a~~~r~~~l~~l 90 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAA---------------------------------NYTVWHFRRVLLKSL 90 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT---------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCC---------------------------------ChHHHHHHHHHHHHh
Confidence 455555666666666666666666653 444 444455555555555
Q ss_pred C-CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 G-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
| ++++|+..+++..+ .+..+|+.+...+...|++++|++.++++.+.. +-+...|..+...+.+.|++++|++.+
T Consensus 91 ~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~ 169 (315)
T d2h6fa1 91 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV 169 (315)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5 47777777776543 466788888888889999999999999998842 334677888888899999999999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcCCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARGGQ------ISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
+++.+ +.|+ ...|..+..++.+.|. +++|++.+.++. ..| +...|..+...+.. ...+.+...++++
T Consensus 170 ~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~ 245 (315)
T d2h6fa1 170 DQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQL 245 (315)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHH
T ss_pred HHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence 99987 4564 4477777777666554 578888877763 455 56888888776544 4568888999999
Q ss_pred hcccCCCCcc--HHHHHHHHHhc--CCchhHHHHHH
Q 002834 786 FEMEADNIGN--YVVMSNLYAAD--ARWDGVVEIRK 817 (875)
Q Consensus 786 ~~~~p~~~~~--~~~l~~~~~~~--g~~~~A~~~~~ 817 (875)
++++|+.... +..++.+|... ++.+.+...++
T Consensus 246 ~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 246 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999876554 45677777653 55555555433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.3e-09 Score=106.94 Aligned_cols=189 Identities=7% Similarity=-0.010 Sum_probs=156.1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG-MGKAALKVFSDMLELGVNPD-HVVITAVLSAC 701 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~ 701 (875)
+++-+...+.+.+..++|++.++++.+ .+..+|+....++...| ++++|+..+++..+. .|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 344556678888999999999998775 45678999999988877 589999999999884 454 66788888899
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC----
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHE---- 774 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~---- 774 (875)
.+.|++++|++.++++.+ +.|+ ...|..++.++.+.|++++|++.++++. ..| +...|+.+...+...++
T Consensus 123 ~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 999999999999999987 5665 5589999999999999999999999985 555 66889888777665554
Q ss_pred --hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 775 --VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 775 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.|...++++++++|+++..|..++.++...| .+++.+..+...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 678999999999999999999999999877655 5777777666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.6e-08 Score=101.97 Aligned_cols=286 Identities=9% Similarity=-0.069 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC-CC------cccHHHHHHHhhcCCChHHHHHHHHhhhcC----CCcc-----HHH
Q 002834 498 AILDAYAKCRNIKYAFNVFQSLLEK-RN------LVTFNPVISGYANCGSADEAFMTFSRIYAR----DLTP-----WNL 561 (875)
Q Consensus 498 ~li~~~~~~g~~~~A~~~~~~~~~~-p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~ 561 (875)
.....+...|++++|+.++++.... |+ ..++..+...|...|++++|...+++.... +..+ +..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3445566778888888888776543 32 134555666676777777777777665321 1111 455
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHC----CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh
Q 002834 562 MIRVYAENDFPNQALSLFLKLQAQ----GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK 637 (875)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 637 (875)
+...+...|++..+...+.+.... +..+.. . .......+...+..
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~-~------------------------------~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP-M------------------------------HEFLVRIRAQLLWA 145 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-H------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh-H------------------------------HHHHHHHHHHHHHH
Confidence 556667777777777766664331 111110 0 11122344556666
Q ss_pred cCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----hhhHHHHHHHHhh
Q 002834 638 CGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG--VNPD----HVVITAVLSACSH 703 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ll~a~~~ 703 (875)
.|+++.|...+..... ....++..+...+...++..++...+.+..... .... ...+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 6777776666654321 123345556667777888888888877665421 1111 1234445557778
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcC
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRMP-------VEAD-CNVWGTLLGACRIHH 773 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~ 773 (875)
.|+.++|...+++..+.....+. ...+..++.++...|++++|...++++. ..|+ ..++..+..++...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 89999999988877542111111 2355667888899999999998887762 3343 356777788888999
Q ss_pred ChhHHHHHHHHHhcccCCCCc---------cHHHHHHHHHhcCCchhHHH
Q 002834 774 EVELGRVVANRLFEMEADNIG---------NYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~ 814 (875)
+.+.|++.+++++++.+.... .+..+...+...++.+++.+
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999988654221 12233344556677777765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=9e-10 Score=111.75 Aligned_cols=227 Identities=4% Similarity=-0.186 Sum_probs=155.7
Q ss_pred cCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcc--cchHHHHHHHHHHHHhcCCCchHH-HHHHHHhHhcCCHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQM--ASVHLLRQCHGYVIRACFDGVRLN-GALLHLYAKCGSIFSA 644 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 644 (875)
.|++++|+..++...+. .|+. ..+..+..++... ++.+.+...+..+....++....+ ......+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 33455566666665543 2322 2222332333333 335566666666666655533333 3455677778999999
Q ss_pred HHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh
Q 002834 645 SKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQ 721 (875)
Q Consensus 645 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 721 (875)
+..++...+ .+..+|+.+...+...|++++|...+++..+. .|+.. .....+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 999998776 45678999999999999998887766655442 23222 223344556677778888877766
Q ss_pred CCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHH
Q 002834 722 GIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 722 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 798 (875)
..| +...+..++..+...|+.++|...+.+.. ..|+ ..+|..++.++...|+.++|+..++++++++|.++..|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 334 34466667778888899999998887764 5664 4778888889999999999999999999999999998888
Q ss_pred HHHHHHh
Q 002834 799 MSNLYAA 805 (875)
Q Consensus 799 l~~~~~~ 805 (875)
|++.+..
