Citrus Sinensis ID: 002842
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 874 | 2.2.26 [Sep-21-2011] | |||||||
| Q01405 | 765 | Protein transport protein | yes | no | 0.740 | 0.845 | 0.242 | 1e-40 | |
| Q05AS9 | 765 | Protein transport protein | no | no | 0.715 | 0.816 | 0.240 | 2e-40 | |
| Q15437 | 767 | Protein transport protein | yes | no | 0.737 | 0.840 | 0.237 | 2e-40 | |
| A2VDL8 | 768 | Protein transport protein | yes | no | 0.742 | 0.845 | 0.239 | 2e-40 | |
| Q7SZE5 | 765 | Protein transport protein | no | no | 0.712 | 0.814 | 0.249 | 4e-40 | |
| Q15436 | 765 | Protein transport protein | no | no | 0.740 | 0.845 | 0.242 | 5e-40 | |
| Q6BQT6 | 746 | Protein transport protein | yes | no | 0.725 | 0.849 | 0.245 | 6e-40 | |
| A5DA00 | 748 | Protein transport protein | N/A | no | 0.732 | 0.855 | 0.250 | 2e-39 | |
| Q9D662 | 767 | Protein transport protein | no | no | 0.737 | 0.840 | 0.234 | 2e-39 | |
| Q5R5G2 | 766 | Protein transport protein | no | no | 0.736 | 0.840 | 0.234 | 3e-39 |
| >sp|Q01405|SC23A_MOUSE Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 180/741 (24%), Positives = 304/741 (41%), Gaps = 94/741 (12%)
Query: 149 ESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCH--NCGAFAN 206
E V FS + + +A + AL +P KE P L IQ +P C C A N
Sbjct: 13 ERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKE-RPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 207 IYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVP 266
C++ + W C C N Y S+ N P P ++ YV
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPTYAGISE---LNQPAELLPQFSSIE-------YVV 121
Query: 267 VSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSED 326
+ +M + V+D C+++ LQ L+ S+ + +PPTA +G+I +GR V V++ +
Sbjct: 122 LRGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 181
Query: 327 SIASSDVLAGDKLPTEDSLKALLYGTGVYLSPMHASKQV-----AHDIFSSLRPYKLNIT 381
I+ S V G K + L+ +L + V ++ QV ++ ++ +N+T
Sbjct: 182 GISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 241
Query: 382 ----EASRD-----------RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426
E RD R G A+ +A+ +++ P +RI++ G
Sbjct: 242 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLE----------CTFPNTGARIMMFIG 291
Query: 427 GPNTYGPGSV-----------PHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCA 475
GP T GPG V H N +++K K E L +A VIDI
Sbjct: 292 GPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKK-GTKHFEALANRAATTGHVIDIYAC 350
Query: 476 GNCPVRVPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTR------AAGSHGFLEIRC 528
+ ++ +GG +V+ D F + F QR T+ G G LEI+
Sbjct: 351 ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKT 410
Query: 529 SDDILVTQIVGP----GEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSME--NKRDI- 581
S +I ++ +GP + + ++ + T + A+ E N+ +
Sbjct: 411 SREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 470
Query: 582 --ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS---VSAYLSSFQDEVAAVLIAKRT 636
+ QF +Y + RV T+ D+ + +SF E AA+L+A+
Sbjct: 471 IPQGGRGAVQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLA 530
Query: 637 LLRAKIFSEAIDMRTMIDERVKDIALKFG---SQVPKSKLYRFPKELSALSELLFHLRRS 693
+ RA+ E D+ +D ++ + KFG P S +RF + S + +FHLRRS
Sbjct: 531 IYRAET-EEGPDVLRWLDRQLIRLCQKFGEYHKDDPNS--FRFSETFSLYPQFMFHLRRS 587
Query: 694 PLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKA 753
P L DE S R+ F+ SL M+ P Y G E + ++ +D+
Sbjct: 588 PFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRI 647
Query: 754 VVLDHGTDVFIWLGAELAADEGRSAA------------ALAACRTLAEELSEFRFPAPRI 801
+++D + I+ G +A + R + L A A+E+ RFP PR
Sbjct: 648 LLMDTFFQILIYHGETIA--QWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRY 705
Query: 802 LAFKEGSSQARYFVTRLIPAH 822
+ + G SQAR+ ++++ P+
Sbjct: 706 IDTEHGGSQARFLLSKVNPSQ 726
|
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. Mus musculus (taxid: 10090) |
| >sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q15437|SC23B_HUMAN Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2 | Back alignment and function description |
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| >sp|A2VDL8|SC23A_BOVIN Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7SZE5|SC23A_DANRE Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q15436|SC23A_HUMAN Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6BQT6|SEC23_DEBHA Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|A5DA00|SEC23_PICGU Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q9D662|SC23B_MOUSE Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q5R5G2|SC23B_PONAB Protein transport protein Sec23B OS=Pongo abelii GN=SEC23B PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 874 | ||||||
| 224064766 | 871 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.834 | 0.0 | |
| 225437779 | 874 | PREDICTED: protein transport protein SEC | 1.0 | 1.0 | 0.814 | 0.0 | |
| 356572844 | 871 | PREDICTED: protein transport protein Sec | 0.993 | 0.996 | 0.802 | 0.0 | |
| 449435492 | 869 | PREDICTED: protein transport protein SEC | 0.994 | 1.0 | 0.779 | 0.0 | |
| 356503976 | 871 | PREDICTED: protein transport protein Sec | 0.993 | 0.996 | 0.794 | 0.0 | |
| 449518310 | 869 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.994 | 1.0 | 0.778 | 0.0 | |
| 224130838 | 830 | predicted protein [Populus trichocarpa] | 0.949 | 1.0 | 0.802 | 0.0 | |
| 297809983 | 882 | hypothetical protein ARALYDRAFT_490398 [ | 0.998 | 0.989 | 0.762 | 0.0 | |
| 255548249 | 834 | protein transport protein sec23, putativ | 0.941 | 0.986 | 0.824 | 0.0 | |
| 18411740 | 880 | sec23/sec24-like transport protein [Arab | 0.998 | 0.992 | 0.763 | 0.0 |
| >gi|224064766|ref|XP_002301552.1| predicted protein [Populus trichocarpa] gi|222843278|gb|EEE80825.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1518 bits (3930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/871 (83%), Positives = 793/871 (91%)
Query: 1 MANPPQTSLGYSVTIGPSNPDISSPQPEKSLIPPPPMSSTPPRFPPPKLQQDHMTSPSIK 60
MANPPQ SLGYSVT PSNPD S+PQPEK+ +PPP M RFPPPKL QD + SPS +
Sbjct: 1 MANPPQPSLGYSVTAVPSNPDSSTPQPEKNYVPPPTMLPGASRFPPPKLHQDQIPSPSFQ 60
Query: 61 TPNLLSPANGVKTGSPIPHLSTPPGPPVFTSPVRPAAVPFRTSPATPQPVALSSGSSFPT 120
P LLSPANGVKTGSP+PHLSTPPGPPVFTSPVRPAAVPFRTSPATPQPVA SSGS+ PT