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8877764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=5.4e-08 Score=96.73 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHH
Q 002834 641 IFSASKIFQCHPQ----KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRS 716 (875)
Q Consensus 641 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 716 (875)
.++|..+|++..+ .+...|...+..+...|+.+.|..+|+++++.........|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3555555554321 234456666666666666666666666666532112233455666666666666666666666
Q ss_pred hHHHhCCCCC-hhHHHHHHHH-hhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 717 IEKVQGIKPT-PEQYASLVDL-LARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 717 ~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+ ..|+ ...|...+.. +...|+.+.|..+++.+. .+.++..|..++......|+++.|+.++++++...|.+
T Consensus 160 al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 ARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 644 2332 2233333332 223456666666666653 23345666666666666666666666666666665554
Q ss_pred Cc----cHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 793 IG----NYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 793 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+. .|..+.......|+.+.+.++.+++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 344444444555666666666665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=3.8e-08 Score=95.34 Aligned_cols=190 Identities=9% Similarity=-0.082 Sum_probs=103.5
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
...|+.+.|...+..+++..+.++.++..+..+|.+.|++++|++.|+++.+ .+..+|..+..+|...|++++|+..
T Consensus 48 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 127 (259)
T d1xnfa_ 48 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 127 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 3333333333333333333334555666667777777777777777776554 3455677777778888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC----hHHHHHHHHhCC
Q 002834 679 FSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ----ISDAYSLVNRMP 754 (875)
Q Consensus 679 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 754 (875)
|++..+.. +.+......+..++.+.+..+....+...... ..+....+.. +..+..... .+.+...+....
T Consensus 128 ~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (259)
T d1xnfa_ 128 LLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNT 202 (259)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877742 22333333333344555555555444444433 2233223322 222222112 222222111111
Q ss_pred -CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 755 -VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 755 -~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
..|+ ..+|..+...+...|+++.|+..++++++.+|++...|
T Consensus 203 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 203 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2232 24566677777788888888888888888888765433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=9.7e-08 Score=94.84 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=150.0
Q ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-C-hhhHHHHHHHHHHcCChHHHHHHH
Q 002834 605 ASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-D-VVMLTAMIGGYAMHGMGKAALKVF 679 (875)
Q Consensus 605 ~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 679 (875)
+..+.+..+++.+++...+ +..++...+..+.+.|+.+.|..+|+++.. | + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3457788888888876555 888889999999999999999999998654 2 3 347999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC----
Q 002834 680 SDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---- 754 (875)
Q Consensus 680 ~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 754 (875)
+++.+.+ +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..++++..
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998863 333344443333 234568999999999999884 23335688899999999999999999999862
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 755 VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 755 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
..|+ ...|..++..-..+|+.+.+..+.+++.++.|++...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 3332 3689999998899999999999999999999987553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=5.4e-09 Score=101.54 Aligned_cols=190 Identities=14% Similarity=0.018 Sum_probs=137.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSAC 701 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~ 701 (875)
.++..+...|.+.|++++|...|++..+ .++.+|+.+..+|...|++++|++.|+++.+. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 3556678899999999999999998664 57789999999999999999999999999984 454 55677888899
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH----hcCCh
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACR----IHHEV 775 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----~~~~~ 775 (875)
...|++++|.+.|++..+ ..|+ ......+...+.+.+..+.+..+..... ..+....+.. ...+. ..+..
T Consensus 116 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 999999999999999987 3444 3344444555555565554444433332 1222222221 12211 22334
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.+...+.......|..+..|..+|.+|...|++++|++.++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555566666777778899999999999999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=1.5e-09 Score=110.16 Aligned_cols=243 Identities=7% Similarity=-0.095 Sum_probs=171.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchH----hcHHH-------HhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 570 DFPNQALSLFLKLQAQGMKPDAVTI----MSLLP-------VCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 570 ~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~-------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..++|+.++.+..+. .|+..+. ..++. .....+.++.+..+++.+.+..+++...+..+...+...
T Consensus 43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 3346777777777653 5665432 11111 233455678888889999988888888887777776665
Q ss_pred C--CHHHHHHHhccCCC---CChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 639 G--SIFSASKIFQCHPQ---KDVVMLTAM-IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 639 g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
+ +.++|...++++.. ++...|... ...+...+++++|+..++++.+.. +-+...|..+..++...|++++|..