Sbjct: 61 NPRLLSPANGVKTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPATPQPVAFSSGSTLPT 120
Query: 121 SSPPHFSNGSAELQHQVPHAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSP 180
SSPPHFSNGS ELQHQVP A ++ P ESSC LFSA KVLK+KK ANVPSLGFGAL SP
Sbjct: 121 SSPPHFSNGSIELQHQVPLATNDSTPFEESSCALFSARKVLKQKKLANVPSLGFGALFSP 180
Query: 181 GKEVSPSLQIIQRDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEE 240
G E+SP QIIQRDPHRCHNCGA+AN+YCKILLGSGQWQCVIC+ LNGSEGEYVAPSKEE
Sbjct: 181 GGEISPGPQIIQRDPHRCHNCGAYANLYCKILLGSGQWQCVICQKLNGSEGEYVAPSKEE 240
Query: 241 LRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFV 300
LRN PELSSP++DY+Q GN R ++PVSDSRMSAP +LVIDECLDE HLQHLQSSLHAFV
Sbjct: 241 LRNLPELSSPIIDYIQIGNKRPGFIPVSDSRMSAPTVLVIDECLDETHLQHLQSSLHAFV 300
Query: 301 ESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYGTGVYLSPMH 360
+S+PPTARIGIILYGRTVSVYDFSE+ +AS+DVL GDK PT +SLKAL+YGTGVYLSPMH
Sbjct: 301 DSLPPTARIGIILYGRTVSVYDFSEELMASADVLPGDKSPTRESLKALIYGTGVYLSPMH 360
Query: 361 ASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR 420
ASK+VAH IFSSLRP+ LNI E+SRDRCLGTAVEVALAIIQGPSAEMSRG++KR GGNSR
Sbjct: 361 ASKEVAHKIFSSLRPFGLNIAESSRDRCLGTAVEVALAIIQGPSAEMSRGIIKRAGGNSR 420
Query: 421 IIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPV 480
II CAGGPNTYGPGSVPHSFSHPNY HMEK ALKWME LGR+AH+HN V+DILCAG CPV
Sbjct: 421 IIACAGGPNTYGPGSVPHSFSHPNYPHMEKTALKWMENLGREAHRHNTVVDILCAGTCPV 480
Query: 481 RVPVLQPLAKASGGVLVLHDDFGEAFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGP 540
R+PVLQPLAKASGGVLVLHDDFGEAFGVNLQRA++RA+ HG LEIRCSDDIL+TQ+VGP
Sbjct: 481 RIPVLQPLAKASGGVLVLHDDFGEAFGVNLQRAASRASRFHGLLEIRCSDDILITQVVGP 540
Query: 541 GEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIESNHVFFQFAIRYSNVYQA 600
GEEAH+DTHETFKN+ AL IQM SVEETQSFA+SME K DI+S+ VFFQFA+RY+NVYQA
Sbjct: 541 GEEAHVDTHETFKNNNALCIQMLSVEETQSFALSMETKEDIKSDCVFFQFAVRYANVYQA 600
Query: 601 DISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDI 660
DISRVVTVRLPTVDSVSAYL S QDEVAA+L+AKRTLLRAK S+ +DMR IDER+KDI
Sbjct: 601 DISRVVTVRLPTVDSVSAYLESVQDEVAAILMAKRTLLRAKNHSDVMDMRGTIDERIKDI 660
Query: 661 ALKFGSQVPKSKLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDL 720
ALKFGS VPKSKL++FPKELSALSELLFHLRR PLLG+I+GH+DERSVLRNLFLNAS DL
Sbjct: 661 ALKFGSLVPKSKLHQFPKELSALSELLFHLRRGPLLGSIVGHEDERSVLRNLFLNASSDL 720
Query: 721 SLRMVAPRCLMYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAA 780
SLRMVAPRCLM+REGGTFEELPAYDLAMQSD AVVLDHGTDVFIWLGAELAADEGRSAAA
Sbjct: 721 SLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELAADEGRSAAA 780
Query: 781 LAACRTLAEELSEFRFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLT 840
LAACRTLAEE++E RFPAPRILAFKEGSSQARYFV+RLIPAHKDPPYEQEARFPQLRSLT
Sbjct: 781 LAACRTLAEEITELRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLT 840
Query: 841 PEERIKLKSSFLFFDDPSFCEWMRSLKVVPP 871
E+R+KLK+SF+ FDDPSFCEWMRSLKVVPP
Sbjct: 841 IEQRMKLKTSFIHFDDPSFCEWMRSLKVVPP 871
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437779|ref|XP_002281404.1| PREDICTED: protein transport protein SEC23 [Vitis vinifera] gi|297744089|emb|CBI37059.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356572844|ref|XP_003554575.1| PREDICTED: protein transport protein Sec23A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435492|ref|XP_004135529.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356503976|ref|XP_003520775.1| PREDICTED: protein transport protein Sec23A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449518310|ref|XP_004166185.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224130838|ref|XP_002320937.1| predicted protein [Populus trichocarpa] gi|222861710|gb|EEE99252.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297809983|ref|XP_002872875.1| hypothetical protein ARALYDRAFT_490398 [Arabidopsis lyrata subsp. lyrata] gi|297318712|gb|EFH49134.1| hypothetical protein ARALYDRAFT_490398 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|255548249|ref|XP_002515181.1| protein transport protein sec23, putative [Ricinus communis] gi|223545661|gb|EEF47165.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|18411740|ref|NP_567217.1| sec23/sec24-like transport protein [Arabidopsis thaliana] gi|27754215|gb|AAO22561.1| putative protein transport factor [Arabidopsis thaliana] gi|332656680|gb|AEE82080.1| sec23/sec24-like transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 874 | ||||||
| TAIR|locus:2141340 | 880 | AT4G01810 [Arabidopsis thalian | 0.998 | 0.992 | 0.728 | 0.0 | |
| CGD|CAL0002954 | 762 | SEC23 [Candida albicans (taxid | 0.433 | 0.497 | 0.239 | 4.1e-31 | |
| DICTYBASE|DDB_G0292396 | 1121 | DDB_G0292396 [Dictyostelium di | 0.348 | 0.272 | 0.241 | 7.4e-31 | |
| FB|FBgn0262125 | 773 | Sec23 "Sec23 ortholog (S. cere | 0.356 | 0.403 | 0.227 | 2.2e-28 | |
| UNIPROTKB|E1C3Y5 | 765 | SEC23A "Protein transport prot | 0.282 | 0.322 | 0.286 | 6.1e-28 | |
| UNIPROTKB|J9P1Q5 | 765 | SEC23A "Uncharacterized protei | 0.284 | 0.325 | 0.284 | 1e-27 | |
| UNIPROTKB|F1SHL3 | 765 | SEC23A "Uncharacterized protei | 0.284 | 0.325 | 0.284 | 1e-27 | |
| UNIPROTKB|F1MVW5 | 767 | SEC23A "Protein transport prot | 0.284 | 0.324 | 0.284 | 1.1e-27 | |
| UNIPROTKB|F6V2R0 | 767 | SEC23A "Uncharacterized protei | 0.284 | 0.324 | 0.284 | 1.1e-27 | |
| UNIPROTKB|A2VDL8 | 768 | SEC23A "Protein transport prot | 0.284 | 0.324 | 0.284 | 1.1e-27 |
| TAIR|locus:2141340 AT4G01810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3364 (1189.2 bits), Expect = 0., P = 0.
Identities = 640/879 (72%), Positives = 740/879 (84%)
Query: 1 MANPPQTSLGYSVTIGPSNPDISSPQPEKSLIXXXXXXXXXXXXXXX---KLQQDHMTSP 57
MAN P++S+ Y T+ P P+ SPQP+++ + + D M+SP
Sbjct: 1 MANLPKSSVNYPGTLTPLEPNRPSPQPDRTPVPHSPPVVASPIPPRFPQPSFRPDQMSSP 60
Query: 58 SIKTPNLLSPANGVKTGSPIPHLSTPPGPPVFTSPVRPAAVPFRTSPATPQPVALXXXXX 117
S+K+P+LLSPANG++TGSPIP LSTPPGPPVF +PV+PAAVPFRTSPATPQP+A
Sbjct: 61 SMKSPSLLSPANGIRTGSPIPRLSTPPGPPVFNTPVKPAAVPFRTSPATPQPMAYSSANS 120
Query: 118 XXXXXX-XXXXNGSAE-LQHQVPHAAEETMPVG-ESSCVLFSAHKVLKKKKQANVPSLGF 174
NGS+ Q +P P+ +S VLFSA+KVLK+KK ANV SLGF
Sbjct: 121 SLPVSTPSFYSNGSSVGSQRDLPDVVRMEEPIAADSPYVLFSANKVLKQKKLANVASLGF 180
Query: 175 GALVSPGKEVSPSLQIIQRDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYV 234
GA+VS G+E+SP QIIQRDPHRC NCGA++N Y IL+GSGQWQCVIC N+NGS+GEYV
Sbjct: 181 GAIVSAGREISPGPQIIQRDPHRCLNCGAYSNPYSSILIGSGQWQCVICENMNGSKGEYV 240
Query: 235 APSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQS 294
A SK EL+NFPELS P+VDYVQTGN R +VP SDSR SAP++LVIDECLDEPHLQHLQS
Sbjct: 241 ASSKNELQNFPELSLPLVDYVQTGNKRPGFVPASDSRTSAPVVLVIDECLDEPHLQHLQS 300
Query: 295 SLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYGTGV 354
SLHAFV+S+P T R+GIILYGRTVS+YDFSEDS+AS+DV++G K P+ +S+KAL+YGTGV
Sbjct: 301 SLHAFVDSLPQTTRLGIILYGRTVSIYDFSEDSVASADVISGAKSPSAESMKALIYGTGV 360
Query: 355 YLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKR 414
YLSPMHAS +VAH+IFSSLRPY LN+ EASRDRCLGTAVE ALAIIQGPSAEMSRGVV+R
Sbjct: 361 YLSPMHASLKVAHEIFSSLRPYTLNVPEASRDRCLGTAVEAALAIIQGPSAEMSRGVVRR 420
Query: 415 PGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILC 474
GGNSRIIVCAGGP TYGPGSVPHS SHPNY +MEK A+KWME LGR+AH+HN V+DILC
Sbjct: 421 AGGNSRIIVCAGGPITYGPGSVPHSMSHPNYPYMEKTAIKWMENLGREAHRHNTVVDILC 480
Query: 475 AGNCPVRVPVLQPLAKASGGVLVLHDDFGEAFGVNLQRASTRAAGSHGFLEIRCSDDILV 534
AG CP+RVP+LQPLAKASGGVLVLHDDFGEAFGV+LQRA+TRAAGSHG LE+RCSDDIL+
Sbjct: 481 AGTCPLRVPILQPLAKASGGVLVLHDDFGEAFGVDLQRAATRAAGSHGLLEVRCSDDILI 540
Query: 535 TQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIESNHVFFQFAIRY 594
TQ++GPGEEAH +THETFK+DAALSIQM SVEETQSF++SMENKRDI+S+HVFFQFA Y
Sbjct: 541 TQVIGPGEEAHSETHETFKSDAALSIQMLSVEETQSFSLSMENKRDIKSDHVFFQFAFHY 600
Query: 595 SNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMID 654
S+VYQAD+SRV+T +LPTVDS+SAYL S +DE +AVLI+KRTLL AK +A+DMR +D
Sbjct: 601 SDVYQADVSRVITFKLPTVDSISAYLQSVEDEASAVLISKRTLLLAKNQKDAVDMRATVD 660
Query: 655 ERVKDIALKFGSQVPKSKLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFL 714
ER+KDIALKFGSQVPKSKLY FPKELS+L ELLFHLRR PLLGNIIGH+DERSVLRNLFL
Sbjct: 661 ERIKDIALKFGSQVPKSKLYSFPKELSSLPELLFHLRRGPLLGNIIGHEDERSVLRNLFL 720
Query: 715 NASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADE 774
NASFDLSLRMVAPRCLM++EGGTFEELPAYDL+MQSDKAV+LDHGTDVFIWLGAEL+ADE
Sbjct: 721 NASFDLSLRMVAPRCLMHQEGGTFEELPAYDLSMQSDKAVILDHGTDVFIWLGAELSADE 780
Query: 775 GRSXXXXXXXXXXXXXXSEFRFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFP 834
+S +EFRFPAPRILAFKEGSSQARYFV RLIPAHKDPPYEQEARFP
Sbjct: 781 VKSAAVLAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVCRLIPAHKDPPYEQEARFP 840
Query: 835 QLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVVPPEP 873
Q+R+LT E+R+KLKSSF+ FD+ SFCEWMRSLKVVPPEP
Sbjct: 841 QIRTLTTEQRMKLKSSFIEFDEASFCEWMRSLKVVPPEP 879
|
|
| CGD|CAL0002954 SEC23 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0292396 DDB_G0292396 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C3Y5 SEC23A "Protein transport protein Sec23A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P1Q5 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SHL3 SEC23A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MVW5 SEC23A "Protein transport protein Sec23A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6V2R0 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A2VDL8 SEC23A "Protein transport protein Sec23A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00021931 | hypothetical protein (871 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 874 | |||
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 1e-58 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 6e-51 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 1e-39 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 3e-20 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 3e-15 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 7e-15 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 2e-14 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 1e-12 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 2e-10 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 4e-10 | |
| COG3266 | 292 | COG3266, DamX, Uncharacterized protein conserved i | 4e-05 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 6e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 |
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-58
Identities = 75/257 (29%), Positives = 113/257 (43%), Gaps = 32/257 (12%)
Query: 269 DSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIP--PTARIGIILYGRTVSVYDFSED 326
+ +I V E + E LQ L+ SL A ++ +P P AR+G+I Y TV Y+ S D
Sbjct: 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSD 61
Query: 327 SIASSDVLAGDKLPTEDSLKAL-LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASR 385
LA K+ LK + L +L P+ K+V HD+ L P +
Sbjct: 62 -------LAQPKMYVVSDLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRP 114
Query: 386 DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFSHPNY 445
+RCLG A++ A +++G A RIIV GG T GPG +
Sbjct: 115 ERCLGPALQAAFLLLKGTFA------------GGRIIVFQGGLPTVGPGKLKSREDKEPI 162
Query: 446 -----LHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHD 500
+ K A K+ + L ++ + +D+ V V L+ LAK++GG + L+D
Sbjct: 163 RSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYD 222
Query: 501 DF-----GEAFGVNLQR 512
F G F +LQR
Sbjct: 223 SFQAPNDGSKFKQDLQR 239
|
COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 874 | |||
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.8 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.78 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.57 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.59 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.56 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.56 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.52 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.47 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.4 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.39 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.34 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.28 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.25 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 98.23 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.21 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.19 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.19 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.19 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.17 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.16 