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 5 48899988887654 455666544 456667889999999999888753 2345667777778888888888777
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 713 IFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VE-ADCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.++...+ +.|+. ......+...+..+++...+.... .. ++...+..+...+...++.+.|...+.++++.+|
T Consensus 200 ~~~~~~~---~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 200 QGRLPEN---VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CCSSCHH---HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhHH---hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 6665544 12221 122233444566666776665542 23 3445566667777788999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 791 DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 791 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.++..+|++|...|++++|++.++...+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=9.4e-08 Score=78.57 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=65.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHE 774 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 774 (875)
...+...|++++|+..|+++.+ ..|+ ...|..++.+|...|++++|+..++++. .+.++..|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 3455666677777777766665 3343 3356666666666666666666666653 23345666666666667777
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
++.|+..++++++++|+++.++..++++.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 77777777777777777766666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.3e-07 Score=77.77 Aligned_cols=90 Identities=9% Similarity=0.012 Sum_probs=81.9
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCc
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARW 809 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 809 (875)
.-++.+...|++++|+..+++.. ..| ++..|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 35677889999999999999984 445 6788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 002834 810 DGVVEIRKLMKT 821 (875)
Q Consensus 810 ~~A~~~~~~~~~ 821 (875)
++|++.++...+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=7e-08 Score=89.10 Aligned_cols=119 Identities=9% Similarity=-0.063 Sum_probs=91.7
Q ss_pred CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHH
Q 002834 689 PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTL 765 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l 765 (875)
|+...+......+.+.|++++|+..|+++.+ +.|+ ...|..++.+|.+.|++++|+..++++. ..|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 6677777778888888999999999988877 3454 4578888888888888888888888875 5664 5778888
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
..++...|+++.|...++++++++|++...+...++.+...++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888877766665555555444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=6.5e-08 Score=78.76 Aligned_cols=90 Identities=8% Similarity=0.002 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
+..++..+.+.|++++|+..+++.. ..| ++.+|..+..++...|+++.|+..++++++++|+++.++..||.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456778888999999999998874 455 56889999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHH
Q 002834 808 RWDGVVEIRKLM 819 (875)
Q Consensus 808 ~~~~A~~~~~~~ 819 (875)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.7e-07 Score=80.98 Aligned_cols=116 Identities=5% Similarity=-0.009 Sum_probs=95.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
....|.+.|++++|...|+++.+ +.|+ ...|..++.+|...|++++|++.++++. ..| +..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34567889999999999998887 4565 4588889999999999999999998874 455 5588999999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHH--HhcCCchhHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLY--AADARWDGVVEI 815 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 815 (875)
+++.|+..++++++++|+++..+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888877664 345567777764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-06 Score=79.36 Aligned_cols=141 Identities=11% Similarity=-0.033 Sum_probs=93.6
Q ss_pred HHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHH
Q 002834 632 LHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGL 711 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 711 (875)
...+...|++++|++.|+++..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456677888888888888777777778888888888888888888888887742 233456666777778888888888
Q ss_pred HHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 712 EIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
+.|++.... .+++.. .| ...|. ..+++ ..++..+..++...|+++.|.+.+++++++.
T Consensus 91 ~~~~kAl~~--~~~n~~~~~-------~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDY-------KILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEEEC-------GGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchHHH-------HHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888777652 111110 00 00000 01111 2445566777788888888888888888888
Q ss_pred CCCC
Q 002834 790 ADNI 793 (875)
Q Consensus 790 p~~~ 793 (875)
|+..
T Consensus 151 ~~~~ 154 (192)
T d1hh8a_ 151 SEPR 154 (192)
T ss_dssp CSGG
T ss_pred CCcc
Confidence 8753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=1.6e-07 Score=86.54 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=77.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
|+...+......|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|+++.+ +.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 455666777888889999999999999888852 34456677777789999999999999988865 6776 448888
Q ss_pred HHHHhhcCCChHHHHHHHHhC
Q 002834 733 LVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~ 753 (875)
++.+|.+.|++++|+..++++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999888876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=7.5e-07 Score=80.58 Aligned_cols=117 Identities=10% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 777 (875)
.+...|++++|++.|+++ .+|+...|..++.+|...|++++|++.+++.. ..| ++..|..+..++...|+++.
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 345566666666666543 23455566666666777777777776666663 334 44667777777777777777
Q ss_pred HHHHHHHHhcccCCCC----------------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 778 GRVVANRLFEMEADNI----------------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|...++++++..|.++ ..+..+|.+|...|++++|.+.++....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777776655543 2356789999999999999998777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=7.2e-07 Score=78.90 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=75.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..|..++.+|.+.|++++|+..++... ..| ++.+|..++.++...|+++.|+..++++++++|+++.+...++.++..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 357778899999999999999998885 556 668899999999999999999999999999999999999999999887
Q ss_pred cCCchhHHH
Q 002834 806 DARWDGVVE 814 (875)
Q Consensus 806 ~g~~~~A~~ 814 (875)
.++..+..+
T Consensus 143 ~~~~~~~e~ 151 (170)
T d1p5qa1 143 IRRQLAREK 151 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=6.4e-07 Score=78.47 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=82.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
+...+..|.+.|++++|+..++++. ..| +...|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3345677889999999999999985 455 56889999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh
Q 002834 808 RWDGVVEIRKLMKT 821 (875)
Q Consensus 808 ~~~~A~~~~~~~~~ 821 (875)
++++|++.++....