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.13 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.12 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 98.1 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.08 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.89 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.85 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.78 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.72 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.68 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.68 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.65 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.53 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.43 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.41 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.37 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.35 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.35 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.34 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.23 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.23 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 97.11 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 96.96 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 96.71 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 96.68 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.62 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 96.57 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 96.02 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 95.89 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 95.03 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 94.85 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 94.4 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 93.97 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 93.91 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 93.75 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 92.01 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 91.72 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 91.39 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 89.41 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 88.8 | |
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 87.25 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 86.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 85.84 | |
| PF10058 | 54 | DUF2296: Predicted integral membrane metal-binding | 80.26 |
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-161 Score=1350.49 Aligned_cols=688 Identities=29% Similarity=0.446 Sum_probs=633.5
Q ss_pred CCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCCCccccCCCccCCCCCcccccceEEEcCCceEEEccCCC
Q 002842 146 PVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHNCGAFANIYCKILLGSGQWQCVICRN 225 (874)
Q Consensus 146 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~~p~v~~~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~ 225 (874)
.+|+.++||+|||+||+++.++.++++|++|+|+||++... +|+++|+|+||++|+||+||||++|++++.|.|+||.+
T Consensus 5 ~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~-~~~~~y~P~~C~~C~AvlNPyc~vd~~a~~W~CpfC~q 83 (745)
T KOG1986|consen 5 DIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPD-LPPIQYDPLRCSKCGAVLNPYCSVDFRAKSWICPFCNQ 83 (745)
T ss_pred ccccCCCcccccccCCCcccccccccccHHHhccccccCCC-CCccCCCCchhccchhhcCcceeecccCceEecccccc
Confidence 57899999999999999999999999999999999998654 78899999999999999999999999999999999999
Q ss_pred ccCCCccccCCCccccCCCCCC--CCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhhcC
Q 002842 226 LNGSEGEYVAPSKEELRNFPEL--SSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESI 303 (874)
Q Consensus 226 ~N~~p~~Y~~~~~~d~~~~PEL--~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~~~l~~l~~sL~~~L~~L 303 (874)
+|.+|++|..++..+++ +|| +++||||++++.. ..+|+++||||+|+++++|+.||++|+++|+.|
T Consensus 84 rN~~p~~Y~~is~~n~P--~el~Pq~stvEy~l~~~~----------~~ppvf~fVvDtc~~eeeL~~LkssL~~~l~lL 151 (745)
T KOG1986|consen 84 RNPFPPHYSGISENNLP--PELLPQYSTVEYTLSPGR----------VSPPVFVFVVDTCMDEEELQALKSSLKQSLSLL 151 (745)
T ss_pred CCCCChhhcccCccCCC--hhhcCCcceeEEecCCCC----------CCCceEEEEEeeccChHHHHHHHHHHHHHHhhC
Confidence 99999999988766443 688 7999999998531 245667999999999999999999999999999
Q ss_pred CCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHhhcCC-------------ccccchhhhHHHHHHHH
Q 002842 304 PPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYGTG-------------VYLSPMHASKQVAHDIF 370 (874)
Q Consensus 304 p~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~~~~-------------~fL~pl~e~~~~i~~lL 370 (874)
|++++|||||||++||||+|+.+.+.+++||+|+|+++.++++++++..+ +||.|+++|++.++++|
T Consensus 152 P~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~ll 231 (745)
T KOG1986|consen 152 PENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLL 231 (745)
T ss_pred CCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997654 99999999999999999
Q ss_pred HhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcccCC----------
Q 002842 371 SSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHS---------- 439 (874)
Q Consensus 371 e~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~---------- 439 (874)
++|+++.|++++++|+ ||||+||++|+.||++|++ +.|+||++|++||||.|||+|+.+
T Consensus 232 e~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p----------~~g~rIv~f~gGPcT~GpG~vv~~el~~piRshh 301 (745)
T KOG1986|consen 232 EELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFP----------NTGARIVLFAGGPCTRGPGTVVSRELKEPIRSHH 301 (745)
T ss_pred HHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCC----------CCcceEEEeccCCCCcCCceecchhhcCCCcCcc
Confidence 9999999999999999 9999999999999999986 479999999999999999999953
Q ss_pred -CCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChh-hHHHHHHHHHHhhc
Q 002842 440 -FSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFG-EAFGVNLQRASTRA 517 (874)
Q Consensus 440 -~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~-~~f~~dl~r~~~~~ 517 (874)
+++++++|+ |+|.|||++||++++.+||+||||++++||+|++||++|++.|||.+++.|+|+ +.|+++++|+|+|+
T Consensus 302 di~~d~a~y~-kKa~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~~~TGG~lvl~dsF~~s~Fk~sfqR~f~~d 380 (745)
T KOG1986|consen 302 DIEKDNAPYY-KKAIKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLVESTGGVLVLGDSFNTSIFKQSFQRIFTRD 380 (745)
T ss_pred cccCcchHHH-HHHHHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHhhcCCcEEEEecccchHHHHHHHHHHhccc
Confidence 456677888 788999999999999999999999999999999999999999999999999998 47999999999954
Q ss_pred ------cCcceEEEEEeCCCeeEEEeecCCcccccccccc----cccCccccccccCCCCceEEEEEEEeccCCC---CC
Q 002842 518 ------AGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHET----FKNDAALSIQMPSVEETQSFAVSMENKRDIE---SN 584 (874)
Q Consensus 518 ------~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~s~~~~~~~~~~~~---~~ 584 (874)
+||||+|+|+||++++|+|+||||.++++|+++. .+..++..|+++.+++.+++++.|++...-. +.
T Consensus 381 ~~~~l~~~fn~~leV~tSkdlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~~~~ 460 (745)
T KOG1986|consen 381 GEGDLKMGFNGTLEVKTSKDLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIPQSG 460 (745)
T ss_pred cccchhhhcCceEEEEecCCcEEEecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCCCCC
Confidence 8999999999999999999999999999977552 2222345788999999999999999986543 57
Q ss_pred ceEEEEEEEEEecCCCEEEEEEeeeeccccch-HHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 002842 585 HVFFQFAIRYSNVYQADISRVVTVRLPTVDSV-SAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALK 663 (874)
Q Consensus 585 ~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~-~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~~Ld~~li~ll~~ 663 (874)
.+||||+++|+|++|++|+||+|++++|++.. .+|..+|||||+|++|||++++|++++ +..|+++|+|+.|||+|++
T Consensus 461 ~~~iQFiT~Yq~s~g~~riRVtT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e-~~~d~~rwlDr~Lirlc~k 539 (745)
T KOG1986|consen 461 QGYIQFITQYQHSSGQKRIRVTTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETE-DGPDVLRWLDRNLIRLCQK 539 (745)
T ss_pred eeEEEEEEEEEcCCCcEEEEEEEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhcc-ccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876 589999999999999999999999995 8899999999999999999
Q ss_pred hcccCCCCCc-cccchhhhHHHHHHHHhccCcCCCCCCCCchHHHHHHHHHhccCHHHHHHhhccceeeeccCCCcccCC
Q 002842 664 FGSQVPKSKL-YRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELP 742 (874)
Q Consensus 664 y~~~~~~~~~-l~Lp~~l~llP~~~~~L~Rs~~l~~~~~spDera~~~~~l~~~~v~~sl~miyP~L~~~~~~~~~~~lP 742 (874)
|++|.+++++ |+|+++|++|||||||||||+||+++|+|||||+||||+|++++++++++||+|+|++|++++++++++
T Consensus 540 Fg~y~k~dPssf~l~~~fsl~PQfmfhLRRS~fLqvfNnSPDEt~~yrhll~~e~v~~sliMIqP~L~sySf~g~~epvl 619 (745)
T KOG1986|consen 540 FGDYRKDDPSSFRLSPNFSLYPQFMFHLRRSPFLQVFNNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYSFNGPPEPVL 619 (745)
T ss_pred HhccCCCCchhhcCChhhhhhHHHHHhhccchhhhccCCCcchHHHHHHHHhhccchhhhheecceeeeeecCCCCceeE
Confidence 9999777755 999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred cccccccCCcEEEEeCCcEEEEEeCCcccccc--------cc--cHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCchHH
Q 002842 743 AYDLAMQSDKAVVLDHGTDVFIWLGAELAADE--------GR--SAAALAACRTLAEELSEFRFPAPRILAFKEGSSQAR 812 (874)
Q Consensus 743 ~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~--------~~--~~~~l~~~~~~~~~l~~~R~p~Pr~i~~~qg~sqaR 812 (874)
++..||.+|.|+|||++|+|+||+|++|++|. || |++++++|+++|++|+.+|||+|||++|+|||||||
T Consensus 620 LD~~Si~~D~iLLlDt~f~i~i~hG~tIaqWR~~gy~~~pe~~~f~~LL~ap~~dA~el~~~RFP~PR~v~~~q~GSQAR 699 (745)
T KOG1986|consen 620 LDVASILADRILLLDTYFTIVIFHGSTIAQWRKAGYHEQPEYENFKELLEAPREDAQELLLERFPMPRYVVTDQGGSQAR 699 (745)
T ss_pred ecccccCCceEEEeecceEEEEECCchHHHHHhcccccChhhHHHHHHHHhHHHHHHHHHHhhCCCCeEEEecCCccHHH
Confidence 78899999999999999999999999998653 43 789999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCCchHHHHHHhcccCCCCCC
Q 002842 813 YFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVVPPEPS 874 (874)
Q Consensus 813 fl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~~~~~~ 874 (874)
||++|||||.+|+.... +. +++.|+|||+|||+||+|||++++.++
T Consensus 700 FLlsklnPS~t~~~~~~---~~-------------~s~~I~TDDvSlq~fm~hLkklav~~~ 745 (745)
T KOG1986|consen 700 FLLSKLNPSETHNNLTA---HG-------------GSSIILTDDVSLQVFMEHLKKLAVSSS 745 (745)
T ss_pred hhhhhcCcchhccchhh---cc-------------CCCeeeeccccHHHHHHHHHhhcCCCC
Confidence 99999999988743211 11 266799999999999999999998764
|
|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 874 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-39 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 5e-39 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 8e-39 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-32 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 3e-32 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 2e-05 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-05 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 348 bits (892), Expect = e-107
Identities = 181/779 (23%), Positives = 297/779 (38%), Gaps = 102/779 (13%)
Query: 153 VLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRC--HNCGAFANIYCK 210
V FS + + +A + AL +P KE P L IQ +P C C A N C+
Sbjct: 21 VRFSWNVWPSSRLEATRMVVPVAALFTPLKER-PDLPPIQYEPVLCSRTTCRAVLNPLCQ 79
Query: 211 ILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDS 270
+ + W C C N Y S+ EL YV +
Sbjct: 80 VDYRAKLWACNFCYQRNQFPPSYAGISELNQP--AELLPQFSSI--------EYVVLRGP 129
Query: 271 RMSAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIAS 330
+M + V+D C+++ LQ L+ S+ + +PPTA +G+I +GR V V++ + I+
Sbjct: 130 QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISK 189
Query: 331 SDVLAGDKLPTEDSLKALLYGTGV-------------------YLSPMHASKQVAHDIFS 371
S V G K + L+ +L + V +L P+ D+
Sbjct: 190 SYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLG 249
Query: 372 SLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430
L+ + + R R G A+ +A+ +++ P +RI++ GGP T
Sbjct: 250 ELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF----------PNTGARIMMFIGGPAT 299
Query: 431 YGPGSVP----------HSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPV 480
GPG V + K K E L +A VIDI
Sbjct: 300 QGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQT 359
Query: 481 RVPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTRAA------GSHGFLEIRCSDDIL 533