T Consensus 93 ~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 93 KFRAALRDYETVVK 106 (159)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.3e-07 Score=75.26 Aligned_cols=107 Identities=13% Similarity=-0.055 Sum_probs=86.1
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCCh---HHHHHHHHhCC-CCCCH---HHHHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQI---SDAYSLVNRMP-VEADC---NVWGTLL 766 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p~~---~~~~~l~ 766 (875)
..++..+...+++++|.+.|++... +.|+ ..++..++.+|.+.++. ++|+.+++++. ..|++ .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3577788888999999999999977 4454 56888899999876654 56999998874 44543 3688888
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
.+|...|+++.|++.++++++++|++..+...+..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887776665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.9e-06 Score=84.29 Aligned_cols=188 Identities=6% Similarity=-0.037 Sum_probs=127.0
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGV---NPD--HVVIT 695 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~ 695 (875)
....+|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678889999999888886543 22 25788999999999999999999998765211 111 23455
Q ss_pred HHHHHHh-hcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-------H-HH
Q 002834 696 AVLSACS-HAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-------C-NV 761 (875)
Q Consensus 696 ~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------~-~~ 761 (875)
.+...|. ..|++++|.+.++++.+......+ ..++..++.++...|++++|.+.++++. ..|+ . ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 5666664 469999999999988753322222 3368889999999999999999998863 1111 1 22
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc--H---HHHHHHHHh--cCCchhHHHHHH
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGN--Y---VVMSNLYAA--DARWDGVVEIRK 817 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~---~~l~~~~~~--~g~~~~A~~~~~ 817 (875)
+...+..+...++.+.|...++++.+++|..+.. + ..+...|.. .+++++|+..+.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344455667899999999999999999976543 2 334444444 245777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.31 E-value=3.3e-06 Score=74.38 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=77.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..|..++.+|.+.|++++|+..+++.. ..| +..+|..+..++...|+++.|+..++++++++|+++.+...++.+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356678889999999999999998885 344 668899999999999999999999999999999999999999999888
Q ss_pred cCCchhH-HHHHHHHH
Q 002834 806 DARWDGV-VEIRKLMK 820 (875)
Q Consensus 806 ~g~~~~A-~~~~~~~~ 820 (875)
.++..+. .++++.|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 7766543 33555553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=4.2e-07 Score=74.64 Aligned_cols=113 Identities=6% Similarity=0.017 Sum_probs=89.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhcccCCC--CccHHHHHHH
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGACRIH---HEVELGRVVANRLFEMEADN--IGNYVVMSNL 802 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 802 (875)
...+++.+...+++++|.+.|++.. . +.++.++..+..++... ++.++|+..++++++.+|.+ +.++..||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3457788888999999999999985 4 44668888999888764 45678999999999998865 4478999999
Q ss_pred HHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 803 YAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
|...|++++|++.+++..+. .|...+....+..+.+++++
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--------------------------~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--------------------------CcCCHHHHHHHHHHHHHHcC
Confidence 99999999999998887652 25555666666677777665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.5e-06 Score=73.00 Aligned_cols=111 Identities=7% Similarity=-0.023 Sum_probs=81.9
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRI 771 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 771 (875)
..+......+.+.|++++|+..|+++.+.....+.... ........+ ...++..+..+|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh-------HHHHHHHHHHHHHh
Confidence 34455566788888999999988888774322222110 000000000 12356778888899
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+++.|+..++++++++|+++.+|..+|.+|...|++++|+..++...+
T Consensus 75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=7.2e-06 Score=80.00 Aligned_cols=164 Identities=7% Similarity=-0.029 Sum_probs=125.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLEL----GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQ 729 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 729 (875)
|......|...|++++|++.|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.+++..+.+.-..+ ...
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 455678899999999999999988763 21222 356888888999999999999999988764322222 346
Q ss_pred HHHHHHHhhc-CCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----
Q 002834 730 YASLVDLLAR-GGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN----- 795 (875)
Q Consensus 730 ~~~l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----- 795 (875)
+..++..|.. .|++++|++.+++.. ...+ ..++..+...+...|+++.|...+++++...|.++..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6777777754 699999999998763 1111 2557778888999999999999999999999887643
Q ss_pred --HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 796 --YVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 796 --~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...+.++...|+++.|.+.+....+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456677888899999999998876543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=7e-06 Score=70.80 Aligned_cols=132 Identities=7% Similarity=-0.050 Sum_probs=89.8
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIH 772 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 772 (875)
.+..-...+.+.|++.+|+..|+++.+.....+... -......... ....++.++..++.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 344555667778888888888877765221111100 0000000000 0124567788888889
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCCh
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRR 852 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~ 852 (875)
|+++.|+..++++++++|.++.+|..+|.+|...|++++|+..++..... .|..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------------------------~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTC
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC
Confidence 99999999999999999999999999999999999999999987775542 2566
Q ss_pred HHHHHHHHHHHHHHHh
Q 002834 853 DMIYWVLSILDEQIKD 868 (875)
Q Consensus 853 ~~~~~~~~~l~~~~~~ 868 (875)
.++...+..+..++++
T Consensus 135 ~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 135 LDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3e-06 Score=70.58 Aligned_cols=90 Identities=9% Similarity=0.121 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH-------HHH
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV-------VMS 800 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-------~l~ 800 (875)
+-.+++.+.+.|++++|++.|++.. ..| +..+|..+..++...|+++.|+..++++++++|+++..+. .+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4457778888888888888888774 444 5688889999999999999999999999999999887544 566
Q ss_pred HHHHhcCCchhHHHHHHHH
Q 002834 801 NLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 801 ~~~~~~g~~~~A~~~~~~~ 819 (875)
.++...+++++|++.++..
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 6778888999999987654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=1.6e-05 Score=68.51 Aligned_cols=128 Identities=7% Similarity=-0.059 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
...+......+.+.|++.+|+..|.+.+.. .|.... ............ ....+|..++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 346777788899999999999999998873 221110 000000000001 11346778999
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
+|.+.|++++|++.++++. ..| +..+|..++.++...|+++.|+..++++++++|+|+.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999874 455 66899999999999999999999999999999999988777766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=6e-06 Score=72.84 Aligned_cols=131 Identities=8% Similarity=0.014 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLL 737 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 737 (875)
+......+...|++++|+..|++.++. +..........+. ..+.|. ...|..++.++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 444556666777777777777776541 0100000111110 112232 34677888999
Q ss_pred hcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 738 ARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
.+.|++++|+..++++. ..| ++.+|..+..++...|+++.|+..++++++++|+++.++..+..++....+..+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 555 568899999999999999999999999999999999988888887765544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.1e-07 Score=96.62 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMPVEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
.+..++..+.+.|+.++|...++... .++ ...+..++..++..|+++.|+..|+++++++|+++.+|..||.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 34444444444444444443333221 111 1233444444444455555555555555555555555555555555555
Q ss_pred CchhHHHH
Q 002834 808 RWDGVVEI 815 (875)
Q Consensus 808 ~~~~A~~~ 815 (875)
++.+|+..
T Consensus 201 ~~~~A~~~ 208 (497)
T d1ya0a1 201 DHLTTIFY 208 (497)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 55554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.04 E-value=0.00015 Score=69.29 Aligned_cols=179 Identities=10% Similarity=-0.031 Sum_probs=113.5
Q ss_pred CCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HhhcCcHHHHH
Q 002834 639 GSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSA--CSHAGLVDEGL 711 (875)
Q Consensus 639 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a--~~~~g~~~~a~ 711 (875)
.+...|...+..... .+...+..+...+.. .++.+.|...+++..+.|..+....+ ..... .........+.
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~ 130 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAV 130 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHH
Confidence 344455555544332 233444444444443 35677888888888776532221111 11111 12345677777
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 002834 712 EIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVAN 783 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 783 (875)
..+..... ..+...+..|...|.. ..+...+..+++......++.....+...+.. .+|.+.|+..++
T Consensus 131 ~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~ 206 (265)
T d1ouva_ 131 EYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 206 (265)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHh
Confidence 77766544 2345566667777764 45677777777776545566777677666654 568999999999
Q ss_pred HHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 002834 784 RLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 784 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 824 (875)
++.+.+ ++..+..||.+|.. ..+.++|.+.+++..+.|.
T Consensus 207 ~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 207 KACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 998874 57788899999986 4489999999888776664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=1.1e-05 Score=71.02 Aligned_cols=109 Identities=5% Similarity=-0.029 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 772 (875)
+......+...|++++|++.|+++.+.. +. ........+. ....| ....|..+..++...
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~~----------~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh---hh----------hhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 4445556677788888888887765410 00 0000011110 11123 345678888888999
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.++...+
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=3.6e-05 Score=67.48 Aligned_cols=112 Identities=4% Similarity=-0.044 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002834 691 HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACR 770 (875)
Q Consensus 691 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 770 (875)
...+.-....+.+.|++++|+..|+++.......+.... ++. ...+.+ ...++..+..++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHH
Confidence 344555666777778888888877776653222221110 000 000000 1235667777888
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.++....
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.79 E-value=4.4e-05 Score=61.39 Aligned_cols=86 Identities=8% Similarity=-0.060 Sum_probs=43.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
+...+.+.|++++|+..|++.+.. .| +...|..+..++.+.|++++|...|+++.+ +.|+ ...+..++.+|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 344455555555555555555553 23 234444444455555555555555555544 3333 3344555555555
Q ss_pred CCChHHHHHHHHh
Q 002834 740 GGQISDAYSLVNR 752 (875)
Q Consensus 740 ~g~~~~A~~~~~~ 752 (875)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=4.8e-06 Score=88.21 Aligned_cols=167 Identities=11% Similarity=-0.033 Sum_probs=87.5
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
.+.++.|+..+.+... ++...|..+...+.+.|+.++|...+.+.... .| ...+..+...+...|++++|..+|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 3445666666655443 34556777777888888888888887776542 22 245666777888888899999988
Q ss_pred HHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC-
Q 002834 715 RSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEA- 790 (875)
Q Consensus 715 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p- 790 (875)
+++.+ +.|+. ..|+.|+.++...|+..+|...+.+.. .+|-+.++.+|...+.+..+...+ ....+
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~-------~~~~~~ 245 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE-------VKTKWG 245 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC-------CCSSCC
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh-------hccccc
Confidence 88877 56765 488888888888888888888887763 455667788877766543321110 00001
Q ss_pred --CCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 791 --DNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 791 --~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.....++.+..++...+.+++..++.+
T Consensus 246 ~~~~~~~f~~~~~~l~~~~~~~~~~~~~~ 274 (497)
T d1ya0a1 246 VSDFIKAFIKFHGHVYLSKSLEKLSPLRE 274 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCchhhHHHHHH
Confidence 111234555556666667666655433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.75 E-value=1e-05 Score=68.74 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=69.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhc----------CcHHHHHHHHHHhHHHhCCCCCh-hHHHHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHA----------GLVDEGLEIFRSIEKVQGIKPTP-EQYASL 733 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 733 (875)
|-+.+.+++|+..|++..+. .|+ ...+..+..++... +.+++|+..|+++.+ +.|+. ..|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 34555667777777777663 343 33444444455432 334555555555544 34432 355555
Q ss_pred HHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHH
Q 002834 734 VDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 813 (875)
+.+|...|++. ++... ..++++.|.+.++++++++|++..++..|+... +|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 55554433210 11100 123468899999999999999988887776654 455
Q ss_pred HHHHHHHhCC
Q 002834 814 EIRKLMKTRD 823 (875)
Q Consensus 814 ~~~~~~~~~~ 823 (875)
++......+|
T Consensus 134 ~~~~e~~k~~ 143 (145)
T d1zu2a1 134 QLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHh
Confidence 5544444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.70 E-value=0.0069 Score=57.08 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhc----CCChHHHHHHHHhhhcCC
Q 002834 495 IGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN----CGSADEAFMTFSRIYARD 555 (875)
Q Consensus 495 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 555 (875)
.+..|...+.+.+++++|++.|++..+..+..++..|...|.. ..+...|...+......+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 3445556666777888888888877665566666666655543 445555655555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.026 Score=54.18 Aligned_cols=290 Identities=11% Similarity=0.014 Sum_probs=130.8
Q ss_pred CChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHH
Q 002834 351 PDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAF 430 (875)
Q Consensus 351 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 430 (875)
||..-...+..-|.+.|.++.|..++..+. -+..++..+.+.+++..|.+++.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 444444445555556666666666654321 34566666777777777777666442 445666666666
Q ss_pred hccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHH
Q 002834 431 SESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIK 510 (875)
Q Consensus 431 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 510 (875)
.+.....-+ ++.......+......++..+-..|.++....+++...... ..+..+++.++..|++.+. +
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~----~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCH-H
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC----ccchHHHHHHHHHHHHhCh-H
Confidence 665544332 22222333444444555555555555555555555443221 4444555666666665432 2
Q ss_pred HHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC
Q 002834 511 YAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPD 590 (875)
Q Consensus 511 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 590 (875)
+-.+.+.... +......++..|.+.+-+++ ++..|.+.|++++|+.+.-. . .++
T Consensus 150 kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~e------------------lv~Ly~~~~~~~~A~~~~i~---~--~~~ 203 (336)
T d1b89a_ 150 KMREHLELFW---SRVNIPKVLRAAEQAHLWAE------------------LVFLYDKYEEYDNAIITMMN---H--PTD 203 (336)
T ss_dssp HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHH------------------HHHHHHHTTCHHHHHHHHHH---S--TTT
T ss_pred HHHHHHHhcc---ccCCHHHHHHHHHHcCChHH------------------HHHHHHhcCCHHHHHHHHHH---c--chh
Confidence 2222222211 22223334444444444433 34444666666666554321 1 233
Q ss_pred cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcC
Q 002834 591 AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 591 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 670 (875)
.......+..+.+..+.+...++....... .+...+.++......-+..+..+.+ -+.+
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~~i~~lL~~v~~~~d~~r~V~~~------------------~k~~ 262 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDHTRAVNYF------------------SKVK 262 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGGGHHHHHHHHGGGCCHHHHHHHH------------------HHTT
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc---CHHHHHHHHHHhccCCCHHHHHHHH------------------HhcC
Confidence 333333444455555555444444433332 2333344444444444444444333 3344
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
+..-....++...+.| +....+.+...|...++++.-.+
T Consensus 263 ~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 263 QLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp CTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 4444445555544433 23455556666666666554333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00025 Score=58.36 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASL 733 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 733 (875)
+..+...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|++.++++.+...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456667777788888888888877742 334556666777788888888888888777652111111 1245556
Q ss_pred HHHhhcCCChHHHHHHHHhC
Q 002834 734 VDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~ 753 (875)
+..+...+++++|++.+++.
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 66666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=6.2e-05 Score=58.20 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP--------VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
.++..+.+.|++++|+.++++.. ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 45556666666666666665541 1222 46788899999999999999999999999999999888777654
Q ss_pred H
Q 002834 803 Y 803 (875)
Q Consensus 803 ~ 803 (875)
.
T Consensus 90 ~ 90 (95)
T d1tjca_ 90 E 90 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.038 Score=53.00 Aligned_cols=243 Identities=9% Similarity=0.056 Sum_probs=138.7
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACA 364 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~ 364 (875)
|..-.......+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+..+|.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHH
Confidence 44444556666778888999999988764 4777888889999999998887653 25567888888887
Q ss_pred ccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC---CCCcchHHHHHHHHhccCChhHHHH
Q 002834 365 YLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC---RRDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
+......+ .+.......... -...++..|-..|.++....+++... ..+...++.++..|++.+ .++..+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d-~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHAD-ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHH-HHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 76655432 222222222332 44678888899999999999998753 345567888888888865 344444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 442 LLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 442 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
.++.. . +......++..|...+. +..++-.|.+.|.+++|..++=+-.