+ ++ +GG +V+ D F + F QR T+ G G LEI+ S +I
Sbjct: 360 GLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIK 419
Query: 534 VTQIVGPGEEAHIDTHETFKND----AALSIQMPSVEETQSFAVSME-----NKRDIESN 584
++ +GP + +N+ ++ + T + A+ E N +
Sbjct: 420 ISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGG 479
Query: 585 HVFFQFAIRYSNVYQADISRVVTVRLPTVD---SVSAYLSSFQDEVAAVLIAKRTLLRAK 641
QF +Y + RV T+ D + +SF E AA+L+A+ + RA
Sbjct: 480 RGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRA- 538
Query: 642 IFSEAIDMRTMIDERVKDIALKFG---SQVPKSKLYRFPKELSALSELLFHLRRSPLLGN 698
E D+ +D ++ + KFG P S +RF + S + +FHLRRS L
Sbjct: 539 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSS--FRFSETFSLYPQFMFHLRRSSFLQV 596
Query: 699 IIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKAVVLDH 758
DE S R+ F+ SL M+ P Y G E + ++ +D+ +++D
Sbjct: 597 FNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDT 656
Query: 759 GTDVFIWLGAELAA----------DEGRSAAALAACRTLAEELSEFRFPAPRILAFKEGS 808
+ I+ G +A + L A A+E+ RFP PR + + G
Sbjct: 657 FFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGG 716
Query: 809 SQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLK 867
SQAR+ ++++ P+ + LT DD S +M LK
Sbjct: 717 SQARFLLSKVNPSQTHNNMYAWGQESGAPILT--------------DDVSLQVFMDHLK 761
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 874 | |||
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.59 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.21 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.74 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.49 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.46 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.32 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.29 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.28 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.26 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.23 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.22 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.21 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.12 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.12 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.11 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.11 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.07 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.06 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.06 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.06 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.03 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.89 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.83 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.74 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.73 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.48 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.42 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 97.3 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 96.2 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 96.18 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.79 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 95.72 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.4 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 95.24 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 94.82 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 94.15 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 93.83 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 93.32 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 93.25 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 92.05 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 91.76 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 90.25 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 88.58 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 86.96 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 85.09 |
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-143 Score=1299.66 Aligned_cols=686 Identities=25% Similarity=0.378 Sum_probs=598.2
Q ss_pred CCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCCCccccCCCccCCC--CCcccccceEEEcCCceEEEccC
Q 002842 146 PVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHN--CGAFANIYCKILLGSGQWQCVIC 223 (874)
Q Consensus 146 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~~p~v~~~p~RC~~--C~AylNP~~~~~~~~~~W~C~fC 223 (874)
.||+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|+.++++|+||||
T Consensus 14 ~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~-~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C 92 (769)
T 2nut_A 14 QNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP-DLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFC 92 (769)
T ss_dssp HHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS-CCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSS
T ss_pred ccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC-CCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCC
Confidence 5789999999999999999999999999999999999864 48889999999999 99999999999999999999999
Q ss_pred CCccCCCccccCCCccccCCCCCC--CCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhh
Q 002842 224 RNLNGSEGEYVAPSKEELRNFPEL--SSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVE 301 (874)
Q Consensus 224 ~~~N~~p~~Y~~~~~~d~~~~PEL--~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~~~l~~l~~sL~~~L~ 301 (874)
+++|++|++|+..+. .+.+||| +++||||+++.+| ..+|.||||||+|.++++++++|++|+++|+
T Consensus 93 ~~~N~~P~~Y~~~~~--~~~~pEL~p~~~tvEy~~~~~~----------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~ 160 (769)
T 2nut_A 93 YQRNQFPPSYAGISE--LNQPAELLPQFSSIEYVVLRGP----------QMPLIFLYVVDTCMEDEDLQALKESMQMSLS 160 (769)
T ss_dssp CCEEECCGGGTTCBT--TBCCGGGSGGGSSEEEEECSSC----------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCChHHccCCc--ccCChhhcCCCCcEEEEccCCC----------CCCCEEEEEEECCccHHHHHHHHHHHHHHHH
Confidence 999999999984432 3457899 8999999999875 2557789999999999999999999999999
Q ss_pred cCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHhh-------------------cCCccccchhhh
Q 002842 302 SIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY-------------------GTGVYLSPMHAS 362 (874)