T Consensus 154 ~l~~~---s---~~y~~~k~~~~c~~~~l-------------------------~~elv~Ly~~~~~~~~A~~~~i~~~- 201 (336)
T d1b89a_ 154 HLELF---W---SRVNIPKVLRAAEQAHL-------------------------WAELVFLYDKYEEYDNAIITMMNHP- 201 (336)
T ss_dssp HHHHH---S---TTSCHHHHHHHHHTTTC-------------------------HHHHHHHHHHTTCHHHHHHHHHHST-
T ss_pred HHHhc---c---ccCCHHHHHHHHHHcCC-------------------------hHHHHHHHHhcCCHHHHHHHHHHcc-
Confidence 44332 1 11223334444433332 2446667778888887776543321
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHH
Q 002834 522 KRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLF 579 (875)
Q Consensus 522 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 579 (875)
++.......+..+.+..+.+...+++....+..+...+.++......-++.++++.+
T Consensus 202 -~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 202 -TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp -TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 244444556666666666666555555444444444555555555555555444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.00012 Score=64.30 Aligned_cols=111 Identities=14% Similarity=-0.036 Sum_probs=80.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI--SDAYSLVNRMPVEADCNVWGTLLGACRIHHE 774 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 774 (875)
........|++++|.+.|.+.... .+.... . .+ ..+.+ .++..+-.. ....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l----~-~~-~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE---WRGPVL----D-DL-RDFQFVEPFATALVED-----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT----G-GG-TTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Cccccc----c-cC-cchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence 334677889999999999998763 232110 0 00 01111 111111111 23567888899999999
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+.|+..++++++.+|.+...|..++.+|...|++++|++.++..+.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887743
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=2e-05 Score=66.90 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=63.2
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
.+.+.+++|++.|+...+ +.|+ ...+..++.+|...+++..+.+ ..+.++.|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 344555566666655554 3343 2355555555544443333222 2345688999
Q ss_pred HHHHHhcccCCCCccHHHHHHHHHhcCC-----------chhHHHHHHHHHh
Q 002834 781 VANRLFEMEADNIGNYVVMSNLYAADAR-----------WDGVVEIRKLMKT 821 (875)
Q Consensus 781 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~ 821 (875)
.++++++++|+++.+|..+|++|...|+ +++|.+.+++..+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 9999999999999999999999988764 5778887777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.50 E-value=0.00013 Score=62.80 Aligned_cols=62 Identities=8% Similarity=-0.149 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-----------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-----------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|+.+..++...|+++.|...+++++++.|+.. ..|..+|.+|...|++++|++.+++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777654321 2577899999999999999998877654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.00014 Score=68.49 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=88.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISD 745 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 745 (875)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.|+.+.+ ..|+.. .+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45788999999999998852 44456777788899999999999999999877 567644 55555666655555555
Q ss_pred HHHHHHhCC--CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 746 AYSLVNRMP--VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 746 A~~~~~~~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+..-..... .+|+. ..+......+...|+.+.|...++++.++.|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443322221 23322 33333445567789999999999999999998877654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.00074 Score=57.84 Aligned_cols=67 Identities=15% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC--------CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP--------VEAD-----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.|..++.+|...|++++|.+.+++.. ..++ ..++..+..++...|+++.|+..+++++++.|+....
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 45555666666666666665555431 1222 1246677888889999999999999999998766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00065 Score=52.13 Aligned_cols=63 Identities=6% Similarity=-0.096 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..+..++..+...|+++.|+..+++++++.|.++ .++..||++|.+.|++++|++.+++..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34456788889999999999999999999987654 3578899999999999999999887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.18 E-value=0.0001 Score=69.41 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=87.4
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~ 777 (875)
..+.|++++|+..+++..+ ..|+ ...+..++.+|+..|++++|.+.++... ..|+. ..+..+...+...+..+.
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 4567999999999999988 5665 5699999999999999999999999885 66754 566666666554444443
Q ss_pred HHHHHHHH-hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 778 GRVVANRL-FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 778 a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+.....+. +..+|++...+...+.++...|++++|.+.++.+.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33222221 2223444556677789999999999999998887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.0028 Score=55.21 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQY 730 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 730 (875)
..+..++..+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+++.+ ..|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 456777888888888888888888888742 44566788888888888888888888888744 25788876543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.65 Score=46.80 Aligned_cols=114 Identities=9% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 428 DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
....+.|+..++..+...+.+. | -..|...-..-.+.++ ....++...+.+..-. +.........+..+.+.+
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~-~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMN-QPAVTVTNFVRANPTL--PPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGG-CCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhcccc-CCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhcc
Confidence 3455667777776666665321 2 2233222221122221 1222333333333210 111222334455666677
Q ss_pred CHHHHHHHHHhhccCC-CcccHHHHHHHhhcCCChHHHHHHHHhh
Q 002834 508 NIKYAFNVFQSLLEKR-NLVTFNPVISGYANCGSADEAFMTFSRI 551 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 551 (875)
+++.....+ ...| +...-.....+....|+.+.|...+..+
T Consensus 87 ~w~~~~~~~---~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 87 DWRGLLAFS---PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp CHHHHHHHC---CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 766544433 2233 2333334555565555555555554444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.026 Score=44.21 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhcCC---ChHHHHHHHHhCC-CCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 728 EQYASLVDLLARGG---QISDAYSLVNRMP-VEA-DC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 728 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
.+--..+.++.+.. +.++++.++++.- ..| +. ..|-.|.-+|.+.|+++.|.+.++++++.+|+|..
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 34444444454433 2344555555442 222 22 34445555555555666666556665555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=1.9 Score=43.12 Aligned_cols=356 Identities=9% Similarity=-0.018 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccC
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGI-RPDSITILTIIHFCTTVL 469 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~ 469 (875)
+....+..+.+.++++.....+..- ..+...-.....+....|+..+|...+...-..|. .|+
T Consensus 74 lr~~~l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--------------- 137 (450)
T d1qsaa1 74 LQSRFVNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--------------- 137 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT---------------
T ss_pred HHHHHHHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch---------------
Confidence 3344455666777777666555321 12444455677788888999999888887766542 222
Q ss_pred chhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 002834 470 REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFS 549 (875)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 549 (875)
....++..+.+.| ..+....-.-+......|+...|..+...+... ........+...... ..+.....
T Consensus 138 ---~c~~l~~~~~~~~----~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~a~~~l~~~p---~~~~~~~~ 206 (450)
T d1qsaa1 138 ---ACDKLFSVWRASG----KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD-YQTIASAIISLANNP---NTVLTFAR 206 (450)
T ss_dssp ---HHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG-GHHHHHHHHHHHHCG---GGHHHHHH
T ss_pred ---HHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh-HHHHHHHHHHHHhCh---HhHHHHHh
Confidence 2233444444444 344555555666777778888888888766543 323333333333221 22222111
Q ss_pred hhhcCCCccHHHHHHHHH--HcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchH
Q 002834 550 RIYARDLTPWNLMIRVYA--ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 550 ~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
. ...+......+..++. ...+.+.|..++......... +...... +.
T Consensus 207 ~-~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~----------------~~------------- 255 (450)
T d1qsaa1 207 T-TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQE----------------LR------------- 255 (450)
T ss_dssp H-SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHH----------------HH-------------
T ss_pred c-CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHH----------------HH-------------
Confidence 1 1111111112222222 234566677766665543211 1111100 00
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG 705 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 705 (875)
..+...+...+..+.|...+..... .+.....-.+......+++..+...++.|... ..-...-..-+..++...|
T Consensus 256 -~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G 333 (450)
T d1qsaa1 256 -DIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERG 333 (450)
T ss_dssp -HHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcC
Confidence 1111111222333333333322111 12222222333344566777777777765321 1111222334556777778
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHH-hhcCCChHHHHHHHHhCCCCCCHH-H---HHHHHHHHHhcCChhHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDL-LARGGQISDAYSLVNRMPVEADCN-V---WGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~p~~~-~---~~~l~~~~~~~~~~~~a~~ 780 (875)
+.++|..+|..+.. .++ -|..|... +...-.+. ....+..+... . -..-+..+...|....|..
T Consensus 334 ~~~~A~~~~~~~a~----~~~--fYG~LAa~~Lg~~~~~~-----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~ 402 (450)
T d1qsaa1 334 REAEAKEILHQLMQ----QRG--FYPMVAAQRIGEEYELK-----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARS 402 (450)
T ss_dssp CHHHHHHHHHHHHT----SCS--HHHHHHHHHTTCCCCCC-----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHH
T ss_pred ChhhHHHHHHHHhc----CCC--hHHHHHHHHcCCCCCCC-----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHH
Confidence 88888887777643 222 34443321 11110000 00001111110 0 0112344556788888888
Q ss_pred HHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 781 VANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 781 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
.+..+++.- ++.-...++.+..+.|.++.|+..-.+.
T Consensus 403 e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 403 EWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 877776532 4556667788888888888888765543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.05 E-value=0.095 Score=42.45 Aligned_cols=50 Identities=4% Similarity=-0.051 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 824 (875)
.|.++|.+.++++.+. .++.....|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4566777777776654 345556667777665 3467777777776665553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.33 E-value=0.79 Score=35.07 Aligned_cols=141 Identities=7% Similarity=0.030 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+-+.+.|-. ....++.++.+.+...|
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNTLNE 87 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTCCCH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcchHH
Confidence 45678888999999888763 344445556655555566677777777765544443321 23445566665554322
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
....-+....++|.-+.-.++++.+++.+.-+|.....++++|.+.|...++.++++..=++|++
T Consensus 88 ---------------~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 ---------------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33344556667888888889999988887778889999999999999999999998888777765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.62 E-value=0.36 Score=38.74 Aligned_cols=112 Identities=8% Similarity=-0.059 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDA 746 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 746 (875)
+.++|+++|++..+.|. | .....+. .....+.++|.+++++..+ .| +......|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 57788888888888762 2 2222222 3445688899999988866 33 33445556665543 4578899
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCC
Q 002834 747 YSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 747 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 791 (875)
.+++++....-++.....|...|.. .+|.++|.+.++++.++...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999887544455555666655554 45889999999998877543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.21 Score=38.93 Aligned_cols=63 Identities=3% Similarity=-0.101 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcccCCCC-ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 758 DCNVWGTLLGACRIH---HEVELGRVVANRLFEMEADNI-GNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...+...+.++..+. .+.++|+.+++.+++.+|.+. ..+..||..|++.|++++|.+.++++.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444555554433 234556666666665555443 345556666666666666666554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.62 E-value=3.4 Score=31.55 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=58.1
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHh
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 717 (875)
|+++......+-.+.. +..-.+..+..+.+.|+-++-.++++.+.+. -+|++.....+..||.+.|...++.+++.++
T Consensus 69 C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 69 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444444433332 2333555667778888888888888887764 4788888888888999999999999999888
Q ss_pred HHHhCCC
Q 002834 718 EKVQGIK 724 (875)
Q Consensus 718 ~~~~~~~ 724 (875)
.+ .|++
T Consensus 147 Ce-~G~K 152 (161)
T d1wy6a1 147 CK-KGEK 152 (161)
T ss_dssp HH-TTCH
T ss_pred HH-HhHH
Confidence 77 4543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.85 E-value=4.1 Score=29.44 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+..+.. ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 34456666777777788999999999999999999999999999888764 3344556665543
|