Q Consensus 302 ~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~-------------------~~~~fL~pl~e~ 362 (874)
.||++++|||||||++||||+++.+.+.+++||+|+|+++.+++++|++ ..++||+|++||
T Consensus 161 ~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~ 240 (769)
T 2nut_A 161 LLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKI 240 (769)
T ss_dssp TSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CCCSSSEEHHHH
T ss_pred hCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHH
Confidence 9999999999999999999999998899999999999999888877652 126799999999
Q ss_pred HHHHHHHHHhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcccCCCC
Q 002842 363 KQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFS 441 (874)
Q Consensus 363 ~~~i~~lLe~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~~~ 441 (874)
++.|+++|++|+.+.|.....+++ ||+|+||++|..+|+.+++ +.||||++|++|+||.|||+|+.+++
T Consensus 241 ~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~----------~~GGrI~~F~sg~pt~GpG~l~~r~~ 310 (769)
T 2nut_A 241 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP----------NTGARIMMFIGGPATQGPGMVVGDEL 310 (769)
T ss_dssp HHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSC----------SSCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred HHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhccc----------CCCcEEEEEeCCCCCCCCCCCcCccc
Confidence 999999999999977766556666 9999999999999985432 36899999999999999999998765
Q ss_pred CCC-----------chhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh-HHHHH
Q 002842 442 HPN-----------YLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-AFGVN 509 (874)
Q Consensus 442 ~~~-----------~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~-~f~~d 509 (874)
++. .+++ +++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. .|.++
T Consensus 311 ~~~~rs~~d~~ke~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~ 389 (769)
T 2nut_A 311 KTPIRSWHDIDKDNAKYV-KKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQT 389 (769)
T ss_dssp TSCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHH
T ss_pred ccccccccccccchhhhc-cchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHH
Confidence 432 3334 7899999999999999999999999999999999999999999999999999975 69999
Q ss_pred HHHHHhh------ccCcceEEEEEeCCCeeEEEeecCCcccccccccc----cccCccccccccCCCCceEEEEEEEecc
Q 002842 510 LQRASTR------AAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHET----FKNDAALSIQMPSVEETQSFAVSMENKR 579 (874)
Q Consensus 510 l~r~~~~------~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~s~~~~~~~~~ 579 (874)
|+|.|++ .+||+|+||||||+||+|++++||+.+.++++++. ++.++++.|++++++++++|+|+|++++
T Consensus 390 l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~ 469 (769)
T 2nut_A 390 FQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVN 469 (769)
T ss_dssp HHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-
T ss_pred HHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecC
Confidence 9999998 68999999999999999999999999877665432 3345567899999999999999999998
Q ss_pred CC-----CCCceEEEEEEEEEecCCCEEEEEEeeeeccccch---HHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 002842 580 DI-----ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDSV---SAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRT 651 (874)
Q Consensus 580 ~~-----~~~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~---~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~ 651 (874)
.. +...+|||||++||+.+|+|||||||++++|+++. .+++++|||||++++|||+|++++++ ++..|+|+
T Consensus 470 ~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~-~~~~d~~~ 548 (769)
T 2nut_A 470 QHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET-EEGPDVLR 548 (769)
T ss_dssp ---------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTT-C---CHHH
T ss_pred ccccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhcc-CCHHHHHH
Confidence 63 35789999999999999999999999999999987 59999999999999999999999998 47899999
Q ss_pred HHHHHHHHHHHHhcccCCCC-CccccchhhhHHHHHHHHhccCcCCCCCCCCchHHHHHHHHHhccCHHHHHHhhcccee
Q 002842 652 MIDERVKDIALKFGSQVPKS-KLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCL 730 (874)
Q Consensus 652 ~Ld~~li~ll~~y~~~~~~~-~~l~Lp~~l~llP~~~~~L~Rs~~l~~~~~spDera~~~~~l~~~~v~~sl~miyP~L~ 730 (874)
|||++|+++|++|+.|.+.. .+|+||++|++||+||||||||++|++++++||||+|+|++++++++.+++.||||+||
T Consensus 549 ~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iyP~L~ 628 (769)
T 2nut_A 549 WLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILY 628 (769)
T ss_dssp HHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhcCEEE
Confidence 99999999999999886543 35999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcccCCcccccccCCcEEEEeCCcEEEEEeCCcccc--------cccc--cHHHHHHHHHHHHHHHhcCCCCcE
Q 002842 731 MYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAA--------DEGR--SAAALAACRTLAEELSEFRFPAPR 800 (874)
Q Consensus 731 ~~~~~~~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~--------~~~~--~~~~l~~~~~~~~~l~~~R~p~Pr 800 (874)
+||+++...+++++..+|.+|+|||||+|++|+||+|+++++ ++++ |++++++|+++|++|+++|||+||
T Consensus 629 ~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~i~~~R~p~Pr 708 (769)
T 2nut_A 629 AYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPR 708 (769)
T ss_dssp EECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHHSSSCCE
T ss_pred eccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHHHHhcCCCCCe
Confidence 999887655667778899999999999999999999999875 3444 689999999999999999999999
Q ss_pred EEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCCchHHHHHHhcccCC
Q 002842 801 ILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVVP 870 (874)
Q Consensus 801 ~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~~ 870 (874)
+++|+||+||||||++||||+++|+. .+|+ + + .++++|+|||+||++||+|||+.+
T Consensus 709 ~i~~~~g~sqaRfl~sklnps~~~~~----~~~~-----~--~---~~~~~~~tddvsl~~f~~~l~~~~ 764 (769)
T 2nut_A 709 YIDTEHGGSQARFLLSKVNPSQTHNN----MYAW-----G--Q---ESGAPILTDDVSLQVFMDHLKKLA 764 (769)
T ss_dssp EEEEETTCSTTHHHHHHCC------------------------------------CCSHHHHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHhcCCcccccC----CCcC-----C--C---cCCccccccccCHHHHHHHHHHHh
Confidence 99999999999999999999999852 1122 0 0 136789999999999999999763
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 874 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 3e-38 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 5e-26 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 5e-26 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 6e-24 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 6e-13 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 4e-12 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 5e-10 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 1e-09 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 141 bits (357), Expect = 3e-38
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 46/276 (16%)
Query: 277 ILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAG 336
V+D + +L L+ S+ + +PP A IG+I YG V ++D S ++I +V G
Sbjct: 6 FFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRG 65
Query: 337 DKLPTEDSLKALLYGT------------------------GVYLSPMHASKQVAHDIFSS 372
D+ ++L +L G + P+ + + + +
Sbjct: 66 DREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLEN 125
Query: 373 LRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTY 431
L P + ++ R R G+A+ +A ++QG + +RII+ A GP T
Sbjct: 126 LSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIP----------ARIILFASGPGTV 175
Query: 432 GPGSVP----------HSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVR 481
PG + H ++ K A K+ + ++ + +DI +
Sbjct: 176 APGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIG 235
Query: 482 VPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTR 516
+ ++ L ++GGVL+L D F A F + R +
Sbjct: 236 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271
|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 874 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.82 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.82 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.81 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.76 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.03 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.37 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.2 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.16 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.11 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.06 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.98 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.89 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.83 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.8 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.7 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.63 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.62 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.46 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.41 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 97.08 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.89 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 96.68 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 95.68 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 93.87 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-46 Score=399.14 Aligned_cols=234 Identities=25% Similarity=0.429 Sum_probs=210.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHhhhcCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHhhc-
Q 002842 273 SAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYG- 351 (874)
Q Consensus 273 ~p~~vFvID~s~~~~~l~~l~~sL~~~L~~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~~- 351 (874)
||.||||||+|.++++++.++++|+++|+.||++++|||||||++||||+++...+.+.+|++|.++++.+++++++..
T Consensus 2 Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~~ 81 (271)
T d2qtva3 2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQ 81 (271)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHCC
T ss_pred CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhcc
Confidence 5778999999999999999999999999999999999999999999999999888889999999999999998876531
Q ss_pred -----------------------CCccccchhhhHHHHHHHHHhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccc
Q 002842 352 -----------------------TGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEM 407 (874)
Q Consensus 352 -----------------------~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~ 407 (874)
.++||+|+++|++.|+++|++|+++.|.....+++ ||+|+||++|..+|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~--- 158 (271)
T d2qtva3 82 KPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY--- 158 (271)
T ss_dssp C-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHC---
T ss_pred ccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhc---
Confidence 25789999999999999999999988877666666 999999999999998533
Q ss_pred cccccccCCCCcEEEEEecCCCCCCCCcccCCCCCCCchh----------hhHhHHHHHHHHHHHHhhcCeEEEEeeecC
Q 002842 408 SRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYLH----------MEKMALKWMELLGRKAHQHNAVIDILCAGN 477 (874)
Q Consensus 408 ~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~~~~~~~~~----------~ek~a~~fY~~La~~~~~~gisVDiF~~s~ 477 (874)
.+.||||++|++|+||.|||+|+.++.++..+. ..+++.+||++||.+|+++||+||+|+++.
T Consensus 159 -------~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~ 231 (271)
T d2qtva3 159 -------KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 231 (271)
T ss_dssp -------TTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred -------cCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecC
Confidence 136899999999999999999998765543211 126899999999999999999999999999
Q ss_pred CCCCcccchhhhcccccEEEEcCChhh-HHHHHHHHHHhh
Q 002842 478 CPVRVPVLQPLAKASGGVLVLHDDFGE-AFGVNLQRASTR 516 (874)
Q Consensus 478 d~vglaem~~l~~~TGG~v~~~~~F~~-~f~~dl~r~~~~ 516 (874)
+|+|++||+.|++.|||.+++|++|++ .|+++|+|+|+|
T Consensus 232 ~~~dl~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r 271 (271)
T d2qtva3 232 DQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271 (271)
T ss_dssp SCCSHHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred ccCChHHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999985 799999999875
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|